Citrus Sinensis ID: 005174
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9I6 | 681 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.986 | 0.599 | 0.0 | |
| Q4V389 | 703 | Pentatricopeptide repeat- | no | no | 0.967 | 0.977 | 0.510 | 0.0 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.984 | 0.822 | 0.334 | 1e-112 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.847 | 0.812 | 0.345 | 1e-104 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.880 | 0.772 | 0.331 | 1e-102 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.847 | 0.565 | 0.321 | 1e-100 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.849 | 0.793 | 0.300 | 8e-98 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.736 | 0.750 | 0.341 | 2e-97 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.807 | 0.825 | 0.328 | 3e-97 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.876 | 0.714 | 0.323 | 2e-96 |
| >sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/677 (59%), Positives = 517/677 (76%), Gaps = 5/677 (0%)
Query: 39 NLLETLKDFAGRGNLSKAFEAFTRIRI---TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+L ++L A G+L AF+ F+ +R+ +A S D+VL S A ++ C V+A G Q
Sbjct: 5 SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
+HA I+ G+E + VLVPKLVTFY++F+L+N A ++ENS+I +PLPWN+LI+ Y ++
Sbjct: 65 VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214
+ E + YK+M S+ IR D FTYPSVLKACGE +DV FGRVVH I+ + ++ SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
L+SMY +F + +ARRLFD+M ERDAVSWN +I+ YAS+G+W EAF+LF +M GVEV+
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
VITWN I+GGCL+TGN+ G L L+SRMR T LD VA +IGL ACS +GA++LGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
A+ Y +NVRN LITMYS+CKDLRHA I+F+ T E S+ TWNS++SGY L+ +EE
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++ L REM +G +PN +T+ASILPLCAR+ANLQHGKEFHCYILRR F ++ +LWNSLV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
++YA+SGK+ AK V DLMS+RDEVTYTSLI GYG QGEG VAL LF+EM ++ IKPDHV
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
T+VAVLSACSHS LV EG++ F +M YGI P L+HF+CMVDLYGRAG L KAK+II
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYAA G W KL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AGY 693
A+VRT MRDLGV+K PGCAW+D + FS F V DTS+ +A YPLL GL +LMKD AGY
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664
Query: 694 VVKEEFCSEEEIVEEIG 710
+ + S+EE+++E+G
Sbjct: 665 AINKVQSSDEELLQEMG 681
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protein At1g22830 OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/721 (51%), Positives = 491/721 (68%), Gaps = 34/721 (4%)
Query: 1 MPPSSSRLILNGLSVSQLEKFIPKKWKQ---PI-------NNEHIMRINLLETLKDFAGR 50
MP S SR IL GL+VS++ KFIP+ WKQ PI ++E + ++ L + +
Sbjct: 1 MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQV-LFNSFRHCISH 59
Query: 51 GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
G L +AF F+ +R + SH+ VL S A ++ C G+QLHA I+ GLE + V
Sbjct: 60 GQLYEAFRTFSLLRYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSV 119
Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
LVPKLVTFY++F+L + A + ENS I +PLPWN+LI Y+R+ + E++ VYK+M S+
Sbjct: 120 LVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKG 179
Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVAR 229
IR D FTYPSV+KAC ++D +GRVVH I+ + H +L+V NAL+SMY +FG+VDVAR
Sbjct: 180 IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVAR 239
Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
RLFD+M ERDAVSWN +I+ Y S+ EAF+L M GVE +++TWNTIAGGCL G
Sbjct: 240 RLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAG 299
Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--GEYENV 347
N+ G L + MR + SVA + GL ACSH+GALK GK H +R C + +NV
Sbjct: 300 NYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV 359
Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
RN+LITMYSRC DLRHA+I+F+ S+ TWNS++SG+ + + +EE++FL +EM SG
Sbjct: 360 RNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGF 419
Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
PN++T+ASILPL ARV NLQHGKEFHCYILRR + + L+LWNSLV+MYA+SG++ AK
Sbjct: 420 HPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479
Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
VFD M +RD+VTYTSLI GYG G+G VAL F++M+++ IKPDHVTMVAVLSACSHS
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSN 539
Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
LV EG F +M ++GI +LEH++CMVDLY RAG L+KA++I +PY P+SAM ATL
Sbjct: 540 LVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATL 599
Query: 588 LGACQIHRNTGIGEWAAEK-LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
L AC IH NT IGEWAA+K LLET+PE+ G+Y+L+A+MYA TG W KL V+T + DLGV
Sbjct: 600 LKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659
Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIV 706
+K A L++ S + + P M D + +E+ EE +V
Sbjct: 660 QKAHEFA-----------LMETDSELDGENNKP--------MNDDSVINQEQSSDEERLV 700
Query: 707 E 707
E
Sbjct: 701 E 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/718 (33%), Positives = 383/718 (53%), Gaps = 19/718 (2%)
Query: 5 SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR 64
+S LI +SV L + + P ++ + N L ++ + G +K F +
Sbjct: 62 TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSL--IRSYGDNGCANKCLYLFGLMH 119
Query: 65 ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL 124
+ + D +F + CG++ ++ G+ HA ++ G N + LV Y+
Sbjct: 120 SLSWTPDNY--TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177
Query: 125 YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLK 183
++A + + ++ + WN +I Y + G AL ++ +M + R DN T +VL
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237
Query: 184 ACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
C + G+ +H C E ++FV N LV MY K G +D A +F M +D V
Sbjct: 238 PCASLGTHSLGKQLH-CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296
Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
SWN M++ Y+ G +++A +LF +MQEE ++++V+TW+ G + G L + +M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356
Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-------GCYGEYENVRNALITM 354
+ + V + L C+ VGAL GKEIH A++ +G+ V N LI M
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416
Query: 355 YSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PN 410
Y++CK + A +F + E+ ++TW M+ GY+ A ++ L EMF + PN
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
TI+ L CA +A L+ GK+ H Y LR L + N L++MYA+ G + +A+ VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
D M ++EVT+TSL+ GYG+ G G AL +F+EM + K D VT++ VL ACSHSG++
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
+G + F RM +++G+ P EH+AC+VDL GRAG LN A +I +MP P +W L
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
C+IH +GE+AAEK+ E + G Y L++N+YA G W + ++R+ MR GV+K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716
Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEE 708
GC+WV+ + F V D ++ A+EIY +L + +KD GYV + F + EE
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEE 774
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 212/613 (34%), Positives = 345/613 (56%), Gaps = 11/613 (1%)
Query: 88 KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
K L + +HA I +GL + KL+ F + + + I+ P L WN
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWN 103
Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-- 202
+ + AL +Y M S + +++T+P VLK+C + G+ +H +
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 163
Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
C + L+VH +L+SMY + G+++ A ++FDK RD VS+ +I YAS+G + A +L
Sbjct: 164 GC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222
Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
F E+ + +V++WN + G TGN+K LEL M D V + AC+
Sbjct: 223 FDEIPVK----DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
G+++LG+++H +G + NALI +YS+C +L A LF+ K +I+WN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
+ GYTH++ +E+ LF+EM RSG PN VT+ SILP CA + + G+ H YI +R
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 443 -FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
L SL++MYA+ G + A VF+ + + ++ ++I G+ + G + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
M K I+PD +T V +LSACSHSG++ G+ F MT Y + P+LEH+ CM+DL G
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
+GL +A+E+I M P +W +LL AC++H N +GE AE L++ PEN G YVL+
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
+N+YA+ G W+++AK R + D G++K+PGC+ ++ +V F++ D + + +EIY +L
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 682 GGLTELMKDAGYV 694
+ L++ AG+V
Sbjct: 639 EEMEVLLEKAGFV 651
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 222/670 (33%), Positives = 355/670 (52%), Gaps = 45/670 (6%)
Query: 28 QPINNEHIMRINLL--ETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCG 85
+PI++ ++N+L LK FA +L KA + F R+R + V+ +F +++ CG
Sbjct: 93 EPIDS----KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV--EPVVYNFTYLLKVCG 146
Query: 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNL 145
L GK++H + G + + L YA N A + + R + WN
Sbjct: 147 DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNT 206
Query: 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDAC 204
+++ Y ++G AL + K M ++ T SVL A + + G+ +H + +
Sbjct: 207 IVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266
Query: 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFV 264
+ + + ALV MY K G ++ AR+LFD MLER+ VSWN+MI AY KEA +F
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326
Query: 265 EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324
+M +EGV+ V+ + L AC+ +G
Sbjct: 327 KMLDEGVKPT-----------------------------------DVSVMGALHACADLG 351
Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
L+ G+ IH +V +V N+LI+MY +CK++ A +F +++++WN+M+
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411
Query: 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN 444
G+ ++ F +M V+P+ T S++ A ++ H K H ++R + +
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCL-D 470
Query: 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEM 504
+++ + +LV+MYA+ G + A+ +FD+MS R T+ ++I GYG G G+ AL+LFEEM
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530
Query: 505 NKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564
K IKP+ VT ++V+SACSHSGLV G K F M Y I ++H+ MVDL GRAG
Sbjct: 531 QKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGR 590
Query: 565 LNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624
LN+A + I +MP P ++ +LGACQIH+N E AAE+L E P++ GY+VL+AN+
Sbjct: 591 LNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANI 650
Query: 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684
Y A W+K+ +VR M G+RK PGC+ V+ N F T++ +++IY L L
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKL 710
Query: 685 TELMKDAGYV 694
+K+AGYV
Sbjct: 711 ICHIKEAGYV 720
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/641 (32%), Positives = 331/641 (51%), Gaps = 39/641 (6%)
Query: 55 KAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114
KA E F R+ + D ++ A ++ C L +G+QLHA LG N +
Sbjct: 372 KAMELFKRMHLDGLEPDS--NTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429
Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
L+ YA + A + + + WN+++ Y + +++QMQ I +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489
Query: 175 NFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFD 233
+TYPS+LK C + D++ G +HS I + + +V + L+ MY K G++D A
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTA----- 544
Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
W+ +I +A K +V++W T+ G +
Sbjct: 545 ---------WDILIR-FAGK--------------------DVVSWTTMIAGYTQYNFDDK 574
Query: 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353
L +M + D V + AC+ + ALK G++IH A + +NAL+T
Sbjct: 575 ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVT 634
Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413
+YSRC + +Y+ F+ T I WN+++SG+ EE+ +F M R G++ N T
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694
Query: 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLM 473
S + + AN++ GK+ H I + ++ + N+L+ MYA+ G + +A+ F +
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTG-YDSETEVCNALISMYAKCGSISDAEKQFLEV 753
Query: 474 SRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533
S ++EV++ ++I Y G G AL F++M + ++P+HVT+V VLSACSH GLV +G
Sbjct: 754 STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813
Query: 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593
FE M S YG+ P+ EH+ C+VD+ RAGLL++AKE I +MP P + +W TLL AC +
Sbjct: 814 AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVV 873
Query: 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653
H+N IGE+AA LLE PE+S YVL++N+YA + WD R M++ GV+K PG +
Sbjct: 874 HKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 933
Query: 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
W++ N F V D ++ A EI+ LT+ + GYV
Sbjct: 934 WIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYV 974
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 358 bits (919), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 193/642 (30%), Positives = 351/642 (54%), Gaps = 39/642 (6%)
Query: 95 QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
Q HA + G + + + KL+ Y++++ +N+A ++++ ++ LI +
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH--SCIDACHEWSLFVH 212
+ +++ V+ +M S + D+ P++ K C E+ G+ +H SC+ + FV
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGL-DMDAFVQ 154
Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
++ MY + G++ AR++FD+M ++D V+ + ++ AYA KG +E ++ EM+ G+E
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIE 214
Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
N+++WN I G R+G K + + ++ D V L + L +G+ I
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLR-----------------HAYI--------- 366
HG ++ + + V +A+I MY + + +AYI
Sbjct: 275 HGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLV 334
Query: 367 --------LFK-MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417
LFK T E ++++W S+++G E+ LFREM +GV+PN+VTI S+
Sbjct: 335 DKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSM 394
Query: 418 LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD 477
LP C +A L HG+ H + +R + +++ + ++L++MYA+ G++ ++ VF++M ++
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLL-DNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN 453
Query: 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537
V + SL+ G+ + G+ + + +FE + + ++KPD ++ ++LSAC GL EG K F+
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFK 513
Query: 538 RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597
M+ YGI P+LEH++CMV+L GRAG L +A ++I +MP+ P S +W LL +C++ N
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573
Query: 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDA 657
+ E AAEKL PEN G YVL++N+YAA G W ++ +R M LG++K PGC+W+
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633
Query: 658 GNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
N L D S+ Q +I + +++ M+ +G+ +F
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDF 675
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 207/606 (34%), Positives = 319/606 (52%), Gaps = 83/606 (13%)
Query: 130 FLVENSNIRYPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLK 183
FL E ++ +P WN ++S + + EALC + M + +++ SVL
Sbjct: 101 FLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLS 160
Query: 184 ACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
AC + D++ G VHS I S +++ +ALV MY K G V+ A+R+FD+M +R+ VS
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220
Query: 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302
WN++I+ + G EA +F M E SR+
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLE------------------------------SRVE 250
Query: 303 TQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN---VRNALITMYSRCK 359
E L SV + AC+ + A+K+G+E+HG V+ + N + NA + MY++C
Sbjct: 251 PDEVTLASV-----ISACASLSAIKVGQEVHGRVVKN--DKLRNDIILSNAFVDMYAKCS 303
Query: 360 DLRHAY-------------------------------ILFKMTAEKSIITWNSMLSGYTH 388
++ A ++F AE+++++WN++++GYT
Sbjct: 304 RIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363
Query: 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF----- 443
EE+ LF + R V P + + A+IL CA +A L G + H ++L+
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423
Query: 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503
+ + + NSL++MY + G V E VF M RD V++ ++I G+ G G AL+LF E
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFRE 483
Query: 504 MNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG 563
M ++ KPDH+TM+ VLSAC H+G V EG+ F MT +G+ P +H+ CMVDL GRAG
Sbjct: 484 MLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543
Query: 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623
L +AK +I +MP P S +W +LL AC++HRN +G++ AEKLLE P NSG YVL++N
Sbjct: 544 FLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSN 603
Query: 624 MYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGG 683
MYA G W+ + VR MR GV K PGC+W+ F+V D S+ + ++I+ LL
Sbjct: 604 MYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDI 663
Query: 684 LTELMK 689
L M+
Sbjct: 664 LIAEMR 669
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (915), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 200/609 (32%), Positives = 328/609 (53%), Gaps = 36/609 (5%)
Query: 91 AQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLY 150
AQ KQ+HA + LGL+ + L+ KL+ +SF A + ++ PWN +I Y
Sbjct: 35 AQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94
Query: 151 VRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSL 209
R+ + +AL +Y MQ R+ D+FT+P +LKAC + + GR VH+ + + +
Sbjct: 95 SRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADV 154
Query: 210 FVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269
FV N L+++Y K ++ AR +F E L
Sbjct: 155 FVQNGLIALYAKCRRLGSARTVF-------------------------EGLPL------- 182
Query: 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLG 329
E +++W I + G LE+ S+MR + D VA V L A + + LK G
Sbjct: 183 -PERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQG 241
Query: 330 KEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHL 389
+ IH S V+ ++ +L TMY++C + A ILF ++I WN+M+SGY
Sbjct: 242 RSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN 301
Query: 390 DCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449
A E+ +F EM V P+ ++I S + CA+V +L+ + + Y+ R+ + + + +
Sbjct: 302 GYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV-GRSDYRDDVFI 360
Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
++L++M+A+ G V A+ VFD RD V ++++I GYG+ G R A+ L+ M + +
Sbjct: 361 SSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV 420
Query: 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569
P+ VT + +L AC+HSG+V EG F RM + I PQ +H+AC++DL GRAG L++A
Sbjct: 421 HPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAY 479
Query: 570 EIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629
E+I MP P +W LL AC+ HR+ +GE+AA++L P N+G+YV ++N+YAA
Sbjct: 480 EVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAAR 539
Query: 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
WD++A+VR M++ G+ K GC+WV+ F V D S+ + +EI + + +K
Sbjct: 540 LWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLK 599
Query: 690 DAGYVVKEE 698
+ G+V ++
Sbjct: 600 EGGFVANKD 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 218/674 (32%), Positives = 342/674 (50%), Gaps = 52/674 (7%)
Query: 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCC-----GKVKALAQGKQLHA 98
+ + A G+ S + F ++ S V +DS+ F C ++++ G+QLH
Sbjct: 167 MNELAKSGDFSGSIGLFKKM----MSSGVEMDSYT---FSCVSKSFSSLRSVHGGEQLHG 219
Query: 99 CAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158
+ G + + LV FY ++A + + R + WN +I+ YV +G +
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 159 ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC-IDACHEWSLFVHNALVS 217
L V+ QM I D T SV C + + GR VHS + AC N L+
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339
Query: 218 MYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277
MY K G +D A+ +F +M +R VS+ +MI+ YA +GL EA +LF EM+EEG+ +V T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAV 337
+ L C+ L GK +H
Sbjct: 400 VTAV-----------------------------------LNCCARYRLLDEGKRVHEWIK 424
Query: 338 RGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAF 397
G V NAL+ MY++C ++ A ++F K II+WN+++ GY+ A E+
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484
Query: 398 LFREMFRSG-VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456
LF + P+ T+A +LP CA ++ G+E H YI+R F++ + NSLV+M
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVA-NSLVDM 543
Query: 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516
YA+ G + A +FD ++ +D V++T +IAGYG+ G G+ A+ LF +M + I+ D ++
Sbjct: 544 YAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISF 603
Query: 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576
V++L ACSHSGLV EG + F M I P +EH+AC+VD+ R G L KA I MP
Sbjct: 604 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Query: 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636
P + +W LL C+IH + + E AEK+ E PEN+GYYVL+AN+YA W+++ +
Sbjct: 664 IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKR 723
Query: 637 VRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY--V 694
+R + G+RK PGC+W++ + F+ D+SN + + I L + M + GY +
Sbjct: 724 LRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPL 783
Query: 695 VKEEFCSEEEIVEE 708
K EE+ +E
Sbjct: 784 TKYALIDAEEMEKE 797
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| 255574235 | 730 | pentatricopeptide repeat-containing prot | 0.998 | 0.971 | 0.678 | 0.0 | |
| 225460143 | 748 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.943 | 0.636 | 0.0 | |
| 147862014 | 822 | hypothetical protein VITISV_028645 [Viti | 0.994 | 0.858 | 0.633 | 0.0 | |
| 224145066 | 683 | predicted protein [Populus trichocarpa] | 0.945 | 0.982 | 0.68 | 0.0 | |
| 356536685 | 723 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.972 | 0.635 | 0.0 | |
| 297741017 | 753 | unnamed protein product [Vitis vinifera] | 0.932 | 0.879 | 0.594 | 0.0 | |
| 449447569 | 712 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.990 | 0.589 | 0.0 | |
| 357481301 | 812 | Pentatricopeptide repeat-containing prot | 0.980 | 0.857 | 0.587 | 0.0 | |
| 15217514 | 681 | pentatricopeptide repeat-containing prot | 0.946 | 0.986 | 0.599 | 0.0 | |
| 297841915 | 682 | pentatricopeptide repeat-containing prot | 0.946 | 0.985 | 0.597 | 0.0 |
| >gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/731 (67%), Positives = 585/731 (80%), Gaps = 22/731 (3%)
Query: 1 MPPSSSRLILNGLSVSQLEKFIPKKWK-----------QPI------NNEHIMRINLLET 43
M +SSR L GLS+SQ++KFIPKKWK PI NE ++ NL+ +
Sbjct: 1 MTSASSRFALRGLSMSQIQKFIPKKWKGSTKEIDLQKNYPILGECKSGNESMIE-NLVNS 59
Query: 44 LKDFAGRGNLSKAFEAFTRIRITAA---SHDVVLDSFAHIIFCCGKVKALAQGKQLHACA 100
LK FA +GNL KAF+ F+ I+ A+ S DVVL S + ++ C +K+L+QGKQLH
Sbjct: 60 LKGFASQGNLLKAFKTFSLIQRHASCSTSDDVVLHSVSSLLLSCVNLKSLSQGKQLHTLI 119
Query: 101 IALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160
I+LG E++P++VPKLVTFY +F L +A + ENSNI +PLPWNLLIS YVR+G + EAL
Sbjct: 120 ISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEAL 179
Query: 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMY 219
YKQM + IR D FTYPSVLKACGE +D+ FG+ +H+ I+A C W+LFVHN+LVSMY
Sbjct: 180 SAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMY 239
Query: 220 GKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279
K G++ AR LF+ MLERD VSWNTMIS YASKG+WKEAF+LF +M+ EG+E+N+ITWN
Sbjct: 240 AKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWN 299
Query: 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
TIAGGC+++GNF+ LELLS MR+ +DSVAT+IGLGACSH+GA+KLG+EIHGSA+R
Sbjct: 300 TIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRS 359
Query: 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLF 399
Y +NV+NALITMYSRCK LRHAY LF+ T K+IITWNSMLSGYTH+D +EE++FLF
Sbjct: 360 FYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLF 419
Query: 400 REMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459
REM SG+EPNYVTIASILPLCARVANLQHGKEFHCYILRRA F ++LLLWNSLV+MYAR
Sbjct: 420 REMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYAR 479
Query: 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV 519
SGKV EAK +FD +SRRDEVTYTSLIAGYGIQGEGR ALKLF+EM K IKPDHVTMVAV
Sbjct: 480 SGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAV 539
Query: 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTP 579
LSACSHSGLV EG K FE M S YGI P+LEHFACMVDL+GRAGLL+KAKE+IT+MPY P
Sbjct: 540 LSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRP 599
Query: 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639
+SAMWATLLGAC+IH N IGEWAAEKLLE RPENSGYYVLIANMYAA GCW KLAKVRT
Sbjct: 600 SSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAGCWSKLAKVRT 659
Query: 640 CMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEF 699
MRDLGVRK PGCAWVD G+ F PFLVDDTS ++YPLL GLTELMKDA YV KE
Sbjct: 660 YMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGLTELMKDAEYVGKENV 719
Query: 700 CSEEEIVEEIG 710
S ++++E IG
Sbjct: 720 GSVDDVIEAIG 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/734 (63%), Positives = 571/734 (77%), Gaps = 28/734 (3%)
Query: 3 PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
P S + GL VSQ+++FIPKKWKQ P++ +H+ M
Sbjct: 2 PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 61
Query: 38 INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+LL +LK+F RGNL AF+ + IR+ ++AS D+++ + ++ C VK+LA+G+Q
Sbjct: 62 DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 121
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
LH I+LG E++P+LVPKLVTFY++F+L +A + ENSNI +P PWNLLIS YVR+GF
Sbjct: 122 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 181
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNA 214
+AL YKQM + IR DNFTYPSVLKACGE +D+ FG+ VH I+A +WSL VHNA
Sbjct: 182 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNA 241
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
L+SMYGK G+V +AR LFDK+ ERDAVSWN+MIS YAS G+W EAF+LF M E +E+N
Sbjct: 242 LISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELN 301
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
+I WNTIAGG LRTGN+KG LELLS+MR ++LDSVA +IGLGACSH+G KLGKEIH
Sbjct: 302 IIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHS 361
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
A+R C+GE + V+NALITMYSRCKDL+HAY+LF++ KS+ITWNS++SG H+D +EE
Sbjct: 362 FAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEE 421
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++FL REM G+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR F +HLLLWN+LV
Sbjct: 422 ASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 481
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
+MYARSGKV EA+ VFD++ RD++TYTS+IAGYG+QGEG+ ALKLFEEMN QIKPDH+
Sbjct: 482 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 541
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
TM+AVLSACSHSGLV +GQ FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII
Sbjct: 542 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 601
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KL
Sbjct: 602 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKL 661
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
AKVR MRDLGVRK PGCAWVD G FSPFLVDDTSN A EIYPLL GLT +MK+AGY+
Sbjct: 662 AKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYI 721
Query: 695 VKEEFCSEEEIVEE 708
E+F S +E E
Sbjct: 722 SSEDFGSGDETSGE 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/734 (63%), Positives = 572/734 (77%), Gaps = 28/734 (3%)
Query: 3 PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
P S + GL VSQ+++FIPKKWKQ P++ +H+ M
Sbjct: 76 PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 135
Query: 38 INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+LL +LK+F RGNL AF+ + IR+ ++AS D+++ + ++ C VK+LA+G+Q
Sbjct: 136 DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 195
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
LH I+LG E++P+LVPKLVTFY++F+L +A + ENSNI +P PWNLLIS YVR+GF
Sbjct: 196 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 255
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNA 214
+AL YKQM + IR DNFTYPSVLKACGE +D+ FG+ VH I+A +WSL VHNA
Sbjct: 256 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNA 315
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
L+SMYGK G+V +AR LFDK+ ERDAVSWN+MIS YAS G+W EAF+LF M E +E+N
Sbjct: 316 LISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELN 375
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
+I WNTIAGG LRTGN+KG LELLS+MR ++LDSVA +IGLGACSH+G KLGKEIH
Sbjct: 376 IIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHS 435
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
A+R C+GE + V+N+LITMYSRCKDL+HAY+LF++ KS+I+WNS++SG H+D +EE
Sbjct: 436 FAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEE 495
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++FL REM SG+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR F +HLLLWN+LV
Sbjct: 496 ASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALV 555
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
+MYARSGKV EA+ VFD++ RD++TYTS+IAGYG+QGEG+ ALKLFEEMN QIKPDH+
Sbjct: 556 DMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHI 615
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
TM+AVLSACSHSGLV +GQ FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII
Sbjct: 616 TMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRN 675
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KL
Sbjct: 676 MPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKL 735
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
AKVR MRDLGVRK PGCAWVD G FSPFLVDDTSN A EIYPLL GLT ++K+AGY+
Sbjct: 736 AKVRXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVIKEAGYI 795
Query: 695 VKEEFCSEEEIVEE 708
E+F S +E E
Sbjct: 796 SSEDFGSGDETSGE 809
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/675 (68%), Positives = 550/675 (81%), Gaps = 4/675 (0%)
Query: 39 NLLETLKDFAGRGNLSKAFEAFTRIRITAAS--HDVVLDSFAHIIFCCGKVKALAQGKQL 96
NL +LKD A +G+L KAFE F+ I++ A+S D +L S + +++ C +K+L QGKQL
Sbjct: 4 NLFNSLKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQL 63
Query: 97 HACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFY 156
HA I+LG E + VLVPKLVTFY+SFSL +A + NS+I PLPWNLLIS YV +G +
Sbjct: 64 HAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLH 123
Query: 157 AEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC--HEWSLFVHNA 214
EAL Y++M + +R DNFTYPSVLKACGE +D+DFGR VH I+A H W+L+VHN+
Sbjct: 124 GEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNS 183
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
LVSMYGKFG++D ARRLF++M ERDAVSWN +IS YAS+GLWKEAF+LF EM+ G EVN
Sbjct: 184 LVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVN 243
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
+ITWNTIAGGC++T NFKG LELLS+MR + LD VA +IGLGACSH+GA+KLG IH
Sbjct: 244 IITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHA 303
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
SA+R C+ ++NVRNALITMYSRCKDLRHA ILFK KS+ TWNSMLSGYTH+D +EE
Sbjct: 304 SAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEE 363
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++FLFREM SG+EPNYVTIASILP CARVANLQ GKEFHCYI+RR F ++LLLWNSLV
Sbjct: 364 ASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLV 423
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
EMYARSGKV AK VFD + RRD+VTYTSLIAGYGIQGEG+ ALKLF+EM K++IKPD V
Sbjct: 424 EMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQV 483
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
TMVAVLSACSHSGLV EG FE+M+++YGI P +EHF+CMVDL+GRAGLLNKAK++IT
Sbjct: 484 TMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITS 543
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY PT+AMWATL+GAC+IH NT IGEWAAEKLLE +PEN GYYVLIANM+AA G W KL
Sbjct: 544 MPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKL 603
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694
A+VRT MRDLGVRK PGC WVD G+ FSPF+V DTS + ++Y LL GLT+LMKDAGYV
Sbjct: 604 AEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYELLEGLTDLMKDAGYV 663
Query: 695 VKEEFCSEEEIVEEI 709
E F SE+E++EEI
Sbjct: 664 AGENFSSEDEVLEEI 678
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/714 (63%), Positives = 562/714 (78%), Gaps = 11/714 (1%)
Query: 6 SRLILNGLSVSQLEKFIPKKWKQ----PIN-----NEHIMRINLLETLKDFAGRGNLSKA 56
S ++ L +S+L+K IPK WKQ P+ ++ M L+ +LKDF G+L+ A
Sbjct: 4 SSIVPRHLFLSRLQKCIPKSWKQAPQQPLQKPIFCSDASMVGVLIASLKDFVTHGHLTNA 63
Query: 57 FEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLV 116
F+ F +I+ AAS ++L ++ C K+L+QGKQLHA I+LGL++NP+LV +LV
Sbjct: 64 FKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLV 123
Query: 117 TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF 176
FY + +L +A F+ E+SN PL WNLLIS YVR+GF+ EALCVYK M +++I D +
Sbjct: 124 NFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEY 183
Query: 177 TYPSVLKACGEMMDVDFGRVVHSCIDACH-EWSLFVHNALVSMYGKFGQVDVARRLFDKM 235
TYPSVLKACGE +D + G VH I+A EWSLFVHNALVSMYG+FG++++AR LFD M
Sbjct: 184 TYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNM 243
Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
RD+VSWNT+IS YAS+G+WKEAFQLF MQEEGVE+NVI WNTIAGGCL +GNF+G L
Sbjct: 244 PRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGAL 303
Query: 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355
+L+S+MRT +LD++A V+GL ACSH+GA+KLGKEIHG AVR C+ ++NV+NALITMY
Sbjct: 304 QLISQMRTS-IHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMY 362
Query: 356 SRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415
SRC+DL HA+ILF T EK +ITWN+MLSGY H+D EE FLFREM + G+EPNYVTIA
Sbjct: 363 SRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIA 422
Query: 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475
S+LPLCAR+ANLQHGKEFHCYI++ F E+LLLWN+LV+MY+RSG+V EA+ VFD +++
Sbjct: 423 SVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTK 482
Query: 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535
RDEVTYTS+I GYG++GEG LKLFEEM K +IKPDHVTMVAVL+ACSHSGLV +GQ
Sbjct: 483 RDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVL 542
Query: 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHR 595
F+RM ++GI P+LEH+ACM DL+GRAGLLNKAKE IT MPY PTSAMWATLLGAC+IH
Sbjct: 543 FKRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHG 602
Query: 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655
NT +GEWAA KLLE +P++SGYYVLIANMYAA G W KLA+VRT MR+LGVRK PGCAWV
Sbjct: 603 NTEMGEWAAGKLLEMKPDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWV 662
Query: 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEI 709
D G+ FSPFLV D+SN A EIYPL+ GL ELMKDAGYV EE S EE EE+
Sbjct: 663 DVGSEFSPFLVGDSSNPHASEIYPLMDGLNELMKDAGYVRSEELVSSEEDFEEM 716
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/733 (59%), Positives = 534/733 (72%), Gaps = 71/733 (9%)
Query: 3 PSSSRLILNGLSVSQLEKFIPKKWKQ---PINNEHI----------------------MR 37
P S + GL VSQ+++FIPKKWKQ P++ +H+ M
Sbjct: 2 PHPSYFLPKGLFVSQIQRFIPKKWKQSIKPVDIQHVHPSASCNALESAQETFTSVDASMI 61
Query: 38 INLLETLKDFAGRGNLSKAFEAFTRIRI--TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+LL +LK+F RGNL AF+ + IR+ ++AS D+++ + ++ C VK+LA+G+Q
Sbjct: 62 DSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQ 121
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
LH I+LG E++P+LVPKLVTFY++F+L +A + ENSNI +P PWNLLIS YVR+GF
Sbjct: 122 LHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGF 181
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215
+AL YKQM + IR DNFTYPSVLKACGE +D+ FG+ VH I+A
Sbjct: 182 CQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINA------------ 229
Query: 216 VSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
S YAS G+W EAF+LF M E +E+N+
Sbjct: 230 --------------------------------SLYASMGMWNEAFELFGSMWAEDIELNI 257
Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGS 335
I WNTIAGG LRTGN+KG LELLS+MR ++LDSVA +IGLGACSH+G KLGKEIH
Sbjct: 258 IIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSF 317
Query: 336 AVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
A+R C+GE + V+NALITMYSRCKDL+HAY+LF++ KS+ITWNS++SG H+D +EE+
Sbjct: 318 AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEA 377
Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
+FL REM G+EPNYVTIAS+LPLCARVANLQHGKEFHCY+ RR F +HLLLWN+LV+
Sbjct: 378 SFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVD 437
Query: 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515
MYARSGKV EA+ VFD++ RD++TYTS+IAGYG+QGEG+ ALKLFEEMN QIKPDH+T
Sbjct: 438 MYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHIT 497
Query: 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575
M+AVLSACSHSGLV +GQ FE+M S+YG+ P LEHFACM DL+GRAGLLNKAKEII M
Sbjct: 498 MIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 557
Query: 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635
PY PT AMWATL+GAC+IHRNT IGEWAAEKLLE +PEN GYYVLIANMYAA GCW+KLA
Sbjct: 558 PYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLA 617
Query: 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVV 695
KVR MRDLGVRK PGCAWVD G FSPFLVDDTSN A EIYPLL GLT +MK+AGY+
Sbjct: 618 KVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGLTMVMKEAGYIS 677
Query: 696 KEEFCSEEEIVEE 708
E+F S +E E
Sbjct: 678 SEDFGSGDETSGE 690
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Cucumis sativus] gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/711 (58%), Positives = 530/711 (74%), Gaps = 6/711 (0%)
Query: 1 MPPSSSRLILNGLSVSQLEKFIPKKWKQ-PINNEHIMRI-NLLETLKDFAGRGNLSKAFE 58
M S S+ IL GLS+S+LE FIPK WK P++N I ++ +LKDFA G LSK+FE
Sbjct: 1 MSFSPSQCILKGLSISKLETFIPKSWKNLPVSNSSEFMIGSIFSSLKDFASHGQLSKSFE 60
Query: 59 AFTRIRITAA---SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115
AF+ I++ + S D++L S + ++ C K +L GKQLH I+ GL ++ LV KL
Sbjct: 61 AFSLIQLRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKL 120
Query: 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175
V FY+S A LVE SN+ P WN+LI+ YV+ Y A+ YKQM S+ +R DN
Sbjct: 121 VMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVKHKLYEAAILAYKQMVSKGVRPDN 180
Query: 176 FTYPSVLKACGEMMDVDFGRVVHSCIDA-CHEWSLFVHNALVSMYGKFGQVDVARRLFDK 234
FT+PS+LKACGE ++ FG VH I++ WSLFVHNAL+SMYG+ G+VD AR LFD
Sbjct: 181 FTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDN 240
Query: 235 MLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294
MLERDAVSWN+MIS Y+S+G+W+EAF+LF MQ + +E+NV+TWN IAGGCLR GNF
Sbjct: 241 MLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQA 300
Query: 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354
L+LLS+MR +LD VA +IGLGACSH+GA++LGKEIHG +R + V+NAL+TM
Sbjct: 301 LKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTM 360
Query: 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI 414
Y+RCKD+RHAY+LF++ +KS ITWNSMLSG THL EE+ LFRE+ GVEP+YVT
Sbjct: 361 YARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTF 420
Query: 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474
ASILPLCARVA+LQHG+EFHCYI + F +HLLLWN+LV+MYAR+GKV EAK +F +S
Sbjct: 421 ASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLS 480
Query: 475 RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534
++DEVTYTSLIAGYG+QGEG A++LFEEM + QIKPDH+TM+AVLSACSHSGLV + +
Sbjct: 481 KKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAEL 540
Query: 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIH 594
F M S++G+ P+LEH+ACM DL+GR GLLNKAKEIIT+MPY PTSA+WATL+GAC IH
Sbjct: 541 LFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIH 600
Query: 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654
N IGEWAAEKLLE RPE+SGYYVLIANMYAA G W KLA++RT MRD GV KIPGC+W
Sbjct: 601 GNMDIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSW 660
Query: 655 VDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEI 705
VD G+ F F V DTS+ QA E LL L ++MK ++ + + + + I
Sbjct: 661 VDVGSEFISFSVGDTSSPQALESKLLLDSLYDVMKHGSLIMTDSYDTGDNI 711
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/720 (58%), Positives = 530/720 (73%), Gaps = 24/720 (3%)
Query: 13 LSVS-QLEKFIPKKWKQ-PINNEHIMRIN------------------LLETLKDFAGRGN 52
LS+S QL+K IP WKQ P H I+ L+ +LKDF +
Sbjct: 10 LSLSKQLQKCIPNSWKQKPTKPFHKPLISSNNSPSSSLSSSFSMVGVLIASLKDFITYNH 69
Query: 53 LSKAFEAFTRIRIT-AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111
LS AF+ F I+ A+S D++ H++ C +K+L+QGKQ+HA I+LG+ +NP+L
Sbjct: 70 LSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHIISLGIHQNPIL 129
Query: 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171
V KL+ FYAS L +A + E SN PL WN++ISLYV++ + +A+ VY++M S+ +
Sbjct: 130 VSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGV 189
Query: 172 RGDNFTYPSVLKACGEMMDVDFGRVVHSCI-DACHEWSLFVHNALVSMYGKFGQVDVARR 230
D++TYPSVLKACGE++D D G VH I ++ +WSLFVHNALV MYG+FG+++VAR
Sbjct: 190 IPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFVHNALVFMYGRFGKLEVARE 249
Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
LFD M RD VSWNTMIS YAS+GLW EAF+LF M+E G+E N+I WNTIAGGCL TGN
Sbjct: 250 LFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGN 309
Query: 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA 350
FKG L+L S+MR LDSVA V+GL ACSH+GA+KLGKEIHG AVR C+ ++NV+N
Sbjct: 310 FKGALKLFSQMRAV-IQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNT 368
Query: 351 LITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
LITMYSRC+DL HAY+LF+ EK +ITWN+MLSG+ H+D +EE +FL REM R GVEPN
Sbjct: 369 LITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPN 428
Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRA-MFNEHLLLWNSLVEMYARSGKVPEAKSV 469
YVTIASILPLCAR+ANLQHGKEFHCY+++R F +LLLWNSLVEMY+RSGKV EA+ V
Sbjct: 429 YVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKV 488
Query: 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529
FD +SR+DEVTYTS+I GYG+ G+G ALKLF EM + IKPDHVTMVAVL ACSHSGLV
Sbjct: 489 FDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLV 548
Query: 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLG 589
+GQ F +M +YGI P++EH++CMVDL+GRAGLL+KAKE+IT M PTSA+WATL+G
Sbjct: 549 AQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIG 608
Query: 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKI 649
AC+IH NT IGEWAA KLLE +P++SGYY+LIANMYAA DK A+ RT MRD G ++
Sbjct: 609 ACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANRLDKEAEARTYMRDSGAKRT 668
Query: 650 PGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVEEI 709
PGCAWVD G PFL DTSN ++ EI P++ L LMKDAGY E S EE EE+
Sbjct: 669 PGCAWVDVGRELCPFLAGDTSNPRSCEISPMMKRLNILMKDAGYAPSEGVVSSEEDFEEL 728
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana] gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana] gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana] gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/677 (59%), Positives = 517/677 (76%), Gaps = 5/677 (0%)
Query: 39 NLLETLKDFAGRGNLSKAFEAFTRIRI---TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+L ++L A G+L AF+ F+ +R+ +A S D+VL S A ++ C V+A G Q
Sbjct: 5 SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
+HA I+ G+E + VLVPKLVTFY++F+L+N A ++ENS+I +PLPWN+LI+ Y ++
Sbjct: 65 VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214
+ E + YK+M S+ IR D FTYPSVLKACGE +DV FGRVVH I+ + ++ SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
L+SMY +F + +ARRLFD+M ERDAVSWN +I+ YAS+G+W EAF+LF +M GVEV+
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
VITWN I+GGCL+TGN+ G L L+SRMR T LD VA +IGL ACS +GA++LGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
A+ Y +NVRN LITMYS+CKDLRHA I+F+ T E S+ TWNS++SGY L+ +EE
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++ L REM +G +PN +T+ASILPLCAR+ANLQHGKEFHCYILRR F ++ +LWNSLV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
++YA+SGK+ AK V DLMS+RDEVTYTSLI GYG QGEG VAL LF+EM ++ IKPDHV
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
T+VAVLSACSHS LV EG++ F +M YGI P L+HF+CMVDLYGRAG L KAK+II
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYAA G W KL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AGY 693
A+VRT MRDLGV+K PGCAW+D + FS F V DTS+ +A YPLL GL +LMKD AGY
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664
Query: 694 VVKEEFCSEEEIVEEIG 710
+ + S+EE+++E+G
Sbjct: 665 AINKVQSSDEELLQEMG 681
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/678 (59%), Positives = 512/678 (75%), Gaps = 6/678 (0%)
Query: 39 NLLETLKDFAGRGNLSKAFEAFTRIRI----TAASHDVVLDSFAHIIFCCGKVKALAQGK 94
+L ++L A G+L AF+ F+ +R+ +A S DVVL S A ++ C V A G
Sbjct: 5 SLFKSLGHLASHGHLHDAFKTFSLLRLQSSPSAVSGDVVLHSAASLLSACVDVLAFVPGL 64
Query: 95 QLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDG 154
Q+HA ++ G+E + LVPKLVTFY++F+L+ A + ENS+I +PLPWN+LI+ Y ++
Sbjct: 65 QIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNE 124
Query: 155 FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHN 213
+ E + YK+M S+ IR D FTYPSVLKACGE +DV GRVVH I+ + ++ SL+V N
Sbjct: 125 LFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCN 184
Query: 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273
AL+SMY +FG V +ARRLFD M ERDAVSWN +I+ YAS G+W EAF+LF +M+ GVEV
Sbjct: 185 ALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEV 244
Query: 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIH 333
+VITWN I+GG L TGN+ G L L+SRMR T LD VA +IGL ACS +GA++LGKEIH
Sbjct: 245 SVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIH 304
Query: 334 GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAE 393
G A+ Y +NVRN LITMYS+C DLR+A+I+F+ T E S+ TWNS++SGY ++ +E
Sbjct: 305 GLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSE 364
Query: 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453
E+++L REM +G +PN++T+ASILPLCAR+ANLQHGKEFHCYILRR F ++ +LWNSL
Sbjct: 365 EASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSL 424
Query: 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
V++YA+SGK+ AK V +LMS DEVTYTSLI GYG QGEGRVAL LF+EM ++ IKPD
Sbjct: 425 VDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDP 484
Query: 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIIT 573
VTMVAVLSACSHS LV EGQ+ F +M YGI P L+HF+CMVDLYGRAG L KAK+II
Sbjct: 485 VTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIH 544
Query: 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633
+MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYA G W K
Sbjct: 545 RMPYEPSGATWATLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSK 604
Query: 634 LAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AG 692
LA+VRT MRDLGVRK PGCAW++ + FS F V DTSN QA + YPLL GL +LMKD AG
Sbjct: 605 LAEVRTIMRDLGVRKDPGCAWINTDSGFSLFSVGDTSNPQACDTYPLLDGLNQLMKDTAG 664
Query: 693 YVVKEEFCSEEEIVEEIG 710
Y + EE S+EE+++EIG
Sbjct: 665 YAINEEESSDEELLQEIG 682
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| TAIR|locus:2825379 | 681 | AT1G71490 "AT1G71490" [Arabido | 0.922 | 0.961 | 0.607 | 1.4e-215 | |
| TAIR|locus:2017744 | 703 | AT1G22830 [Arabidopsis thalian | 0.911 | 0.920 | 0.539 | 3.9e-186 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.963 | 0.804 | 0.335 | 3.1e-106 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.846 | 0.811 | 0.344 | 2.7e-100 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.625 | 0.457 | 0.318 | 2e-98 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.625 | 0.509 | 0.349 | 7.7e-97 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.802 | 0.817 | 0.348 | 1.9e-90 | |
| TAIR|locus:2090444 | 820 | AT3G22150 "AT3G22150" [Arabido | 0.619 | 0.536 | 0.345 | 2.1e-90 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.636 | 0.549 | 0.334 | 3.4e-90 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.619 | 0.506 | 0.347 | 1.5e-89 |
| TAIR|locus:2825379 AT1G71490 "AT1G71490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2083 (738.3 bits), Expect = 1.4e-215, P = 1.4e-215
Identities = 401/660 (60%), Positives = 505/660 (76%)
Query: 39 NLLETLKDFAGRGNLSKAFEAFTRIRI---TAASHDVVLDSFAHIIFCCGKVKALAQGKQ 95
+L ++L A G+L AF+ F+ +R+ +A S D+VL S A ++ C V+A G Q
Sbjct: 5 SLFKSLGHLASHGHLHDAFKTFSLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQ 64
Query: 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGF 155
+HA I+ G+E + VLVPKLVTFY++F+L+N A ++ENS+I +PLPWN+LI+ Y ++
Sbjct: 65 VHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNEL 124
Query: 156 YAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214
+ E + YK+M S+ IR D FTYPSVLKACGE +DV FGRVVH I+ + ++ SL+V NA
Sbjct: 125 FEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNA 184
Query: 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274
L+SMY +F + +ARRLFD+M ERDAVSWN +I+ YAS+G+W EAF+LF +M GVEV+
Sbjct: 185 LISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVS 244
Query: 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG 334
VITWN I+GGCL+TGN+ G L L+SRMR T LD VA +IGL ACS +GA++LGKEIHG
Sbjct: 245 VITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHG 304
Query: 335 SAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEE 394
A+ Y +NVRN LITMYS+CKDLRHA I+F+ T E S+ TWNS++SGY L+ +EE
Sbjct: 305 LAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEE 364
Query: 395 SAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454
++ L REM +G +PN +T+ASILPLCAR+ANLQHGKEFHCYILRR F ++ +LWNSLV
Sbjct: 365 ASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLV 424
Query: 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV 514
++YA+SGK+ AK V DLMS+RDEVTYTSLI GYG QGEG VAL LF+EM ++ IKPDHV
Sbjct: 425 DVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHV 484
Query: 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITK 574
T+VAVLSACSHS LV EG++ F +M YGI P L+HF+CMVDLYGRAG L KAK+II
Sbjct: 485 TVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHN 544
Query: 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634
MPY P+ A WATLL AC IH NT IG+WAAEKLLE +PEN GYYVLIANMYAA G W KL
Sbjct: 545 MPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKL 604
Query: 635 AKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD-AGY 693
A+VRT MRDLGV+K PGCAW+D + FS F V DTS+ +A YPLL GL +LMKD AGY
Sbjct: 605 AEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGY 664
|
|
| TAIR|locus:2017744 AT1G22830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1805 (640.5 bits), Expect = 3.9e-186, P = 3.9e-186
Identities = 357/662 (53%), Positives = 472/662 (71%)
Query: 1 MPPSSSRLILNGLSVSQLEKFIPKKWKQ---PIN-------NEHIMRINLLETLKDFAGR 50
MP S SR IL GL+VS++ KFIP+ WKQ PI+ +E + ++ L + +
Sbjct: 1 MPSSPSRSILRGLTVSEICKFIPQSWKQLPRPISETSKTHDDESVPQV-LFNSFRHCISH 59
Query: 51 GNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPV 110
G L +AF F+ +R + SH+ VL S A ++ C G+QLHA I+ GLE + V
Sbjct: 60 GQLYEAFRTFSLLRYQSGSHEFVLYSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSV 119
Query: 111 LVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR 170
LVPKLVTFY++F+L + A + ENS I +PLPWN+LI Y+R+ + E++ VYK+M S+
Sbjct: 120 LVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKG 179
Query: 171 IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVAR 229
IR D FTYPSV+KAC ++D +GRVVH I+ + H +L+V NAL+SMY +FG+VDVAR
Sbjct: 180 IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVAR 239
Query: 230 RLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG 289
RLFD+M ERDAVSWN +I+ Y S+ EAF+L M GVE +++TWNTIAGGCL G
Sbjct: 240 RLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAG 299
Query: 290 NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE--NV 347
N+ G L + MR + SVA + GL ACSH+GALK GK H +R C ++ NV
Sbjct: 300 NYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV 359
Query: 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
RN+LITMYSRC DLRHA+I+F+ S+ TWNS++SG+ + + +EE++FL +EM SG
Sbjct: 360 RNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGF 419
Query: 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467
PN++T+ASILPL ARV NLQHGKEFHCYILRR + + L+LWNSLV+MYA+SG++ AK
Sbjct: 420 HPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAK 479
Query: 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527
VFD M +RD+VTYTSLI GYG G+G VAL F++M+++ IKPDHVTMVAVLSACSHS
Sbjct: 480 RVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSN 539
Query: 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587
LV EG F +M ++GI +LEH++CMVDLY RAG L+KA++I +PY P+SAM ATL
Sbjct: 540 LVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATL 599
Query: 588 LGACQIHRNTGIGEWAAEKLL-ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
L AC IH NT IGEWAA+KLL ET+PE+ G+Y+L+A+MYA TG W KL V+T + DLGV
Sbjct: 600 LKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659
Query: 647 RK 648
+K
Sbjct: 660 QK 661
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 236/703 (33%), Positives = 377/703 (53%)
Query: 5 SSRLILNGLSVSQLEKFIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIR 64
+S LI +SV L + + P ++ + N L ++ + G +K F +
Sbjct: 62 TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSL--IRSYGDNGCANKCLYLFGLMH 119
Query: 65 ITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSL 124
+ + D +F + CG++ ++ G+ HA ++ G N + LV Y+
Sbjct: 120 SLSWTPDNY--TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRS 177
Query: 125 YNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-RIRGDNFTYPSVLK 183
++A + + ++ + WN +I Y + G AL ++ +M + R DN T +VL
Sbjct: 178 LSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLP 237
Query: 184 ACGEMMDVDFGRVVHSCIDACHEW--SLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV 241
C + G+ +H C E ++FV N LV MY K G +D A +F M +D V
Sbjct: 238 PCASLGTHSLGKQLH-CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296
Query: 242 SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301
SWN M++ Y+ G +++A +LF +MQEE ++++V+TW+ G + G L + +M
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356
Query: 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR-------GCYGEYENVRNALITM 354
+ + V + L C+ VGAL GKEIH A++ +G+ V N LI M
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416
Query: 355 YSRCKDLRHAYILFKMTA--EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--PN 410
Y++CK + A +F + E+ ++TW M+ GY+ A ++ L EMF + PN
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPN 476
Query: 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470
TI+ L CA +A L+ GK+ H Y LR L + N L++MYA+ G + +A+ VF
Sbjct: 477 AFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVF 536
Query: 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV 530
D M ++EVT+TSL+ GYG+ G G AL +F+EM + K D VT++ VL ACSHSG++
Sbjct: 537 DNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMID 596
Query: 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGA 590
+G + F RM +++G+ P EH+AC+VDL GRAG LN A +I +MP P +W L
Sbjct: 597 QGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSC 656
Query: 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIP 650
C+IH +GE+AAEK+ E + G Y L++N+YA G W + ++R+ MR GV+K P
Sbjct: 657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP 716
Query: 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
GC+WV+ + F V D ++ A+EIY +L + +KD GY
Sbjct: 717 GCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGY 759
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 211/612 (34%), Positives = 344/612 (56%)
Query: 88 KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN-SNIRYP--LPWN 144
K L + +HA I +GL + KL+ F + + + I+ P L WN
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWN 103
Query: 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-- 202
+ + AL +Y M S + +++T+P VLK+C + G+ +H +
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 163
Query: 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQL 262
C + L+VH +L+SMY + G+++ A ++FDK RD VS+ +I YAS+G + A +L
Sbjct: 164 GC-DLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222
Query: 263 FVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322
F E+ + +V++WN + G TGN+K LEL M D V + AC+
Sbjct: 223 FDEIPVK----DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM 382
G+++LG+++H +G + NALI +YS+C +L A LF+ K +I+WN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM 442
+ GYTH++ +E+ LF+EM RSG PN VT+ SILP CA + + G+ H YI +R
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 443 -FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
L SL++MYA+ G + A VF+ + + ++ ++I G+ + G + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
M K I+PD +T V +LSACSHSG++ G+ F MT Y + P+LEH+ CM+DL G
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
+GL +A+E+I M P +W +LL AC++H N +GE AE L++ PEN G YVL+
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
+N+YA+ G W+++AK R + D G++K+PGC+ ++ +V F++ D + + +EIY +L
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 682 GGLTELMKDAGY 693
+ L++ AG+
Sbjct: 639 EEMEVLLEKAGF 650
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 2.0e-98, Sum P(2) = 2.0e-98
Identities = 144/452 (31%), Positives = 257/452 (56%)
Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
N +++YA G A ++F ++ + V +WN + GG ++ + + L+ +M+
Sbjct: 434 NAFVASYAKCGSLSYAQRVFHGIRSKTVN----SWNALIGGHAQSNDPRLSLDAHLQMKI 489
Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
DS L ACS + +L+LGKE+HG +R V +++++Y C +L
Sbjct: 490 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCT 549
Query: 364 AYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR 423
LF +KS+++WN++++GY + + +FR+M G++ +++ + C+
Sbjct: 550 VQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSL 609
Query: 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS 483
+ +L+ G+E H Y L+ + ++ + SL++MYA++G + ++ VF+ + + ++ +
Sbjct: 610 LPSLRLGREAHAYALKHLLEDDAFIAC-SLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 668
Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543
+I GYGI G + A+KLFEEM + PD +T + VL+AC+HSGL+ EG + ++M S +
Sbjct: 669 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSF 728
Query: 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITK-MPYTPTSAMWATLLGACQIHRNTGIGEW 602
G+ P L+H+AC++D+ GRAG L+KA ++ + M +W +LL +C+IH+N +GE
Sbjct: 729 GLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEK 788
Query: 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN-VF 661
A KL E PE YVL++N+YA G W+ + KVR M ++ +RK GC+W++ VF
Sbjct: 789 VAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 848
Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
S F+V + +EI L L + GY
Sbjct: 849 S-FVVGERFLDGFEEIKSLWSILEMKISKMGY 879
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 712 (255.7 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 158/452 (34%), Positives = 249/452 (55%)
Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
NT++ Y+ G A +F EM + +V+++ ++ G R G ++L M
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGLAGEAVKLFEEME- 389
Query: 304 QETYLDSVATVIG-LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLR 362
+E V TV L C+ L GK +H G V NAL+ MY++C ++
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449
Query: 363 HAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLC 421
A ++F K II+WN+++ GY+ A E+ LF + P+ T+A +LP C
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509
Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
A ++ G+E H YI+R F++ + NSLV+MYA+ G + A +FD ++ +D V++
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVA-NSLVDMYAKCGALLLAHMLFDDIASKDLVSW 568
Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
T +IAGYG+ G G+ A+ LF +M + I+ D ++ V++L ACSHSGLV EG + F M
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 628
Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601
I P +EH+AC+VD+ R G L KA I MP P + +W LL C+IH + + E
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688
Query: 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661
AEK+ E PEN+GYYVL+AN+YA W+++ ++R + G+RK PGC+W++
Sbjct: 689 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Query: 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
+ F+ D+SN + + I L + M + GY
Sbjct: 749 NIFVAGDSSNPETENIEAFLRKVRARMIEEGY 780
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 203/583 (34%), Positives = 319/583 (54%)
Query: 115 LVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGD 174
+VT + A L + R WN ++S + + EALC + M +
Sbjct: 92 VVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLN 151
Query: 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS-LFVHNALVSMYGKFGQVDVARRLFD 233
+++ SVL AC + D++ G VHS I S +++ +ALV MY K G V+ A+R+FD
Sbjct: 152 EYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD 211
Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293
+M +R+ VSWN++I+ + G EA +F M E VE + +T ++ C K
Sbjct: 212 EMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKV 271
Query: 294 VLELLSRM-RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA-VRGCYGEYENVRNAL 351
E+ R+ + + D + + + + +K + I S +R E ++
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAE-----TSM 326
Query: 352 ITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY 411
I+ Y+ + A ++F AE+++++WN++++GYT EE+ LF + R V P +
Sbjct: 327 ISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTH 386
Query: 412 VTIASILPLCARVANLQHGKEFHCYILRRAM-FN----EHLLLWNSLVEMYARSGKVPEA 466
+ A+IL CA +A L G + H ++L+ F + + + NSL++MY + G V E
Sbjct: 387 YSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEG 446
Query: 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526
VF M RD V++ ++I G+ G G AL+LF EM ++ KPDH+TM+ VLSAC H+
Sbjct: 447 YLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHA 506
Query: 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586
G V EG+ F MT +G+ P +H+ CMVDL GRAG L +AK +I +MP P S +W +
Sbjct: 507 GFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGS 566
Query: 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646
LL AC++HRN +G++ AEKLLE P NSG YVL++NMYA G W+ + VR MR GV
Sbjct: 567 LLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGV 626
Query: 647 RKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
K PGC+W+ F+V D S+ + ++I+ LL L M+
Sbjct: 627 TKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669
|
|
| TAIR|locus:2090444 AT3G22150 "AT3G22150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
Identities = 156/451 (34%), Positives = 267/451 (59%)
Query: 244 NTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
N+++ Y+ G ++F +F+ M+E +V++WNT+ ++ G L L+ M+
Sbjct: 357 NSLMVMYSRCGSVHKSFGVFLSMRER----DVVSWNTMISAFVQNGLDDEGLMLVYEMQK 412
Query: 304 QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363
Q +D + L A S++ ++GK+ H +R ++E + + LI MYS+ +R
Sbjct: 413 QGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGI-QFEGMNSYLIDMYSKSGLIRI 471
Query: 364 AYILFKMT--AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421
+ LF+ + AE+ TWNSM+SGYT E++ +FR+M + PN VT+ASILP C
Sbjct: 472 SQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPAC 531
Query: 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTY 481
+++ ++ GK+ H + +R+ + ++++ + ++LV+MY+++G + A+ +F R+ VTY
Sbjct: 532 SQIGSVDLGKQLHGFSIRQYL-DQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTY 590
Query: 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541
T++I GYG G G A+ LF M ++ IKPD +T VAVLSACS+SGL+ EG K FE M
Sbjct: 591 TTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMRE 650
Query: 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSA-MWATLLGACQIHRNTGIG 600
+Y I P EH+ C+ D+ GR G +N+A E + + A +W +LLG+C++H +
Sbjct: 651 VYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELA 710
Query: 601 EWAAEKLLE-TRPEN-SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAG 658
E +E+L + + +N SGY VL++NMYA W + KVR MR+ G++K G + ++
Sbjct: 711 ETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIA 770
Query: 659 NVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689
+ F+ D + + EIY ++ GL + M+
Sbjct: 771 GYVNCFVSRDQEHPHSSEIYDVIDGLAKDMR 801
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 154/461 (33%), Positives = 252/461 (54%)
Query: 236 LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295
LE + N +I YA G ++ ++F M ++I+WN+I +
Sbjct: 278 LESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR----DLISWNSIIKAYELNEQPLRAI 333
Query: 296 ELLSRMRTQETYLDSVATVIGLGAC-SHVGALKLGKEIHGSAVR-GCYGEYENVRNALIT 353
L MR D + T+I L + S +G ++ + + G +R G + E + NA++
Sbjct: 334 SLFQEMRLSRIQPDCL-TLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVV 392
Query: 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYV 412
MY++ + A +F +I+WN+++SGY A E+ ++ M G + N
Sbjct: 393 MYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQG 452
Query: 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472
T S+LP C++ L+ G + H +L+ ++ + ++ SL +MY + G++ +A S+F
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVV-TSLADMYGKCGRLEDALSLFYQ 511
Query: 473 MSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532
+ R + V + +LIA +G G G A+ LF+EM +KPDH+T V +LSACSHSGLV EG
Sbjct: 512 IPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEG 571
Query: 533 QKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592
Q FE M + YGI P L+H+ CMVD+YGRAG L A + I M P +++W LL AC+
Sbjct: 572 QWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACR 631
Query: 593 IHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC 652
+H N +G+ A+E L E PE+ GY+VL++NMYA+ G W+ + ++R+ G+RK PG
Sbjct: 632 VHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGW 691
Query: 653 AWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
+ ++ N F + ++ +E+Y L L +K GY
Sbjct: 692 SSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGY 732
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| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 156/449 (34%), Positives = 250/449 (55%)
Query: 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305
++ AY+ +A +LF E+ G NV++W + G L+ + ++L S M+ +
Sbjct: 336 LMVAYSKCTAMLDALRLFKEI---GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG 392
Query: 306 TYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365
+ + L A + E+H V+ Y V AL+ Y + + A
Sbjct: 393 VRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAA 448
Query: 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV- 424
+F +K I+ W++ML+GY E + +F E+ + G++PN T +SIL +CA
Sbjct: 449 KVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATN 508
Query: 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL 484
A++ GK+FH + ++ + + L + ++L+ MYA+ G + A+ VF +D V++ S+
Sbjct: 509 ASMGQGKQFHGFAIKSRL-DSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567
Query: 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544
I+GY G+ AL +F+EM K ++K D VT + V +AC+H+GLV EG+K F+ M
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627
Query: 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAA 604
I P EH +CMVDLY RAG L KA ++I MP S +W T+L AC++H+ T +G AA
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687
Query: 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPF 664
EK++ +PE+S YVL++NMYA +G W + AKVR M + V+K PG +W++ N F
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSF 747
Query: 665 LVDDTSNVQAQEIYPLLGGLTELMKDAGY 693
L D S+ +IY L L+ +KD GY
Sbjct: 748 LAGDRSHPLKDQIYMKLEDLSTRLKDLGY 776
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9I6 | PP116_ARATH | No assigned EC number | 0.5997 | 0.9464 | 0.9867 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00021816001 | SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (733 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 710 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-133 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-110 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-63 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-60 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 412 bits (1061), Expect = e-133
Identities = 222/658 (33%), Positives = 345/658 (52%), Gaps = 41/658 (6%)
Query: 47 FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLE 106
+A G +A + R+ DV +F ++ CG + LA+G+++HA + G E
Sbjct: 162 YAKAGYFDEALCLYHRMLWAGVRPDVY--TFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219
Query: 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQM 166
+ +V L+T Y +A + + R + WN +IS Y +G E L ++ M
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 167 QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQV 225
+ + D T SV+ AC + D GR +H + + V N+L+ MY G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 226 DVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
A ++F +M +DAVSW MIS Y GL +A + + M+++ V + IT
Sbjct: 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-------- 391
Query: 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYE 345
+A+V L AC+ +G L +G ++H A R Y
Sbjct: 392 -------------------------IASV--LSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405
V NALI MYS+CK + A +F EK +I+W S+++G + E+ FR+M +
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484
Query: 406 GVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465
++PN VT+ + L CAR+ L GKE H ++LR + + L N+L+++Y R G++
Sbjct: 485 -LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNY 542
Query: 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
A + F+ +D V++ L+ GY G+G +A++LF M ++ + PD VT +++L ACS
Sbjct: 543 AWNQFNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWA 585
SG+V +G + F M Y I P L+H+AC+VDL GRAG L +A I KMP TP A+W
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645
LL AC+IHR+ +GE AA+ + E P + GYY+L+ N+YA G WD++A+VR MR+ G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 646 VRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSEE 703
+ PGC+WV+ FL DD S+ Q +EI +L G E MK +G E +E
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (895), Expect = e-110
Identities = 180/558 (32%), Positives = 295/558 (52%), Gaps = 44/558 (7%)
Query: 147 ISLYVRDGFYAEALCVYKQMQSRRIRG----DNFTYPSVLKACGEMMDVDF-GRVVHSCI 201
I V G + EAL +++ + TY ++++AC + + V
Sbjct: 94 IEKLVACGRHREALELFEIL---EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE 150
Query: 202 DACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQ 261
+ E ++ N ++ M+ K G + ARRLFD+M ER+ SW T+I G ++EAF
Sbjct: 151 SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 262 LFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321
LF EM E+G + R V+ L A +
Sbjct: 211 LFREMWEDGSDAE------------------------PRT-----------FVVMLRASA 235
Query: 322 HVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNS 381
+G+ + G+++H ++ V ALI MYS+C D+ A +F EK+ + WNS
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNS 295
Query: 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441
ML+GY +EE+ L+ EM SGV + T + ++ + +R+A L+H K+ H ++R
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF 501
F ++ +LV++Y++ G++ +A++VFD M R++ +++ +LIAGYG G G A+++F
Sbjct: 356 -FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR 561
E M + P+HVT +AVLSAC +SGL +G + F+ M+ + I P+ H+ACM++L GR
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621
GLL++A +I + P+ PT MWA LL AC+IH+N +G AAEKL PE YV++
Sbjct: 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534
Query: 622 ANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLL 681
N+Y ++G + AKV ++ G+ P C W++ F D + Q++EIY L
Sbjct: 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL 594
Query: 682 GGLTELMKDAGYVVKEEF 699
L + + + GYV +E
Sbjct: 595 DELMKEISEYGYVAEENE 612
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 1e-63
Identities = 146/501 (29%), Positives = 245/501 (48%), Gaps = 51/501 (10%)
Query: 75 DSFAHIIFCCGKVKALAQGKQLHACAIA----LGLEKNPVLVPKLVTFYASFSLYNNACF 130
D++ + C +A+ +G ++ + A++ LG+ ++ V F +A +
Sbjct: 87 DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV----HAWY 142
Query: 131 LVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190
+ R WN+L+ Y + G++ EALC+Y +M +R D +T+P VL+ CG + D
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202
Query: 191 VDFGRVVHS-CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISA 249
+ GR VH+ + E + V NAL++MY K G V AR +FD+M RD +SWN MIS
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 250 YASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD 309
Y G E +LF M+E V+ +++T ++ C ELL R
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISAC----------ELLGDER------- 305
Query: 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFK 369
LG+E+HG V+ + +V N+LI MY A +F
Sbjct: 306 ------------------LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 370 MTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429
K ++W +M+SGY +++ + M + V P+ +TIAS+L CA + +L
Sbjct: 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYG 489
G + H + R ++++ N+L+EMY++ + +A VF + +D +++TS+IAG
Sbjct: 408 GVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466
Query: 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL 549
+ AL F +M +KP+ VT++A LSAC+ G ++ G K+ GI
Sbjct: 467 LNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCG-KEIHAHVLRTGI--GF 522
Query: 550 EHFA--CMVDLYGRAGLLNKA 568
+ F ++DLY R G +N A
Sbjct: 523 DGFLPNALLDLYVRCGRMNYA 543
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 5e-60
Identities = 127/449 (28%), Positives = 213/449 (47%), Gaps = 48/449 (10%)
Query: 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEW-SLFVH 212
G +AL + + MQ R+ D Y ++ + C V+ G V S + H + +
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 213 NALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
NA++SM+ +FG++ A +F KM ERD SWN ++ YA G + EA L+ M GV
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI 332
+V T+ + LRT C + L G+E+
Sbjct: 185 PDVYTFPCV----LRT-------------------------------CGGIPDLARGREV 209
Query: 333 HGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA 392
H VR + +V NALITMY +C D+ A ++F + I+WN+M+SGY
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 393 EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452
E LF M V+P+ +TI S++ C + + + G+E H Y+++ F + + NS
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNS 328
Query: 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
L++MY G EA+ VF M +D V++T++I+GY G AL+ + M ++ + PD
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 513 HVTMVAVLSACSHSGLVVEGQKQFE-----RMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567
+T+ +VLSAC+ G + G K E + S Y + ++++Y + ++K
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVAN-----ALIEMYSKCKCIDK 442
Query: 568 AKEIITKMPYTPTSAMWATLLGACQIHRN 596
A E+ +P + + + G +R
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRC 471
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-32
Identities = 92/433 (21%), Positives = 184/433 (42%), Gaps = 43/433 (9%)
Query: 40 LLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHAC 99
L ++ G +A E F + + ++ ++ C +K++ K ++
Sbjct: 90 LCSQIEKLVACGRHREALELFEILEA-GCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148
Query: 100 AIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159
+ G E + ++ +++ + + +A L + R W +I V G Y EA
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI---DACHEWSLFVHNALV 216
++++M + T+ +L+A + G+ +H C+ + FV AL+
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD--TFVSCALI 266
Query: 217 SMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276
MY K G ++ AR +FD M E+ V+WN+M++ YA G +EA L+ EM++ GV ++
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
Query: 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSA 336
T++ + + S + L+ K+ H
Sbjct: 327 TFSIM-----------------------------------IRIFSRLALLEHAKQAHAGL 351
Query: 337 VRGCYGEYENVRN-ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEES 395
+R + + V N AL+ +YS+ + A +F K++I+WN++++GY + ++
Sbjct: 352 IRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410
Query: 396 AFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455
+F M GV PN+VT ++L C + G E + + + ++E
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470
Query: 456 MYARSGKVPEAKS 468
+ R G + EA +
Sbjct: 471 LLGREGLLDEAYA 483
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-15
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 398 LFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCY-ILRRAMFNEHLLLWNSLVEM 456
+F EM +GVE N T +++ CAR Q K F Y I+R +++N+L+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 457 YARSGKVPEAKSVFDLMSRR------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510
+SG V A V M D +T +L+ G+ A ++++ +++ IK
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570
+++CS G ++ M G+ P F+ +VD+ G AG L+KA E
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 571 IITKMP---YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609
I+ + +++L+GAC + W +K LE
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGAC-----SNAKNW--KKALE 705
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 3e-12
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGC 285
D V++NT+I Y KG +EA +LF EM++ G++ NV T++ + G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525
D VTY +LI GY +G+ ALKLF EM K IKP+ T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 79/378 (20%), Positives = 149/378 (39%), Gaps = 75/378 (19%)
Query: 223 GQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA 282
G + V R + + L+ D + T+IS A G F++F EM GVE NV T+ +
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 283 GGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYG 342
GC R G MR++ D V
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRV------------------------------- 543
Query: 343 EYENVRNALITMYSRCKDLRHAY-ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFRE 401
V NALI+ + + A+ +L +M AE TH
Sbjct: 544 ----VFNALISACGQSGAVDRAFDVLAEMKAE-------------TH------------- 573
Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
++P+++T+ +++ CA + KE + ++ ++ V ++ G
Sbjct: 574 ----PIDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 462 KVPEAKSVFDLMSRR----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV 517
A S++D M ++ DEV +++L+ G G+ A ++ ++ K IK V+
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
Query: 518 AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP- 576
+++ ACS++ + + +E + SI + P + ++ L KA E++++M
Sbjct: 689 SLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 577 --YTPTSAMWATLLGACQ 592
P + ++ LL A +
Sbjct: 748 LGLCPNTITYSILLVASE 765
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 143 WNLLISLYVRDGFYAEALCVYKQM--QSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200
+N LIS + G A V +M ++ I D+ T +++KAC VD + V+
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 201 IDACHEW----SLFVHNALVSMYGKFGQVDVARRLFDKMLER----DAVSWNTMISAYAS 252
I HE+ + V+ V+ + G D A ++D M ++ D V ++ ++
Sbjct: 605 I---HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
Query: 253 KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303
G +AF++ + +++G+++ ++++++ G C N+K LEL +++
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-08
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271
V++N++IS Y G +EA +LF EM+E+GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-08
Identities = 63/327 (19%), Positives = 138/327 (42%), Gaps = 23/327 (7%)
Query: 215 LVSMYGKFGQVDVARRLFDKM----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270
L+S K G+VD +F +M +E + ++ +I A G +AF + M+ +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 271 VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG--LGACSHVG---- 324
V+ + + +N + C ++G ++L+ M+ + +D +G + AC++ G
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 325 ALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLS 384
A ++ + IH ++G Y N+ S+ D A ++ +K + S
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNS----CSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 385 GYT----HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440
H +++ + ++ + G++ V+ +S++ C+ N + E + I +
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KS 712
Query: 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR----DEVTYTSLIAGYGIQGEGRV 496
+ N+L+ ++P+A V M R + +TY+ L+ + + V
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 497 ALKLFEEMNKNQIKPDHVTMVAVLSAC 523
L L + ++ IKP+ V + C
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275
V++NT+I G +EA +LF EM+E G+E +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-06
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 450 WNSLVEMYARSGKVPEAKSVFDLMSRR----DEVTYTSLIAGY 488
+N+L++ Y + GKV EA +F+ M +R + TY+ LI G
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC 185
+N LI Y + G EAL ++ +M+ R I+ + +TY ++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 3e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 234 KMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQ 267
K L+ D V++NT+I G EA +L EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-06
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 213 NALVSMYGKFGQVDVARRLFDKMLER----DAVSWNTMISAYA 251
N L+ Y K G+V+ A +LF++M +R + +++ +I
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 374 KSIITWNSMLSGYTHLDCAEESAF-LFREMFRSGVEPNYVT 413
++T+N+++ GY EE A LF EM + G++PN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEE-ALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE 272
++N ++ A A G A + EM+ G++
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509
VTY SLI+GY G+ AL+LF+EM + +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD 512
VTY +LI G G AL+LF+EM + I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN 410
+T+N+++ G EE+ LF+EM G+EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 477 DEVTYTSLIAGYGIQGEGRV--ALKLFEEM 504
D VTY +LI G GRV A++L +EM
Sbjct: 6 DVVTYNTLIDGLCR--AGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407
+T+NS++SGY EE+ LF+EM GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.44 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.34 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.29 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.22 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.1 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.07 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.91 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.43 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.34 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.23 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.99 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.92 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.84 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.58 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.25 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.15 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.13 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.08 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.07 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.06 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.82 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.7 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.55 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.52 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.48 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.37 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.34 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.99 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 95.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.68 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.6 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.16 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.78 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.62 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.54 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.46 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.35 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.09 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.08 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.84 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.78 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.36 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.66 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.65 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.58 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.54 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.21 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.67 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.54 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.1 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.38 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.04 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.94 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.54 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.41 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.4 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.97 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.64 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 88.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.05 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.51 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.29 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.84 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.46 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.84 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.49 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 85.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.08 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.84 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.94 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 83.1 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.35 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.26 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.59 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.52 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.34 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.68 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.59 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.58 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.28 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.24 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.15 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-107 Score=918.87 Aligned_cols=671 Identities=34% Similarity=0.617 Sum_probs=651.0
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (710)
+.++..+++.++.+|++.|++++|+.+|+.|.+.|+.|+.. +|..++.+|.+.+.+..+.++|..+++.+..++..++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDED--AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 56777889999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD 192 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 192 (710)
|+|+.+|+++|+++.|+++|++|+++|+++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++.
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 193 FGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 193 ~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
.++++|..+. .|+.||+.++|+|+.+|+++|+++.|.++|++|+++|.++||++|.+|++.|+.++|+++|.+|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCc------------------------------------------------------------------eehHHHHHHHH
Q 005174 272 EVN------------------------------------------------------------------VITWNTIAGGC 285 (710)
Q Consensus 272 ~p~------------------------------------------------------------------~~~~~~li~~~ 285 (710)
.|| ..+||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 654 56777778888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY 365 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 365 (710)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.++..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 366 ILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 366 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
++|++|.++|+++||++|.+|+++|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.++|..+.+.| +.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g-~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG-IGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC-CCc
Confidence 999999999999999999999999999999999999986 699999999999999999999999999999999999 999
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
+..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAE 605 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 605 (710)
.|++++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999977899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHH
Q 005174 606 KLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLT 685 (710)
Q Consensus 606 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~ 685 (710)
++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|..+|.+||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcccCCccccH--HHHHHh
Q 005174 686 ELMKDAGYVVKEEFCSE--EEIVEE 708 (710)
Q Consensus 686 ~~~~~~g~~~~~~~~~~--~~~~~~ 708 (710)
.+|++.||+|+++++.+ ||-+|+
T Consensus 762 ~~~~~~g~~~~~~~~~~~~~~~k~~ 786 (857)
T PLN03077 762 EKMKASGLAGSESSSMDEIEVSKDD 786 (857)
T ss_pred HHHHhCCcCCCcchhccccHHHHHH
Confidence 99999999999997763 333444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-86 Score=733.50 Aligned_cols=530 Identities=34% Similarity=0.569 Sum_probs=502.0
Q ss_pred CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHH
Q 005174 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNA 214 (710)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~ 214 (710)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++.+.+.+++..+. .|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577799999999999999999999999998764 78999999999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHH
Q 005174 215 LVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGV 294 (710)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 294 (710)
|+.+|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll------------ 231 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML------------ 231 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH------------
Confidence 99999999999999999999999999999999999999999988888888888777777665555554
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 005174 295 LELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK 374 (710)
Q Consensus 295 ~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (710)
.+|+..|..+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++
T Consensus 232 -----------------------~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 232 -----------------------RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred -----------------------HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 455555555666666666666677777778899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHh
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 454 (710)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.++.|.++|..+.+.| ++++..++++|+
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li 367 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALV 367 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
+|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++.+++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCcc
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYV 694 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~ 694 (710)
..+|..|+++|++.|+|++|.++++.|++.|++|.||+|||++++++|.|+.+|.+||+..+||.+|++|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccH
Q 005174 695 VKEEFCSE 702 (710)
Q Consensus 695 ~~~~~~~~ 702 (710)
|++.++.+
T Consensus 608 ~~~~~~~~ 615 (697)
T PLN03081 608 AEENELLP 615 (697)
T ss_pred CCcchhhc
Confidence 99998754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-77 Score=675.00 Aligned_cols=612 Identities=22% Similarity=0.305 Sum_probs=533.7
Q ss_pred CCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhC----CCCCCccHH
Q 005174 69 SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS----NIRYPLPWN 144 (710)
Q Consensus 69 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 144 (710)
.|+.. +++.++.++.+.|.+++|..++..+.+.|++|+..++..++..|.+.+.++.|..+++.+ ..+++..+|
T Consensus 48 ~~~~~--~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTH--DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchh--hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 45555 899999999999999999999999999999999999999999999999999999999864 356778899
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcC
Q 005174 145 LLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFG 223 (710)
Q Consensus 145 ~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g 223 (710)
++|..|++.|+++.|+++|++|. .||..+|+.++.+|++.|++++|..+++.|. .|+.||..+|+.++.++++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 4799999999999999999999999999999 999999999999999999999
Q ss_pred CHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 224 QVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 224 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
++..+.+++..|. .+|+.+||++|.+|++.|++++|.++|++| ..||..+||+||.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999884 579999999999999999999999999999 56899999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (710)
+|...|+.||..||+.++.+|+..|+++.+.+++..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++|
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (710)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.| +.++..++|+|+++|++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+|++++|.++|++|.++|+++||+||.+|++.|+.++|+.+|++|.. +++||..||+.+|.+|++.|+++.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 59999999999999999999999999999998
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCC----
Q 005174 540 TSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET--RPE---- 613 (710)
Q Consensus 540 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~---- 613 (710)
.+. |+.|+..++++|+++|+++|++++|.++|+++ .||..+|++++.+|.++|+.++|.+.++++.+. .|+
T Consensus 516 ~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 516 LRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 876 77766666666666666555555555555554 345555555555555555555554444444332 222
Q ss_pred -------------------------------CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEE-------
Q 005174 614 -------------------------------NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV------- 655 (710)
Q Consensus 614 -------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------- 655 (710)
+..+|.+++++|+++|++++|.++++.|. +++. ...|-
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC-HHHHHHHHHHHH
Confidence 34678888888888888888888877773 2211 12231
Q ss_pred -----EECCeEEEEeeCCCCCcchhhHHHHHH-------------HHHHHHHHcCcccCCcccc
Q 005174 656 -----DAGNVFSPFLVDDTSNVQAQEIYPLLG-------------GLTELMKDAGYVVKEEFCS 701 (710)
Q Consensus 656 -----~~~~~~~~~~~~~~~~p~~~~~~~~l~-------------~l~~~~~~~g~~~~~~~~~ 701 (710)
+++..+...+ .+..|+....|..|. ++++.|++.|++++.+++|
T Consensus 669 ~~~~~e~~e~~a~~l--~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 669 IHRHVELGELAAQHI--FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HcCChHHHHHHHHHH--HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 1111111111 136777777777663 7889999999998877664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=591.66 Aligned_cols=471 Identities=21% Similarity=0.354 Sum_probs=436.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHhC-CCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRITA-ASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
...|+.++.+|.+.|++++|+++|+.|...+ ..|+.. +|..++.+|++.++++.+.++|..+.+.|+.||..+++.|
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~--t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS--TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3489999999999999999999999998765 678888 9999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHH
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 195 (710)
+.+|+++|+++.|+++|++|+.||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc
Q 005174 196 VVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN 274 (710)
Q Consensus 196 ~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 274 (710)
++|..+. .|+.+|..+||+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred eehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 005174 275 VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 354 (710)
..||++++.+|++.|++++|.+++..|.+.| +.++..++++|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-----------------------------------~~~d~~~~~~Li~~ 369 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-----------------------------------FPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhC-----------------------------------CCCCeeehHHHHHH
Confidence 7777777777777766666666666666555 45555566899999
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD- 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 512 (710)
+.|.+..++.|+..+|+.++++|++.|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCC
Confidence 9998764499999999999999999999999999999986 67899999999999999999999999998875 4564
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 568999999999999999999999999887 7754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-68 Score=589.47 Aligned_cols=531 Identities=15% Similarity=0.175 Sum_probs=481.1
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCC-CCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCch
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAAS-HDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL 111 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (710)
++++...+..++..|.+.|++++|+++|+.|...|+. ++.. ++..++.+|.+.|.+..|..++..|.. ||..+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v--~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI--YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH--HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 4567888999999999999999999999999999865 4544 778899999999999999999988763 89999
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCC----CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSN----IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
|+.++.+|++.|+++.|.++|+.|. .||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 578899999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhCCChHHHH
Q 005174 188 MMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML------ERDAVSWNTMISAYASKGLWKEAF 260 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~ 260 (710)
.|+++.|..+|+.|. .|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999 9999999999999999999999999999999994 579999999999999999999999
Q ss_pred HHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 005174 261 QLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGC 340 (710)
Q Consensus 261 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~ 340 (710)
++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 005174 341 YGEYENVRNALITMYSRCKDLRHAYILFKMTA----EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS 416 (710)
Q Consensus 341 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 416 (710)
+.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (710)
++.+|++.|+++.|.++|..|.+.| +.||..+|++++.+|.+ ++++|.++.+.+.. |+. .......+..+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~ 830 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHH
Confidence 9999999999999999999999999 99999999999977442 34444444332221 110 011112233456
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|+.+|++|.+.|+.||..||+.++.++.+.+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|.
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 9999999999999999999999998888888888888888887655 6778889999999998543 478999999993
Q ss_pred ---CCCCH
Q 005174 577 ---YTPTS 581 (710)
Q Consensus 577 ---~~p~~ 581 (710)
+.|+.
T Consensus 908 ~~Gi~p~~ 915 (1060)
T PLN03218 908 SLGVVPSV 915 (1060)
T ss_pred HcCCCCCc
Confidence 45554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=568.68 Aligned_cols=555 Identities=18% Similarity=0.220 Sum_probs=466.9
Q ss_pred CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHH
Q 005174 137 IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRI-RGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNAL 215 (710)
Q Consensus 137 ~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~l 215 (710)
.++...|..++..+++.|++++|+++|++|.+.|+ .|+..+++.++.+|.+.|..+.|..++..|.. ||..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 34566788888899999999999999999988885 46777788888999988999989888877753 889999999
Q ss_pred HHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCCh
Q 005174 216 VSMYGKFGQVDVARRLFDKML----ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291 (710)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 291 (710)
+.+|++.|+++.|.++|+.|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999984 4788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHh--hcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR--GCYGEYENVRNALITMYSRCKDLRHAYILFK 369 (710)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (710)
++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.. .|+.||..+|++||.+|+++|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 5788999999999999999999999999999
Q ss_pred hcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 370 MTAE----KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 370 ~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
.|.+ ++..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.| +.|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~~p 682 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKL 682 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence 9875 45689999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMS----RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
+..+|++||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 67999999999999999999999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH----hcC-------------------CHHHHHHHHHhC---
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYG----RAG-------------------LLNKAKEIITKM--- 575 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m--- 575 (710)
+|++.|++++|.++|..|.+. |+.||..+|++++.++. +++ ..++|..+|++|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999887 99999999999987643 222 346799999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCe--
Q 005174 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE-TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGC-- 652 (710)
Q Consensus 576 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-- 652 (710)
...||..+|+.++.++...+..+.+...++.+.. -.+.+..+|.+|++.+++. .++|..++++|..+|+.+....
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~ 919 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKK 919 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccccc
Confidence 3789999999999777777887777666665432 2455678899999987432 3689999999999999654421
Q ss_pred -eEEEECCeEEEEeeCCCCCcch--hhHHHHHHHHHHHHHHcCcccCCccccHHHHHH
Q 005174 653 -AWVDAGNVFSPFLVDDTSNVQA--QEIYPLLGGLTELMKDAGYVVKEEFCSEEEIVE 707 (710)
Q Consensus 653 -~~~~~~~~~~~~~~~~~~~p~~--~~~~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~ 707 (710)
-|+ +-....-+.. ..+..-|..|+.....--.-|.......+|.+|
T Consensus 920 ~~~~---------~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~ 968 (1060)
T PLN03218 920 SPIV---------IDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKE 968 (1060)
T ss_pred CceE---------EEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccce
Confidence 132 1111122333 334455667776654322445555434444444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=330.25 Aligned_cols=586 Identities=13% Similarity=0.016 Sum_probs=329.7
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccC
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 123 (710)
...+...|++++|+..|+.+...++.... .+..+..++...|+++.|...+..+++.. +.+...+..+...+.+.|
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLP---ALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 33445677777777777777665433211 33444555566677777777777776654 444555666666777777
Q ss_pred ChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHH
Q 005174 124 LYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSC 200 (710)
Q Consensus 124 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 200 (710)
++++|...++.+.. .+...|+.+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+.+.|...+..
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 77777777766542 233456666667777777777777777765532 11233444555555666666666666666
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh
Q 005174 201 IDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277 (710)
Q Consensus 201 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 277 (710)
+....+........++..|.+.|++++|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 501 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPA 501 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHH
Confidence 5522223334444555566666666666666666532 244556666666666666666666666665432 123344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 005174 278 WNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357 (710)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 357 (710)
+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+...+..+.+.. +.+...+..+...|.+
T Consensus 502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 502 AANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH
Confidence 5555556666666666666666665543 1233445555555555666666666666555443 2333445555666666
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 358 CKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.|++++|..+++.+.. .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..++
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666655532 244556666666666666666666666655542 223444555555555666666666666
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (710)
..+.+.. +.+...+..++..+...|++++|..+++.+.+. +...+..+...+...|++++|+..|+++... .|
T Consensus 659 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 734 (899)
T TIGR02917 659 KRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--AP 734 (899)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CC
Confidence 6655543 444555566666666666666666666555432 3445555555566666666666666665553 23
Q ss_pred ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 512 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
+..++..+..++.+.|++++|.+.++.+.+. ...+...+..+...|.+.|+.++|.+.|+++. .+++..+++.+..
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3344555555555566666666665555543 12225555555555666666666666555541 2234455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.+...|+ ..|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555 445555555555555555555555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=326.85 Aligned_cols=596 Identities=11% Similarity=-0.019 Sum_probs=469.0
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
+.+...+..+...+...|++++|...++.+.+..+.... ........+...|+++.|...+..+++.+ +.+...+.
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~ 299 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL---AHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALL 299 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch---HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHH
Confidence 345567777888888899999999999888876544322 33333444556788889999888888765 33334455
Q ss_pred HHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC
Q 005174 114 KLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190 (710)
Q Consensus 114 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (710)
.+...+...|++++|...|+.... .+...+..+...+.+.|++++|...++.+.... ..+...+..+...+...|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 566777888999999988887642 344567778888888999999999998887653 3355677788888888899
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005174 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQ 267 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 267 (710)
+++|..+++.+....+.+...+..+...+...|++++|...|+.+.+. +...+..++..+.+.|++++|..+++++.
T Consensus 379 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 379 FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999998888887445556778888888888899999999988887432 34456677788888999999999998887
Q ss_pred HcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhH
Q 005174 268 EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV 347 (710)
Q Consensus 268 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 347 (710)
.. .+++..+|+.+...+...|++++|.+.|+++.+... .+...+..+...+...|+++.+...+..+.+.. +.+..+
T Consensus 459 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 535 (899)
T TIGR02917 459 KK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRA 535 (899)
T ss_pred Hh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHH
Confidence 65 445677888888899999999999999998876532 234456666777888889999999988888765 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 424 (710)
+..+...|.+.|+.++|...|+++.. .+...+..++..|...|++++|..+++.+.... +.+...+..+...+...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 88888888889999999999887743 345677788888899999999999999887653 55677888888888889
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
|+++.|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998888765 55677788888889999999999999987764 25678888888999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTP 579 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p 579 (710)
+.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++. .+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9988764 446667777888888889999999999888764 5666777888889999999999988888772 334
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+...+..+...|...|+.+.|...++++.+..|+++..+..++.++...|+ ++|++.+++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 677788888888888999999999999999999988889999999999998 88888888876643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-24 Score=252.58 Aligned_cols=593 Identities=11% Similarity=0.012 Sum_probs=400.0
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhh-------------HHHHHHHHhcccCchHhHHHHHHHH
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLD-------------SFAHIIFCCGKVKALAQGKQLHACA 100 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-------------~~~~ll~~~~~~~~~~~a~~~~~~~ 100 (710)
+.++..+..++..+...|+.++|.+.++++.+..+....... ....+.+.+...|++++|.+.++.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334555566666666666666666666666654332211100 0112223445556666666666666
Q ss_pred HHhCCCCCCchhh-HHHHHHHccCChhHHHHhHhhCCCC---CCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCC----
Q 005174 101 IALGLEKNPVLVP-KLVTFYASFSLYNNACFLVENSNIR---YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR---- 172 (710)
Q Consensus 101 ~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~---- 172 (710)
++.+ +++..... .+.......|+.++|++.|+++... ++..+..+...+...|++++|+..++++.+....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 5543 22221111 1111122346666666666665432 2234555666666666666666666666442100
Q ss_pred ------------CCcc---cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005174 173 ------------GDNF---TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 173 ------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
++.. .+...+..+........+...+.... ....|+.. ...+...+...|++++|+..|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 01111111111111222222222222 11122211 1233556778899999999999884
Q ss_pred C--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc-eehHH------------HHHHHHHhcCChHHHHHHHHH
Q 005174 237 E--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN-VITWN------------TIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 237 ~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~------------~li~~~~~~g~~~~a~~~~~~ 300 (710)
+ | +...+..+...+.+.|++++|...|++..+...... ...|. .....+.+.|++++|+..|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 3 677889999999999999999999999877533221 11222 223467789999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----
Q 005174 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS----- 375 (710)
Q Consensus 301 m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 375 (710)
+.+... .+...+..+-..+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 377 Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 988642 234456667778889999999999999998865 344556677777774 467899999988765431
Q ss_pred -------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchH
Q 005174 376 -------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLL 448 (710)
Q Consensus 376 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 448 (710)
...+..+...+...|++++|+..|++.++.. +-+...+..+...+.+.|++++|...++.+++.. +.+..
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~ 530 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPE 530 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHH
Confidence 1234556777889999999999999998863 2245566777888999999999999999998864 45556
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCC----Ch---------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRR----DE---------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 515 (710)
.+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .+++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 6666666778899999999999988642 11 1223456778899999999999872 2445566
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQ 592 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~ 592 (710)
+..+...+.+.|++++|...|+.+.+. .|+ ...+..++.+|...|++++|++.++... ..| +...+..+..++.
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 777888899999999999999999864 676 8889999999999999999999999874 334 5667777888899
Q ss_pred hcCChHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 593 IHRNTGIGEWAAEKLLETRPENSG------YYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 593 ~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|+.++|...++.+++..|+++. .+..++.++.+.|++++|++.++...
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999998776543 56677999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-23 Score=242.84 Aligned_cols=594 Identities=11% Similarity=0.011 Sum_probs=440.3
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh---
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV--- 112 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 112 (710)
+.+.+....+.+...++.+.|.+.++++... .|+.. ..+..++..+...|+.++|.+.++.+.+.. +.+....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p-~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~ 102 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELI--DPNNP-DVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSR 102 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHcc--CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHH
Confidence 3445888888899999999999999999875 44332 378888888899999999999999999886 3333322
Q ss_pred -------------hHHHHHHHccCChhHHHHhHhhCCCCCCccHHH----HHHHHHhCCCchHHHHHHHHHHhCCCCCC-
Q 005174 113 -------------PKLVTFYASFSLYNNACFLVENSNIRYPLPWNL----LISLYVRDGFYAEALCVYKQMQSRRIRGD- 174 (710)
Q Consensus 113 -------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~A~~l~~~m~~~g~~p~- 174 (710)
..+...+.+.|++++|.+.|+.....++..... ........|+.++|+..|+++.+. .|+
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~ 180 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGN 180 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCC
Confidence 333457889999999999999876544333211 111222458999999999999885 344
Q ss_pred cccHHHHHHHHcccCCchHHHHHHHHHHhcCCCh--------------------HHHHHHHHHHHHhcCCHHHHHHHHhh
Q 005174 175 NFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWS--------------------LFVHNALVSMYGKFGQVDVARRLFDK 234 (710)
Q Consensus 175 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~--------------------~~~~~~li~~~~~~g~~~~A~~~~~~ 234 (710)
...+..+...+...|+.++|...++.+....+.+ ...+...+..+-.....+.|...++.
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4466677788888999999999998876211111 11122222222222334555555554
Q ss_pred cCC--CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-
Q 005174 235 MLE--RDAV-SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS- 310 (710)
Q Consensus 235 ~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 310 (710)
... .|.. ........+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.......
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 321 1111 11233556788999999999999998753 236788899999999999999999999999876433221
Q ss_pred hHH------------HHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 005174 311 VAT------------VIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KS 375 (710)
Q Consensus 311 ~t~------------~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 375 (710)
..+ ...-..+...|++++|...+..+++.. +.+...+..|...|...|++++|++.|++..+ .+
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 111 112335678899999999999999875 45566778899999999999999999998764 34
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVE--------PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (710)
...+..+...|. .++.++|+.+++.+...... .....+......+...|++++|.+.++..++.. +.+.
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~ 495 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSV 495 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 556777777664 46789999988775433110 011234455667788999999999999999975 5677
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------H
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV---------T 515 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t 515 (710)
.++..+...|.+.|++++|...|+++.+ | +...+..+...+...++.++|+..++++......++.. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 8888999999999999999999998753 3 55566666667788999999999998875433322221 1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 593 (710)
+..+...+...|+.++|..+++. ..++...+..+...|.+.|++++|++.|++.. ..| +...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23456678889999999998872 13346677889999999999999999999873 344 67889999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.|+.+.|...++.+.+..|+++..+..++.++.+.|++++|.++++.+.....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999999999999998876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-20 Score=208.75 Aligned_cols=570 Identities=10% Similarity=-0.029 Sum_probs=400.7
Q ss_pred HHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChh
Q 005174 47 FAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYN 126 (710)
Q Consensus 47 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 126 (710)
+...|++++|+..|++..+..+. . ...+..+..++...|+.++|....+..++.. +.|...+..+ .. .++++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~--n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~---i~~~~ 125 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD--N-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AA---IPVEV 125 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HH---hccCh
Confidence 33459999999999999876444 3 2388999999999999999999999998875 3334444444 22 28999
Q ss_pred HHHHhHhhCCCC---CCccHHHHHHH--------HHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHcccCCchHH
Q 005174 127 NACFLVENSNIR---YPLPWNLLISL--------YVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV-LKACGEMMDVDFG 194 (710)
Q Consensus 127 ~A~~~~~~~~~~---~~~~~~~li~~--------~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a 194 (710)
+|..+++++... +...+..+... |.+. ++|.+.++ .......|+..+.... .+.|...++++.+
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999997632 23344444444 5555 55555554 3333344455555555 8899999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHh-cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGK-FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVE- 272 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~- 272 (710)
..++..+....+.+......|..+|.. .++ +.+..+++...+.|...+..+...|.+.|+.++|.++++++...-..
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999999995555666667777778888 477 88988888766678899999999999999999999999998654222
Q ss_pred CceehHHHH------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 273 VNVITWNTI------------------------------AGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 273 p~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
|+..+|--+ +..+.+.++++.+.++.. +.|.......-..+...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccc
Confidence 333332222 344455555554444321 23333322222222223
Q ss_pred cCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCC---hH
Q 005174 323 VGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE-K-----SIITWNSMLSGYTHLDC---AE 393 (710)
Q Consensus 323 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 393 (710)
.+...++.+.+..+.+.. +.+....--+.....+.|+.++|.++|+.... + +...-+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 345555555555555542 23444444455556788999999999987655 2 22344466777777665 33
Q ss_pred HHHHH----------------------HHHHHHc-CCCC---cHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch
Q 005174 394 ESAFL----------------------FREMFRS-GVEP---NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 394 ~a~~~----------------------~~~m~~~-g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 447 (710)
++..+ +...... +..| +...+..+..++.. +..++|...+....... |+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---Cch
Confidence 34333 1111111 1223 44455555555554 78888999888887754 444
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhh
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH-VTMVAVLSACS 524 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 524 (710)
.....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. |+. ..+..+...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHH
Confidence 3344445555789999999999997764 345567777888999999999999999998854 443 33334444555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
..|++++|...+++..+ +.|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|+.+.|..
T Consensus 588 ~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 67999999999999985 5788888999999999999999999999987 3445 56778888889999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.++.+++++|+++..+..++.+|...|++++|+..+++..+..
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-20 Score=204.62 Aligned_cols=576 Identities=10% Similarity=-0.011 Sum_probs=415.3
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+...+..+...|...|++++|+..+++..+. .|+.. .+..++.. .++..++..+++.+++.. +.+..++..+
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~--~~~~~La~---i~~~~kA~~~ye~l~~~~-P~n~~~~~~l 148 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDA--RLERSLAA---IPVEVKSVTTVEELLAQQ-KACDAVPTLR 148 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH--HHHHHHHH---hccChhHHHHHHHHHHhC-CCChhHHHHH
Confidence 3677799999999999999999999999876 44443 34443422 278889999999999886 5667777777
Q ss_pred HHH--------HHccCChhHHHHhHhhCCCCC--CccHHHH-HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 005174 116 VTF--------YASFSLYNNACFLVENSNIRY--PLPWNLL-ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA 184 (710)
Q Consensus 116 ~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 184 (710)
... |.+.+....+++ .+...++ +...... ...|.+.|++++|+.+++++.+.+.. +..-...+-.+
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~a 225 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDV 225 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 776 888777777776 3333344 3333444 89999999999999999999997543 33335555566
Q ss_pred Hcc-cCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHH--------------
Q 005174 185 CGE-MMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-----RDAVSWN-------------- 244 (710)
Q Consensus 185 ~~~-~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-------------- 244 (710)
|.. .++ +.+..++. .....++.++..+...|.+.|+.++|..++++++. |+..+|-
T Consensus 226 y~q~l~~-~~a~al~~---~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 226 LLAGQLD-DRLLALQS---QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HHHhhCH-HHHHHHhc---hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 766 355 66666644 24447888999999999999999999999999832 2222221
Q ss_pred ----------------HHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHH--HHhcCChHHHHHHHHHHHhCCC
Q 005174 245 ----------------TMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG--CLRTGNFKGVLELLSRMRTQET 306 (710)
Q Consensus 245 ----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~ 306 (710)
.++..+.+.+.++-+.++. ...|.... ..+.. ....+...++...++.|.....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 1234455555555444331 13444332 22222 2233666777777777766521
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHHHHhh-c-CCCchhHHHHHHHHHHhcCCH---HHHHHH--------------
Q 005174 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRG-C-YGEYENVRNALITMYSRCKDL---RHAYIL-------------- 367 (710)
Q Consensus 307 ~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~---~~A~~~-------------- 367 (710)
. +.....-+--.....|+.++|.+++...... + -..+....+-|+..|.+.+.+ ..+..+
T Consensus 374 ~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 374 A-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred C-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 1 1111222222345678889999998887763 1 122445566778888877662 222222
Q ss_pred -----------HHhcCC---C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHH
Q 005174 368 -----------FKMTAE---K--SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK 431 (710)
Q Consensus 368 -----------~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 431 (710)
+..... . +...|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 111111 2 55677888877776 8899999988887765 477655444555667899999999
Q ss_pred HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCC
Q 005174 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLI---AGYGIQGEGRVALKLFEEMNKNQ 508 (710)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g 508 (710)
..+..+... +|+...+..+...+.+.|++++|...|+...+.++..++... ..+...|++++|+..|++..+
T Consensus 530 ~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-- 604 (987)
T PRK09782 530 AAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-- 604 (987)
T ss_pred HHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 999987654 344455677788899999999999999988765444333333 333445999999999999987
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWA 585 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 585 (710)
..|+...+..+..++.+.|++++|...+++... +.|+ ...++.+..++...|+.++|++.+++. ...| +...+.
T Consensus 605 l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~ 681 (987)
T PRK09782 605 IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR 681 (987)
T ss_pred hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 467888899999999999999999999999986 4787 788899999999999999999999987 3344 678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.+..++...|+++.|+..++++++++|+++......+++..+..+++.|.+-+++--...+
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999999997776654443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-20 Score=185.03 Aligned_cols=443 Identities=13% Similarity=0.085 Sum_probs=323.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
-..|..-..+.|++++|.+.....-..+ ..+..+...+-..+.+..+.+.....-.......+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445566667788888877655443321 112222222223344444443322222222233334456777777777777
Q ss_pred CCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHH-HHHHhcCChHHHHHHH
Q 005174 223 GQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIA-GGCLRTGNFKGVLELL 298 (710)
Q Consensus 223 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~ 298 (710)
|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|+..+|...|
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888887777442 455777777777778888888777777765 455544333222 2233345666666555
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh--
Q 005174 299 SRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI-- 376 (710)
Q Consensus 299 ~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 376 (710)
.+..+.. | .-..+|+.|...+-..|++-.|+..|++...-|+
T Consensus 208 lkAi~~q--p----------------------------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 208 LKAIETQ--P----------------------------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHHHhhC--C----------------------------------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc
Confidence 5554321 1 1123456677777777888888888877665433
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHh
Q 005174 377 -ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454 (710)
Q Consensus 377 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 454 (710)
..|-.|...|...+.+++|+..|.+.... +|+ ...+..+...|...|.++.|+..+++.+... +.-...|+.|.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~Nla 327 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLA 327 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHH
Confidence 46777888888888899998888877664 555 4566677777888899999999999988864 44467899999
Q ss_pred hhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVV 530 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 530 (710)
.++-..|++.+|.+.+.+... + ...+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-..|+++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999998764 3 566889999999999999999999999887 5676 457888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 531 EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
+|...+++.. .|+|+ ...|+.+...|-..|+.+.|++.+.+. .+.|. ....+.|...|...|+..+|+..++.+
T Consensus 406 ~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 406 DAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 9999999987 48999 889999999999999999999999887 35664 567889999999999999999999999
Q ss_pred HhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 608 LETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 608 ~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
++++||.+..|..+..++---..|.+
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999988877777766
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=176.50 Aligned_cols=358 Identities=13% Similarity=0.129 Sum_probs=277.9
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchh-HHHHHHH
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD-SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYEN-VRNALIT 353 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~-~~~~li~ 353 (710)
.+|..+...+-..|++++|+.+++.+.+. +|+ ...|..+..++...|+.+.+.+.+...++.. |+.. +.+.+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 34444444444444444444444444432 121 2233334444444444444444444444322 2221 2234445
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY-VTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 429 (710)
..-..|++++|...+.+..+- -.+.|+.|...+-..|+...|+..|++.... .|+. ..|..+-..|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 555678899988888765543 2378999999999999999999999998865 4553 578888888888999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
|...+.+..... +....++..+...|-..|.++.|...+++..+. =...|+.|..++-..|++.+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 999988888764 666888999999999999999999999998753 356899999999999999999999999987
Q ss_pred CCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH
Q 005174 507 NQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SA 582 (710)
Q Consensus 507 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~ 582 (710)
+.|+ ....+.|...+...|.+++|..+|....+ +.|. ....+.|...|-.+|++++|+..+++. .++|+ ..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 4555 55788899999999999999999999875 6888 778999999999999999999999987 57776 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.++.+...|...|+...|.+.+.+++.++|.-++.+..|+.+|..+|+..+|+.-++.......
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 8899999999999999999999999999999999999999999999999999999888765443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-17 Score=169.52 Aligned_cols=577 Identities=13% Similarity=0.056 Sum_probs=412.4
Q ss_pred chHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcc--cCchHhHHHHHHHHHHhC--CCCCCchhhHHHHHHHccCChhHH
Q 005174 53 LSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGK--VKALAQGKQLHACAIALG--LEKNPVLVPKLVTFYASFSLYNNA 128 (710)
Q Consensus 53 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 128 (710)
.+.|...|...... .|+. ....+.+||.. .+++..+..+|..++..+ ..+|+.+ .+...+.++|+.+.|
T Consensus 146 ~~~A~a~F~~Vl~~--sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a 218 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKA 218 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhH
Confidence 58899999888764 4444 56667777654 468999999999877665 3455543 344667899999999
Q ss_pred HHhHhhCCCCCCccHHHHHHHHH---h---CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH
Q 005174 129 CFLVENSNIRYPLPWNLLISLYV---R---DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202 (710)
Q Consensus 129 ~~~~~~~~~~~~~~~~~li~~~~---~---~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (710)
...|....+-|+..-++++.... . ...+..++.++...-... .-++...+.|-+-+...|++..+..+...+.
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99999887777755555543222 1 223455666666554321 2356677788888889999999999888887
Q ss_pred -hcC--CChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--C--hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCce
Q 005174 203 -ACH--EWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--D--AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275 (710)
Q Consensus 203 -~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 275 (710)
... ..-...|-.+..+|...|++++|...|-+..+. | +..+--+...|.+.|+.+.+...|+..... .+-+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchH
Confidence 222 122345777889999999999999999887543 2 334556778899999999999999998775 33345
Q ss_pred ehHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHH----HHHhhcCCCchhH
Q 005174 276 ITWNTIAGGCLRTG----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHG----SAVRGCYGEYENV 347 (710)
Q Consensus 276 ~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~----~~~~~~~~~~~~~ 347 (710)
.+..+|...|...+ ..+.|..++.+..+.- ..|...|..+-..+- .++.......+. .+...+..+.+.+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 66666666676664 4566777776666543 223444444433333 333333344443 4445666788889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEK-------SI------ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT- 413 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t- 413 (710)
.|.+...+...|.+++|...|++.... |. .+--.+...+-..++.+.|.+.|+..... .|.-++
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 999999999999999999999865432 22 12233455666778999999999999887 455443
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHH
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGY 488 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~ 488 (710)
|..+.......+...+|...+..+.... ..++.+++.+.+.|.+...+..|.+-|..+.+ +|+.+.-+|.+.|
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~ 610 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVY 610 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHH
Confidence 3333323334567888999999888875 66777788888899999999999886666543 2555555555544
Q ss_pred Hh------------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 489 GI------------QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 489 ~~------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
.+ .+..++|+++|.+.+... +-|...-+.+.-.++..|++.+|..+|...++. ..-...+|-.+.
T Consensus 611 ~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNla 687 (1018)
T KOG2002|consen 611 IQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLA 687 (1018)
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHH
Confidence 32 345788999999998753 336677778888889999999999999999986 333456788999
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh-----
Q 005174 557 DLYGRAGLLNKAKEIITKMP----YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA----- 627 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----- 627 (710)
.+|..+|++-.|+++|+..- ...+..+...|..++...|.+.++.+++..+..+.|.++..-..++-+..+
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 99999999999999998762 345788899999999999999999999999999999998777766665443
Q ss_pred --------------cCCchHHHHHHHHHHhCCCc
Q 005174 628 --------------TGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 628 --------------~g~~~~A~~~~~~m~~~~~~ 647 (710)
.+.+++|.+++..|...+-+
T Consensus 768 lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 768 LRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667788888888765543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-17 Score=179.89 Aligned_cols=417 Identities=14% Similarity=0.057 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-ceehHHHHHHHHHhc
Q 005174 212 HNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV-NVITWNTIAGGCLRT 288 (710)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 288 (710)
+......|.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.+....+. .| +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 3455666777888888888888763 356677777888888888888888888887764 33 345677778888888
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005174 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368 (710)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 368 (710)
|++++|+.-|......+...+.. ...++..... ..+........+.. +.+...+..+.. |........+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 88888887776654432111111 1111111111 11111112222211 111111122211 21111111111111
Q ss_pred HhcCCCCh---hHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005174 369 KMTAEKSI---ITWNSMLSG---YTHLDCAEESAFLFREMFRSG-VEPN-YVTIASILPLCARVANLQHGKEFHCYILRR 440 (710)
Q Consensus 369 ~~~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (710)
....+.+. ..+..+... ....+++++|+..|++....+ ..|+ ...+..+...+...|++++|...+...++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 11111111 111111111 123467899999999998765 2343 345666666778899999999999999886
Q ss_pred CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHH
Q 005174 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTM 516 (710)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 516 (710)
. +.....|..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 4 45567888889999999999999999998764 36778999999999999999999999999885 454 5567
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHH
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTS-------A-MWAT 586 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ 586 (710)
..+...+.+.|++++|...|+..... .|+ ...++.+..+|...|++++|++.|++. ...|+. . .++.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788889999999999999998864 566 788999999999999999999999886 233321 1 1122
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+..+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.++...+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223344699999999999999999999999999999999999999999999887653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-18 Score=177.45 Aligned_cols=291 Identities=12% Similarity=0.041 Sum_probs=141.3
Q ss_pred HhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc---eehHHHHHHHHHhcCChHH
Q 005174 220 GKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN---VITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 293 (710)
...|++++|...|+++.+ | +..+|..+...+.+.|++++|..+++.+...+..++ ...+..+...|.+.|++++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555555555532 1 233455555555555555555555555544321111 1234445555555555555
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY----ENVRNALITMYSRCKDLRHAYILFK 369 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 369 (710)
|..+|+++.+.. ..+..++..+...+...|++++|...+..+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 12233344444444444444444444444433322111 1123345555666666666666666
Q ss_pred hcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc
Q 005174 370 MTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH 446 (710)
Q Consensus 370 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 446 (710)
++.+ .+...+..+...|.+.|++++|.++|+++...+......++..+..++...|++++|...+..+.+.. |+
T Consensus 205 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~ 281 (389)
T PRK11788 205 KALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---PG 281 (389)
T ss_pred HHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Confidence 5543 23345556666666666666666666666654322222344455555555555555555555555432 23
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcC--CCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMS--RRDEVTYTSLIAGYGI---QGEGRVALKLFEEMNKNQIKPDHV 514 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 514 (710)
...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. .|+.++++.+|++|.+.+++|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3333455555555555555555555443 2344445444444432 334555555555555544444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-18 Score=175.11 Aligned_cols=291 Identities=10% Similarity=0.072 Sum_probs=219.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhccCch
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN---YVTIASILPLCARVANL 427 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 427 (710)
.+...|++++|...|+++.+. +..+|..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 455667777777777776542 345677777777888888888888887776542222 23456667777778888
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC--------hhHHHHHHHHHHhcCChHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD--------EVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+...|++++|..
T Consensus 124 ~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 88888888877653 4566778888888888888888888888776431 1235567778888999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...++.++.+|.+.|++++|.+.++++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988743 223556777778888999999999999998764 454 4567888999999999999999998873
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCC
Q 005174 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA---TGCWDKLAKVRTCMRDLGVRKIPG 651 (710)
Q Consensus 577 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 651 (710)
..|+...+..++..+...|+.+.|...++.+++..|++. .+..+...+.. .|+.+++..+++.|...+++..|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 457766778888889999999999999999999999876 44445555443 568999999999999888877776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-16 Score=160.48 Aligned_cols=477 Identities=16% Similarity=0.182 Sum_probs=309.3
Q ss_pred hHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCC------CccHHHHHHHHHhCCCchHHHHHH
Q 005174 90 LAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY------PLPWNLLISLYVRDGFYAEALCVY 163 (710)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~l~ 163 (710)
+..+.+++......+ +.++.+.+.|.+.|.-.|+++.++.+...+.... ..+|-.+.++|...|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 333444444443333 5566677777777777777777777666544222 234666777777777777777777
Q ss_pred HHHHhCCCCCCccc--HHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC----CHHHHHHHHhhcCC
Q 005174 164 KQMQSRRIRGDNFT--YPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFG----QVDVARRLFDKMLE 237 (710)
Q Consensus 164 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~ 237 (710)
.+-.+ ..||.++ +--|.+.+...|+++.+...|+.+..-.+.+..+...|...|+..+ ..+.|..++.+..+
T Consensus 331 ~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 331 MESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 66554 3444433 3345566777777777777777777666666666666666666664 45566666666644
Q ss_pred C---ChhHHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC
Q 005174 238 R---DAVSWNTMISAYASKGLWKEAFQLFVEM----QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ---ETY 307 (710)
Q Consensus 238 ~---~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~ 307 (710)
+ |...|-.+...+-+..-+ .++..|... ...+-.+.....|.+...+...|++.+|...|.+.... -..
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 3 455565555555444333 336555443 34444466677888888888888888888888887655 222
Q ss_pred CCh-----h-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 005174 308 LDS-----V-ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIIT 378 (710)
Q Consensus 308 p~~-----~-t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 378 (710)
+|. . +--.+-...-..++.+.|.+++..+++.. +.....|--|..+....+...+|...++.... .|+..
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 332 1 12222333445567888888888887754 11122222222222223566777777776543 46677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhc------------cCchHHHHHHHHHHHHhCCCCC
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSG-VEPNYVTIASILPLCAR------------VANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
|+.+...+.....+..|..-|......- ..+|......|-+.|.. .+..++|.++|.++++.. +.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pk 644 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PK 644 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cc
Confidence 8777778888888888888666655432 23677776666665532 234678888888888875 77
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~ 521 (710)
|...-|-+.-.++.+|++.+|..+|..+.+. +..+|-.+.++|...|++..|+++|+...+. .-+-+......|..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 8888888888999999999999999888753 5578888999999999999999999886553 43445667788888
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHH------------------HHHhcCCHHHHHHHHHhCC
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVD------------------LYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~------------------~~~~~g~~~~A~~~~~~m~ 576 (710)
++...|.+.+|.+........ .|. ...+|..+- .....+..+.|.++|..+.
T Consensus 725 a~y~~~~~~eak~~ll~a~~~---~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHL---APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHh---CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998888877754 443 233332221 1222345677888888773
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-15 Score=170.35 Aligned_cols=185 Identities=9% Similarity=0.002 Sum_probs=110.7
Q ss_pred hcCChhHHHHHHhhcCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHhhccCcHHH
Q 005174 459 RSGKVPEAKSVFDLMSRRD---EV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHVTMVAVLSACSHSGLVVE 531 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~ 531 (710)
..|++++|...|+.+.+.+ +. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 4455566666665555321 11 11113445666666666666666655432110 01234444445566666666
Q ss_pred HHHHHHHHHHHhC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 005174 532 GQKQFERMTSIYG----------IFPQ---LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRN 596 (710)
Q Consensus 532 a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~ 596 (710)
|.++++.+..... -.|+ ...+..+...+...|++++|++.++++. .+.+...+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 6666666654210 0122 2234556667777777777777777762 22355667777777777777
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.|+..++++++++|++...+..++..+.+.|+|++|+++++.+..
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777776654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-16 Score=170.32 Aligned_cols=350 Identities=13% Similarity=0.021 Sum_probs=225.0
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHH
Q 005174 220 GKFGQVDVARRLFDKMLER------DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 293 (710)
.+..+++.-.-.|..-++. +....-.++..+.+.|++++|+.+++........ +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3456666666666655442 2223344566677778888888888777665333 33445555566666777777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (710)
|+..|+++.... | .+...+..+...+...|++++|...|++...
T Consensus 95 A~~~l~~~l~~~--P----------------------------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 95 VLQVVNKLLAVN--V----------------------------------CQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred HHHHHHHHHHhC--C----------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776542 2 2233344555556666666666666665443
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 374 ---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 374 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
.+...|..+...+...|++++|...++.+......+ ...+.. +..+...|++++|...+..+++.. ..++....
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~ 215 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFF-ALERQESA 215 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCcchhHH
Confidence 244566666666777777777777776665543222 112222 223556677777777776666553 22333344
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRV----ALKLFEEMNKNQIKPD-HVTMVAVLSA 522 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a 522 (710)
..+...+.+.|++++|...|++..+. +...+..+...|...|++++ |+..|++..+. .|+ ...+..+...
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 293 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 44556677777777777777766532 45567777777788888775 78888888764 444 5577777778
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWA-TLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~-~l~~~~~~~g~~~~ 599 (710)
+...|++++|...+++... ..|+ ...+..+..+|.+.|++++|++.++++. ..|+...+. .+..++...|+.+.
T Consensus 294 l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888775 3566 5667778888888888888888888773 455544433 34566778888888
Q ss_pred HHHHHHHHHhhCCCC
Q 005174 600 GEWAAEKLLETRPEN 614 (710)
Q Consensus 600 a~~~~~~~~~~~p~~ 614 (710)
|...++.+++..|++
T Consensus 371 A~~~l~~al~~~P~~ 385 (656)
T PRK15174 371 AESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHhChhh
Confidence 888888888888875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-15 Score=139.76 Aligned_cols=337 Identities=14% Similarity=0.124 Sum_probs=232.6
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHH--HhcccCchHhH-HHHHHHHHHhCCCCCCch
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIF--CCGKVKALAQG-KQLHACAIALGLEKNPVL 111 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~ 111 (710)
..+.+=|.++.. ...|.+.++.-+|+.|+..|+...+. .-..|++ +|....++.-+ .+.|-.+.+.| ..+..+
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~k--vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~s 189 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEK--VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSS 189 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHH--HHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccc
Confidence 334455555543 56789999999999999998776654 3333332 23333333222 22233333333 222233
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
| +.|.+.+ ++-+...+...+|..||.++++.-..++|.++|++-.....+.+..+||.+|.+..-..
T Consensus 190 W--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-- 256 (625)
T KOG4422|consen 190 W--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-- 256 (625)
T ss_pred c--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc--
Confidence 3 4455443 55556667788999999999999999999999999998888999999999998754332
Q ss_pred hHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005174 192 DFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270 (710)
Q Consensus 192 ~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 270 (710)
++.+...|. ....||..++|+++...++.|+++.|. ..|++++.+|++-|
T Consensus 257 --~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiG 307 (625)
T KOG4422|consen 257 --GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIG 307 (625)
T ss_pred --cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhC
Confidence 366666666 777777777777777777777776665 34678889999999
Q ss_pred CCCceehHHHHHHHHHhcCChHH-HHHHHHHHHh----CCCC---C-ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 005174 271 VEVNVITWNTIAGGCLRTGNFKG-VLELLSRMRT----QETY---L-DSVATVIGLGACSHVGALKLGKEIHGSAVRGCY 341 (710)
Q Consensus 271 ~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~---p-~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~ 341 (710)
+.|...+|..+|..+++.++..+ +..++.++.. +..+ | |...|...+..|.+..+.+.|.+++.......-
T Consensus 308 VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N 387 (625)
T KOG4422|consen 308 VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN 387 (625)
T ss_pred CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc
Confidence 99999999999999999988754 5555555543 2233 3 345578889999999999999988876654320
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
+...|.. ++ ...-|..+....|+....+.-...|..|+-.-+-|+..+...++++.
T Consensus 388 -------------~~~ig~~------~~-----~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 388 -------------WKFIGPD------QH-----RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred -------------hhhcChH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 0000100 00 11234456666777778888888899998887888888888888888
Q ss_pred hccCchHHHHHHHHHHHHhC
Q 005174 422 ARVANLQHGKEFHCYILRRA 441 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~ 441 (710)
...+.++-..++|..++.-|
T Consensus 444 ~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hhcCcchhHHHHHHHHHHhh
Confidence 88888888888887777665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-15 Score=166.34 Aligned_cols=418 Identities=11% Similarity=-0.039 Sum_probs=220.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+.....-.+.+...+..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 44566778888999999999988776 4567777777777777778888777777777644455666777777778888
Q ss_pred CCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 223 GQVDVARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 223 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
|++++|..-|...... +......++..+.. ..+........+. -+++..++..+.. +...........-+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 8888877766544211 11111111111111 1122222222221 1122222322222 211111111111111
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH---HHhcCCHHHHHHHHHhcCCC--
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM---YSRCKDLRHAYILFKMTAEK-- 374 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~-- 374 (710)
+-.+ ..+.... .+..+... ....+++++|.+.|+...+.
T Consensus 282 ~~~~--~~~~~~~----------------------------------~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 282 DSNE--LDEETGN----------------------------------GQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred cccc--ccccccc----------------------------------chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 1000 0000000 00000000 01224455555555443321
Q ss_pred ----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHH
Q 005174 375 ----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLL 449 (710)
Q Consensus 375 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 449 (710)
+...|+.+...+...|++++|+..|++.++. .|+ ...|..+...+...|++++|...+..+++.. +.+..+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~ 401 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDI 401 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 2234555555555566666666666655543 233 3344455555555666666666666655543 444556
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 525 (710)
+..+...|...|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .| +...+..+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 666666666666666666666665432 3445556666666677777777777766653 23 34556666666666
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC--h------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ--L------EHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
.|++++|...|+..... .|+ . ..++.....+...|++++|.+++++. ...| +...+..+...+...|
T Consensus 480 ~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred ccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 77777777777666542 332 0 11222222333457777777777664 3334 3345666667777777
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 005174 596 NTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~ 613 (710)
+++.|...++++.++.+.
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 777777777777776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-14 Score=156.11 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=131.6
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAG 487 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~ 487 (710)
.+-++...++..++.+.++.+...+ .+....+-.++.++|...+++++|..+|..+... +......|.-+
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~-~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEG-YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 3446677778888888888888777 5545567777888888888888888888876432 12224567777
Q ss_pred HHhcCChHHHHHHHHHHHHCCC-----------CCC--hH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQI-----------KPD--HV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHF 552 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 552 (710)
|...+++++|..+++++.+... .|| -. .+..+...+...|++.+|++.++++... .|. ....
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~ 453 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLR 453 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHH
Confidence 7788888888888888776211 122 11 2334455566777777777777777643 454 6677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
..+.+.+...|++.+|++.++... ..| +..+......++...+++..|+...+.+.+..|+++.
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 777777777777777777776652 344 3445555666666677777777777777777777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=158.17 Aligned_cols=348 Identities=11% Similarity=-0.021 Sum_probs=234.1
Q ss_pred ccCChhHHHHhHhhCCCC------CCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHH
Q 005174 121 SFSLYNNACFLVENSNIR------YPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFG 194 (710)
Q Consensus 121 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 194 (710)
+..+++.-.-.|...++. +..-..-++..+.+.|+++.|+.+++........ +...+..+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 444555555555443321 1122445667778888888888888887765333 233444555566678888888
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
...++.+..-.+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...++.+.....
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 8888888755666677788888888888888888888888743 3 566778888888888888888888887766433
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHH
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 351 (710)
.+ ...+..+ ..+.+.|++++|+..++.+......++......+..++...|+.++|...+...++.. +.+..++..+
T Consensus 176 ~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 176 PR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 22 2233233 3477788888888888887766433444444445566677788888888887777654 4456667777
Q ss_pred HHHHHhcCCHHH----HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 005174 352 ITMYSRCKDLRH----AYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARV 424 (710)
Q Consensus 352 i~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 424 (710)
...|...|++++ |...|++... .+...+..+...+.+.|++++|+..+++..... +.+......+..++...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788888888775 6777776543 245677777778888888888888888777653 22334455556677777
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR 475 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 475 (710)
|++++|...+..+.+.. +.+...+..+..++...|+.++|...|++..+
T Consensus 332 G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 332 GQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78888877777777654 22233344455667777778888777777653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-14 Score=150.15 Aligned_cols=552 Identities=13% Similarity=0.017 Sum_probs=332.8
Q ss_pred HHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC
Q 005174 58 EAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI 137 (710)
Q Consensus 58 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 137 (710)
.++-.+...|+.|+.. ||.++|..|+..|+.+.|. ++..|.-..++.+..+++.++....+.++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRv--tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRV--TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchh--hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 3567788889999998 9999999999999999888 9999988888888899999999888888887765 6
Q ss_pred CCCccHHHHHHHHHhCCCchHHHHHHHH-HH-------hCCCCCCcccHHHHHHHHc--------------ccCCchHHH
Q 005174 138 RYPLPWNLLISLYVRDGFYAEALCVYKQ-MQ-------SRRIRGDNFTYPSVLKACG--------------EMMDVDFGR 195 (710)
Q Consensus 138 ~~~~~~~~li~~~~~~~~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~--------------~~~~~~~a~ 195 (710)
|.+.+|+.|..+|.+.|+... ++..++ |. ..|+.--..-+-..+.+|. ..|.++.+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 777889999999999998765 333222 22 1222211111211112211 112222222
Q ss_pred HHHHHHH--hcCCChHHHHHHHHHHH-HhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 005174 196 VVHSCID--ACHEWSLFVHNALVSMY-GKFGQVDVARRLFDKMLE-RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 196 ~~~~~~~--~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 271 (710)
++...+. .-..|..+ .++-. .....+++-........+ ++..+|.+++.+-.-+|+++.|..++.+|++.|+
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 2222221 00111111 11111 112234444444444444 7899999999999999999999999999999999
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHH-----------HHHHHh--
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEI-----------HGSAVR-- 338 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i-----------~~~~~~-- 338 (710)
+.+.+-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+..+...|....+... ...+.+
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 9998888877766 888999999999999999999999998888777775433222111 111111
Q ss_pred -----------------------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh
Q 005174 339 -----------------------GCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK-------SIITWNSMLSGYTH 388 (710)
Q Consensus 339 -----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 388 (710)
.|+.....+|...+. ....|+-++..++-..+..+ ++..|..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 112222222222111 11235545555554444322 34444444443332
Q ss_pred cC----------------------ChHHHHHHHHHHHHcCCCCcHH----------------------------HHHHHH
Q 005174 389 LD----------------------CAEESAFLFREMFRSGVEPNYV----------------------------TIASIL 418 (710)
Q Consensus 389 ~g----------------------~~~~a~~~~~~m~~~g~~p~~~----------------------------t~~~ll 418 (710)
.- +..+..++.... .||.. .-..++
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 21 111111111111 22211 122334
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC------hhHHHHHHHHHHhcC
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD------EVTYTSLIAGYGIQG 492 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g 492 (710)
..|++.-+..++...-+.....- ++ ..|..||+.+....+++.|..+.+++..++ ..-+..+.+.+.+.+
T Consensus 467 l~l~se~n~lK~l~~~ekye~~l-f~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLL-FA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 44444444444443222222211 21 468999999999999999999999998774 446788899999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQI-KPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 570 (710)
...++..++++|.+.-. .|+ ..++-.++......|..+.-.++++-+... |+.-+ .-++....+.++...|.+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeeccchhhhhh
Confidence 99999999999987422 222 456667777888888888888888877654 55442 334455566777777766
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHH---------------------hcCChHHHHHHHHHH-Hhh-CCC------------
Q 005174 571 IITKM--PYTPTSAMWATLLGACQ---------------------IHRNTGIGEWAAEKL-LET-RPE------------ 613 (710)
Q Consensus 571 ~~~~m--~~~p~~~~~~~l~~~~~---------------------~~g~~~~a~~~~~~~-~~~-~p~------------ 613 (710)
+++.. ..+|.+.....+.+.+. +.|++..+....+.- ... .|.
T Consensus 618 a~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 618 APEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred cchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccH
Confidence 66544 12333333333333322 222222221111100 000 000
Q ss_pred --------CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 614 --------NSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 614 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+....|...|.+.|+|+.|..+|.+|.
T Consensus 698 Ell~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 698 ELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred HHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 13456668889999999999999999987
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-12 Score=135.81 Aligned_cols=467 Identities=15% Similarity=0.074 Sum_probs=316.8
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC-CCCCCchh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKNPVLV 112 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 112 (710)
+|..+.+.....-+...|++++|.+++.+.....+.... .|..|...|-..|+.+++...+ ++... .+.|...|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W 210 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---AYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELW 210 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---hHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHH
Confidence 344555555555556669999999999999887655444 8999999999999998776643 33333 36677899
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHH---HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH----HHHHH
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLL---ISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS----VLKAC 185 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~ 185 (710)
..+.....+.|.++.|+-.|.+..+.++.-|-.+ +..|-+.|+...|.+-|.++.....+.|-.-+.. +++.+
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876666555554 5788899999999999999987633222222333 34445
Q ss_pred cccCCchHHHHHHHHHH--hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh-------------------
Q 005174 186 GEMMDVDFGRVVHSCID--ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE----RDA------------------- 240 (710)
Q Consensus 186 ~~~~~~~~a~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~------------------- 240 (710)
...++.+.|...+.... .+-..+...++.++..|.+...++.|......+.. +|.
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 55666677766666655 45566777889999999999999999887766632 111
Q ss_pred ---hHHH----HHHHHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 005174 241 ---VSWN----TMISAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV 311 (710)
Q Consensus 241 ---~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 311 (710)
.+|+ -+.-++......+....+.....+.. +.-+...|.-+..++.+.|++.+|+.+|..+......-+..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 1122 12233444444444444555555555 33456678889999999999999999999999887777788
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------------hHH
Q 005174 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSI------------ITW 379 (710)
Q Consensus 312 t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~ 379 (710)
.|..+...+...|..++|.+.+..++... +.+..+.-.|-..|.+.|+.++|.+.+..+..+|. ..-
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 88888999999999999999999998865 44556667888899999999999999999876652 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----------------------CCCcHHHHHHHHHHHhccCchHHHHHH----
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSG----------------------VEPNYVTIASILPLCARVANLQHGKEF---- 433 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------~~p~~~t~~~ll~~~~~~~~~~~a~~~---- 433 (710)
-.....+.+.|+.++=+.+-..|+..+ ..-...+...++.+-.+.++......-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 223445667777776555555554321 111122222233333333321111111
Q ss_pred --HHHHHHhCCCCCc--hHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----Chh----HHHHHHHHHHhcCChHHHHHH
Q 005174 434 --HCYILRRAMFNEH--LLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----DEV----TYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 434 --~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~li~~~~~~g~~~~A~~~ 500 (710)
.......+ ...+ -..+..++..+++.+++++|+.+...+..- +.. .=..++.+....+++..|...
T Consensus 610 ~~~~~~e~~~-Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 610 TEFRAVELRG-LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111111 1111 235667778888889999998888877643 111 234456677778888888888
Q ss_pred HHHHHHC
Q 005174 501 FEEMNKN 507 (710)
Q Consensus 501 ~~~m~~~ 507 (710)
++.|...
T Consensus 689 lR~~i~~ 695 (895)
T KOG2076|consen 689 LRSVITQ 695 (895)
T ss_pred HHHHHHH
Confidence 8888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-14 Score=157.67 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=145.2
Q ss_pred HHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCCh
Q 005174 46 DFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY 125 (710)
Q Consensus 46 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 125 (710)
.....|+.++|+++|.........+. ..+..+..++...|++++|..+++.+++.. +.+...+..+..++.+.|++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~~~~a---~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHMQLPA---RGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 33456777777776666654221111 145666666666666666666666666553 33444555555556666666
Q ss_pred hHHHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH
Q 005174 126 NNACFLVENSN---IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID 202 (710)
Q Consensus 126 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 202 (710)
++|...+++.. ..+.. |..+...+...|++++|+..+++..+.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------------------------------- 145 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------------------------------- 145 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---------------------------------
Confidence 66666555542 12223 555555555556666666666555542
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------HHHHHHHHHH-----hCCCh---HHHHHHHHHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV--------SWNTMISAYA-----SKGLW---KEAFQLFVEM 266 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m 266 (710)
.+.+...+..+..++...|..+.|...++.... +.. ....++.... ..+++ ++|++.++.+
T Consensus 146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 233444444455556666777777777766654 211 1111222111 11223 5666666666
Q ss_pred HHc-CCCCceeh-HH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 005174 267 QEE-GVEVNVIT-WN----TIAGGCLRTGNFKGVLELLSRMRTQETY-LDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339 (710)
Q Consensus 267 ~~~-g~~p~~~~-~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~ 339 (710)
.+. ...|+... +. ..+..+...|++++|+..|+.+.+.+.. |+..
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a---------------------------- 274 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA---------------------------- 274 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH----------------------------
Confidence 543 12222211 11 1123344556666777776666655421 2211
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 340 CYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS-------IITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 340 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
...+...|...|++++|...|+++.+.+ ...+..+..++...|++++|..+++.+...
T Consensus 275 --------~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 275 --------QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred --------HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 1113345555556666666555543321 123444555666777777777777776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-11 Score=124.04 Aligned_cols=462 Identities=13% Similarity=0.111 Sum_probs=304.6
Q ss_pred HHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHH
Q 005174 183 KACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEA 259 (710)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 259 (710)
++.....+.+.|+.++......++.+...|.+| ++..-++.|..+++...+ .+...|-+-...=-.+|+.+..
T Consensus 384 KaAVelE~~~darilL~rAveccp~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECCPQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhccchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 333444555556666666665555555555443 344556666666655533 3555665555555556666666
Q ss_pred HHHHHH----HHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhHHHHHHHHhhccCChHHHHHHH
Q 005174 260 FQLFVE----MQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLD--SVATVIGLGACSHVGALKLGKEIH 333 (710)
Q Consensus 260 ~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~t~~~~l~~~~~~~~~~~a~~i~ 333 (710)
.+++.+ +...|+..+...|-.=...|-..|..-.+..+.......|+.-. ..|+...-..|.+.+.++.++.++
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 666543 23445555555555544555555555555555554444443322 233444444444444444444444
Q ss_pred ----------------------------------HHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh
Q 005174 334 ----------------------------------GSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSI 376 (710)
Q Consensus 334 ----------------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 376 (710)
..++... +-....|-....-+-..|++..|+.++.+.-+ .+.
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 4444332 22223344444445556777777777665543 244
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
..|-+-+.....+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.++++..++. ++.-...|-.+.+.
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHH
Confidence 56777777777788888888888777654 567767766666666677888888888887776 46666777778888
Q ss_pred hhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
+-..++++.|.+.|..=.+ | .+..|-.+...--+.|+.-+|..+|++.+-.+ +-|...|...|..-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHH
Confidence 8888888888887775543 2 45567777777777788888888888877654 225667888888888888888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+..+..+. ...+...|..-|.+..+.++--+....+++.. -|..+.-+....+.....++.|...++++...+|+
T Consensus 774 ~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 774 LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 888887775 33336677778888888777777777777765 35556666677788888999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCe
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 660 (710)
+..+|..+-.-+.+.|.-++-.+++++.... .+.+|..|.-+...
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKD 894 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhh
Confidence 9999999999999999999999998888753 34678888755443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-13 Score=144.75 Aligned_cols=425 Identities=12% Similarity=0.004 Sum_probs=261.9
Q ss_pred HccCChhHHHHhHhhCCCCCCcc---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH---HHHHcccCCchH
Q 005174 120 ASFSLYNNACFLVENSNIRYPLP---WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV---LKACGEMMDVDF 193 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~ 193 (710)
.+.|++..|+..|++..+.++.+ ...++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44555555555555544322221 2244445555555555555555544 2222222211 223444455555
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--CCChHHHHHHHHHHHHcCC
Q 005174 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYAS--KGLWKEAFQLFVEMQEEGV 271 (710)
Q Consensus 194 a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~ 271 (710)
|..+++.+....+.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 55555555533444555566777778888888899888888865433322223334443 555656888898888753
Q ss_pred CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHH
Q 005174 272 EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNAL 351 (710)
Q Consensus 272 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 351 (710)
+-+...+..+..++.+.|-...|+++..+-. +-++-..... + -.......++.+..++..- .
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~-------l--~~~~~a~~vr~a~~~~~~~-~-- 261 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQ-------L--ERDAAAEQVRMAVLPTRSE-T-- 261 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHH-------H--HHHHHHHHHhhcccccccc-h--
Confidence 2245666777788888888888887766532 2111100000 0 0000011111111110000 0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE-----KSI-----ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~-----~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
.+.--.+.|..-++.+.. |.. ...--.+.++...|++.++++.|+.|...|.+....+-..+.++|
T Consensus 262 ----~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 262 ----ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ----hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 000012223322222221 111 112234667888889999999999999888765566788888999
Q ss_pred hccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh------------------h
Q 005174 422 ARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE------------------V 479 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~ 479 (710)
...+.+++|..++..+....+ .+++......|.-+|...+++++|..+++.+.+..+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 999999999999998876541 133444467888889999999999999998875211 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++... .+.|+ .......+..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHH
Confidence 34456778889999999999999998752 4467778888888999999999999997765 35887 7778888999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 005174 559 YGRAGLLNKAKEIITKM 575 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m 575 (710)
+...|++++|..+.+..
T Consensus 494 al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 494 AMALQEWHQMELLTDDV 510 (822)
T ss_pred HHhhhhHHHHHHHHHHH
Confidence 99999999998888766
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-11 Score=122.19 Aligned_cols=541 Identities=14% Similarity=0.094 Sum_probs=407.5
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~l 162 (710)
..+++..|+-++..+.+.+ +.++..|-+-...=-..|++..|..+..+--+ ++...|-.- ++....+.|..+
T Consensus 263 dl~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred cHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH----HhcCChHHHHHH
Confidence 3467888888998888887 66666776666666677888888877654322 222223222 233445555555
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CC
Q 005174 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RD 239 (710)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 239 (710)
.-...+. -|+.. ..-+.+.--..+...-..+++....-++.++..|-..+. ....+.|.-++.+..+ .+
T Consensus 338 vA~Avr~--~P~Sv--~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 338 VANAVRF--LPTSV--RLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVE----LEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHHh--CCCCh--hhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHh----ccChHHHHHHHHHHHHhccch
Confidence 5554442 23322 223333333333444456666666667888888876654 4566668888887744 24
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCChhHHHH
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR----MRTQETYLDSVATVI 315 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ 315 (710)
...|. ++++..-++.|.++++..++. ++-+...|.+-...=-.+|+.+.+..++.+ +...|+..+..-|..
T Consensus 410 ~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 44454 566677789999999999876 777888998888888899999999988765 456799999999988
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 005174 316 GLGACSHVGALKLGKEIHGSAVRGCYGEYE--NVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLD 390 (710)
Q Consensus 316 ~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 390 (710)
-..+|-..|..-.++.|...++..|++... .+|..-...+.+.+.++-|+.+|....+ .+...|......--..|
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence 889999999999999999999998886543 5678888889999999999999987654 35678888887777889
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 391 CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
-.+....+|++.... ++-....+.......-..|++..|+.++..+.+.. +.+..+|-+-+........++.|..+|
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999887 23334455555556667899999999999999986 567889999999999999999999999
Q ss_pred hhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 471 DLMS--RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 471 ~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
.+.. .++...|.--+...--.++.++|++++++.++. -|+ ...|..+.+-+-..++++.|...|..=.+ .-|
T Consensus 642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP 716 (913)
T KOG0495|consen 642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCP 716 (913)
T ss_pred HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCC
Confidence 9876 457778887777778889999999999998874 566 45677777888889999999998876543 467
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC----------
Q 005174 548 Q-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---------- 614 (710)
Q Consensus 548 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------- 614 (710)
+ +..|-.|.+.=-+.|.+-+|..++++.. .+.+...|-..|..-.++|+.+.|+....++++-.|.+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 6 7788889999999999999999999884 44588999999999999999999999999988877764
Q ss_pred --------------------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeE
Q 005174 615 --------------------SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAW 654 (710)
Q Consensus 615 --------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 654 (710)
+......+.++-...+++.|.+.+.+....+. ..|..|
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~w 854 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAW 854 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHH
Confidence 44555666667777777777777766554333 344444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-13 Score=131.93 Aligned_cols=464 Identities=13% Similarity=0.089 Sum_probs=309.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHcccCCchHHHHHHHHHH-hcCCC----hHHHHHHHHHHH
Q 005174 146 LISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPS-VLKACGEMMDVDFGRVVHSCID-ACHEW----SLFVHNALVSMY 219 (710)
Q Consensus 146 li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~-~g~~~----~~~~~~~li~~~ 219 (710)
|.+-|..+....+|+..|+-+.+...-|+.-.+.. +-+.+.+.+++..|..++++.. .-... -..+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 45667778888999999999988877787765432 3355677888889999998877 22222 234556666678
Q ss_pred HhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH--------HHHHHHHHhcC
Q 005174 220 GKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW--------NTIAGGCLRTG 289 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~g 289 (710)
.+.|+++.|+..|+...+ |+..+--.|+-++.--|+.++..+.|.+|..--..||..-| ..|+.--.++.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 899999999999998854 66665444555566678999999999999765333332211 22222222221
Q ss_pred Ch-----------HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 005174 290 NF-----------KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358 (710)
Q Consensus 290 ~~-----------~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 358 (710)
.. ++++-.-..+..--+.|+-.. ..+-+.+.+..-....+..+.. -.-..-|.+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhc
Confidence 11 111111111111112222110 0011111111110000001111 1122357899
Q ss_pred CCHHHHHHHHHhcCCCChhHH----HHHH-HHHHh-cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 359 KDLRHAYILFKMTAEKSIITW----NSML-SGYTH-LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~----~~li-~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|+++.|.++++-...+|..+- |.|- --|.+ ..++..|-+.-...+... +-+....+.--+.....|++++|..
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 999999999887776654332 2222 22333 334666666555544332 2233333333333456789999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
.+.+.+... ...+...-.+.-.+-+.|++++|++.|-++. ..+......+.+.|-...+...|++++.+.... +
T Consensus 512 ~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 999998875 3333334444556788999999999998765 457778888889999999999999999877653 4
Q ss_pred CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005174 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATL 587 (710)
Q Consensus 510 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 587 (710)
+.|+..++-|...|-+.|+-.+|.+.+-.-- ..-| +.++...|..-|....-+++|+.+|++.. ..|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 5567788889999999999999998876543 4445 48888889999999999999999999985 78999999999
Q ss_pred HHHH-HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 588 LGAC-QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 588 ~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+..| ++.|++.+|...++......|.+......|+.+....|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9776 678999999999999999999999999999999888874
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-11 Score=128.95 Aligned_cols=538 Identities=10% Similarity=0.046 Sum_probs=348.5
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhh---CCCCCCccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVEN---SNIRYPLPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l 162 (710)
..|+.+.|..++..+++.. +.+...|..|..+|-..|+.+++...+-. +.+.|..-|-.+..-..+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999999999886 67788899999999999999999877644 4455666788888888899999999999
Q ss_pred HHHHHhCCCCCCcc-cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHH----HHHHHHHhcCCHHHHHHHHhhcC
Q 005174 163 YKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHN----ALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 163 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
|.+..+. .|+.. .+--=...|-+.|+...|..-+..+. ...+.|..-.. ..+..|...++-+.|.+.++...
T Consensus 230 y~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 230 YSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998875 33332 22333455777888888888888777 33333333333 33555666777788888888875
Q ss_pred C--C---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc----------------------eehHH----HHHHHH
Q 005174 237 E--R---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN----------------------VITWN----TIAGGC 285 (710)
Q Consensus 237 ~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------------~~~~~----~li~~~ 285 (710)
. . +...+|.++..|.+...++.+......+......+| ..+|+ -++-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 4 2 445688888889999999999888888766222221 11221 122233
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYL--DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRH 363 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p--~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 363 (710)
.+.+..+....+..-..+.++.| +...|.-+..++...|.+..|..++..+.......+..+|--+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 34444444444444455555333 4556788888999999999999999999888777778889999999999999999
Q ss_pred HHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH--------cCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 364 AYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFR--------SGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 364 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|...|+.+... +...--+|-..+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999887653 334445566678889999999999988642 2345555555566666777777666554
Q ss_pred HHHHHHHhCC----C-----------------CCchHHHhHHhhhhhhcCChhHHHHHHhh--------cCCCChh----
Q 005174 433 FHCYILRRAM----F-----------------NEHLLLWNSLVEMYARSGKVPEAKSVFDL--------MSRRDEV---- 479 (710)
Q Consensus 433 ~~~~~~~~~~----~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~~~---- 479 (710)
+-..++.... + +........++.+-.+.++......-... ...-...
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 4444332210 0 01111122222222233222211111110 0011122
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChH--HH-HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQI--KPDHV--TM-VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 551 (710)
.+.-++.++++.+++++|+.+...+..... .++.. .+ ...+.++...+++..|...++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 234567788999999999999988876432 22221 22 33455667889999999999999877555433 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGA--CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
|++..+.+.+.|+-.--.+++... ...|+......++.+ ....+.+.-|...+-.+....|++|-.-.|++-++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666666666544444444443 223333222222222 234455666889999999999999998888887765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-12 Score=121.82 Aligned_cols=237 Identities=11% Similarity=0.091 Sum_probs=161.8
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+.+++..+|.++++-...+.|.+++++..+...+.+.. +|+.+|.+.+ +..++.+...|+...+.||.+++|++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~--aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYRE--AFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHH--hhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 44566677777777666777777777766666665555 6666665533 33346666667666667777777666
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchH-H
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDF-G 194 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a 194 (710)
+++.++.|+++.|++ .|++++.+|++.|+.|...+|..+|..+.+.++... +
T Consensus 280 L~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred HHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 666666666666543 456788899999999999999999999888887744 3
Q ss_pred HHHHHHHH---hc--C----CChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C---hhHHHHHHHHHHhCC
Q 005174 195 RVVHSCID---AC--H----EWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--------D---AVSWNTMISAYASKG 254 (710)
Q Consensus 195 ~~~~~~~~---~g--~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g 254 (710)
..+...+. .| + +.|...+...+..|.+..+.+.|.++-.-+... + ..-|..+....|+..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 33333333 23 2 235566677788888888888888776555221 1 223455666677777
Q ss_pred ChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 255 LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 255 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
..+....+|+.|.-.-+-|+..+...++++..-.|.++-.-+++.+++..|
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 777888888888666666777777777777777777777777777777665
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=143.37 Aligned_cols=253 Identities=14% Similarity=0.120 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL-PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (710)
...+.+.|++++|++++++......+|+...|-.++ ..+...++.+.|.+.+..+...+ +.++..+..++.. ...+
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cccc
Confidence 344555666666666665443332233333333332 34445566677777777666655 3355566777776 6888
Q ss_pred ChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 462 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (710)
++++|.+++...-+ ++...+..++..+...++++++..++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999888876643 466778888899999999999999999987632 345677788888889999999999999999
Q ss_pred HHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 539 MTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 539 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
..+. .|+ ......++..+...|+.+++.++++... .+.|...|..+..++...|+.+.|...++++.+.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9875 786 7888999999999999999888887662 234667888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.....+++++...|+.++|.+++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-11 Score=118.63 Aligned_cols=504 Identities=12% Similarity=0.070 Sum_probs=275.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHh--CCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCch-hhHHH
Q 005174 40 LLETLKDFAGRGNLSKAFEAFTRIRIT--AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVL-VPKLV 116 (710)
Q Consensus 40 ~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 116 (710)
+-..+.--...|+-+.|+---++-... .+..+.....+..|..-|.......+|...++.+++...-|+... -..+.
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 444445555666666665433221111 122222111445556666666677788888888888776666543 34556
Q ss_pred HHHHccCChhHHHHhHhh----CCCCCCc----cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHccc
Q 005174 117 TFYASFSLYNNACFLVEN----SNIRYPL----PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188 (710)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~----~~~~~~~----~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (710)
+.|.+...+..|++.+.. ++.-+.. ..+.+-..+++.|.++.|+.-|+...+. .|+-.+-..|+-++...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 777788888888877653 2322221 2344445677888888888888886653 46666555555555667
Q ss_pred CCchHHHHHHHHHH--hcCC-----------ChHHHHHHHHH-----HHHhc--CCHHHHHHHHhhcCCCChhH-HHHHH
Q 005174 189 MDVDFGRVVHSCID--ACHE-----------WSLFVHNALVS-----MYGKF--GQVDVARRLFDKMLERDAVS-WNTMI 247 (710)
Q Consensus 189 ~~~~~a~~~~~~~~--~g~~-----------~~~~~~~~li~-----~~~~~--g~~~~A~~~~~~~~~~~~~~-~~~li 247 (710)
|+.+..++.|..++ .|.. |+....|.-|. -.-+. .+.++++-.--++..|-..+ |.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa--- 399 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA--- 399 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---
Confidence 77777777777776 3432 22222221111 00000 11111111111111110000 00
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhH--HHHHHHHhhccCC
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVA--TVIGLGACSHVGA 325 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~~l~~~~~~~~ 325 (710)
. -.+-+++.+..-.-..+..+. --.-..-+.++|+++.|+++++-.....-+.-... -..++.....-.+
T Consensus 400 -----~-g~dwcle~lk~s~~~~la~dl--ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 400 -----A-GCDWCLESLKASQHAELAIDL--EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred -----c-ccHHHHHHHHHhhhhhhhhhh--hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 0 011122222111110000010 01123357788999999999988876643322221 2222333333345
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHH
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSM---LSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m 402 (710)
+..+.+.-+..+...- .+......-.+.-...|++++|...+++....|...-.+| .-.+-..|+.++|++.|-++
T Consensus 472 ~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 472 FADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred hhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 6666666555443221 1111111111223345788888888887776655433222 23456678888888887766
Q ss_pred HHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChh
Q 005174 403 FRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEV 479 (710)
Q Consensus 403 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~ 479 (710)
..- +.-+...+..+.+.|....+...|.+++...... ++.|+.+...|.+.|-+.|+-..|.+..-.--+ .|..
T Consensus 551 h~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie 627 (840)
T KOG2003|consen 551 HAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE 627 (840)
T ss_pred HHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH
Confidence 432 2334555666666777777777777776665554 567777778888888888877777665543221 2566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh-hccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 558 (710)
+..-|..-|....-+++|+.+|++..- ++|+..-|..++..| .+.|++..|..+++....+ +..+.++...|+..
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri 703 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 666666667777777777777776543 577777777666655 4567777777777776654 44556666666666
Q ss_pred HHhcCC
Q 005174 559 YGRAGL 564 (710)
Q Consensus 559 ~~~~g~ 564 (710)
+...|.
T Consensus 704 ~~dlgl 709 (840)
T KOG2003|consen 704 AGDLGL 709 (840)
T ss_pred hccccc
Confidence 666553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-11 Score=122.45 Aligned_cols=517 Identities=12% Similarity=0.030 Sum_probs=304.7
Q ss_pred HHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCC----CccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 005174 96 LHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRY----PLPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171 (710)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 171 (710)
++..+...|+.|+..+|.++|.-|+..|+++.|- +|.-|.-++ -..++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4566677899999999999999999999999998 888876443 346899999988888887775
Q ss_pred CCCcccHHHHHHHHcccCCchHHHHHHH---HHH-----hcCC--------------ChHHHHHHHHHHHHhcCCHHHHH
Q 005174 172 RGDNFTYPSVLKACGEMMDVDFGRVVHS---CID-----ACHE--------------WSLFVHNALVSMYGKFGQVDVAR 229 (710)
Q Consensus 172 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~---~~~-----~g~~--------------~~~~~~~~li~~~~~~g~~~~A~ 229 (710)
.|.+.||..|+.+|+..||+..-..+-+ .+. .|.. ........++....-.|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998764322222 221 1211 11111123344445567788888
Q ss_pred HHHhhcCCCC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 005174 230 RLFDKMLERD-AVSWNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY 307 (710)
Q Consensus 230 ~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 307 (710)
+++..+|... ....-.+++-+..... ...++....+. +. .|+..+|.+++..-..+|+.+.|..++.+|++.|..
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~nt--pvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNT--PVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCc--hHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8887776421 0011112444433332 22333333322 22 589999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005174 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYT 387 (710)
Q Consensus 308 p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 387 (710)
.+.+.|..++-+ .++....+.+..-|...|+.|+..++...+-.+.++|....+....+.-.--....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 999999888866 78888999999999999999999998877777766555333222111100011122333333322
Q ss_pred hcCCh-----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCCchHHHhHHhhhhhhc
Q 005174 388 HLDCA-----EESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAM--FNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 388 ~~g~~-----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 460 (710)
.+.+. .-....+++..-.|+......|..... ....|.-+...++-..+..-.. -..++..+..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr----- 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR----- 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH-----
Confidence 12221 122233333333344433333322222 2225555555555554432110 1112223333333
Q ss_pred CChhHHHHHHhhcCCCChh-HHHHHHHHHHh---cCChHHHHHHHHHHH------------H----CCCCC-------Ch
Q 005174 461 GKVPEAKSVFDLMSRRDEV-TYTSLIAGYGI---QGEGRVALKLFEEMN------------K----NQIKP-------DH 513 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m~------------~----~g~~p-------~~ 513 (710)
..|.++..+... .++ .-.+... .....+..++....+ . ....| -.
T Consensus 388 -------qyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 388 -------QYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred -------HHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 333333333211 111 1111111 111111111111110 0 00111 11
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPTSAMWATLL 588 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~l~ 588 (710)
..-+.++..|.+.-+..+++..-+..... .-| ..|..||+.+......++|..+.++.. ..-|..-+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~--lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL--LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 12234444555555555555444433321 122 568999999999999999999999885 222344566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhh---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcC
Q 005174 589 GACQIHRNTGIGEWAAEKLLET---RPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 648 (710)
+...+++....+...++...+. .|........+.+..+..|+-+...++.+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 7777777776666666655542 23334556677777888899888888888888888754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-09 Score=105.36 Aligned_cols=447 Identities=12% Similarity=0.062 Sum_probs=213.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
|-...+--...+++..|..+|++...-. .-+...|..-+..=.+...+..|+.+++..+.-+|.--..|-..+.+=-..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3333333344555666666666665421 112222222233333444555555555555533333334444444444445
Q ss_pred CCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH
Q 005174 223 GQVDVARRLFDKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 223 g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (710)
|++..|.++|++- -+|+...|++.|..=.+-+.++.|..++++..- +.|++.+|--....=.+.|+...+..+|..
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5566666666554 235555566666555555555566666555543 345555555555555555555555555555
Q ss_pred HHhC-CC-CCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 005174 301 MRTQ-ET-YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY-ENVRNALITMYSRCKDLRHAYILFKMTAEKSII 377 (710)
Q Consensus 301 m~~~-~~-~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (710)
..+. |- ..+...|.+....-.+...++.+.-++...+.+-.... ...|..+...--+.|+........-.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~------- 305 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG------- 305 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-------
Confidence 4432 10 00011111111111222334444444444443321111 12222222222222332221111100
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCch--HHHhHHhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHL--LLWNSLVE 455 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~ 455 (710)
+-.--++.+++.+ +.|-.++--.+..-...|+.+..++++..++.+- +|-. ..|.-.|-
T Consensus 306 ----------------KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 306 ----------------KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIY 366 (677)
T ss_pred ----------------hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHH
Confidence 0000122222221 3344445555555555555666666665555542 3311 11111111
Q ss_pred hh--------hhcCChhHHHHHHhhcCCC---Chh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005174 456 MY--------ARSGKVPEAKSVFDLMSRR---DEV----TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520 (710)
Q Consensus 456 ~~--------~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 520 (710)
.. ....+++.+.++|+...+- ... .|-.......++.+...|.+++...+ |.-|-..+|...|
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHH
Confidence 11 1245566666666554421 222 23333333445566666666666654 4566666676666
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcC
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTP----TSAMWATLLGACQIHR 595 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~g 595 (710)
..-.+.+.++....++++..+ ..|. ..+|.-....=...|+.+.|..+|+-.-..| -...|.+.|..-...|
T Consensus 445 elElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~ 521 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG 521 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc
Confidence 666666677777777776664 3554 5566666666666677777777776553333 2445666666666667
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
.++.|...++.+++..+... .|...+.-
T Consensus 522 E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred hHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 77777777777766655432 44444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-12 Score=128.88 Aligned_cols=273 Identities=14% Similarity=0.065 Sum_probs=208.1
Q ss_pred CHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 360 DLRHAYILFKMTAEK--SI-ITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 360 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
+..+|...|...+.. |+ .....+..+|...+++++|.++|+...+.. ..-+...|.+++-.+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886542 33 445667888999999999999999987753 122456777777654321 222222
Q ss_pred H-HHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005174 435 C-YILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510 (710)
Q Consensus 435 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (710)
. .++.. -+..+.+|.++.++|.-+++.+.|.+.|++..+-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 23333 36668889999999999999999999999888654 45788888888888899999999998864 34
Q ss_pred CCh-HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHH
Q 005174 511 PDH-VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWAT 586 (710)
Q Consensus 511 p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ 586 (710)
|.. ..|-.+...|.+.++++.|+-.|+++. .+.|. .....++...+-+.|+.|+|++++++.- .. .|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 433 356667778899999999999999887 47887 7777888889999999999999999873 22 35555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+..+...+++++|...++.+.++.|++...|..++.+|.+.|+.+.|+.-+..+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666677778889999999999999999999999999999999999999877666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-12 Score=128.62 Aligned_cols=246 Identities=11% Similarity=0.093 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-CchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFN-EHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
..+|+..|.....+ +.-+......+-.+|...+++++++.+|+.+.+..+.. .+..+|.+.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45556666553332 22223444445556666666666666666665543221 23444444442222111111111111
Q ss_pred hhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-
Q 005174 471 DLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ- 548 (710)
Q Consensus 471 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 548 (710)
-.+....+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence 111223455666666666666666666666666554 344 34455555444555555666666665543 22222
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
-..|.-+.-.|.+.++++.|+-.|++. .+.| +.+..-.+...+.+.|+.++|.+.++++.-++|.++-.-+..+.++.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 222223445556666666666666555 2444 33333444444555566666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++++++
T Consensus 569 ~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKE 585 (638)
T ss_pred hhcchHHHHHHHHHHHH
Confidence 66666666666655544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-09 Score=100.56 Aligned_cols=412 Identities=13% Similarity=0.117 Sum_probs=266.8
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCC--CCC-ccHHHHHHHHHhCCCchHHHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNI--RYP-LPWNLLISLYVRDGFYAEALCV 162 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~l 162 (710)
..+++..|.++++.++... ..+..+|-..+.+=.++..+..|+.+|+.... |-+ -.|-..+-.--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566777888888877665 55666777777777777888888888876431 111 1244455555566888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 005174 163 YKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER---- 238 (710)
Q Consensus 163 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 238 (710)
|++-.+ ..|+...|.+.++.=.+...++.|+.+++...... |++..|-.....=-++|....|..+|+...+.
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 887665 57888888888888777788888888888776322 77888877777777888888888888776432
Q ss_pred --ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCc--eehHHHHHHHHHhcCChHHHHHHH--------HHHHhCCC
Q 005174 239 --DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVN--VITWNTIAGGCLRTGNFKGVLELL--------SRMRTQET 306 (710)
Q Consensus 239 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~--------~~m~~~~~ 306 (710)
+...+++...-=.+...++.|.-+|.-..+. ++.+ ...|......=-+.|+.....+.. +.+... -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 2223444444444556677777777766654 2222 233444444434455544443332 222222 2
Q ss_pred CCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhH-HHHHH--------HHHHhcCCHHHHHHHHHhcCC---C
Q 005174 307 YLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENV-RNALI--------TMYSRCKDLRHAYILFKMTAE---K 374 (710)
Q Consensus 307 ~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~-~~~li--------~~~~~~g~~~~A~~~~~~~~~---~ 374 (710)
+.|-.++.-.+..-...|+.+...++++..+..-.+..... |.-.| ---....+.+.+.++|+...+ .
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 33455666666666677888888888877776543322211 11111 111345677777777765433 2
Q ss_pred ChhH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIIT----WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
...| |-.....-.++.+...|.+++...+ |.-|-..+|..-|..=.+.+.++.++.++.+.+.-+ |.+..+|
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W 474 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAW 474 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHH
Confidence 2233 3333333456677778887776655 557888888888887788888888888888888875 6667777
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSR-R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
......-...|+.+.|..+|+-..+ | ....|-+.|..-...|.+++|..+|+++++.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 7777777788888888888886553 3 3456777777777788888888888888774
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-10 Score=108.91 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=166.8
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
+.++..+.+-|+-.++.++|...|++..+- ....|+.|.+-|...++...|++-+++..+-. +-|-..|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 445666677777778888888888877654 35678889999999999999999999988742 33677899999999
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
.-.+...-|+-+|++... ++|+ ...|.+|.++|.+.++.++|++-|.+.- ..-+...+..|...+.+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999998874 6776 8899999999999999999999998873 233557888889999999999999
Q ss_pred HHHHHHHHh-------hCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcc
Q 005174 601 EWAAEKLLE-------TRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQ 673 (710)
Q Consensus 601 ~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 673 (710)
...+++.++ .+|+...+..-|+.-+.+.++|++|......... ..+.
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--------------------------~~~e 539 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK--------------------------GETE 539 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--------------------------CCch
Confidence 999988877 3444455566688888999999999886444321 2456
Q ss_pred hhhHHHHHHHHHHHHH
Q 005174 674 AQEIYPLLGGLTELMK 689 (710)
Q Consensus 674 ~~~~~~~l~~l~~~~~ 689 (710)
.++...++.++++.|.
T Consensus 540 ~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 540 CEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6777777777777663
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.2e-11 Score=121.29 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=139.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 428 (710)
...+...|+++.|...++...+ .+......+...|.+.|++++|..++..+.+.+..++.. +..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------
Confidence 4556666777777777666543 244566667777777777777777777777765432221 11000
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00112222222233344555555555542 356667777777777788888888877777
Q ss_pred HCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 005174 506 KNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAM 583 (710)
Q Consensus 506 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 583 (710)
+. .||.... ++.+....++.+++.+..+...+. .|+ ...+.++...+.+.|++++|.+.|+.. ...|+...
T Consensus 291 ~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 291 KR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred hc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 63 4444211 223334457777788777777764 555 556777788888888888888888776 35677777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
+..|...+...|+.++|.+.+++.+.+.
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7777778888888888888887776653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-10 Score=110.37 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=171.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
-.|+.-.+.+-++.++... +.+...|--+..+|....+.++....|++..+ .|+.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3577888888888888875 33344477778889999999999999998764 367788888888888899999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 500 LFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
=|++.+. +.|+ ...|.-+--+..+.+.++++...|++.+++ -|+ +++|+.....+...+++++|.+.|+.. .
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999987 4554 456666666667889999999999999986 355 889999999999999999999999976 2
Q ss_pred CCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 577 YTPT---------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 577 ~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|+ ..+-.+++ ..+..+|+..|+..++++++++|.....|..|+.+....|+.++|++++++-.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333 22222222 23345999999999999999999999999999999999999999999988654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-09 Score=102.69 Aligned_cols=153 Identities=12% Similarity=0.061 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
-|.-.++.++|+..|++.++.+ +-....++.+-+-|....+...|.+.++.+++-+ +.|-..|-.|.++|.-.+...
T Consensus 339 YYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 339 YYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchH
Confidence 3333444444444444444332 1111223333333444444444444444444432 444444444555555444444
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 465 EAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 465 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+-+.++..+|.+.|++..+
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444331 144455555555555555555555555444433 12334444444444444555555444444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=119.28 Aligned_cols=275 Identities=10% Similarity=0.016 Sum_probs=207.2
Q ss_pred cCCHHHHHHHHHhcCCC--Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhccCchHHHHH
Q 005174 358 CKDLRHAYILFKMTAEK--SI-ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA--SILPLCARVANLQHGKE 432 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 432 (710)
.|+++.|++.+....+. +. ..|-.......+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888888765543 22 23323334447889999999999998765 55554333 33457778899999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh-----------hHHHHHHHHHHhcCChHHHHHHH
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-----------VTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... ..|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998875 67788899999999999999999999988875421 13444444444555666777777
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP- 579 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 579 (710)
+.+.+. .+.+......+..++...|+.++|..++++..+. .|+.... ++......++.+++.+.+++. +..|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 776543 3457778888999999999999999999988763 4554222 233334569999999999877 3445
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|...+.++...|...+++++|...++.+++.+|++ ..|..++.++.+.|+.++|.+.+++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667788899999999999999999999999975 5578999999999999999999886543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-09 Score=106.10 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
+...-....-+...+++.+..+++....+.. ++....+..-|..+...|+..+-..+-..+++. .|..+.+|-++..
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGC 320 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHH
Confidence 3344444555677889999999999988764 455555555566777777777766666777776 5788889999999
Q ss_pred hhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEG 532 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 532 (710)
-|.-.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999877554 458999999999999999999999887663 222222333344457888999999
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 533 QKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--------YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 533 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.++|.... ++.|+ +..++-+.-+....+.+.+|...|+..- ..+ =..+|+.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999886 67887 7778888878888899999999998652 111 23467888899999999999999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.+++.+.+.|.++.+|..++-+|.-.|+++.|.+.+.+..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-07 Score=95.06 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=77.3
Q ss_pred HHhcccCchHhHHHHHHHHHHh-CCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHH
Q 005174 82 FCCGKVKALAQGKQLHACAIAL-GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEAL 160 (710)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 160 (710)
......+++...+..|+..+.. .+.....+|...+......|-++-+..++.+..+-++.+-+..|..+++.++.++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 3334445555555555555443 233344556655655555566666666666655555555556666666666666666
Q ss_pred HHHHHHHhCC------CCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcC--CCh--HHHHHHHHHHHHhcCCHHHHHH
Q 005174 161 CVYKQMQSRR------IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACH--EWS--LFVHNALVSMYGKFGQVDVARR 230 (710)
Q Consensus 161 ~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~ 230 (710)
+.+....... -+-+...|..+....++..+.-....+-.-+..|+ -+| ...|++|.+.|.+.|.++.|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6665554221 11122234333333333333222222222222222 122 2456666666666666666666
Q ss_pred HHhhcC
Q 005174 231 LFDKML 236 (710)
Q Consensus 231 ~~~~~~ 236 (710)
+|++..
T Consensus 270 vyeeai 275 (835)
T KOG2047|consen 270 VYEEAI 275 (835)
T ss_pred HHHHHH
Confidence 666653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-09 Score=113.91 Aligned_cols=225 Identities=9% Similarity=-0.058 Sum_probs=121.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 005174 351 LITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427 (710)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 427 (710)
....+...|+++.|...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+.......-..+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a------- 231 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA------- 231 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-------
Confidence 34555566666666666665543 24455566666677777777777777777666532222110000000
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEM 504 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (710)
+..++..-......+.....++...+ .+...+..+...+...|+.++|.+++++.
T Consensus 232 ----------------------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 232 ----------------------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred ----------------------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11111111111223344444444442 36667777777788888888888888887
Q ss_pred HHCCCCCChHHH---HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHh--C-
Q 005174 505 NKNQIKPDHVTM---VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-L--EHFACMVDLYGRAGLLNKAKEIITK--M- 575 (710)
Q Consensus 505 ~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~--m- 575 (710)
.+. .||.... ..........++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.+.|+. .
T Consensus 290 l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 290 LKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred Hhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 764 3443311 11111123345666666666666654 444 2 4455666666677777777776662 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 576 PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 576 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
...|+...+..+...+.+.|+.+.|.+.+++.+.
T Consensus 365 ~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 365 KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666666666666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-12 Score=126.17 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=60.8
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhh
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMS-----RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACS 524 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 524 (710)
..++..|.+.++++++.++++.+. ..+...|..+...+.+.|+.++|+..|++..+. .|+ ......++..+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 333444444444444444444322 123344444555555555555555555555542 332 334444555555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
..|+.+++.++++...+. ...+...+..+..+|...|+.++|+..+++.- ..| |......+..++...|+.+.|..
T Consensus 192 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 555555555555555443 12223444555555555555555555555541 122 44444455555555555555555
Q ss_pred HHHHHH
Q 005174 603 AAEKLL 608 (710)
Q Consensus 603 ~~~~~~ 608 (710)
+.+++.
T Consensus 270 ~~~~~~ 275 (280)
T PF13429_consen 270 LRRQAL 275 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-09 Score=110.02 Aligned_cols=139 Identities=9% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH-HHHH--HHhccCchHHHHHHH
Q 005174 361 LRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA-SILP--LCARVANLQHGKEFH 434 (710)
Q Consensus 361 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~--~~~~~~~~~~a~~~~ 434 (710)
.+...+.++..++ .+...+..+...+...|+.++|.+++++..+.. ||..... .++. .....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 4455555555554 367778888888888888888888888888763 4433110 0111 112234445555555
Q ss_pred HHHHHhCCCCCch--HHHhHHhhhhhhcCChhHHHHHHhh--c--CCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 435 CYILRRAMFNEHL--LLWNSLVEMYARSGKVPEAKSVFDL--M--SRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 435 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
+...+.. +.++ ....++...|.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++
T Consensus 323 e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 323 EKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544442 2222 3444444444444444444444441 2 123333344444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.7e-07 Score=90.41 Aligned_cols=93 Identities=9% Similarity=0.061 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHh-CCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRIT-AASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
+++|..-+..+..+|+...-...|.....+ .+..... .+...+.-....+-++.+..+++..++.. +..-+-.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~r--IW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eey 175 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDR--IWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEY 175 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhcc--chHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHH
Confidence 345555556666777777777777766554 2223333 56666666666667777777777777653 3335666
Q ss_pred HHHHHccCChhHHHHhHhhC
Q 005174 116 VTFYASFSLYNNACFLVENS 135 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~ 135 (710)
|..+++.+++++|.+.+...
T Consensus 176 ie~L~~~d~~~eaa~~la~v 195 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATV 195 (835)
T ss_pred HHHHHhccchHHHHHHHHHh
Confidence 77777788888877766553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-09 Score=99.49 Aligned_cols=285 Identities=15% Similarity=0.097 Sum_probs=156.5
Q ss_pred CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005174 289 GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILF 368 (710)
Q Consensus 289 g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 368 (710)
|+|..|++++.+-.+.+-.| ...|.....+....|+.+.+.....++.+..-.++..+.-+........|+++.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555554444443222 22233444445555555555555555555433445555556666667777777776666
Q ss_pred Hhc---CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC
Q 005174 369 KMT---AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE 445 (710)
Q Consensus 369 ~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 445 (710)
++. ..++.........+|.+.|++.....++..|.+.|+--+...- ..
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------------------~l 227 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------------------RL 227 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------------------HH
Confidence 543 3456677777888888888888888888888888755443210 00
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
...+|+.+++-....+..+.-...|+...+ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 112233333333333333333334444432 2444455555666666666666666666666655554 112223
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
+.+.++...-.+..+...+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455555555555555555433333 44556666666666666666666644 35566666666666666666666666
Q ss_pred HHHHHHHh
Q 005174 602 WAAEKLLE 609 (710)
Q Consensus 602 ~~~~~~~~ 609 (710)
+..+..+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 65555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-09 Score=95.41 Aligned_cols=157 Identities=12% Similarity=0.092 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----HHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSI---ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV----TIASILPLC 421 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~ 421 (710)
..|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-...+|++|++.-+++...|-.+..+ .|.-+....
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 4566778888889999999988776433 456667888999999999999988888876555433 233344444
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChh----HHHHHHHHHHhcCChHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV----TYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A 497 (710)
....+++.|...+.+..+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|+.++.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 191 LASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 45556666666666666654 444444445555555666666666666655544432 344455555666666666
Q ss_pred HHHHHHHHHC
Q 005174 498 LKLFEEMNKN 507 (710)
Q Consensus 498 ~~~~~~m~~~ 507 (710)
+..+.++.+.
T Consensus 269 ~~fL~~~~~~ 278 (389)
T COG2956 269 LNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHc
Confidence 6655555553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-08 Score=98.97 Aligned_cols=286 Identities=13% Similarity=0.046 Sum_probs=147.8
Q ss_pred ceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHH
Q 005174 274 NVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALIT 353 (710)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 353 (710)
+......-..-+...+++.+..++.+...+.. ++....+..-|..+...|+...-..+-..+++. .|..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444444555666677777777777776643 122222223333444444443333332222222 3445556666666
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHG 430 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 430 (710)
.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+---|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 6767777777777776544322 246777777777777777777766655442 011111112222234555666666
Q ss_pred HHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 005174 431 KEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK 510 (710)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (710)
.++|...... .|.|+.+.+-+.-.....+.+.+|...|+....+ .+..... ..
T Consensus 400 e~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------ik~~~~e-~~ 452 (611)
T KOG1173|consen 400 EKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------IKSVLNE-KI 452 (611)
T ss_pred HHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------hhhcccc-cc
Confidence 6666665554 2555555555555555555555555555543210 0000000 00
Q ss_pred CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005174 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLG 589 (710)
Q Consensus 511 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 589 (710)
--..+++.|..+|.+.+.+++|...++..... ..-+..++.++.-.|...|+++.|.+.|.+. -..||...-..++.
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 12234555556666666666666666665542 2223555666666666666666666666554 34555555555554
Q ss_pred HH
Q 005174 590 AC 591 (710)
Q Consensus 590 ~~ 591 (710)
.+
T Consensus 531 ~a 532 (611)
T KOG1173|consen 531 LA 532 (611)
T ss_pred HH
Confidence 43
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-09 Score=101.21 Aligned_cols=282 Identities=12% Similarity=0.054 Sum_probs=216.3
Q ss_pred hCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHH
Q 005174 49 GRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNA 128 (710)
Q Consensus 49 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 128 (710)
..|+|.+|.++..+-.+.+..|-. .|..-..+....|+.+.+..+...+-+..-.++..+.-+........|+++.|
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l---~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVL---AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHH---HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 389999999999998888888765 67777788888999999999999888774356667778888889999999999
Q ss_pred HHhHhh---CCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHcccCCchHHHHHH
Q 005174 129 CFLVEN---SNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN-------FTYPSVLKACGEMMDVDFGRVVH 198 (710)
Q Consensus 129 ~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~ 198 (710)
+.-++. |...++.......++|.+.|++.....++..|.+.|+--|. .+|..+++-+...+..+.-+..+
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 988776 45677788899999999999999999999999999876554 36777787777777777666777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 199 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
+......+.++..-.+++.-+.++|+.++|.++..+..++ |.. -...-.+.+-++...-.+..+.-... .+-+..
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 7766666667777788888899999999999888777543 333 11223455667777777776665443 223446
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005174 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVR 338 (710)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~ 338 (710)
.+.+|...|.+++.|.+|...|+...+ ..|+..+|..+-.++...|+...+.+.....+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 778888888888999999988886555 356777777777777777777777766665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-10 Score=106.13 Aligned_cols=198 Identities=16% Similarity=0.102 Sum_probs=163.5
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVL 520 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 520 (710)
......+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 33456778888889999999999999987653 256678888899999999999999999998753 33456777788
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|.+.++..... ...| ....+..+...+.+.|++++|.+.+++.- ..| +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIED-PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 8889999999999999998864 2223 35677788999999999999999998872 233 466788888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.|...++++.+..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999888888899999999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-08 Score=90.59 Aligned_cols=455 Identities=12% Similarity=0.053 Sum_probs=243.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccC
Q 005174 44 LKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFS 123 (710)
Q Consensus 44 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 123 (710)
+.-+..+.++..|+.+++.-...+-.-... +-..+..++...|++++|...+..+.... .++..++..|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~--~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDS--LQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHH--HHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 556677888888888887765443333323 44455666667777777777777666533 555666666666655566
Q ss_pred ChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHh
Q 005174 124 LYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDA 203 (710)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 203 (710)
.+.+|..+-.+.+ +....+. .++...-+.++-+.-..+++.+.
T Consensus 106 ~Y~eA~~~~~ka~--k~pL~~R----------------------------------LlfhlahklndEk~~~~fh~~Lq- 148 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP--KTPLCIR----------------------------------LLFHLAHKLNDEKRILTFHSSLQ- 148 (557)
T ss_pred HHHHHHHHHhhCC--CChHHHH----------------------------------HHHHHHHHhCcHHHHHHHHHHHh-
Confidence 6666665544322 1111111 12222223333333333333332
Q ss_pred cCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCceehHHH
Q 005174 204 CHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER--DAVSWNTM-ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNT 280 (710)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 280 (710)
....---+|..+....-.+.+|++++.++... +-...|.- .-+|.+..-++-+.+++.-..+. ++-+...-|.
T Consensus 149 ---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NL 224 (557)
T KOG3785|consen 149 ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNL 224 (557)
T ss_pred ---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHH
Confidence 01122234444444445688899998888654 33344443 34677777777777777766554 4434455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCC
Q 005174 281 IAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKD 360 (710)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~ 360 (710)
......+.=+-..|.+-.+++.+.+-.- | ..+.. +.++++ .-...
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~----~-------------~f~~~----l~rHNL--------------VvFrn 269 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQE----Y-------------PFIEY----LCRHNL--------------VVFRN 269 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhccccc----c-------------hhHHH----HHHcCe--------------EEEeC
Confidence 5544444333333444444444332110 0 00000 011100 00111
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Q 005174 361 LRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRR 440 (710)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 440 (710)
-+.|.+++-.+...=+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+ ..|
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a--alG--------------- 330 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA--ALG--------------- 330 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH--Hhh---------------
Confidence 12333333222221112223344456677777777777666521 12322222222221 111
Q ss_pred CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 005174 441 AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT 515 (710)
Q Consensus 441 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 515 (710)
+-......+.-|...|+-.-.. ++.--.++..++.-..++++.+-.+..+..-=..-|.+.
T Consensus 331 --------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 331 --------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred --------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 1111112233344444433221 222344556666666677777777777665423333333
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-ACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL-GACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~-~~~~~ 593 (710)
| .+..+.+..|.+.+|+++|-.+... .++ +..+| ..|..+|.++|+.+-|++++-++..+.+..+.-.+| +-|.+
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYK 473 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 3 4677888889999999999877542 222 33444 456788999999999999999987555565555555 66899
Q ss_pred cCChHHHHHHHHHHHhhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+.+--|.+++..+..++|.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 99988899999999999885
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.4e-12 Score=85.30 Aligned_cols=50 Identities=36% Similarity=0.693 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 238 RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 238 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-07 Score=90.00 Aligned_cols=393 Identities=13% Similarity=0.000 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCC-ChHHHHHHHHHH-HHcCCCCceehHHHHHHHH
Q 005174 209 LFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKG-LWKEAFQLFVEM-QEEGVEVNVITWNTIAGGC 285 (710)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~ 285 (710)
...-...+..|-..++-+.|.....+.+.. ...--|.|+.-+.+.| +..++.--+.+. ++.-+. . ..|.+.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~a--L----~~i~~l 170 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMA--L----QVIEAL 170 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchH--H----HHHHHH
Confidence 334445566777778888999988888764 3333444444333333 221222222222 111000 0 001111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc--cCChHHHHHHHHHHHh-hcCCCchhHHHHHHHHHHhcCCHH
Q 005174 286 LRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH--VGALKLGKEIHGSAVR-GCYGEYENVRNALITMYSRCKDLR 362 (710)
Q Consensus 286 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~--~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~ 362 (710)
.+.+ +..+..-=..|-...+.|...+....+.+++. .++...+.+.+-.+.. .-++.++....++.+.|...|+.+
T Consensus 171 l~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 171 LELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred HHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 1000 00001111122223344555555555554443 3343344444443333 345677788899999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005174 363 HAYILFKMTAEKSIITWNSM---LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439 (710)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (710)
+|...|++...-|+.+...| ...+.+.|+++....+...+.... +-+...|..-........+++.|..+-.+.++
T Consensus 250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998766554433332 334567888888888887776542 22223333333344456778888888888877
Q ss_pred hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 005174 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS--RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM 516 (710)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 516 (710)
.. +.+...+-.-...+...|++++|.-.|.... .| +..+|.-|+.+|...|++.+|..+-++..+. +..+..+.
T Consensus 329 ~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 329 SE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred cC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 65 4555555555677788999999999998765 33 7889999999999999999999888776653 44456666
Q ss_pred HHHH-HHhh-ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005174 517 VAVL-SACS-HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQ 592 (710)
Q Consensus 517 ~~ll-~a~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 592 (710)
..+. ..|. ....-++|..++++.. .+.|+ ....+.+...+.+.|..++++.++++. ...||...-+.|...++
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMR 482 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 6552 3332 2334578999998876 47899 788889999999999999999999987 46789999999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCC
Q 005174 593 IHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 593 ~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
..+.+.+|...+..++.++|++-
T Consensus 483 A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HhhhHHHHHHHHHHHHhcCccch
Confidence 99999999999999999999873
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-07 Score=95.12 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=106.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQ 592 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 592 (710)
|......+.+.+..++|...+.+... +.|- ...|......+...|..++|.+.|... ...| ++.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44555667888889999888877764 5665 667787888999999999999988876 3556 4667788888899
Q ss_pred hcCChHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 593 IHRNTGIGEW--AAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 593 ~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..|+...|.. .+..+++++|.+++.|..++.++.+.|+.++|.+.+........
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999888888 99999999999999999999999999999999999987765443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=83.51 Aligned_cols=50 Identities=44% Similarity=0.624 Sum_probs=46.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc
Q 005174 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH 525 (710)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 525 (710)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-07 Score=96.75 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=120.8
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-.+++...+
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33444444433333 3457999999999999999999988654 267789999999999999999999998887
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 541 SIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 541 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
++ .-+|.+ =+.||-+|++.+++.+-.+++. -||..-......-|...|.++.|+-.+. +...|..
T Consensus 1161 kk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred Hh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 76 556665 4578999999999999877765 3788888888888999999988776665 3455777
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 005174 621 IANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~ 640 (710)
|+..+...|.+..|..--++
T Consensus 1226 La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 88888888888777665433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-07 Score=92.06 Aligned_cols=217 Identities=13% Similarity=-0.008 Sum_probs=161.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
+.-.|+.-.|...|+..+.....++.. |..+...|....+.++....|....+.+ +.++.+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 445677888888888888765444332 6666777888888888888888888876 6667778888888888888999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 466 AKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 466 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
|..=|++...- ++..|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999887754 4556666666777788899999999988875 444566788888888888999999999988875
Q ss_pred hCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 543 YGIFPQ---------LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 543 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
+.|+ +-+..+++-.-.+ +++..|.+++++.. ..| ....+.+|...-.+.|+.++|.+.+++...+
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred --hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444 1222233322233 78888999988873 444 4567888888888889998888888887765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-07 Score=89.54 Aligned_cols=245 Identities=11% Similarity=0.124 Sum_probs=144.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH---HHHhccCchHH--HHHH------------HHHHHHhCCCC
Q 005174 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL---PLCARVANLQH--GKEF------------HCYILRRAMFN 444 (710)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~--a~~~------------~~~~~~~~~~~ 444 (710)
|.-.+...|+..+|..++...+... .+|........ .+...-.++-. .... ...+... -.
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk 306 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QK 306 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HH
Confidence 4445667788888888888887765 44442222211 12221111111 1111 1111111 01
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCh--HHHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD-EVTYTSLIAGYG--IQGEGRVALKLFEEMNKNQIKPDH--VTMVAV 519 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 519 (710)
.....-+.++.+|. +..+.+.++-....... ...+.+++.... +...+..|.+++...-+. .|+. ......
T Consensus 307 ~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 307 QAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHH
Confidence 11222344455544 44556666666655432 334444444332 223477888888877664 3443 344455
Q ss_pred HHHhhccCcHHHHHHHHH--------HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHH---
Q 005174 520 LSACSHSGLVVEGQKQFE--------RMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPTSAM--- 583 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~--- 583 (710)
+.-....|+++.|.+++. .+.+. +.. +.+..+++.+|.+.++.+-|..++.+.- ..+....
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 555678899999999998 44332 334 4456778888999888777777776541 1222233
Q ss_pred -HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 584 -WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 584 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
|.-+...-.++|+.+.|...++.+.+.+|++....++++-+|++..- +.|..+
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l 513 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESL 513 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHH
Confidence 33333444678999999999999999999999999999999998753 555554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-09 Score=95.03 Aligned_cols=265 Identities=12% Similarity=0.033 Sum_probs=183.8
Q ss_pred CCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC-CCCC--CchhhHHHHHHHccCChh
Q 005174 50 RGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG-LEKN--PVLVPKLVTFYASFSLYN 126 (710)
Q Consensus 50 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 126 (710)
+++.+.|..+|-+|.+..+..- .+...|.+-+.+.|..+.|..+|+-+.++. +.-+ ..+.-.|..-|-..|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~---e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETF---EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhh---HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 6788999999999987533322 377788888999999999999999988753 1111 133445677788899999
Q ss_pred HHHHhHhhCCCCCCc---cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc----cHHHHHHHHcccCCchHHHHHHH
Q 005174 127 NACFLVENSNIRYPL---PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNF----TYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 127 ~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
.|+.+|..+...+.. +...|+..|-...++++|+++-+++.+.+-++... -|--+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999987764433 46678999999999999999999998876554433 23333444455667777777777
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh----HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCce
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAV----SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNV 275 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 275 (710)
....-.+..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++...++..+.+. .++.
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~ 282 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGA 282 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCc
Confidence 766444445555556677778888888888888888766543 4666777888888888888888887663 3344
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 321 (710)
..-..+...-....-.+.|...+.+-... +|+...|..++....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 44445544444444555555555544433 566666666666543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=102.31 Aligned_cols=231 Identities=11% Similarity=0.088 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR 459 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 459 (710)
+.|..+|.+.|.+.+|...|+.-+.. .|-..||..+-.+|.+....+.|..++..-++. ++-++.....+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 34556666666666666666665554 344445555555555555555555555555544 34444444555555555
Q ss_pred cCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
.++.++|.++++...+. |+.+..++..+|.-.++++-|+.+|+++...|+. +...|+.+.-+|.-.+.+|.++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655432 4455555666677777777777777777777765 5666777776777777777766666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
++.... --.|+ + -..+|..|.......||+..|.+.++.++.-+|++.+
T Consensus 382 ~RAlst-at~~~------------------~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-ATQPG------------------Q------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-ccCcc------------------h------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 665542 11111 1 2345666666667789999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.++.|+-+-.+.|+.++|..++....+...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999888776443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=104.63 Aligned_cols=231 Identities=18% Similarity=0.180 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHh-----CCCCCch-HHHhHHhhhhhhcCChhHHHHHHhhcCC-------C--
Q 005174 412 VTIASILPLCARVANLQHGKEFHCYILRR-----AMFNEHL-LLWNSLVEMYARSGKVPEAKSVFDLMSR-------R-- 476 (710)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 476 (710)
.|...+...|...|+++.|..++...++. |...+.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777888888888888888777665 1112222 2334567788889999999888887752 1
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhC--C
Q 005174 477 --DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIK-PDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYG--I 545 (710)
Q Consensus 477 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~ 545 (710)
-..+++.|...|.+.|++++|...+++..+ .|.. |... .++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234778888889999999888887777554 1222 2222 456667778899999999999998876543 2
Q ss_pred CC---C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-
Q 005174 546 FP---Q-LEHFACMVDLYGRAGLLNKAKEIITKMP---------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET- 610 (710)
Q Consensus 546 ~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 610 (710)
.+ . ..+++.|..+|...|++++|.+++++.- ..+ ....++.|...|.+.++.+.|.+.+.....+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2 4679999999999999999999998771 122 2456778888999999988888888776654
Q ss_pred ---CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 611 ---RPEN---SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 611 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.|+. ..+|..|+.+|.+.|++++|.++.....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 5678999999999999999999977654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-06 Score=85.71 Aligned_cols=219 Identities=13% Similarity=0.091 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCC-CCCCchhhHHH
Q 005174 38 INLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGL-EKNPVLVPKLV 116 (710)
Q Consensus 38 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 116 (710)
..+.+-++-+..++++++|.....++...++.+.. .+-.-+-+....+.++.|..+ +...+. ..+.+.+ +=
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~---a~~cKvValIq~~ky~~ALk~---ikk~~~~~~~~~~~--fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED---AIRCKVVALIQLDKYEDALKL---IKKNGALLVINSFF--FE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh---hHhhhHhhhhhhhHHHHHHHH---HHhcchhhhcchhh--HH
Confidence 45566677788899999999999999887633322 455555566667777777633 333331 1111111 34
Q ss_pred HHHH--ccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH-cccCCchH
Q 005174 117 TFYA--SFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC-GEMMDVDF 193 (710)
Q Consensus 117 ~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~ 193 (710)
.+|+ +.++.++|.+.++...+.+......-.+.+-+.|++++|+.+|+.+.+++.. .+..-+++- ...+....
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 4454 7799999999999666666656667778889999999999999999876543 222222211 00000000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCChh----------HHHHHHHHHHhCCC
Q 005174 194 GRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM--------LERDAV----------SWNTMISAYASKGL 255 (710)
Q Consensus 194 a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~ 255 (710)
+. +......-...+-..+-.....+...|++.+|+++++.. ...|.. .--.|.-.+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11 111111111111222222344566778888888888776 111110 11123334556777
Q ss_pred hHHHHHHHHHHHHc
Q 005174 256 WKEAFQLFVEMQEE 269 (710)
Q Consensus 256 ~~~a~~~~~~m~~~ 269 (710)
.++|..++......
T Consensus 240 t~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHh
Confidence 77777777777665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-06 Score=86.65 Aligned_cols=450 Identities=11% Similarity=0.027 Sum_probs=234.6
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (710)
.+++...+.+.+.+.+. ..-...|....--.+...|+.++|....+....+-..+.++|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 45666666666666552 22122233322222344566666665555555555556667776666666667777777777
Q ss_pred hhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 005174 233 DKML--ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE-TYL 308 (710)
Q Consensus 233 ~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p 308 (710)
.... +| |...|.-+--.-++.|+++........+.+. .+.....|..+..++.-.|+...|..++++..+.. -.|
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 7663 23 5556666655566667777666666666553 22234566677777777777777777777776554 234
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch-hHHHHHHHH
Q 005174 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK--SI-ITWNSMLSG 385 (710)
Q Consensus 309 ~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~ 385 (710)
+...+.-..... --.....+.|.+++|.+.+...... |- ..--+....
T Consensus 178 s~~~~e~se~~L-----------------------------y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 178 SKEDYEHSELLL-----------------------------YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADL 228 (700)
T ss_pred CHHHHHHHHHHH-----------------------------HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHH
Confidence 433332211110 0111223445555555544433321 11 112223344
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-cc-CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA-RV-ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 463 (710)
+.+.++.++|..+++.++.. .||..-|.-.+..+. +. +..+....++......- +.....-..=+... ....+
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl-~~eel 303 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVL-NGEEL 303 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHh-Ccchh
Confidence 55666666666666666665 455555554444333 12 22222223333333221 10000000000000 00111
Q ss_pred hH-HHHHHhhcCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CC----------CCCChHH--HHHHHHHhhc
Q 005174 464 PE-AKSVFDLMSRR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQ----------IKPDHVT--MVAVLSACSH 525 (710)
Q Consensus 464 ~~-A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~p~~~t--~~~ll~a~~~ 525 (710)
.+ ..+++..+.++ =+..+..+...|-.....+-..++...+.. .| -+|.... +..+...+-+
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 11 11222222222 222333343333322222111111111111 11 1455443 4456667788
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.|+++.|..+++... +..|+ ++.|-.=..++...|.+++|..++++.. ..||...-.-...-..+.++.++|.+
T Consensus 384 ~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred cccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999887 46888 7788888889999999999999998874 33454443344444567788888988
Q ss_pred HHHHHHhhCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 603 AAEKLLETRPEN---------SGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 603 ~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
++.++-+-+.+- .+.-.-=+.+|.+.|+|.+|++=+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 888887654321 112223356788888888887754433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-05 Score=80.89 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.-.++|...+..+....+++...|..-..+|.+.|++.-|.+..+....
T Consensus 639 ~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~ 687 (700)
T KOG1156|consen 639 DPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEG 687 (700)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456688888888888899999999999999999999999988776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=100.24 Aligned_cols=213 Identities=15% Similarity=0.013 Sum_probs=153.6
Q ss_pred CchHHHHHHHHHHHHhCCCCCc--hHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEH--LLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+..+.+..-+..++......|+ ...|..+...|...|+.++|...|++..+ | +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666777777755423333 45677888889999999999999988764 2 67789999999999999999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--
Q 005174 500 LFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-- 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 576 (710)
.|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999987 4565 567777888888999999999999998864 6764322233334456788999999996642
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 577 YTPTSAMWATLLGACQIHRNTGIGEWAAEKLL-------ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 577 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..|+ .|.. .......|+...+ .+++.+. ++.|+.++.|..++.+|...|++++|...+++....++
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2233 2321 1222334555443 3444444 55667778999999999999999999999998876443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=96.53 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2223344444455555555555555555555543 334455666666666
Q ss_pred hcCChhHHHHHHhhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR-----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
..|++++|...|++..+. ....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777665431 23456666777777888888888888777642 223456666777777788888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.++++.... ...+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888877654 2223566667777777888888887776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-08 Score=106.79 Aligned_cols=243 Identities=10% Similarity=-0.005 Sum_probs=172.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 391 CAEESAFLFREMFRSGVEPNYV-TIASILPLCA---------RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++++++.. +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 356777788777765 44433 3333322222 2345788899999888875 66778888888899999
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999998764 3 4567888899999999999999999999884 45532 3333444566688999999999
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 537 ERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 537 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+++... ..|+ ...+..+..+|...|+.++|...++++. ..|+ ...++.+...+...|+ .+...++.+++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH
Confidence 998764 2465 5567788899999999999999999873 4454 3445555566666664 677778877765433
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 614 NSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 614 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 333344477777778887766655 666543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-06 Score=79.16 Aligned_cols=281 Identities=10% Similarity=-0.004 Sum_probs=198.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhH
Q 005174 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI-LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNS 452 (710)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 452 (710)
.|+.....+...+...|+.++|+..|++.+.. .|+..+-.-+ .-.+.+.|+++....+-..+.... +.....|-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhh
Confidence 47888889999999999999999999987654 4444331111 112346677777766666655432 223333333
Q ss_pred HhhhhhhcCChhHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCc
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSRRD---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGL 528 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 528 (710)
-.......++++.|+.+-++..+.| +..|-.-...+...|++++|.-.|+..+. +.| +-..|..|+.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 3444455678888888888777544 44444445678888999999999998876 454 56789999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHH-HHHH-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGIFPQLEHFACMV-DLYG-RAGLLNKAKEIITKM-PYTPTS-AMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
+.+|.-.-+..... +..+..+...+. ..+. .-..-++|.+++++. ...|+- ...+.+..-|...|..+.+...+
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 99988777766653 333455555442 3332 223457888988876 466764 35556667788889999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHH
Q 005174 605 EKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGL 684 (710)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l 684 (710)
+..+...||+ ..+..|++++...+.+.+|++.+.... ..+|+++....-|++|
T Consensus 462 e~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--------------------------r~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 462 EKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL--------------------------RQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH--------------------------hcCccchHHHHHHHHH
Confidence 9999988865 667899999999999999998877654 3677888888888888
Q ss_pred HHHHH
Q 005174 685 TELMK 689 (710)
Q Consensus 685 ~~~~~ 689 (710)
.++|+
T Consensus 515 EK~~~ 519 (564)
T KOG1174|consen 515 EKSDD 519 (564)
T ss_pred HhccC
Confidence 88876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-06 Score=89.34 Aligned_cols=546 Identities=12% Similarity=-0.000 Sum_probs=273.3
Q ss_pred HHHHHHHhcccCchHhHHHHHHHHHHhCCCCC-CchhhHHHHHHHccCChhHHHHhHhhCCC---CCCccHHHHHHHHHh
Q 005174 77 FAHIIFCCGKVKALAQGKQLHACAIALGLEKN-PVLVPKLVTFYASFSLYNNACFLVENSNI---RYPLPWNLLISLYVR 152 (710)
Q Consensus 77 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 152 (710)
+...+..|.+.. .+..++..+....+.++ ..+|..|...|....+...|.+.|++..+ .+..++......|++
T Consensus 462 ~~w~a~~~~rK~---~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 462 EFWVALGCMRKN---SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAE 538 (1238)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhc
Confidence 344445554432 33444444444444444 36788999999988899999999987554 456778899999999
Q ss_pred CCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRR-IRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRL 231 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (710)
..+++.|..+.-.--+.. ...-...|...--.+...++...+..-++...+--|.|...|..|..+|.++|++..|.++
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 999999998833322210 0001112222223356777777777777777777788999999999999999999999999
Q ss_pred HhhcCCCChhHHHH---HHHHHHhCCChHHHHHHHHHHHHc------CCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 232 FDKMLERDAVSWNT---MISAYASKGLWKEAFQLFVEMQEE------GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 232 ~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
|.+...-++.++.. ....-+..|.+.+|+..+...... +..--..++-.+...+.-.|-..++.++++.-.
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 98875433333222 223456789999999888776432 111123334444444444454555555555443
Q ss_pred h-------CCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCH---H---HHHHHHH
Q 005174 303 T-------QETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDL---R---HAYILFK 369 (710)
Q Consensus 303 ~-------~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~ 369 (710)
+ ....-+...+..+-.+|. ++.... .. .|+..+...|..-.-+.+.. | -+.+.+-
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~----------~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~ 766 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACY----------IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI 766 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHH----------HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh
Confidence 2 211122222222222221 111111 00 11111111111111111111 1 0111110
Q ss_pred hcC--CCChhHHHHHHHHHHh----cC----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005174 370 MTA--EKSIITWNSMLSGYTH----LD----CAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILR 439 (710)
Q Consensus 370 ~~~--~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 439 (710)
.-. ..+..+|..++..|.+ .+ +...|+..+++.++. ..|...+-..+......|++.-+...|-....
T Consensus 767 ~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 767 AHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred HHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhh
Confidence 000 0123445554444433 11 122455555554443 22333333333333444555554444444333
Q ss_pred hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHH-------------
Q 005174 440 RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEE------------- 503 (710)
Q Consensus 440 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~------------- 503 (710)
. .+.+..+|..+.-.+.+..+++.|...|.....- |.+.|--........|+.-++..+|..
T Consensus 845 s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 845 S--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred c--cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 3 3555566666666666666666666666655532 334443333333333444444444333
Q ss_pred --------------------------HHH---------CCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC
Q 005174 504 --------------------------MNK---------NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ 548 (710)
Q Consensus 504 --------------------------m~~---------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 548 (710)
+.. .|.+-+...|.......-+.+.+..|.....+...-...+-+
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 012223334444444444444455444444443321111222
Q ss_pred hhHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc---hHHHH
Q 005174 549 LEHFA----CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG---YYVLI 621 (710)
Q Consensus 549 ~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l 621 (710)
...|+ .+...++..|.++.|..-+...+...+..+-.+-+.. .-.|+++.+.+.+++++.+--++.. ....+
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 33333 2334444556666665555544433333333332222 3457788888888888887544332 23344
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 005174 622 ANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+.....++.-+.|....-+..
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHH
Confidence 445556666677766654443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-06 Score=84.94 Aligned_cols=407 Identities=12% Similarity=0.055 Sum_probs=255.4
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
..+.-|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++.......|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 44567889999999999999999999999998843 356689999999999999999999998875543335544444
Q ss_pred HHHH-HHH-hcCChHHHHHHHHHHHhC--C----CCCChhHHHHHHHHh--hccCC-------hHHHHHHHHHHHhhcCC
Q 005174 280 TIAG-GCL-RTGNFKGVLELLSRMRTQ--E----TYLDSVATVIGLGAC--SHVGA-------LKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 280 ~li~-~~~-~~g~~~~a~~~~~~m~~~--~----~~p~~~t~~~~l~~~--~~~~~-------~~~a~~i~~~~~~~~~~ 342 (710)
.++. .|. +.+.+++++++-.+.... + +.|-...+..+-... ..... ..++.+.++..++.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~- 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP- 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-
Confidence 4443 232 446788888877776652 1 222222221111111 11111 2334455555555542
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTA----EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l 417 (710)
.|+.+.-.+---|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+.....- |+ ......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhh
Confidence 333444445556788889999988877643 3477899999999999999999999988876541 11 0000000
Q ss_pred HHHHhccCchHHHHHH-------HH----------HHH----HhC-C-----CCCchHHHhHHhhhhhh---cCChhHHH
Q 005174 418 LPLCARVANLQHGKEF-------HC----------YIL----RRA-M-----FNEHLLLWNSLVEMYAR---SGKVPEAK 467 (710)
Q Consensus 418 l~~~~~~~~~~~a~~~-------~~----------~~~----~~~-~-----~~~~~~~~~~li~~~~~---~g~~~~A~ 467 (710)
+..-...++.+++... |+ +.. +.| . ......++..+...... .-..+...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 0000111222222211 11 110 000 0 00111222222211111 11111111
Q ss_pred HHHhhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 468 SVFDLMSRRD------EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 468 ~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
..+.....++ ...|......+.+.+..++|...+.+.... ..-....|......+...|..++|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al- 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL- 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-
Confidence 1111111222 224666777888889999998888887753 23345566666666778899999999998876
Q ss_pred HhCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 542 IYGIFPQ-LEHFACMVDLYGRAGLLNKAKE--IITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 542 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
-+.|+ +....++..++.+.|+..-|.. ++..+ ...| +...|..|...+.+.|+.+.|...+..+.++++.+|.
T Consensus 712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 47998 8899999999999998777776 77776 4445 7889999999999999999999999999999887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=106.98 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=164.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh---------hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcC
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA---------RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQG 492 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 492 (710)
++++.|...+++.++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 34678889999988864 445566666665544 234578999999987753 6778888889999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 570 (710)
++++|+..|++..+. .|+ ...+..+...+...|++++|...++++.+ +.|+ ...+..+...+...|++++|+.
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999985 455 55777788889999999999999999986 5777 3334445556777899999999
Q ss_pred HHHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 571 IITKMP--YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 571 ~~~~m~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+++.. ..|+ ...+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998873 2353 4456667777889999999999999998888888888888888888888 588887777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-05 Score=84.57 Aligned_cols=255 Identities=11% Similarity=0.130 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005174 359 KDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYIL 438 (710)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 438 (710)
+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+ .-|+..|.-+++.+.+.|.+++-..++..+.
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4455555555554443 3577788888888888877776643 2356677788888888888888777777776
Q ss_pred HhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----------------------CChhHHHHHHHHHHhcCChH
Q 005174 439 RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----------------------RDEVTYTSLIAGYGIQGEGR 495 (710)
Q Consensus 439 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~ 495 (710)
+.. -.|. +-+.||-+|++.+++.+-++++..--. .++.-|..|...+...|++.
T Consensus 1161 kk~-~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1161 KKV-REPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred Hhh-cCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 655 3443 346777788888877776665432110 13445666677777777777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.|.+.-++. .+..||.-+-.+|...+.+.-|. |... .+--..+-..-++.-|...|.++|-+.+++..
T Consensus 1238 ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1238 GAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 776654443 25668888888887766554432 2211 22233455677889999999999999888865
Q ss_pred C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-C-------CCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 576 P--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET-R-------PENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 576 ~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-------p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
- .+.-...|.-|.--|.+.+ .++-.+.++.+..- + .+....|.-++-+|.+-..||.|.-.
T Consensus 1306 LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2 1223334444444444432 33344444444321 1 12356788888888888888887543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-06 Score=84.97 Aligned_cols=253 Identities=14% Similarity=0.157 Sum_probs=133.5
Q ss_pred hcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 357 RCKDLRHAYILFKMTAEKSII--TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
....+.+|+.+++.+..+++. -|..+...|+..|+++.|.++|-+.- .+.-.|..|.+.|.++.|..+-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 334444555555544444332 23444445555555555555554321 1233344455555555544443
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-- 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-- 512 (710)
.+... .......|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+++.++- .|+
T Consensus 815 ~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l 881 (1636)
T KOG3616|consen 815 EECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHL 881 (1636)
T ss_pred HHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence 32211 222333444444444455555555555555554443 244555556655555555443 233
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-----HHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS-----AMWATL 587 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-----~~~~~l 587 (710)
..|...+..-+...|++..|+..|-+..+ |.+-+++|-..+.+++|.++-+.-.. .|. ..|..-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKS 950 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHh
Confidence 33556666677778888888877766532 67788899999999999888776531 121 222211
Q ss_pred H------HHHHhcCChHHHHHH------HHHHH-----hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 588 L------GACQIHRNTGIGEWA------AEKLL-----ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 588 ~------~~~~~~g~~~~a~~~------~~~~~-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+ ....++|-++.|... ++.+. .....-+..+..++.-+...|++++|.+-+-+..
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 122344444433321 11111 1123346778889999999999999977655443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-08 Score=100.66 Aligned_cols=235 Identities=17% Similarity=0.142 Sum_probs=154.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAEK----------SII-TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT 413 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 413 (710)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++..--
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~------- 271 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR------- 271 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-------
Confidence 344555777777777777777777654321 111 12234445555666666666666554310
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCC-CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC----------CCh-hHH
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR----------RDE-VTY 481 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~ 481 (710)
... .|. .+.-..+++.|..+|.+.|++++|...+++..+ +.+ ..+
T Consensus 272 ---------------------e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 272 ---------------------EEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred ---------------------HHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 000 010 111234455666667777777777666665431 122 245
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKN---QIKPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ- 548 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~- 548 (710)
+.++..+...+++++|..++++..+. -+.++ ..+++.+...|.+.|++++|+++|+++.+.. +..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777888889999999888876542 12333 3478889999999999999999999987653 22333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM--------PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
...++.|...|.+.+++++|.++|.+. +..|+ ..+|..|...|...|+++.|.+..+.+..
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 456788999999999999999888875 23444 45788999999999999999998887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=92.69 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=189.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhcc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIAS-ILPLCARV 424 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~ 424 (710)
-+.+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..++..|+.+|.+-.+. .|-.+||.. +.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36788999999999999999987654 57789999999999999999999999998875 677777755 44577788
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
++.+.+.++++.+.+.. +.++....++...|.-.++++.|...+.++.+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999985 66777778888899999999999999998775 47889999999999999999999999
Q ss_pred HHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 502 EEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 502 ~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
++....--.|+. ..|-.+.......|++..|.+.|+..... .|+ .+.++.|.-.-.+.|++++|..+++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 998876555653 35777777778889999999999988753 555 8889999999999999999999998774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.6e-06 Score=85.09 Aligned_cols=408 Identities=15% Similarity=0.081 Sum_probs=231.5
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHH-h-----
Q 005174 217 SMYGKFGQVDVARRLFDKMLE--RDAV-SWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL-R----- 287 (710)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~----- 287 (710)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344667777777777766533 2433 34445566777777788888887777753 44444444443333 1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI 366 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 366 (710)
..+.+...++|+++...- |.......+.-.+.....+ ..+.......++.|+| .+++.|-..|....+.+-...
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 124566677777776553 2222211111111111111 2344444555555543 345555555655444444444
Q ss_pred HHHhcC------------------CCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccC
Q 005174 367 LFKMTA------------------EKSII--TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVA 425 (710)
Q Consensus 367 ~~~~~~------------------~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 425 (710)
++.... .|... ++.-+...|...|++++|++++++.+++ .|+ ...|..-...+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 443321 12222 3455677788999999999999999887 566 456777777889999
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh----------hHH--HHHHHHHHhcCC
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE----------VTY--TSLIAGYGIQGE 493 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~ 493 (710)
++.+|.+..+...... ..|..+-+..+..+.++|++++|.+++....+.+. ..| .....+|.+.|+
T Consensus 243 ~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998875 67778888888899999999999999998876642 133 234678889999
Q ss_pred hHHHHHHHHHHHHC--CC---CCC----------hHHHHHHHHHhhccCc-------HHHHHHHHHHHHHHhCCCCCh--
Q 005174 494 GRVALKLFEEMNKN--QI---KPD----------HVTMVAVLSACSHSGL-------VVEGQKQFERMTSIYGIFPQL-- 549 (710)
Q Consensus 494 ~~~A~~~~~~m~~~--g~---~p~----------~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p~~-- 549 (710)
+..|++-|....+. .+ +-| ..+|..++...-+... ...|.+++-.+..........
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 99888877665532 11 122 2233333332221111 122334443333220000000
Q ss_pred ---------hHHHHHHHHH---HhcCCHHHHHHHHHh-----------C----C--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 550 ---------EHFACMVDLY---GRAGLLNKAKEIITK-----------M----P--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 550 ---------~~~~~li~~~---~~~g~~~~A~~~~~~-----------m----~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
.-...+-.-. .+...-+++...-.+ . + ..||+.- ..|+ ....=++.|
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A 476 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEA 476 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHH
Confidence 0000111000 111111112111100 0 1 1122211 1122 223456678
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.+.++-+.+..|++..+|..--++|.+.|++--|.+.++
T Consensus 477 ~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 477 MKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred HHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 888888999999999999999999999999988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-05 Score=73.07 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=131.8
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCC-------hHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGE-------GRVAL 498 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 498 (710)
+-+.|.+++--+++. . +...-.|+--|.+.+++.+|..+.+++.-.++.-|-.-.-.++..|+ ..-|.
T Consensus 269 ngEgALqVLP~L~~~---I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH---I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CCccHHHhchHHHhh---C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 345566665544443 2 23345677789999999999999888765444433322222333333 45566
Q ss_pred HHHHHHHHCCCCCChHH-HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 499 KLFEEMNKNQIKPDHVT-MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
+.|+-.-+.+..-|... --++.+++.-...+++...++..+..- +.-|...--.+..+++..|++.+|+++|-++.
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC
Confidence 66665555554444321 223334444455788999998888763 33333333458899999999999999998885
Q ss_pred -CCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhhCCC-C-CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 577 -YTPTSAMWATLLGA-CQIHRNTGIGEWAAEKLLETRPE-N-SGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 577 -~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.-.|..+|.+++.- |.+.|.. .-+++.+++.+.. + -.....+++.+.++|.+=-|.+.++.+....+
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP---~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKP---QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCc---hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 22467777776655 5566775 4456777776532 2 23344567777788888778888887765444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-08 Score=85.43 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
+...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455778899999999999999999985 454 55888888889999999999999999985 5787 889999999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 558 LYGRAGLLNKAKEIITKMPYTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
.+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.....+++.+.+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998843343 45788887778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 005174 634 LAKVRTCMRDLGV 646 (710)
Q Consensus 634 A~~~~~~m~~~~~ 646 (710)
|.-+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999888776544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-07 Score=91.50 Aligned_cols=232 Identities=9% Similarity=-0.062 Sum_probs=154.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH
Q 005174 390 DCAEESAFLFREMFRSG-VEPN--YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466 (710)
Q Consensus 390 g~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 466 (710)
+..+.++..+.+++... ..|+ ...|......+...|+.+.|...+...++.. +.+...|+.+...|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44556666666666432 1222 2334455556677777777777777777764 56678888999999999999999
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh
Q 005174 467 KSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY 543 (710)
Q Consensus 467 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 543 (710)
...|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 999988764 3 4667888888899999999999999998874 555432222222234567899999999776542
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC-CC
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNK--AKEIITKM-PYT----P-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP-EN 614 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~ 614 (710)
..|+... ..++.. ..|+..+ +.+.+.+- ... | ....|..+...+...|+.+.|...++++++.+| +.
T Consensus 195 -~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3444322 233333 3444433 33333321 111 1 345788899999999999999999999999997 55
Q ss_pred CchHHHHHHHHHhcCC
Q 005174 615 SGYYVLIANMYAATGC 630 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~ 630 (710)
.++-..++.+....++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666666665555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00011 Score=75.89 Aligned_cols=192 Identities=14% Similarity=0.101 Sum_probs=114.0
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHH
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEA 159 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 159 (710)
.+.+..+.+.+.+|..+.+.+.... ....-|..+.+.|+..|+++.|+++|.+.. .++--|..|.++|++..|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444445566777777776665543 223446677788888888888888887632 356678888888888888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C
Q 005174 160 LCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-R 238 (710)
Q Consensus 160 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~ 238 (710)
.++-.+.. |.......|..-..-.-..|.+.+|++++-.+. .|+ ..|.+|-+.|..+..+++.++-.. .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 88766543 333344445444444556666766666654331 222 345677777777777777766522 1
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLEL 297 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 297 (710)
-..|...+..-+-..|+...|..-|-+.. -|.+-++.|-..+.|++|.++
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 22344555556666677766666654432 233444445555555554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-06 Score=76.79 Aligned_cols=196 Identities=14% Similarity=0.097 Sum_probs=114.6
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh---cCCCChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL---MSRRDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|+...++.....+++- .+.+...+..-..+|...|.+..|..=+.. +.+.+...+--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 33455566666666666655 367777777778888888888888665543 3445666666777778888888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
+...++.++ +.||....-.. | ..+....+.++.|.+ ..+.+++-++++-.+.. .
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHh
Confidence 888888776 56775422111 1 112222222333322 12233333443333322 2
Q ss_pred CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|. ...+..+-..++..+++.+|.+.+..++.++|+|..++...+.+|.-...+|+|+.-++...+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 2222 123334444555666676777777777777777777777777777766677777666665544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-06 Score=90.12 Aligned_cols=281 Identities=12% Similarity=0.072 Sum_probs=184.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----c--
Q 005174 353 TMYSRCKDLRHAYILFKMTAEK--SII-TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----R-- 423 (710)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 423 (710)
..+...|++++|.+.++.-... |.. ........+.+.|+.++|..+|+.++.. .|+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456778888888888765442 433 3445567788888888898888888887 466666666555544 1
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh-HHHHHHhhcCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP-EAKSVFDLMSRRDE-VTYTSLIAGYGIQGEGRVALKLF 501 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 501 (710)
..+.+...++++.+...- |.......+.-.+.....+. .+...+..+.++.+ .+|+.+-..|....+..-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 124566677777766553 22111212211111212222 23334444445544 45666666666555555555666
Q ss_pred HHHHHC----C----------CCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 005174 502 EEMNKN----Q----------IKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL 564 (710)
Q Consensus 502 ~~m~~~----g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 564 (710)
...... + -.|... ++.-+...|.+.|++++|.+++++.++ ..|+ ++.|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCC
Confidence 655432 1 123332 344456667889999999999999886 4888 8899999999999999
Q ss_pred HHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC--CC-------CchHHHHHHHHHhcCCchH
Q 005174 565 LNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP--EN-------SGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 565 ~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~ 633 (710)
+++|.+.++... .. -|...-+-....+.+.|+++.|+..+..+..-+- .. .+...-.+.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999998874 22 3555555566777889999999999999976552 21 2334567888999999999
Q ss_pred HHHHHHHH
Q 005174 634 LAKVRTCM 641 (710)
Q Consensus 634 A~~~~~~m 641 (710)
|++-+..+
T Consensus 324 ALk~~~~v 331 (517)
T PF12569_consen 324 ALKRFHAV 331 (517)
T ss_pred HHHHHHHH
Confidence 99876655
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-05 Score=83.88 Aligned_cols=239 Identities=11% Similarity=0.060 Sum_probs=132.3
Q ss_pred CCCchhhHHH--HHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhC-C-------CCCCcc
Q 005174 107 KNPVLVPKLV--TFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR-R-------IRGDNF 176 (710)
Q Consensus 107 ~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~-g-------~~p~~~ 176 (710)
.|..+--.++ +.|...|+.+.|.+-.+-+. .-..|..|.+.|++.++.+-|.-.+..|... | .+-+..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 3444545554 34667789998877766553 3346999999999999999888888777532 2 111112
Q ss_pred cHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCC
Q 005174 177 TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLER-DAVSWNTMISAYASKGL 255 (710)
Q Consensus 177 t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~ 255 (710)
+-..+.-.....|.+++|+.+|++.+ -|..|=..|-..|.+++|.++-+.--.- =..||......+-..++
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 22223333456777888888887764 2334445566778888888876543221 12355555555666677
Q ss_pred hHHHHHHHHHHH----------HcCC---------CCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 256 WKEAFQLFVEMQ----------EEGV---------EVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 256 ~~~a~~~~~~m~----------~~g~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
.+.|++.|++-. ...+ ..|...|.-...-+-..|+.+.|+.+|...++ |.++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 777777776531 1100 11222233333333344555555555555443 2333
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (710)
.+..+-.|..++|.+|-++ ..|....-.|.+.|-..|++.+|..+|.+
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444444555555544332 12223333455555555666666555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-06 Score=77.16 Aligned_cols=192 Identities=12% Similarity=0.045 Sum_probs=128.6
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 496 (710)
.|...|+...|+.-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+ .+-...|....-+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 3344444444444444444442 44455566666666666666666666665442 245566667777777788888
Q ss_pred HHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 497 ALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
|...|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+ ....-.+.+...+.|++-.|..+++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 8888888776433332 44777777777788888888888888775 4666 66777888888888888888888877
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 575 MP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 575 m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.. ..++..++...|......||.+.+-+.-.++....|...+
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 63 3466666666677777888888777777777777776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-05 Score=77.96 Aligned_cols=214 Identities=15% Similarity=0.102 Sum_probs=118.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCC---hh-------HHHHH
Q 005174 415 ASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRD---EV-------TYTSL 484 (710)
Q Consensus 415 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-------~~~~l 484 (710)
..+.++..+..+++.+.+.+...+... .++.-++....+|...|........-+...+.. .. .+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555432 334444445555555555544444433332221 01 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAG 563 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g 563 (710)
..+|.+.++++.|+..|++.......||.. .+....+++........ -+.|.. .-...=.+.+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 445666677777777777766544443321 12223333333333322 244542 12222256666777
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 564 LLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 564 ~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
++.+|+..++++. ..| |...|.....+|.+.|++..|..-++..++++|+....|..-+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777762 234 55666666666777777777777777777777777777777777777777777777776665
Q ss_pred Hh
Q 005174 642 RD 643 (710)
Q Consensus 642 ~~ 643 (710)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 43
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-05 Score=80.31 Aligned_cols=461 Identities=12% Similarity=0.020 Sum_probs=266.3
Q ss_pred hhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHH
Q 005174 125 YNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCI 201 (710)
Q Consensus 125 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 201 (710)
...|...|=+..+.|+ ..|..|-..|....+...|...|+...+.+- -|......+...|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 5566666554444444 4599999999888899999999999876432 25557788889999999999998882222
Q ss_pred HhcCCCh--HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 202 DACHEWS--LFVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 202 ~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
-..-+.- ..-|....-.|.+.++...|..-|+...+ .|...|..+..+|...|++..|+++|.+... +.|+ .
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-S 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-h
Confidence 1221111 22333355568889999999999998854 3777899999999999999999999988865 5555 3
Q ss_pred hHHHH--HHHHHhcCChHHHHHHHHHHHhC------CCCCChhHHHHHHHHhhccCCh-------HHHHHHHHHHHhhcC
Q 005174 277 TWNTI--AGGCLRTGNFKGVLELLSRMRTQ------ETYLDSVATVIGLGACSHVGAL-------KLGKEIHGSAVRGCY 341 (710)
Q Consensus 277 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~~l~~~~~~~~~-------~~a~~i~~~~~~~~~ 341 (710)
+|... ....+..|.+.+++..+...... +..--..++......+...|-. +...+.+...+.+..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 33332 23457789999999998877543 1111123333333333333433 334444444444433
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHH-HHhcCCh---H---HHHHHHHHHHHcCCCCcHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSII--TWNSMLSG-YTHLDCA---E---ESAFLFREMFRSGVEPNYV 412 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~a~~~~~~m~~~g~~p~~~ 412 (710)
..+...|-.+ ..|..+|-... ++.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..
T Consensus 710 ~~~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~ 776 (1238)
T KOG1127|consen 710 QSDRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMY 776 (1238)
T ss_pred hhhHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhccc
Confidence 3333333333 23344444444 3321 11111111 2222221 1 11111111111 112233
Q ss_pred HHHHHHHHHhc-------cC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHH
Q 005174 413 TIASILPLCAR-------VA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTY 481 (710)
Q Consensus 413 t~~~ll~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 481 (710)
++..+...+.+ .+ +...|...+...++.. ..+...||+|.-. ...|++.-|...|-.-. ..+..+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhe
Confidence 33333322221 22 2346677777777753 5667778887766 66688888888886544 3367789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHH---HHhCCCCChhHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMT---SIYGIFPQLEHFACMVD 557 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~p~~~~~~~li~ 557 (710)
..+...+.+..+++-|...|...+. +.|+ ...|...-......|+.-+...+|..-. ...|-.|+..-|-+...
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 9999999999999999999998876 3443 4455444433445566666666665511 11144455444555555
Q ss_pred HHHhcCCHHHHHHHHHhCC-----------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP-----------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
.-...|+.++-+.-.++++ ..| +...|.......-..+.++.+.....++
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5555666555444444432 123 3344544444444444444454444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=90.98 Aligned_cols=220 Identities=14% Similarity=0.098 Sum_probs=166.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALK 499 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 499 (710)
+.|++..|.-.|+..++.. |.+...|..|...-+..++-..|...+.+..+- |....-.|.-.|...|.-.+|++
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4555666666666666654 666777777777777777777777777776643 56677777788888888889999
Q ss_pred HHHHHHHCCCC--------CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005174 500 LFEEMNKNQIK--------PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571 (710)
Q Consensus 500 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 571 (710)
.++..+....+ ++..+-.. ..+.....+....++|-.+....+.++|.++..+|.-.|--.|.+++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887653211 00000000 122233345556666766666556667888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 572 ITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 572 ~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
|+.. ..+| |...||.|....+...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-....+.-
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9987 4566 7889999999999999999999999999999999999999999999999999999998876655433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-05 Score=79.20 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=99.7
Q ss_pred hccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 005174 321 SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS-IITWNSMLSGYTHLDCAEESAFLF 399 (710)
Q Consensus 321 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 399 (710)
...|.+++|+.++....+. ..|=..|...|.+++|.++-+.-..-. -.+|.....-+-..++.+.|++.|
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3456666666666655543 234445566666666666554321111 124444444444455555555555
Q ss_pred HHHH----------HcC---------CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 400 REMF----------RSG---------VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 400 ~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
++.. ... -.-|...|...-..+...|+.+.|..+|..... |-+++...|-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeec
Confidence 4321 110 123444555666666777888888888776554 56777788888
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
|+.++|-++-++- .|....-.+.+.|-..|++.+|..+|.+.+
T Consensus 952 Gk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888876653 356666678888888888889988888765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0021 Score=75.23 Aligned_cols=259 Identities=9% Similarity=-0.064 Sum_probs=121.6
Q ss_pred hHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--C-C----cccHHHHHHHHccc----CCchHH
Q 005174 126 NNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIR--G-D----NFTYPSVLKACGEM----MDVDFG 194 (710)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----~~~~~a 194 (710)
++..+++....--+.++ -.+...... .+.+.++++...+.|+- | + -+.|+-+++.+... .+.+..
T Consensus 265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~ 340 (903)
T PRK04841 265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL 340 (903)
T ss_pred HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence 34445554443333333 233333332 33456677777776641 1 1 25567776665432 122223
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 005174 195 RVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS--WNTMISAYASKGLWKEAFQLFVEMQEEGVE 272 (710)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 272 (710)
..+| ......+...|++.+|..........+... ...........|+++.+..++..+......
T Consensus 341 ~~lh--------------~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~ 406 (903)
T PRK04841 341 PELH--------------RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLL 406 (903)
T ss_pred HHHH--------------HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHh
Confidence 3333 333445667788887777666664432211 111223345567777777777665322122
Q ss_pred CceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CChhH--HHHHHHHhhccCChHHHHHHHHHHHhhcCCCc
Q 005174 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY------LDSVA--TVIGLGACSHVGALKLGKEIHGSAVRGCYGEY 344 (710)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------p~~~t--~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~ 344 (710)
.+..........+...|+++++..++......--. +.... ....-..+...|+++.+...+......-...+
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 486 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW 486 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 22333344455566788899988888876543110 11111 11111223345666666666655544211111
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 345 E----NVRNALITMYSRCKDLRHAYILFKMTAE-------KS--IITWNSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 345 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 402 (710)
. ...+.+...+...|++++|...+++... +. ..++..+...+...|++++|...+++.
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1 1223334444555555555555544321 00 112233334444555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-05 Score=71.27 Aligned_cols=309 Identities=14% Similarity=0.059 Sum_probs=167.2
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCC---ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYP---LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSV-LKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~ 187 (710)
+++.+..+.+..++++|++++....++++ ...+.+-.+|-+..++..|-..|+++-.. .|...-|..- ...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 34444445555666666666655443333 23455555666666666666666666542 2333322111 111223
Q ss_pred cCCchHHHHHHHHHHhcCCChHHHHHH--HHHHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChHHHHHHHH
Q 005174 188 MMDVDFGRVVHSCIDACHEWSLFVHNA--LVSMYGKFGQVDVARRLFDKML-ERDAVSWNTMISAYASKGLWKEAFQLFV 264 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~ 264 (710)
.+.+..|..+..++... ++...-.. -.......+|+..+..+.++.+ +.+..+-+.......+.|+++.|++-|+
T Consensus 91 A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred hcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 34444455444444311 11111111 1112335688888999999988 4566666666666778999999999999
Q ss_pred HHHHc-CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHH-hhccCChHHHHHHHHHHHhhcCC
Q 005174 265 EMQEE-GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGA-CSHVGALKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 265 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~-~~~~~~~~~a~~i~~~~~~~~~~ 342 (710)
...+- |..| ...||.-+ ++.+.|+++.|++...++.++|++-.... ++-+.. -.....+..-..++...
T Consensus 169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-gIGm~tegiDvrsvgNt~~lh~Sa------ 239 (459)
T KOG4340|consen 169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-GIGMTTEGIDVRSVGNTLVLHQSA------ 239 (459)
T ss_pred HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-CccceeccCchhcccchHHHHHHH------
Confidence 87664 5554 46676544 55677899999999999988886422110 000000 00000000000111100
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEK-----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 417 (710)
-...+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-.- -.+++.+..+-+.-+.+... -...||..+
T Consensus 240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 0112233344566788899999988888865 556655543222 23444444444454554432 334677778
Q ss_pred HHHHhccCchHHHHHHHHH
Q 005174 418 LPLCARVANLQHGKEFHCY 436 (710)
Q Consensus 418 l~~~~~~~~~~~a~~~~~~ 436 (710)
+-.||+..-++.|-.++.+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 8788887777777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00011 Score=73.75 Aligned_cols=239 Identities=16% Similarity=0.072 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
..|.++.-+..+++.|.+-+....+ .++.-++..-.+|...|.+.++...-....+.|-. ...-|+.+-.++
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~----- 301 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKAL----- 301 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHH-----
Confidence 3455556666667776666665433 23334555666777777777766666655544411 111111111111
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
..+..+|.+.++++.|...|++...+... -....+....+++++..+...-
T Consensus 302 ------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 302 ------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY 352 (539)
T ss_pred ------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 11334555666677777766664322110 1112233344555555444433
Q ss_pred CCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH
Q 005174 507 NQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-SA 582 (710)
Q Consensus 507 ~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~ 582 (710)
+.|... -...-...+.+.|++..|...|.+++.. .|+ ...|..-.-+|.+.|.+.+|++-.+... ..|+ ..
T Consensus 353 --~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 353 --INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred --hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 233321 1222245566778888888888887764 465 6777888888888888887777655542 3332 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
.|.-=..++....+++.|.++++..++.+|++.+.-..+..++..
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 444444455566778888888888888888877766666666554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-06 Score=83.46 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=98.6
Q ss_pred HhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc----cCc
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----SGL 528 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 528 (710)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 334566677777777777654 45566666777888888888888888888763 333 333334443322 235
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNT-GIGEWAAE 605 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~ 605 (710)
+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+. ...| +..++-.++..+...|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77888888887653 4466777778888888888888888877765 2233 455666666666666665 55667777
Q ss_pred HHHhhCCCC
Q 005174 606 KLLETRPEN 614 (710)
Q Consensus 606 ~~~~~~p~~ 614 (710)
++....|+.
T Consensus 261 qL~~~~p~h 269 (290)
T PF04733_consen 261 QLKQSNPNH 269 (290)
T ss_dssp HCHHHTTTS
T ss_pred HHHHhCCCC
Confidence 777777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.4e-05 Score=75.95 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=144.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHH---HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNY-VTIAS---ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...|++++|...+++..+. .|+. ..+.. ........+....+.+.+.. .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 455667788888877777665 2333 22221 11111123344444444433 1111233334445556677788
Q ss_pred CChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHhhccCcHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPDH--VTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 534 (710)
|++++|...+++..+. +...+..+...|...|++++|+.++++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888876642 455677777888888888888888888776421 1222 234456667778888888888
Q ss_pred HHHHHHHHhCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 005174 535 QFERMTSIYGIFPQLEHF-A--CMVDLYGRAGLLNKAKEI---ITKM-PYTPT---SAMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
++++........+..... + .+...+...|..+.+.+. .... +..|. .........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888875321111111111 1 223333334432222222 1111 11011 122224555667778888888877
Q ss_pred HHHHhhCC---------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 605 EKLLETRP---------ENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 605 ~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+.+....- .......+.+.++.+.|++++|.+.+......+
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77654321 124556777888889999999999988776544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-08 Score=59.43 Aligned_cols=34 Identities=32% Similarity=0.654 Sum_probs=25.7
Q ss_pred cCCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 269 EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 269 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
+|+.||..|||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677777777777777777777777777777763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-06 Score=80.29 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=141.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhccCc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTI-ASILPLCARVAN 426 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~ 426 (710)
...+.++|...|+.+.+..-...-..+.......+...+...++-+.++.-+++....+..++..++ ......+...|+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~ 117 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD 117 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC
Confidence 3455667777787776655554444455555544443333334455565555555444433233233 223345667888
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCCh-hHHHHHHHH----HHhcCChHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDE-VTYTSLIAG----YGIQGEGRVALKLF 501 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~----~~~~g~~~~A~~~~ 501 (710)
++.|.+++... .+.......+..|.+.++++.|.+.++.|.+.+. .+...+..+ +...+.+.+|..+|
T Consensus 118 ~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 118 YEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 99888876531 3466667788999999999999999999986522 223333333 33345799999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 005174 502 EEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLL-NKAKEIITKMP 576 (710)
Q Consensus 502 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 576 (710)
+++.+. ..++..+.+.+..++...|++++|..++.+... ..|+ ..+...++-+..-.|+. +.+.+++.++.
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 998764 567888899999999999999999999988764 4566 77888888888888887 67778888874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-06 Score=77.88 Aligned_cols=179 Identities=12% Similarity=0.042 Sum_probs=107.1
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----H
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DE---VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV----T 515 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t 515 (710)
....+..+...|.+.|++++|...|+++... +. ..+..+..+|...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666666667777776666655432 11 24555666666666777777777666653 22211 2
Q ss_pred HHHHHHHhhcc--------CcHHHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 005174 516 MVAVLSACSHS--------GLVVEGQKQFERMTSIYGIFPQL-EHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWAT 586 (710)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 586 (710)
+..+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33333334332 5566666666666543 3442 12211111100 00000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+...+...|+++.|...++.+++..|++ +..+..++.+|...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566788899999999999999997765 478999999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=72.39 Aligned_cols=176 Identities=16% Similarity=0.156 Sum_probs=104.8
Q ss_pred CChhHHHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHhhccCcHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 461 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (710)
+++..+..+.+... +.+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.|+++.|.++..+
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISE 203 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHH
Confidence 44444444554444 233334444444444555555555555555442 3332 334443332 2234555555555555
Q ss_pred HHHHhCCCC-------------C--------h-------hHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHH
Q 005174 539 MTSIYGIFP-------------Q--------L-------EHFACMVDLYGRAGLLNKAKEIITKMP----YTPTSAMWAT 586 (710)
Q Consensus 539 ~~~~~~~~p-------------~--------~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ 586 (710)
+.++ |++. | . ..+|.-.-.+.+.|+.+.|.+.+..|| ...|+++...
T Consensus 204 IieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN 282 (459)
T KOG4340|consen 204 IIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN 282 (459)
T ss_pred HHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence 5443 3221 1 1 123333345568899999999999996 3457777765
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+.-. -..+++..+.+-+.-+++++|--++++..+.-+||+..-++-|..++.+
T Consensus 283 ~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 283 QALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 5322 1245555577788888999998889999999999999999999888543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-06 Score=74.27 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=111.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG 563 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 563 (710)
+..|...|+++.+....+.+.. |. . .+...++.+++...++..... .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 4567777887776544433321 11 0 122356677777777777653 666 888999999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 564 LLNKAKEIITKM-PYTP-TSAMWATLLGA-CQIHRN--TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 564 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++++|...+++. ...| +...+..+..+ +...|+ .+.|.+.++++++.+|+++..+..++..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887 3344 67777777776 466676 589999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 005174 639 TCMRDLGV 646 (710)
Q Consensus 639 ~~m~~~~~ 646 (710)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99876444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=57.74 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=25.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777773
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00023 Score=73.08 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHhHHhCC-CCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh--
Q 005174 37 RINLLETLKDFAGRGNLSKAFEAFTRIRITAA-SHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP-- 113 (710)
Q Consensus 37 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 113 (710)
...+..+...+...|+.+++...+........ .++.. .........+...|+++.+...++.+++.. +.+..++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATER-ERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 44555666677778888888777777655433 22221 112222333456789999999999988774 44444443
Q ss_pred -HHHHHHHccCChhHHHHhHhhCCCCCCcc---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccC
Q 005174 114 -KLVTFYASFSLYNNACFLVENSNIRYPLP---WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM 189 (710)
Q Consensus 114 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 189 (710)
.+.......+....+.+.++.....++.. +..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22222233566677777776533333332 3334467888999999999999998753 223456677777888899
Q ss_pred CchHHHHHHHHHHhcC--CChH--HHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hHHH------HHHHHHHhCCChH
Q 005174 190 DVDFGRVVHSCIDACH--EWSL--FVHNALVSMYGKFGQVDVARRLFDKMLERDA--VSWN------TMISAYASKGLWK 257 (710)
Q Consensus 190 ~~~~a~~~~~~~~~g~--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~ 257 (710)
++++|...++...... .++. ..|..+...+...|++++|..+|++...+.. ..+. .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999998888777322 2332 3455778888899999999999988743211 1111 2233333344333
Q ss_pred HHHHH--HHHHHHcCCCCceehHH--HHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 258 EAFQL--FVEMQEEGVEVNVITWN--TIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 258 ~a~~~--~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
.+.++ +..............++ ....++...|+.+.|..+++.+...
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33332 21111111111112222 4455667778888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=72.87 Aligned_cols=122 Identities=8% Similarity=0.042 Sum_probs=88.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.|+ ...|..+..++.+.|++++|...|++.-
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555554 34543 44456667778888888888888764 4665 7777888888888888888888888772
Q ss_pred CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 577 YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 577 ~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
.. .+...|..+..++...|+.++|...++.++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 23 3667777777888888888888888888888888888888777766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=82.57 Aligned_cols=210 Identities=13% Similarity=0.061 Sum_probs=128.7
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--CChhHHHHHHHHHHhcCChHH
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 496 (710)
..+...|-...|..++.++. .|...+.+|...|+..+|..+...-.+ +|...|..+.+.....--+++
T Consensus 406 ell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence 34444455555555554432 244555566666666666555543332 355555555555555555555
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 497 ALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 497 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
|.++++..... .-..+..-..+.++++++.+.|+.-.+ +.|- ..+|..+.-+..++++++.|.+.|...
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 65555543221 111111112235667777776666543 4554 566777777777888888887777665
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcC
Q 005174 576 -PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRK 648 (710)
Q Consensus 576 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 648 (710)
...| +...||.+-.+|.+.|+-.+|...++.+++-+-++...|-...-+..+.|.|++|.+.+.++.+...++
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 3445 466788888888888888888888888887777777777777777778888888888888777655433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.2e-06 Score=70.96 Aligned_cols=105 Identities=8% Similarity=-0.109 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 534 KQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
.++++..+ +.|+. +..+...+...|++++|...|+..- .. .+...|..+..++...|+++.|...++.+++++
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45565553 46663 5567888999999999999999873 33 478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|+++..+..++.+|...|++++|.+.+.....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=86.95 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=146.9
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HV 514 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 514 (710)
|.+...|-..|......+++++|++++++.... -.-.|.++++.-...|.-+...++|++..+. -| -.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 555667777777777888888888888776532 2346777777777777777788888888763 23 34
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLLGA 590 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~ 590 (710)
.|..|..-|.+.+.+++|-++++.|.++++ .....|..+++.+.+..+-++|..++.+. ..-|. .....-.+.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 577777788888888888888888888765 45667888888888888888888888765 22232 3333444455
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
-.++||.+.|+.+++-++.-.|.....|..+++.-.+.|..+.++.++++...+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 56788888888888888888888888888888888888888888888888877665
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00023 Score=83.23 Aligned_cols=296 Identities=11% Similarity=0.015 Sum_probs=172.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CC------h--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH----HH
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAE----KS------I--ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY----VT 413 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~----~~------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t 413 (710)
.....+...|++++|...+..... .+ . .....+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344445567788887777764321 11 1 11112233455678888888888877653111121 22
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----------Ch
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----------DE 478 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~ 478 (710)
...+...+...|+++.|...+........ ..........+...+...|++++|...+++.... ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 33344455677888888888777664321 1111234455666777888888888877654321 11
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH--
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF-- 552 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-- 552 (710)
..+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.++|...+........-......+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 23444555666778888888888876552 11122 2233344555667888888888887775431111111111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------CCCch
Q 005174 553 ---ACMVDLYGRAGLLNKAKEIITKMPYT--PTS----AMWATLLGACQIHRNTGIGEWAAEKLLETRP------ENSGY 617 (710)
Q Consensus 553 ---~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~ 617 (710)
...+..+...|+.+.|.+.+...... ... ..+..+..++...|+.+.|...++.+.+... +....
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11224445678888888888766311 111 1133455667778888888888888776521 22346
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 618 YVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
+..++.+|.+.|+.++|.+.+.+..+..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7778888889999888888887776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0034 Score=67.21 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=96.7
Q ss_pred HHHHHHHHhccCch---HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC----ChhHHHHHHH
Q 005174 414 IASILPLCARVANL---QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR----DEVTYTSLIA 486 (710)
Q Consensus 414 ~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~ 486 (710)
.+.+++.|.+.++. -+|+-+++...... +.|..+--.+|..|+-.|-+..|.++|..+.-+ |...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 44666778777764 45556666666654 566777778899999999999999999988744 333332 234
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHH---HHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQF---ERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~---~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
-+...|++..+...++...+- ..-+ ..+-..+..|| +.|.+....+.. +++... .-.....+-+..++.++..
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 455667877777777665441 0101 11222333344 445555444332 222211 0111134456778888889
Q ss_pred CCHHHHHHHHHhCCCCC
Q 005174 563 GLLNKAKEIITKMPYTP 579 (710)
Q Consensus 563 g~~~~A~~~~~~m~~~p 579 (710)
++.+.-...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 99999888888886333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.9e-06 Score=69.25 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 544 GIF-PQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 544 ~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
++. ++ .+..-.+...+...|++++|.++|+-.- ..| +...|..|..+|...|+++.|..++.++..++|++|..|.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 44 5666778888899999999999999873 344 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 005174 620 LIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++.+|...|+.++|.+-|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999987764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0033 Score=63.32 Aligned_cols=176 Identities=14% Similarity=0.109 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
.+.....+.++...-..--..+|...++...+..-+..|+.+|.++.+.+...-++.++++++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555566665544322233567777888888888888899998888888334478888888887764 67788888887
Q ss_pred hcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--
Q 005174 472 LMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYG-- 544 (710)
Q Consensus 472 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 544 (710)
.=.+ + ++.--...+.-+...++-..|..+|++....++.||. ..|..+|.--++-|++..+.++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 5432 2 3444456677777888888888888888887666663 4788888887888888888888887776544
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHH
Q 005174 545 IFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
..|....-..+++.|.-.+....-
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred hcCCCChHHHHHHHHhhccccccc
Confidence 444444555566666655554433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0036 Score=63.14 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=85.0
Q ss_pred CCCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCC
Q 005174 29 PINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKN 108 (710)
Q Consensus 29 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (710)
....-+.|..+|..++.-+-.. ..+++.+.++++.. +-|... ..+..-|..--+..+++....+|...+..- .+
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~-r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSP-RAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCc-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 3344567889999999876555 99999999999985 344432 266666777777889999999999888764 34
Q ss_pred CchhhHHHHHHHc-cCChhHHH----HhHhh------CCCCCCccHHHHHH---------HHHhCCCchHHHHHHHHHHh
Q 005174 109 PVLVPKLVTFYAS-FSLYNNAC----FLVEN------SNIRYPLPWNLLIS---------LYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 109 ~~~~~~l~~~~~~-~g~~~~A~----~~~~~------~~~~~~~~~~~li~---------~~~~~~~~~~A~~l~~~m~~ 168 (710)
...|...++--.+ .|+...++ +.|+- |.-..-..|+..+. -|..+.+.+...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6666666553222 23333322 22221 11222233666553 34455667777888888875
Q ss_pred C
Q 005174 169 R 169 (710)
Q Consensus 169 ~ 169 (710)
.
T Consensus 166 t 166 (656)
T KOG1914|consen 166 T 166 (656)
T ss_pred C
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00013 Score=72.04 Aligned_cols=162 Identities=7% Similarity=-0.055 Sum_probs=88.1
Q ss_pred hhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEG--RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 463 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
++++...++++.+. +...|+.....+.+.|+. ++++.+++++.+... -|..+|.....++.+.|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455544444321 333444333333333332 455566666655321 134455555555555666666666666
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHH
Q 005174 538 RMTSIYGIFPQ-LEHFACMVDLYGRA---GL----LNKAKEIITKM-PYTP-TSAMWATLLGACQIH----RNTGIGEWA 603 (710)
Q Consensus 538 ~~~~~~~~~p~-~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~ 603 (710)
++.+. .|+ ...|+....++.+. |. .++++++..++ ...| |...|+-+...+... ++...+...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 66543 333 34444444333332 21 23455555333 3334 667787777777663 334557777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhc
Q 005174 604 AEKLLETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (710)
+..+...+|.++.....|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 7777778888888888889988863
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.9e-05 Score=76.19 Aligned_cols=236 Identities=13% Similarity=0.130 Sum_probs=151.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN-YVTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 429 (710)
-+.+.|++.+|.-.|+..... +...|--|......+++-..|+..+++.++. .|+ ...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 356778888888888876554 4567888888888888888888888887775 444 4455555566777777777
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHh-------hhhhhcCChhHHHHHHhhcC-----CCChhHHHHHHHHHHhcCChHHH
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLV-------EMYARSGKVPEAKSVFDLMS-----RRDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A 497 (710)
|...++.-++.. ++- ...-.+-. ........+....++|-++. ..|......|.-.|-..|++++|
T Consensus 372 Al~~L~~Wi~~~-p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNK-PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhC-ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777776665543 110 00000000 01112222334444554443 23666777777777778888888
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 498 LKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
++.|+..+. ++|+ ...|+.|...++...+.++|...|.++++ ++|+ ++....|.-.|...|.++||.+.|-+.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 888888776 4564 55677777777887788888888888774 6788 677777777888888888887766433
Q ss_pred ---C---------CCCCHHHHHHHHHHHHhcCChH
Q 005174 576 ---P---------YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 576 ---~---------~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
. ..++...|.+|=.++.-.++.+
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 0 1123456666665555555544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-05 Score=73.24 Aligned_cols=183 Identities=18% Similarity=0.088 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc-hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---Chh---HH
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH-LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEV---TY 481 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---~~ 481 (710)
.....+......+...|+++.|...+..+....+-.+. ...+..+...|.+.|++++|...|+++.+. +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556777777889999999999999999887522221 246788899999999999999999998643 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHH
Q 005174 482 TSLIAGYGIQ--------GEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHF 552 (710)
Q Consensus 482 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 552 (710)
..+..++... |++++|.+.|+++.+. .|+.. .+..+.... . . .... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HHH
Confidence 5566666654 7889999999999874 55543 222211110 0 0 0000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKM----PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
..+...|.+.|++++|+..+++. |..| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999998888776 2223 356778888888889998888888777766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00019 Score=79.73 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=169.1
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHhhc-CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHHHH
Q 005174 311 VATVIGLGACSHVGALKLGKEIHGSAVRGC-YG---EYENVRNALITMYSRCKDLRHAYILFKMTAEK-S-IITWNSMLS 384 (710)
Q Consensus 311 ~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~ 384 (710)
..|...|......++++.|+.+.+++++.- +. .-..+|.++++.-..-|.-+...++|++..+- | -..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 345566666677777777777777766542 21 12356778888777778888888899887763 3 246788888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
.|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|+.++.++++.-+-..........+++-.++|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 899999999999999999876 3356677888888888888889999999888886422235666777788888999999
Q ss_pred HHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHH
Q 005174 465 EAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 465 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
.+..+|+..... -...|+..|+.-.++|+.+.+..+|++....++.|- ...|...|..-...|+-+.++.+-
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999987643 466899999999999999999999999999888775 346667776555666655444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=81.05 Aligned_cols=215 Identities=13% Similarity=0.119 Sum_probs=174.1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
+|-...-..+...+..+|-...|..+|++.. .|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4444555678888999999999999999764 688899999999999999999998887 389999999999888
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 498 (710)
....-+++|.++.+...... -..+.....+.++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888888888877655431 122222233478999999999865543 4568888888899999999999
Q ss_pred HHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 499 KLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 499 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
+.|..-.. ..|| ...|+.+-.+|.+.++-.+|...+++..+- . .-+...|...+-...+.|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999886 5676 457999999999999999999999998874 3 344566777888889999999999999887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0002 Score=71.22 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=112.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR 561 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 561 (710)
..-.+...|++++|+..++.+... .||.. .......-+...++.++|.+.++++.. ..|+ ....-.+.++|.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHh
Confidence 344556779999999999998875 55544 445556677899999999999999986 4788 6667788999999
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 562 AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.|+..+|+.++++.. .+-|+..|..|..+|...|+..++. ...+..|...|+|++|....+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998873 4458899999999999999976554 445677888999999999988
Q ss_pred HHHhCC
Q 005174 640 CMRDLG 645 (710)
Q Consensus 640 ~m~~~~ 645 (710)
...++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 877644
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.5e-05 Score=67.77 Aligned_cols=127 Identities=13% Similarity=-0.002 Sum_probs=83.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~ 594 (710)
..+-.++...|+-+.+..+....... -.-+....+.++....+.|++.+|...+++. +.++|...|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 44444555566666666665554321 1222445555777777777777777777766 2445677777777777777
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
|+++.|+..+.+++++.|.++..+..|+..|.-.|++++|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777777777777777777766655433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00013 Score=66.94 Aligned_cols=154 Identities=10% Similarity=0.073 Sum_probs=112.4
Q ss_pred hhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 533 (710)
+..|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777777776654443332221 11223566778888888877643 345677888888899999999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 534 KQFERMTSIYGIFPQ-LEHFACMVDLY-GRAGL--LNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~-~~~~~~li~~~-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
..|++... +.|+ ...+..+..++ .+.|+ .++|.+++++.- ..| +...+..+...+...|+++.|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998875 4676 77888888864 67777 589999998873 344 6778888888899999999999999999
Q ss_pred HhhCCCCCchHH
Q 005174 608 LETRPENSGYYV 619 (710)
Q Consensus 608 ~~~~p~~~~~~~ 619 (710)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999887765543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0051 Score=58.32 Aligned_cols=222 Identities=10% Similarity=0.013 Sum_probs=125.2
Q ss_pred CCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCC
Q 005174 30 INNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNP 109 (710)
Q Consensus 30 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (710)
....+.++..-..+.+.+...|.+.+|+.-|....+. .|+.. .++..-...|-..|....|..-+..+++. .||-
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y-~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNY-QAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhH-HHHHHHHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 3445667788888999999999999999999988764 33322 13333444566667666666666666654 4554
Q ss_pred chh-hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHccc
Q 005174 110 VLV-PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEM 188 (710)
Q Consensus 110 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 188 (710)
... -.-...+.+.|.++.|..-|+.+...++.. +....++.+.- +.+++.. ....+..+...
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~-------~~~e~~~---------l~~ql~s~~~~ 168 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLA-------LIQEHWV---------LVQQLKSASGS 168 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHH-------hHHHHHH---------HHHHHHHHhcC
Confidence 221 122345567788888877777654333311 11111111111 1111111 11222233445
Q ss_pred CCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 005174 189 MDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM---LERDAVSWNTMISAYASKGLWKEAFQLFVE 265 (710)
Q Consensus 189 ~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 265 (710)
|+...+......+..-.+-|...|..-..+|...|++..|+.=+... ...++.+..-+-..+...|+.+.++...++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55555555555555444556666666666777777777665544433 334555565666666667777777777766
Q ss_pred HHHcCCCCce
Q 005174 266 MQEEGVEVNV 275 (710)
Q Consensus 266 m~~~g~~p~~ 275 (710)
.++ +.||.
T Consensus 249 CLK--ldpdH 256 (504)
T KOG0624|consen 249 CLK--LDPDH 256 (504)
T ss_pred HHc--cCcch
Confidence 655 44453
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00093 Score=66.01 Aligned_cols=206 Identities=9% Similarity=0.027 Sum_probs=133.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhh
Q 005174 380 NSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVT-IASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 457 (710)
+.+-..+...++.++|+.+..++++. .|+..| +..--..+...+ .++++...+..+++.. +.+..+|+.-.-.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 33344455667778888888877765 454433 333323344455 5678888888888765 55556676665555
Q ss_pred hhcCCh--hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc---Cc-
Q 005174 458 ARSGKV--PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS---GL- 528 (710)
Q Consensus 458 ~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~- 528 (710)
.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 566653 567777776664 46778888888888889999999999999886544 445555554444443 22
Q ss_pred ---HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005174 529 ---VVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA----GLLNKAKEIITKM-PYTP-TSAMWATLLGACQI 593 (710)
Q Consensus 529 ---~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 593 (710)
.++...+...+.. +.|+ ...|+-+..+|... ++..+|.+++.+. ...| +......|+..|..
T Consensus 196 ~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2456666666654 4676 77788888888773 4456788887775 2233 56677777777764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=79.24 Aligned_cols=137 Identities=9% Similarity=0.054 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+...+.+.+.+++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777888888888888888888877 466644 566667777888888888888887765 4676 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
+..++.+.|++++|..+|++.- ..| +...|.++..++...|+.+.|..+++.+++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8888888888888888888773 233 467777777888888888888888888887766554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.9e-05 Score=66.84 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++.+.+++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4565 556677788888888888888888876 2233 667777888888888999999999999989999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 005174 622 ANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.+|...|++++|.+.++....
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998887665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.018 Score=61.91 Aligned_cols=215 Identities=14% Similarity=0.088 Sum_probs=129.4
Q ss_pred ccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHH--HccCChhHHHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHH
Q 005174 86 KVKALAQGKQLHACAIALGLEKNPVLVPKLVTFY--ASFSLYNNACFLVENSN---IRYPLPWNLLISLYVRDGFYAEAL 160 (710)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~ 160 (710)
..+++..|.+....+.+.. |+. .+...+.++ .|.|+.++|..+++... ..|..+...+-.+|.+.++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 3467777777777777653 333 344444444 47789999988888754 335667888888889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC----------HHHHHH
Q 005174 161 CVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQ----------VDVARR 230 (710)
Q Consensus 161 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~ 230 (710)
.+|++... ..|+..-...+..+|.+.+++..-.+.--++-..++...+.+=++++.+...-. ..-|.+
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99998875 457777777778888887777655444434434555566665566665554311 234455
Q ss_pred HHhhcCCCC--hhH---HHHHHHHHHhCCChHHHHHHHH-HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 231 LFDKMLERD--AVS---WNTMISAYASKGLWKEAFQLFV-EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 231 ~~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
.++.+.+.+ ..+ .-.-...+-..|++++|++++. ..-+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554332 000 1111223344566777777763 3333222223333344555666667777777776666665
Q ss_pred C
Q 005174 305 E 305 (710)
Q Consensus 305 ~ 305 (710)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-06 Score=52.16 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDN 175 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~ 175 (710)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-06 Score=51.98 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00041 Score=63.45 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
-..+...|+-+....+....... ..-|.......+....+.|++.+|...+++... .-.+|.+.|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 33444444444444444443221 111222333344444555555555555555543 122225555555555555555
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 565 LNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 565 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.++|..-|.+. ...| +....+.|...+...||.+.|+..+.......+.+...-..|+-+....|++++|.++
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555444443 1222 3444455555555555555555555555555555555555555555555555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00015 Score=72.94 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=106.6
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..... +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445666677778999999999999998888888889999999999999999999998642 235555555566688999
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYT 578 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 578 (710)
+++.|..+.+++.. +.|+ ..+|..|+.+|.+.|++++|+..++.+|..
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999985 5888 789999999999999999999999999843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00091 Score=73.07 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=116.7
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV-TMVA 518 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 518 (710)
++.+...+-.|.......|+.++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 577788999999999999999999999998874 4 5667888899999999999999999999984 56644 5556
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLL 588 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 588 (710)
+..++...|.+++|..+|+++... .|+ ...+..+..++-..|+.++|...|++.- ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 666778899999999999999863 566 7889999999999999999999999872 334445554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=74.02 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=97.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQI 593 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 593 (710)
..+|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778888888888888764 4553 445777777788888888888776 2233 56666666677889
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.++++.|...++++.++.|++..+|..|+.+|.+.|++++|+-.++.++
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=49.75 Aligned_cols=33 Identities=36% Similarity=0.676 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP 511 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (710)
.+|+.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=49.72 Aligned_cols=33 Identities=39% Similarity=0.554 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 005174 241 VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEV 273 (710)
Q Consensus 241 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 273 (710)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00087 Score=66.83 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=127.5
Q ss_pred ChhHHHHHHhhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR------RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 462 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
++.++...-+.+.. ++...+...+.+.........+..++.+-.+. .-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 34444444444442 24444555555443333333333333222221 11223344444 34577899999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
++.+... .|+ ........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|++.++....-+|
T Consensus 329 l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9998864 676 666778899999999999999999998 35666 67778888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..|+.+|...|+-.+|..-+.++...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 99999999999999999999999988877653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=70.40 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=48.6
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT-SAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~g~~~~ 599 (710)
..+.+++.+|...|.+.+. +.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4455566666666665553 4554 344444455556666666555555544 23332 3355555555555566666
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
|+++|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 6666666666666554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=73.06 Aligned_cols=231 Identities=13% Similarity=0.097 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAE--KS-IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 421 (710)
...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++.+++..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 34556666666667777777766664433 22 22333333344555554444333 11 1122
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 498 (710)
....++.....+...+.. ...+...+..+..+|-+.|+.++|..+++++.+- |+...|.+...|+.. +.++|+
T Consensus 94 ~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222222222222222222 1223334555666666666666666666655532 455556666666666 666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005174 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPY 577 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 577 (710)
.++.+.... +...+++..+.++|.++... .|+ ...+-.+....... ...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki~~~------------~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKVLGH------------REF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHHHhh------------hcc
Confidence 666555432 33334455555555555431 333 22221111111111 011
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 578 TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 578 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
..-..++--+-..|...++++.+...++.+++.+|.|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 1122233334445556666667777777777777777666666666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.007 Score=67.09 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 402 (710)
..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|++++.+.
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3444444444444444444444432 2334444444444444 444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0042 Score=56.96 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=65.7
Q ss_pred hhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh----ccCcHH
Q 005174 455 EMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS----HSGLVV 530 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~ 530 (710)
..|++.|++++|.+.......-.....+ +..+.+..+.+-|.+.+++|.+- . +..|.+-|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhh
Confidence 3444555555555555442211222111 22333444555555555555531 1 2333333333332 223455
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Q 005174 531 EGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIHR-NTGIGEWAAEKL 607 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 607 (710)
+|.-+|++|.++ ..|+..+.+-+..+....|++++|..++++. ....++.+...++......| +.+--.+.+.++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 555555555542 3455555555555555555555555555554 11223344433333322222 323334444444
Q ss_pred HhhCCC
Q 005174 608 LETRPE 613 (710)
Q Consensus 608 ~~~~p~ 613 (710)
....|.
T Consensus 269 k~~~p~ 274 (299)
T KOG3081|consen 269 KLSHPE 274 (299)
T ss_pred HhcCCc
Confidence 444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.016 Score=53.31 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=71.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hh
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY----GR 561 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~ 561 (710)
..|...|++++|++..... -..+....+ ...+.+..+++-|.+.++.|.+- . +..+.+-|..++ .-
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c-hHHHHHHHHHHHHHHhcc
Confidence 3455556666666655541 111222222 12234445566666666666531 1 223333333333 23
Q ss_pred cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 562 AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
.+.+.+|.-+|++|. ..|+..+.+....+|...|++++|+..++.++.-++.++++...++-+-.-.|+-+++
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 345666666666663 3455555555555566666666666666666666666666665555555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=57.35 Aligned_cols=112 Identities=10% Similarity=0.016 Sum_probs=80.3
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 005174 500 LFEEMNKNQIKPDH-VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P 576 (710)
Q Consensus 500 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 576 (710)
.|++... ..|+. .....+...+...|++++|.+.++.+... .|+ ...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444 34433 34555666677788888888888887653 454 677778888888888888888888776 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 577 -YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 577 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.+.+...+..+...+...|+.+.|...++.+++++|++..
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 2335667777777888888888888888888888887755
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00051 Score=69.59 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=51.8
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|...|+++.. +.|+ ...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455566666666666554 2444 445555555555556666555555554 1222 3444555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCchHHHH
Q 005174 599 IGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
.|...++.+++++|+++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 55555555555555555444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00031 Score=55.76 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
+..+...+...|++++|...+++.. ..| +...+..+...+...|+++.|...++.+..+.|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 5566777788888888888888762 233 44667777778888889999999999999888888888889999999999
Q ss_pred CchHHHHHHHHHHh
Q 005174 630 CWDKLAKVRTCMRD 643 (710)
Q Consensus 630 ~~~~A~~~~~~m~~ 643 (710)
++++|.+.+.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888777654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.001 Score=57.86 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=13.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
..+..++++|.+.|++++|...++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555556666666666655544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.2e-05 Score=45.97 Aligned_cols=31 Identities=48% Similarity=0.733 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.002 Score=55.94 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFAC 554 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 554 (710)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... .-.|+ ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44455555 3777788888888887752 222 22333445677788888888888888775 32222 123445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
|...+...|++++|+..++..+..+ ....+..+..++...|+.+.|..+++.+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6778888888888888887764222 4455666667788888888888888765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.015 Score=53.16 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=131.7
Q ss_pred CCCchHHHHHHHHHHh---CC-CCCCcc-cHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHH
Q 005174 153 DGFYAEALCVYKQMQS---RR-IRGDNF-TYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDV 227 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~---~g-~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (710)
..++++.++++.+|.. .| ..|+.. .|..++-+....+..+.|...+..+...++-+..+-..-.-.+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888753 34 556665 456666777788889999999999885554444443333333445699999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 228 ARRLFDKMLER---DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 228 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
|.++++.+.+. |.++|---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999764 5667776677777788888999988888776 7789999999999999999999999999999864
Q ss_pred CCCCChhHH-HHH---HHHhhccCChHHHHHHHHHHHhhc
Q 005174 305 ETYLDSVAT-VIG---LGACSHVGALKLGKEIHGSAVRGC 340 (710)
Q Consensus 305 ~~~p~~~t~-~~~---l~~~~~~~~~~~a~~i~~~~~~~~ 340 (710)
.|-...| ..+ +-.-+...+.+.++..+...++..
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3333332 222 222233345566666776666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.5e-05 Score=45.85 Aligned_cols=31 Identities=42% Similarity=0.662 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRI 171 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~ 171 (710)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.4e-05 Score=59.08 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHHhCC-CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 562 AGLLNKAKEIITKMP-YT---PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.|++++|+.+++++- .. ++...|..+..++.+.|+++.|..+++. .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355556666555551 11 2344455556666666666666666666 555565556666667777777777777777
Q ss_pred HHH
Q 005174 638 RTC 640 (710)
Q Consensus 638 ~~~ 640 (710)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.071 Score=52.64 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=86.3
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 529 (710)
.+..|.-+...|+...|.++..+..-|+..-|-..+.+|+..++|++-.++... +-++.-|-.++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888888888888888888888888876665332 22457788888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005174 530 VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQ 592 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~ 592 (710)
.+|..+..++. +..-+.+|.++|++.+|.+.--+.. |...+..+..-|.
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHCC
Confidence 88887776632 2456778888888888877766543 4555544444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=53.97 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG-CWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 643 (710)
+..+|..+...+...|+++.|...++++++++|+++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888899999999999999999999999999999999999999999 79999998887654
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00058 Score=69.07 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=96.2
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-R-----DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
.+.+......+++......+++.+..++-+... | -..|..++|+.|.+.|..++++.++..=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344455555666666666777777777766633 2 2335679999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhcc
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHV 323 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~ 323 (710)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999988888888887777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00082 Score=56.16 Aligned_cols=92 Identities=12% Similarity=-0.015 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIAN 623 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 623 (710)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444445555555555555555441 1121 2233344455555555555555555555555543 334555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 005174 624 MYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 624 ~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+.|++++|.+.++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 56666666666665555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00069 Score=65.54 Aligned_cols=255 Identities=11% Similarity=-0.016 Sum_probs=149.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhhhh
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNY----VTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVEMY 457 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~ 457 (710)
+|+.|+....+.+|+..++.| .-|. ..|..+-++|.-.+++++|.++|..-+.. |.-.-.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566666666666666666665 2222 23444455666666677776665432210 10011112223334444
Q ss_pred hhcCChhHHHHHHhhcCC-------C--ChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH--
Q 005174 458 ARSGKVPEAKSVFDLMSR-------R--DEVTYTSLIAGYGIQGE--------------------GRVALKLFEEMNK-- 506 (710)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~-- 506 (710)
--.|.+++|.-.-.+-.. + ....+-.+...|...|+ ++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666544332211 0 12233344455543332 2345555544222
Q ss_pred --CCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHH---HHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 005174 507 --NQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERM---TSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---- 575 (710)
Q Consensus 507 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---- 575 (710)
.|-. .-...|..|...|.-.|+++.|...++.- .+.||-+.. ...+..+.+++.-.|+++.|.+.|+..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 2211 11235666666777788999998877643 334455544 667888999999999999999988764
Q ss_pred ---C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 576 ---P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET----R--PENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 576 ---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
. ......+..+|.++|....+++.|+....+-+.+ + -.....|..|+++|...|..+.|+.+...-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 1 1123446677888888888888888777665544 2 224677899999999999999998876543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0016 Score=54.32 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=55.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLG 589 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~ 589 (710)
+..+...+...|++++|...|..+...+.-.|. ...+..+..++.+.|++++|.+.++.+. ..|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455556666666666665543111111 2344455666666666666666666542 1222 344555556
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
++...|+.+.|...++.+++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666677777777777777777765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.066 Score=55.91 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=15.6
Q ss_pred CCCCchhhHHHHHHHccCChhHHHHhHhh
Q 005174 106 EKNPVLVPKLVTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 134 (710)
.|.+..|..|...-...-.++.|+..|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 35566666665544444455555555544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0081 Score=54.76 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=114.0
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSL---IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
.+|.-++-+...+|+.+.|..+++.+..+-+-++... ..-+-..|++++|+++++...+.. +.|..++..=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 4555666666778888888888887764322222221 223445688889999998888764 445666665555555
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHR---NTGI 599 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g---~~~~ 599 (710)
..|.--+|.+-+....+. +.-|.+.|.-+.+.|...|++++|.-.++++- ..| +...+..+...+...| |.+.
T Consensus 132 a~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 566666888777777774 66778888888899999999999888888873 445 5566666666644433 6667
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
+...+.+.+++.|.+.
T Consensus 210 arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHhChHhH
Confidence 8888888888888543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=52.93 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=44.4
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...|+++.|...++.+++.+|++...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999998776553
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=56.37 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=84.0
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
|+.++ .+..-....-+-..|++++|..+|+-+- ..-+...|..|...|...++++.|...+..+..++++||..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55555 4444455666678999999999998763 23367788899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.+|...|+.++|+..+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999998887654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0061 Score=59.48 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=113.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH--HhhccCcHHHHHHHHHHHHHHhCCCCChhH------------
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS--ACSHSGLVVEGQKQFERMTSIYGIFPQLEH------------ 551 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~------------ 551 (710)
.++.-.|++++|.+.--..++.. ++ ..+..+++ ++...++.+.|...|++... +.|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 45667788888888777766532 11 12222333 34456778888888887763 4565221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 552 -FACMVDLYGRAGLLNKAKEIITKM-P-----YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 552 -~~~li~~~~~~g~~~~A~~~~~~m-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
+..=.+...+.|++.+|.+.+.+. . ..|+...|.....+..+.|+.++|....+.+++++|.-...|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222235567889999999999887 2 344555666666778899999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCC
Q 005174 625 YAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 625 ~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+...++|++|.+-++.......
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999887765443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00023 Score=51.83 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+...+...|+++.|...++.+++..|+++..+..++.++...|++++|.+.++...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888887777543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0053 Score=59.94 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
.+|-.+++...+.+..+.|..+|.+.++.+ ...+.....+++. +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467888888888888999999999998643 2223333333333 333567777999999999874 445677889999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.+.+.|+.+.|..+|++.- .-|. ...|...+.--.++|+.+....+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999873 2233 3599999999999999999999999999998874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=56.78 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=90.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFA 553 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 553 (710)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++... +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777788888888888888888876433332 35677777788888999999998888875 3565 66677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
.+..+|...|+...+..-++... ..++.|.+.++.+.+++|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 77778877777666554333211 22566788888888888876 6666666665554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0039 Score=66.08 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhhcc--------CcHHHHHHHHHHHHHH
Q 005174 477 DEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDH-VTMVAVLSACSHS--------GLVVEGQKQFERMTSI 542 (710)
Q Consensus 477 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~ 542 (710)
|...|...+.+.... +....|..+|++..+ ..|+. ..|..+..++... .++..+.+...+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 555566555554332 225577777777776 35653 2333332222110 1122222222222211
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.....+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 001112344555544444556666666665555 24455555555555555666666666666666666665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0011 Score=52.06 Aligned_cols=79 Identities=11% Similarity=0.137 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCceehHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCChhHH
Q 005174 243 WNTMISAYASKGLWKEAFQLFVEMQEEGV-EVNVITWNTIAGGCLRTG--------NFKGVLELLSRMRTQETYLDSVAT 313 (710)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~t~ 313 (710)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999998887653 345677888889888899999998
Q ss_pred HHHHHHhh
Q 005174 314 VIGLGACS 321 (710)
Q Consensus 314 ~~~l~~~~ 321 (710)
+.++....
T Consensus 108 nivl~~Ll 115 (120)
T PF08579_consen 108 NIVLGSLL 115 (120)
T ss_pred HHHHHHHH
Confidence 88886543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0026 Score=64.51 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=83.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
-...+...|++++|+.+|++.++.. .-+...|..+..+|...|++++|...++++.. +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 22466788888889999999999999999986 4776 77899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005174 563 GLLNKAKEIITKM-PYTPTSAMWATLLGAC 591 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 591 (710)
|++++|+..|++. ...|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999987 3556544444444333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=61.48 Aligned_cols=101 Identities=19% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
.+-+.+.+++++|+..|.+.++. .| |.+.|..-..+|++.|.++.|.+-.+..+. +.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 34577889999999999999985 44 677788888899999999999998888774 7888 88999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005174 563 GLLNKAKEIITKM-PYTPTSAMWATLLGA 590 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p~~~~~~~l~~~ 590 (710)
|++++|++.|++. .+.|+..+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999987 577877666554433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0011 Score=59.22 Aligned_cols=97 Identities=14% Similarity=0.256 Sum_probs=71.1
Q ss_pred HHHHhhc--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhc-------------
Q 005174 229 RRLFDKM--LERDAVSWNTMISAYASK-----GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT------------- 288 (710)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------------- 288 (710)
...|+.. ..+|..+|..++..|.+. |..+=....+..|.+-|+..|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888887654 66777778888899999999999999999887542
Q ss_pred ---CChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCC
Q 005174 289 ---GNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGA 325 (710)
Q Consensus 289 ---g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~ 325 (710)
.+-+-|++++++|...|+.||..|+..++..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345577777777777777777777777777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0094 Score=53.35 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|...++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34567777777788888888888888876432221 24677777778888888888888888765 3455 555666
Q ss_pred HHHHHH
Q 005174 555 MVDLYG 560 (710)
Q Consensus 555 li~~~~ 560 (710)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 666666
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0032 Score=56.40 Aligned_cols=85 Identities=6% Similarity=-0.066 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhH
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPK 114 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (710)
-....+..+...+...|++++|+..|++.......|.....++..+..++...|+.++|...+..+++.. +.....+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3456677788888889999999999998876644443322377788888888889999988888887653 333445555
Q ss_pred HHHHHH
Q 005174 115 LVTFYA 120 (710)
Q Consensus 115 l~~~~~ 120 (710)
+..+|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 555555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=57.32 Aligned_cols=82 Identities=13% Similarity=-0.054 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---T-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...+..+...|.+.|++++|...|++.- ..| + ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3345666666777777777777776552 112 1 3566777777888888888888888888888888888888888
Q ss_pred HHHhcCC
Q 005174 624 MYAATGC 630 (710)
Q Consensus 624 ~~~~~g~ 630 (710)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8887776
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00022 Score=43.52 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.18 Score=49.29 Aligned_cols=279 Identities=16% Similarity=0.117 Sum_probs=183.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHhcC---CCChhHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHH
Q 005174 348 RNALITMYS--RCKDLRHAYILFKMTA---EKSIITWNSMLSG--YTHLDCAEESAFLFREMFRSGVEPNY--VTIASIL 418 (710)
Q Consensus 348 ~~~li~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll 418 (710)
|.+|-.++. -.|+-..|+++-.+.. ..|-...-.++.+ -.-.|+++.|.+-|+.|... |.. ..+..+.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 456655554 3577777877766543 3454444444443 34569999999999999763 322 2233344
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-----CCChh--HHHHHHHHHHh-
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-----RRDEV--TYTSLIAGYGI- 490 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~- 490 (710)
-.-.+.|+.+.|+++-......- +.-...+.+.+...+..|+++.|+++.+.-. ++++. .--.|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 44457888899988888777664 4556778899999999999999999998654 34433 22233332221
Q ss_pred --cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 005174 491 --QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 491 --~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 567 (710)
.-+...|...-.+..+ +.||.. .-..--.++.+.|++.++-.+++.+-+. .|.+.++... .+.+.|+.-.
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~ 312 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH
Confidence 2346666666666554 677744 3344456788999999999999988754 6666555433 3456665332
Q ss_pred H----HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHH
Q 005174 568 A----KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT-GCWDKLAKVRTC 640 (710)
Q Consensus 568 A----~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 640 (710)
. .+-++.|. +.+..+.-.+..+....|++..|....+.+..+.|. ...|..|+++-... |+-+++...+.+
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2 12233443 235666667778888899999999999999999995 47788999987765 888877665443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0064 Score=64.47 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=100.6
Q ss_pred CCCCChHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 005174 508 QIKPDHVTMVAVLSACSHS-----GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--------GLLNKAKEIIT 573 (710)
Q Consensus 508 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 573 (710)
+...|...|..++.+.... +....|..+|++..+ +.|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778898888875432 347789999999986 5898 55666655544332 22345555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 574 KM---P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 574 ~m---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+. + ...+...+..+.-.....|+.+.|...++++++++| +...|..++.++...|+.++|.+.+.+...+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 42 1 233556777777667778999999999999999999 578999999999999999999999988766555
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00094 Score=49.96 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+...++++.|.++++.+++++|+++..+...+.+|.+.|++++|.+.++...+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5677889999999999999999999999999999999999999999999888775433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00079 Score=52.01 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQI-KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 568 (710)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . .+.|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677788888888777432 12344455567777778888888888776 2 22333 34444557777788888888
Q ss_pred HHHHHh
Q 005174 569 KEIITK 574 (710)
Q Consensus 569 ~~~~~~ 574 (710)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0013 Score=47.79 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
+...+.+.|++++|++.|++. ...| +...|..+..++...|+++.|...++.+++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888877 3344 566777788888888888888888888888888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0056 Score=48.20 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLY 559 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 559 (710)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|...++..... .|. ...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHH
Confidence 4445555666666666666666665531 112234444555555556666666666555432 222 33445555555
Q ss_pred HhcCCHHHHHHHHHh
Q 005174 560 GRAGLLNKAKEIITK 574 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~ 574 (710)
...|+.++|...+++
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.015 Score=54.90 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=85.7
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhhCCCCCchHH
Q 005174 546 FPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIH---RNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 546 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
.|+ .+.|-.|...|.+.|+.+.|..-|.+.. ..++...+..+..++... .+..++..+++++++.+|.+.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 566 8899999999999999999999998772 334677777777664332 3566789999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 620 LIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
.|+-.+...|++.+|...|+.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999876653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.076 Score=50.48 Aligned_cols=172 Identities=11% Similarity=0.073 Sum_probs=96.6
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC--Ch-h---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc--
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR--DE-V---TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH-- 525 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~--~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 525 (710)
...+.+.|++++|.+.|+.+... +. . ..-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445567777777777776643 11 1 1233556677777888888888777764211112233333333221
Q ss_pred c---------------CcH---HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005174 526 S---------------GLV---VEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL 587 (710)
Q Consensus 526 ~---------------g~~---~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 587 (710)
. .+. .+|...|+.+.+ -|-...-..+|...+..+...--..-+ ..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e~-~i 181 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYEL-SV 181 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHHH-HH
Confidence 0 011 223333333333 333333344444444333200000011 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..-|.+.|.+..|..-++.+++--|+. .+....++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345778889888888899999888875 5667788999999999999998876543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=50.10 Aligned_cols=94 Identities=12% Similarity=-0.050 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+....-.+..-+...|++++|..+|+-... +.|. ...|..|..+|-..|++.+|...|..... +.|+ ...+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 333344444555566666666666666655 2333 33444455555556666666666666653 3455 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+..+|...|+.+.|.+-|+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.16 Score=50.19 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=85.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI 593 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 593 (710)
.+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..|+|++-.++... +..++-|.-++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35556677777888888777765543 44 8889999999999999999998887664 3355888999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+|+...|.....+ -.+..-+..|.+.|.|.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9998777766655 1236678899999999999887433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.059 Score=46.77 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=97.8
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP------YTPTS 581 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~ 581 (710)
.-|+...-..|..+....|+..+|...|++... |+-.+ ....-.+.++....++..+|...+++.- -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666778888888888888888888776 55444 6677778888888888888888887762 23443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
. -.+...+...|..+.|+.+++.+..--|+ +..-...+..+.++|+.++|..-+..+.+
T Consensus 163 ~--Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 H--LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred h--HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3 34567788889999999999999998885 56667778889999999988776555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.019 Score=56.07 Aligned_cols=126 Identities=10% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL-CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 34444444445555555555555554322 1112222222221 12234444455555555554 45666666666666
Q ss_pred hhhcCChhHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSRR------DEVTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.+.++.+.|..+|++.... -...|...+.--.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665532 223566666666666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=46.26 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHhhccC--------cHHHHHHHHHHHHHHhCCCCChhHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQI-KPDHVTMVAVLSACSHSG--------LVVEGQKQFERMTSIYGIFPQLEHF 552 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 552 (710)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. ++-+.+.+|+.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999999876542 345677889999876 899999999
Q ss_pred HHHHHHHHh
Q 005174 553 ACMVDLYGR 561 (710)
Q Consensus 553 ~~li~~~~~ 561 (710)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999888765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.74 Score=49.15 Aligned_cols=338 Identities=12% Similarity=0.049 Sum_probs=167.9
Q ss_pred hcCCChHHHHH-----HHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCC
Q 005174 203 ACHEWSLFVHN-----ALVSMYGKFGQVDVARRLFDKMLERD---AVSWNTMISAYASKGLW--KEAFQLFVEMQEEGVE 272 (710)
Q Consensus 203 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~ 272 (710)
-|++.+..-|. .+++-+...+.+..|+++-..+..|- ...|.....-+.+..+. +++++...+=...-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 44555444443 35666777788888888888886664 34555555555555322 233333333222212
Q ss_pred CceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHH
Q 005174 273 VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETY----LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVR 348 (710)
Q Consensus 273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 348 (710)
-...+|..+..-....|+.+-|..+++.=...+-. .+..-+...+.-+...|+.+...+++-++...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~------ 578 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR------ 578 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------
Confidence 35577888888888889998888887654333211 12223555667777777777776666555432110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHH--HH----HHcCCCCcHHHHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTHLDCAEESAFLFR--EM----FRSGVEPNYVTIASILPLC 421 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~--~m----~~~g~~p~~~t~~~ll~~~ 421 (710)
-+.+....+...|..+|....+ .|..+ +..+-+.++-.+++..|. .. ...|..|+.. ..-.+|
T Consensus 579 ---s~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~ 648 (829)
T KOG2280|consen 579 ---SSLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAF 648 (829)
T ss_pred ---HHHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHH
Confidence 0011111222333333332211 11110 011111122112211111 10 0112223322 233334
Q ss_pred hccCchHHHH----------HHHHHHHH-hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh
Q 005174 422 ARVANLQHGK----------EFHCYILR-RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI 490 (710)
Q Consensus 422 ~~~~~~~~a~----------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 490 (710)
++.....-.. .+.+.+.. .| ..-.-.+.+--+.-+...|+..+|.++-.+.+-+|-..|-.=+.+++.
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~-~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFG-GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 3333211111 11111111 11 112222233334445566777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKE 570 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 570 (710)
.+++++-+++-+.++ .+.-|.-+..+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC----------hHHHHHHHHHhccHHHHHH
Confidence 777776655544432 134555666777777777777777655421 1145667777777777766
Q ss_pred HHHh
Q 005174 571 IITK 574 (710)
Q Consensus 571 ~~~~ 574 (710)
+--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.35 Score=47.80 Aligned_cols=147 Identities=13% Similarity=-0.034 Sum_probs=81.6
Q ss_pred hccCchHHHHHHHHHHHHhCCCCCchHHHhHHh--hhhhhcCChhHHHHHHhhcCCCChh---------------HHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV--EMYARSGKVPEAKSVFDLMSRRDEV---------------TYTSL 484 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 484 (710)
...++.+.|.++-..+++.. ..+. +..++ .++--.++.+.|...|++..+.++. .|..=
T Consensus 180 ~~~~~~~~a~~ea~~ilkld--~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD--ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhcccchhHHHHHHHHHhcc--cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34556666666555555543 1111 11112 1222345566666666665543222 12222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN---QIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG 560 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 560 (710)
.+-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..-.+.... +.|. +..|-.-..++.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 23345677788888888777652 3444455566666666777788887777766653 4555 444544455566
Q ss_pred hcCCHHHHHHHHHhC
Q 005174 561 RAGLLNKAKEIITKM 575 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m 575 (710)
-.+++++|.+-+++.
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.063 Score=55.58 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=104.1
Q ss_pred HHHHhcCC--hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC
Q 005174 384 SGYTHLDC--AEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461 (710)
Q Consensus 384 ~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (710)
.+|.+..+ +-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .| . -|.-+++|....
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G-~------enRAlEmyTDlR 672 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SG-H------ENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cC-c------hhhHHHHHHHHH
Confidence 34444333 44556667888999988988753 3456677888888887753 33 1 234455565656
Q ss_pred ChhHHHHHHhhcCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCC---ChHHHHH
Q 005174 462 KVPEAKSVFDLMSRR--------------DEVTYTSLIAGYGIQGEGRVALKLFE------EMNKNQIKP---DHVTMVA 518 (710)
Q Consensus 462 ~~~~A~~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~t~~~ 518 (710)
.++.|.++...-... |+.--.+....+...|+.++|..+.- -+.+-+-+. +..+...
T Consensus 673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 666666655433210 11111223344556677777665432 122222222 3344555
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTS 581 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~ 581 (710)
+...+-+...+..|-++|.+|-. ...++++....+++++|..+-++.| ..||+
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 55455566667778888888743 4567889999999999999999987 34443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.49 Score=46.42 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCCCC--hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-----PDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIY-GIFPQ--LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 550 (710)
.+..+...+.+.|++++|+++|++....... .+.. .|...+-++...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445677788889999999999888764332 2221 23333445667789999999998876431 22223 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 005174 551 HFACMVDLYGR--AGLLNKAKEIITKMP 576 (710)
Q Consensus 551 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 576 (710)
....|++++-. ...+++|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 45566676653 346777777777775
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0067 Score=60.98 Aligned_cols=66 Identities=17% Similarity=-0.124 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY---YVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+...|+.+..+|...|++++|...++++++++|++... |..++.+|...|+.++|.+.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367789999999999999999999999999999998854 999999999999999999998888764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.33 Score=46.20 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH---HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW---NTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
...+-.....+.+.|++++|.+.|+++...-... .... -.+..++.+.+++++|...+++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333334444556677777777777776532221 1111 234456667777777777777766553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.023 Score=57.82 Aligned_cols=120 Identities=12% Similarity=0.109 Sum_probs=90.7
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE--GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
+......++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.++.+++.=...|+-||.+|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5556667777777777788888888887654 22223455678899999999999999999888888999999999888
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC 358 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~ 358 (710)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887777666665554444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=51.01 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=61.1
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--hHHHHHHHHH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ-GEGRVALKLFEEMNKN----QIKPD--HVTMVAVLSA 522 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a 522 (710)
+...++.|...|++..|-+++.+ +...|... |++++|++.|++..+. | .+. ...+..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34444556666666666555443 55566666 7777777777775542 2 111 2244555566
Q ss_pred hhccCcHHHHHHHHHHHHHHhC----CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 523 CSHSGLVVEGQKQFERMTSIYG----IFPQL-EHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
+.+.|++++|.++|+++....- .+.+. ..+-..+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777655311 11121 22333444556667777777777765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0073 Score=44.27 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=37.5
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATL 587 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l 587 (710)
..|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.++++++. ..|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456777777777777654 454 6666667777777777777777777763 34554444333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.043 Score=45.16 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=66.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPD--HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVD 557 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 557 (710)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+ |+ ......+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 45667788999999999999998887655 3366677788889999999999999888752 43 222233455
Q ss_pred HHHhcCCHHHHHHHHHh
Q 005174 558 LYGRAGLLNKAKEIITK 574 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~ 574 (710)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888999999887754
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0048 Score=45.43 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR-NTGIGEWAAEKLLETRP 612 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 612 (710)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| +++.|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 345666666666677777776666665 2223 4556666666777777 57777777777777766
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.022 Score=51.11 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=75.3
Q ss_pred HHHHHhhc--CCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC-----------
Q 005174 466 AKSVFDLM--SRRDEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG----------- 527 (710)
Q Consensus 466 A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 527 (710)
-...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466888888888888754 667777788889999999999999999998775422
Q ss_pred -----cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 528 -----LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 528 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
+-+-|..++++|... |+.||.+++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 234578888888664 888888888888888887764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.24 Score=45.74 Aligned_cols=169 Identities=12% Similarity=0.083 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE--KS--------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 418 (710)
++|++.|.-..-+++-...|+.-.. .. ....+.++..+...|.+.-.+.++++.++...+.+......+.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 4555555444444444444443222 12 2344667777777888888888999998876667777778888
Q ss_pred HHHhccCchHHHHHHHHHHHHhCC----CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhc
Q 005174 419 PLCARVANLQHGKEFHCYILRRAM----FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQ 491 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 491 (710)
+.--+.|+.+.|...++.+.+..+ ..-...+.......|.-.+++..|...|+++... |++..|.-.-+..-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 888889999999999987765541 2233334444445566678888999999887754 566667666666777
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHH
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAV 519 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~l 519 (710)
|+..+|++..+.|... .|.+.+-+++
T Consensus 300 g~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 8999999999999874 5555544433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=55.78 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=41.3
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQL----EHFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIH 594 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~ 594 (710)
.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+- ..| ....+..+...+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 4445566666666555544 2331 234445555555555555555554441 111 122333333444445
Q ss_pred CChHHHHHHHHHHHhhCCCC
Q 005174 595 RNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~ 614 (710)
|+.+.|...++.+++..|++
T Consensus 231 g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 55555555555555555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.92 Score=45.54 Aligned_cols=437 Identities=12% Similarity=0.046 Sum_probs=206.3
Q ss_pred HHccCChhHHHHhHhhCCCC---CCcc------HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--cc
Q 005174 119 YASFSLYNNACFLVENSNIR---YPLP------WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKAC--GE 187 (710)
Q Consensus 119 ~~~~g~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~ 187 (710)
+.+.+++.+|.++|.++-.. ++.. -+.+|++|..+ +.+.....+....+ ..| ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 35678888888888876422 2222 34456666543 23333333333333 223 34455555553 34
Q ss_pred cCCchHHHHHHHHHH-h--cCCC------------hHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CChhHHH
Q 005174 188 MMDVDFGRVVHSCID-A--CHEW------------SLFVHNALVSMYGKFGQVDVARRLFDKMLE--------RDAVSWN 244 (710)
Q Consensus 188 ~~~~~~a~~~~~~~~-~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 244 (710)
.+....|.+.+.... . +..+ |...-+..++.+...|.+.+++.++++|.+ -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 556666665555444 1 2221 222234455555666666666666666522 1555555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH---cCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhh
Q 005174 245 TMISAYASKGLWKEAFQLFVEMQE---EGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACS 321 (710)
Q Consensus 245 ~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~ 321 (710)
.++-.+.+ ..|-++++ ..+-|| |.-+|-.|.+.=..-+ .-.-..+.|....+..++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHH
Confidence 54433322 12222211 112222 2223333322111000 0000112333333333333222
Q ss_pred ccC--ChHHHHHHHHHHHhhcCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCChhHHHHHHHHHHhcC
Q 005174 322 HVG--ALKLGKEIHGSAVRGCYGEYE-NVRNALITMYSRCKDLRHAYILFKMT--------AEKSIITWNSMLSGYTHLD 390 (710)
Q Consensus 322 ~~~--~~~~a~~i~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~li~~~~~~g 390 (710)
-.. .+.--.+++..-...-+.|+- -+...|+..+.+ +.+++..+-+.+ .+.=+.++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 122222333333333333432 234455555544 344443333322 1223457788888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHH-------HHHHh-ccCch---HHHHHHHHHHHHhCCCCCc-hHHHhHHh---h
Q 005174 391 CAEESAFLFREMFRSGVEPNYVTIASI-------LPLCA-RVANL---QHGKEFHCYILRRAMFNEH-LLLWNSLV---E 455 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~t~~~l-------l~~~~-~~~~~---~~a~~~~~~~~~~~~~~~~-~~~~~~li---~ 455 (710)
+...|-+.+.-+.-. .|+...-..+ -+..+ .-.++ ..=..+|..+... ..| ......|+ .
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~---DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY---DIDRQQLVHYLVFGAK 387 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHH
Confidence 888888877766543 3332211111 11111 11111 1112222222221 111 11122222 2
Q ss_pred hhhhcCC-hhHHHHHHhhcCC---CChhHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCChH----HHHHHH
Q 005174 456 MYARSGK-VPEAKSVFDLMSR---RDEVTYTSLI----AGYGIQ---GEGRVALKLFEEMNKNQIKPDHV----TMVAVL 520 (710)
Q Consensus 456 ~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll 520 (710)
-+-+.|. -++|.+++..+.+ -|..+-|.+. ..|.+. ....+-+++-+-..+.|+.|-.+ .-+.|-
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 2334444 7778888877653 2444333322 223221 22344444444555678777433 233333
Q ss_pred HH--hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005174 521 SA--CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588 (710)
Q Consensus 521 ~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~ 588 (710)
+| +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++...| |+...|++-.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskv 532 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKV 532 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHH
Confidence 33 456788888765544443 379999999999999999999999999999987 5777776543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.28 Score=51.09 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=62.0
Q ss_pred hhhhhHHHHHHHHHhCCCchHHHHH---------HHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHH--HHHHHHHHh
Q 005174 35 IMRINLLETLKDFAGRGNLSKAFEA---------FTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGK--QLHACAIAL 103 (710)
Q Consensus 35 ~~~~~~~~ll~~~~~~~~~~~A~~~---------~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~ 103 (710)
+...++.+-+--|...|.+++|..+ |+.+-..... .- .+...=.+|.+.++..--+ .-++.+.+.
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALe--AL--~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALE--AL--DFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHh--hh--hhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3344455556667778888887642 2222221111 11 3344445566655543322 223455556
Q ss_pred CCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHh
Q 005174 104 GLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 104 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~ 168 (710)
|-.|+.. .+...++-.|++.+|.++|.+ .|.-.+|+++|..|+-
T Consensus 630 ge~P~~i---LlA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM 673 (1081)
T KOG1538|consen 630 GETPNDL---LLADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM 673 (1081)
T ss_pred CCCchHH---HHHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH
Confidence 6556654 345567778999999888864 5777788888877763
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.024 Score=46.67 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=60.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCC---CCchhhHHHHHH
Q 005174 43 TLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEK---NPVLVPKLVTFY 119 (710)
Q Consensus 43 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 119 (710)
.-.++-..|+.++|+.+|++....|.........+..+...+...|++++|..+++...... +. +..+...+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556778888899999988888877766555577778888888888888888888777653 21 122223333445
Q ss_pred HccCChhHHHHhHh
Q 005174 120 ASFSLYNNACFLVE 133 (710)
Q Consensus 120 ~~~g~~~~A~~~~~ 133 (710)
...|+.++|...+-
T Consensus 86 ~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 86 YNLGRPKEALEWLL 99 (120)
T ss_pred HHCCCHHHHHHHHH
Confidence 56677777666553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0046 Score=40.56 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
.+|..+..++...|+++.|++.++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999988887764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.41 Score=41.82 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD---HVT 515 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t 515 (710)
..|+...--.|..+....|+..+|...|++... .|....-.+.++....+++..|...++++.+.. |+ +.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 345555555666666777777777777766543 366666666677777777777777777766632 22 223
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEI 571 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 571 (710)
...+...+...|...+|+..|+...+ ..|+..........+.++|+.++|..-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555667777777778888877765 356665555566677777777766443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.96 Score=44.45 Aligned_cols=245 Identities=12% Similarity=0.045 Sum_probs=110.1
Q ss_pred cCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 358 CKDLRHAYILFKMTAEKSI---ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.|+.+.|.+-|+.|...-. .-...|.-.-.+.|..+.|..+-...-+.- +--.-.....+...+..|+++.|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 4666666666666654211 111122222234555666655555544331 112234455566666666666666666
Q ss_pred HHHHHhCCCCCchHHHh--HHhhhhh---hcCChhHHHHHHhhcC--CCChhH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 435 CYILRRAMFNEHLLLWN--SLVEMYA---RSGKVPEAKSVFDLMS--RRDEVT-YTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~--~li~~~~---~~g~~~~A~~~~~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.-.....+.++..--. .|+.+-+ -..+...|...-.+.. .||.+. -..-..++.+.|+..++-.+++.+-+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 65554442333322111 1111100 0112333333332222 233322 22234556666666666666666666
Q ss_pred CCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 005174 507 NQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMW 584 (710)
Q Consensus 507 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 584 (710)
....|+. +... ...+.|+. +..-+++....-.++|+ .+..-.+..+-...|++..|..--+.. ...|....|
T Consensus 292 ~ePHP~i--a~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~ 365 (531)
T COG3898 292 AEPHPDI--ALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAY 365 (531)
T ss_pred cCCChHH--HHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHH
Confidence 4333332 2211 13344432 22222222222235555 555555666666666666555444333 234555555
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHh
Q 005174 585 ATLLGACQ-IHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 585 ~~l~~~~~-~~g~~~~a~~~~~~~~~ 609 (710)
..|...-. ..||-.+....+-+.++
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55555533 33665555555554444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.024 Score=55.78 Aligned_cols=62 Identities=16% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++..|...|.+.+++..|.+.+.+.++++|+|....+.-+.+|...|.++.|+..++++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 35566777788889999999999999999999999999999999999999999999998875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.055 Score=51.86 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
.|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.|.-.|. ...+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445668888888888888874 3443 35566777788888888888888888876544443 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+...|...|+.++|.+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677788888888888888776
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.1 Score=46.54 Aligned_cols=150 Identities=10% Similarity=0.076 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCC
Q 005174 211 VHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290 (710)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 290 (710)
+.....+.+.+.|++++|...|-+-..--.. ..+|.-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 4445556667789999998877655321111 23456666677777777888888888876 55566788999999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 291 FKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKM 370 (710)
Q Consensus 291 ~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (710)
.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|..+-..... ... .|--.+-..+++++|.+.+..
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEW---VLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhc
Confidence 988888877655 3322 11244566677777777777655443322 222 222334556889999999998
Q ss_pred cCCC
Q 005174 371 TAEK 374 (710)
Q Consensus 371 ~~~~ 374 (710)
++-+
T Consensus 516 lp~~ 519 (933)
T KOG2114|consen 516 LPIS 519 (933)
T ss_pred CCHH
Confidence 8754
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.015 Score=43.38 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 557 DLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
..|.+.+++++|.++++++- ..| +...|......+...|+++.|.+.++.+++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56778888888888888772 334 5666777777788888888888888888888887755443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.3 Score=45.10 Aligned_cols=138 Identities=9% Similarity=0.000 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh----CCCCChhHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIY----GIFPQLEHFACM 555 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 555 (710)
..+.++..+.-.|.+.-.+.++++.++...+-++.....|.+.-.+.|+.+.|..+|+...+.. ++.-..-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777888888888999998886656667777888888888899999999999765542 222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 556 VDLYGRAGLLNKAKEIITKMPYT-P-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
...|.-++++-+|...+++.+.. | |+..-|.-.-...-.|+...|.+..+.+++..|....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 45556677788888888777522 2 33333332222333466666777777777777754433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.52 Score=43.54 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhC
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALG 104 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 104 (710)
+...+-.....+...|++.+|+..|+.+...-+...........++.++-+.|++..|...++..++.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455566677889999999999999988766555554577788888888999999999998888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.047 Score=53.37 Aligned_cols=128 Identities=13% Similarity=-0.010 Sum_probs=88.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH----hCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC-------CC--Chh
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILR----RAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS-------RR--DEV 479 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~ 479 (710)
.|..+-+.|.-.|+++.+...|+.-+. -|.-......+..|.+++.-.|+++.|.+.|+.-. .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555555667888998888766443 23222334577888889999999999998887533 23 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNK----NQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
+.-+|.+.|.-..++++|+.++.+-+. .+ ..-....+.+|..++...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667788888888899999988876442 11 12235578889999999998888887665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.044 Score=44.40 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=73.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN----SGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 629 (710)
.-+++..|+++.|++.|.+.- .+.+...||.-..+++..|+.++|..-+++++++.-+. ...|+.-+-+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 346778889999998888762 23477888999999999999999999999998885432 456888888999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 005174 630 CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~ 646 (710)
+.|.|..-|......|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999998888877766
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.58 Score=46.81 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=97.1
Q ss_pred HHhhhhhhcCChhHHHHHHhhcCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMSRR-------DEVTYTSLIAGYGI---QGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
.++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666677777777666543 11111223444555 7888888888888666666777777776665
Q ss_pred Hhh---------ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---Hh-C----CCCCC
Q 005174 522 ACS---------HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLN----KAKEII---TK-M----PYTPT 580 (710)
Q Consensus 522 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m----~~~p~ 580 (710)
.|- .....++|...|.+.- .+.|+..+--.++..+.-.|... +..++- .. . ...+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 442 1223677777777653 56677544434444455555322 222222 11 1 12334
Q ss_pred HHHH--HHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 581 SAMW--ATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 581 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...| .+++.++.-.||.+.|.++++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4444 578888999999999999999999998765
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.092 Score=43.71 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 509 IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
..|+..+..+++.+|+..|++..|.++.+...+.|++.-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345555555555555555555555555555555555444444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.042 Score=50.93 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcC-----------
Q 005174 228 ARRLFDKML--ERDAVSWNTMISAYASK-----GLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTG----------- 289 (710)
Q Consensus 228 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------- 289 (710)
....|.... ++|-.+|-+.+..+... +.++-....+..|.+.|+..|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 56888888888877654 566767777889999999999999999998775432
Q ss_pred -----ChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccC
Q 005174 290 -----NFKGVLELLSRMRTQETYLDSVATVIGLGACSHVG 324 (710)
Q Consensus 290 -----~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~ 324 (710)
+-+-+++++++|...|+.||..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 22335566666666666666666555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.71 Score=42.64 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCC--CceehHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005174 247 ISAYASKGLWKEAFQLFVEMQEEGVE--VNVITWNTIAGGCLRTGNFKGVLELLSRMRTQ 304 (710)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 304 (710)
...+.+.|++.+|.+.|+.+...-.. --....-.++.++.+.|+++.|...+++....
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455566666666666666543111 11223334455566666666666666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2 Score=43.13 Aligned_cols=130 Identities=13% Similarity=0.055 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhH-HHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEH-FACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~ 557 (710)
.|-..++.-.+..-.+.|..+|-+..+.| +.++...+++++..+ ..|+..-|..+|+.-... -||... -+-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHHHH
Confidence 45555555556666666777777777666 455666666666544 345666666666655443 344222 234555
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+.+.++-+.|..+|+..- ...+ ...|..+|.--..-|+...+...-+++.+..|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6666677777777776441 1122 346666666666667766666666666666665
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0064 Score=49.76 Aligned_cols=40 Identities=33% Similarity=0.695 Sum_probs=31.4
Q ss_pred CeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCcccCCccccH
Q 005174 651 GCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGYVVKEEFCSE 702 (710)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~~~~~~~~~~ 702 (710)
|+||+++ |.|++||.+||+. ++..+++..||.|++..+..
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~ 41 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGH 41 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCC
Confidence 7899988 9999999999998 34455666777777776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.15 Score=44.32 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=69.9
Q ss_pred hccCcHHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYG--IFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
...++.+.+...++++...+. +-|+... ..-.......++.+ -......++..+...|+++.+.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 455677777777777766542 2222111 11122222233332 1235556777788999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 602 WAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++.++..+|-+-..|..++.+|.+.|+..+|.+++..+.
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.012 Score=44.62 Aligned_cols=24 Identities=8% Similarity=0.063 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
++..++.+|...|++++|++.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555555555554443
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.68 E-value=4.2 Score=44.39 Aligned_cols=83 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCc--cHHHHHHHHHhCCCch
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPL--PWNLLISLYVRDGFYA 157 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~ 157 (710)
+++-+-....+..-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .... -....+..+.+.+-.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHH
Confidence 333344444444444555555555532 33334556666666666666555555444 1111 1334444454455455
Q ss_pred HHHHHHH
Q 005174 158 EALCVYK 164 (710)
Q Consensus 158 ~A~~l~~ 164 (710)
+|..+-.
T Consensus 481 ~a~~LA~ 487 (933)
T KOG2114|consen 481 EAELLAT 487 (933)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.2 Score=43.48 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=38.6
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RDE----VTYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+.+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666666666666666666665442 321 2366666666666666666666666665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.02 Score=43.31 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-----Y---TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
..+|+.+...|.+.|++++|++.+++.- . .|+ ..++..+...+...|+++.|.+.+++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5678999999999999999999998761 2 233 457788889999999999999999998876
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.8 Score=41.41 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 569 KEIITKMPYTP----TSAMWATLLGA--CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 569 ~~~~~~m~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++++....| +...-|.|..| ...+|++.++.-....+.++.| ++.+|..+|-++....+++||.++++.++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34445554333 44566777777 5689999999999999999999 89999999999999999999999977643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.28 Score=49.77 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHH-CCCCCChH-HHHHHHHHhhc---------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 005174 494 GRVALKLFEEMNK-NQIKPDHV-TMVAVLSACSH---------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR 561 (710)
Q Consensus 494 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 561 (710)
.+.|+.+|.+... ..+.|+.. .|..+-.++.. .....+|.++-++..+ +.|+ ......+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4566777777662 22455533 33333332211 1123344444444443 3443 4445555555555
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH--HHHHHHHhcCCchHHHHH
Q 005174 562 AGLLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV--LIANMYAATGCWDKLAKV 637 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~ 637 (710)
.|+++.|...|++.. ..|| ...|......+...|+.+.|.+.+++.++++|.....-. ..++.|+.. .+++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 566666666666652 3443 334444445555566666666666666666665433322 222333333 34555554
Q ss_pred H
Q 005174 638 R 638 (710)
Q Consensus 638 ~ 638 (710)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 3
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.17 Score=42.10 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 005174 544 GIFPQLEHFACMVDLYGRAGLLNKAKEIITKM----PYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 544 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~ 594 (710)
.+.|+.....+++.+|+..|++..|+++++.. +++-+...|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 56788888999999999999999999888766 3444688888888554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.16 E-value=5.1 Score=42.15 Aligned_cols=180 Identities=13% Similarity=0.156 Sum_probs=120.2
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--PDHVTMVAVL 520 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll 520 (710)
+...|+..++--.+.|+.+.+.-.|++..-+ -...|--.+.-....|+.+-|..++....+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777777777888888888888877654 2334555555455558888888777766554333 2222333333
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAK---EIITKM-PYTPTSAMWATLLG-----A 590 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~l~~-----~ 590 (710)
+-..|+++.|..+++.+.+. . |+ ...-..-+....+.|+.+.+. +++... +..-+......+.- -
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 45678999999999999886 4 77 444555677788899998888 444443 22222222222221 1
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+...++.+.|..++..+.+..|++...|..+++.....+-
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 3456788889999999999999999999999988876663
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.16 E-value=7.7 Score=44.26 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=56.0
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH----hhccCcHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA----CSHSGLVVEGQKQF 536 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~ 536 (710)
++++.|...+.++. ...|.-.++.--++|.+.+|+.++ +|+...+.-+..+ |...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45555555554444 223333344444555555555553 4454444433333 33344555555555
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHH
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMW--ATLLGACQIHRNTGIGE 601 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~l~~~~~~~g~~~~a~ 601 (710)
+..-+ ..--+.+|..+|++.+|+.+-.++....|...- ..|..-+...++.-+|-
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 44311 122345555666666666666665433333321 34555555555543333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.24 Score=48.94 Aligned_cols=138 Identities=14% Similarity=-0.008 Sum_probs=98.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGL 564 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 564 (710)
.+.|.+.|++..|..-|++.... |. +...-+.++...... .-..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677778888888877776541 11 111111122222111 123357788889999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 005174 565 LNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL-AKVRTCM 641 (710)
Q Consensus 565 ~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 641 (710)
+.+|++..++. . .++|.-.+..-..+|...|+++.|+..++++++++|+|..+...|+.+--+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888876 2 3457777777788999999999999999999999999988888888887777665544 7788888
Q ss_pred HhC
Q 005174 642 RDL 644 (710)
Q Consensus 642 ~~~ 644 (710)
-..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.31 Score=46.35 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHcc---CChhHHHHhHhhCCC---CCCccHHHHHHH
Q 005174 76 SFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASF---SLYNNACFLVENSNI---RYPLPWNLLISL 149 (710)
Q Consensus 76 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~ 149 (710)
.+..|..+|...++...|..-|....+.. ++++..+..+..++... ....++..+|++... .|+.+-..|...
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~ 236 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA 236 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34444444444444444444444444432 33333333333332221 123444445544332 223334444455
Q ss_pred HHhCCCchHHHHHHHHHHh
Q 005174 150 YVRDGFYAEALCVYKQMQS 168 (710)
Q Consensus 150 ~~~~~~~~~A~~l~~~m~~ 168 (710)
+...|++.+|...|+.|.+
T Consensus 237 afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 5556666666666666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.69 Score=39.00 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=44.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP----YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
-.....+.|++++|.+.|+.+. ..| ....--.|+.++...|+++.|...++.++++.|.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3444556788888888887762 222 2344556778888889999999999999999887643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.3 Score=44.51 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777788888888888888888654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.31 Score=42.25 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS----IYGIFPQLEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 551 (710)
....++..+...|++++|+.+.+++.... +-|...|..+|.++...|+..+|.++|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677777888888877777642 33566777778888888888888777776643 3477777544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=11 Score=43.23 Aligned_cols=93 Identities=24% Similarity=0.217 Sum_probs=60.7
Q ss_pred hhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH--HHHHHHHhhccCcHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVT--MVAVLSACSHSGLVVE 531 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~ 531 (710)
.-+|.++|+.++|.+ +|...|+|.+|+.+..+|.. .-|... --.|..-+...++.-+
T Consensus 959 al~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 345666666666654 55667888888888877753 222222 2456666777788777
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 532 GQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
|-++..+..++ ..--+..|++...+++|..+.....
T Consensus 1018 Aa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777766543 3345667788888888888777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.3 Score=42.09 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=85.9
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCh
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATL---LGACQIHRNT 597 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l---~~~~~~~g~~ 597 (710)
.....|++.++..+|+..... .|. ...--.|+.+|...|+.+.|..++..+|..-...-|..+ +....+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 356778999999999988764 444 667778899999999999999999999854444444332 2223333332
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.. ...++.-..-+|+|...-..++..|...|+.++|.+.+-.+..
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2345556677999999999999999999999999987666643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.5 Score=37.59 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA-GLLNKAKEIITKMPYTPTSAMWATLLGAC 591 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~l~~~~ 591 (710)
...++..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+- .+...|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544421 22223333333 5556666655552 2444555555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.40 E-value=6.4 Score=39.75 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=96.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTM-VAVL 520 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 520 (710)
..+|..+++.-.+..-++.|..+|-++.+ +++..++++|..++. |+..-|..+|+-=... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34566677777777788888888887764 367778888877664 6677788888764432 3454433 3455
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRN 596 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~ 596 (710)
.-+...++-+.|+.+|+....+ +..+ ...|..+|+-=..-|++..|..+=++|. .-|...+-..+.+-|....+
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhcc
Confidence 5566778888888888876654 3444 6678888888888888888877766663 33554444444444544433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=8.6 Score=41.08 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGV--EVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
.|.+++|.+++-.+-.+|.. |..+.+.|++-...++++.-- .+. ..-...|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888776643 455566677766666654310 000 0013456777777777777777777765
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITW 379 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (710)
.-... ...+.++.+..+++.-+.+. ..++.+....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 54321 11223333333333222221 2234455555667777777777777776665544332
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 005174 380 NSMLSGYTHLDCAEESAFLFREM 402 (710)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~m 402 (710)
.-+..|...+++.+|.++-+..
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 2244566667777777665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.35 E-value=3.9 Score=39.98 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=75.0
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChHHH---
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-------R--DEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKPDHVTM--- 516 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~--- 516 (710)
+..+..-.+.++++.+.|+...+ + ....+..|...|.+..++++|+-+..+..+ -+++-=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555566666666665432 1 234677777888888888887766665443 1222111122
Q ss_pred --HHHHHHhhccCcHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 517 --VAVLSACSHSGLVVEGQKQFERMTSI---YGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 517 --~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..+--++...|.+..|.+..++..+. .|-.|. .....++.+.|...|+.|.|..-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22334566777777777777665443 244444 556678889999999998887777653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.35 Score=45.43 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKM----PYTP-TSAMWATLL 588 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~ 588 (710)
.|+.-+.. .+.|++..|.+.|....+.|.-.+ ....+..|..++...|++++|..+|..+ |..| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 355667777777777776531111 1233445666666666666666665554 2111 123333344
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
......|+.+.|...++.+.+--|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44444555555555555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.8 Score=35.91 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 243 WNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 243 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
-..++..+.+.+.......+++.+...|. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666677777777777666553 45566777777776553 3334444442 1223334445555655
Q ss_pred cCChHHHHHHHH
Q 005174 323 VGALKLGKEIHG 334 (710)
Q Consensus 323 ~~~~~~a~~i~~ 334 (710)
.+.++.+..++.
T Consensus 82 ~~l~~~~~~l~~ 93 (140)
T smart00299 82 AKLYEEAVELYK 93 (140)
T ss_pred cCcHHHHHHHHH
Confidence 555554444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.79 Score=44.50 Aligned_cols=46 Identities=2% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhccCchHHHH
Q 005174 386 YTHLDCAEESAFLFREMFRSG--VEPNYVTIASILPLCARVANLQHGK 431 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~ 431 (710)
+.+..+.++|+..+.+-..+- ..--..+|..+..+.+..|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 345566666666666554431 1111234444444444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.6 Score=37.19 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+..||-+.--+...|+++.|.+.|+...+....- ..++..-.-++.-.|++.-|.+-+...-+ -.|+.......+-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWLY 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHHH
Confidence 4567777777777888888888888777642221 22222222234566777777665554433 2444222222222
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcC
Q 005174 558 LYGRAGLLNKAKEI-ITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGYYVLIANMYAATG 629 (710)
Q Consensus 558 ~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 629 (710)
.--+.-+..+|..- .++.. .-|..-|...|-.+....-. -+.+++.+.+-..++ .++|..|+.-|...|
T Consensus 175 l~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKIS--EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhcc--HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 22233456666543 34433 34666676665544322211 123334444333332 578999999999999
Q ss_pred CchHHHHHHHHHHh
Q 005174 630 CWDKLAKVRTCMRD 643 (710)
Q Consensus 630 ~~~~A~~~~~~m~~ 643 (710)
..++|..+++....
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.68 Score=43.51 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMV 556 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 556 (710)
.|+.-+..| +.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+.++-.|. ++.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466655544 567799999999999875211 01224455788899999999999999999998777777 68888999
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 005174 557 DLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~ 576 (710)
....+.|+.++|...|++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999998873
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.06 E-value=2.6 Score=44.62 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=69.1
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCChH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFA-CMVDLYGRAGLLNKAKEIITKMPY------TPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~l~~~~~~~g~~~ 598 (710)
....+.+.++++.+... -|+...|. .-...+...|++++|++.|++.-. +-....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 44566777777777654 46643332 334555667777777777775420 112233344555566677777
Q ss_pred HHHHHHHHHHhhCCCCCchHH-HHHHHHHhcCCc-------hHHHHHHHHHHhCC
Q 005174 599 IGEWAAEKLLETRPENSGYYV-LIANMYAATGCW-------DKLAKVRTCMRDLG 645 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~~~ 645 (710)
+|...+..+.+...-....|. ..+-+|...|+. ++|.+++.+.....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 777777777765544444443 444556677777 77777777665443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.12 Score=33.79 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|..+..++.+|.+.|++++|++++++..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.87 E-value=5.5 Score=42.19 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=52.4
Q ss_pred hhhhhcCChhHHHHHHhhcCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh-hcc
Q 005174 455 EMYARSGKVPEAKSVFDLMSRR-------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC-SHS 526 (710)
Q Consensus 455 ~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~ 526 (710)
..+...|++++|.+.|++.... ....+--+.-.+....++++|...|.++.+.. +-+..+|.-+..+| ...
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLML 353 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 3445566666666666654421 23344455666777889999999999998743 33444555444444 345
Q ss_pred CcH-------HHHHHHHHHHHH
Q 005174 527 GLV-------VEGQKQFERMTS 541 (710)
Q Consensus 527 g~~-------~~a~~~~~~~~~ 541 (710)
|+. ++|.++|.++..
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHHH
Confidence 666 667777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.84 E-value=12 Score=40.78 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 005174 561 RAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
+.+++++|+++.++ ..|...|..||+-+...-.+-
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~~ 707 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEFI 707 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHHH
Confidence 33444455554444 568999999998876655443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.78 E-value=10 Score=39.93 Aligned_cols=122 Identities=10% Similarity=0.003 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 005174 344 YENVRNALITMYSRCKDLRHAYILFKMTAEKS---IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPL 420 (710)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 420 (710)
+..+|...++.-.+.|+.+.+.-+|++..-+- ...|-..+.-....|+.+-|..++..-.+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34567777788888888888888888766542 134544444444557777777766665554333222222112223
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
+-..|+...|..+++.+...- +.-..+-..-+.+.-+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 445677777777777777653 222333333344555566666555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.4 Score=35.50 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHH
Q 005174 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGL 317 (710)
Q Consensus 260 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l 317 (710)
++.++.+.+.|+.|+...|..++..+.+.|++.. +..+...++-+|.......+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHH
Confidence 3555666677888888888889999888887544 44555666777766655444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=3.2 Score=42.44 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=62.3
Q ss_pred hhHHHHHHhhcC---CCC---hhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 463 VPEAKSVFDLMS---RRD---EVTYTSLIAGYGIQ---------GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 463 ~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
.+.|..+|.+.. ..| ...|..+..++... ....+|.++-++..+.+ .-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 455666666655 333 44555554444322 12345555555555543 234555555555555556
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCC
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK-MPYTP 579 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p 579 (710)
+++.|...|++... +.|+ ...|........-+|+.++|.+.+++ +...|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 66677777766653 5666 45555555556666777777766666 34444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.1 Score=36.89 Aligned_cols=193 Identities=18% Similarity=0.099 Sum_probs=112.8
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34455555556666666666666655432 2344555555666666667777777776665433321 11222222
Q ss_pred -HhhccCcHHHHHHHHHHHHHHhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 005174 522 -ACSHSGLVVEGQKQFERMTSIYGIFP----QLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT--SAMWATLLGACQI 593 (710)
Q Consensus 522 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~--~~~~~~l~~~~~~ 593 (710)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+.. ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777777633 233 23334444444566777777777776652 2222 4556666666777
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++.+.+...+.......|.....+..++..+...|.++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777776555666666666666667777766665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.4 Score=36.89 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=41.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..-|.+.|....|..-++.+++--|+. .+.+..|..+|...|..++|.+..+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 355778888777777777777766554 44567778889999999999887666543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.72 Score=43.14 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=82.1
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc---------
Q 005174 465 EAKSVFDLMS--RRDEVTYTSLIAGYGIQ-----GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL--------- 528 (710)
Q Consensus 465 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 528 (710)
..++.|..+. ++|-.+|-.++..+..+ +..+-....++.|.+-|+.-|..+|..||..+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 66888888888887654 4566667778899999999999999999987755432
Q ss_pred -------HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 005174 529 -------VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL-NKAKEIITKM 575 (710)
Q Consensus 529 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 575 (710)
-.=+..+++.|... |+.||.++-..|++++++.|.. .+..++.--|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 12367889999664 9999999999999999998864 3444444444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.24 Score=29.90 Aligned_cols=32 Identities=31% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|..+...+...|+++.|.+.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.18 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.+|..+...+...|+++.|...++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.25 E-value=15 Score=39.95 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccC---CchHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 005174 143 WNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMM---DVDFGRVVHSCIDACHEWSLFVHNALVSMY 219 (710)
Q Consensus 143 ~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~g~~~~~~~~~~li~~~ 219 (710)
-..+|.-++..+.+..|+++-+.+...-.+- ...|.....-+.+.. +.+.+..+-+.+.... .+...|..+..--
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 4456788888888888988888775432222 455555555554443 2222333333333112 3445666677767
Q ss_pred HhcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 220 GKFGQVDVARRLFDKMLER--------DAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..+|+.+-|..+++.=+.. +..-+..-+.-+.+.|+.+-...++-.|..
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7789999999888764332 222355566667777777777766666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=38.58 Aligned_cols=95 Identities=18% Similarity=0.027 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHH
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKL 115 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (710)
.....-+..-.+-..|++++|..+|+-+...++.-.. -+..|..+|-..+.++.|...+......+ ..|+...-..
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~a 111 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchH
Confidence 3344444444455666666666666666554322211 23444444445566666666666655544 3444445555
Q ss_pred HHHHHccCChhHHHHhHhh
Q 005174 116 VTFYASFSLYNNACFLVEN 134 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~ 134 (710)
..+|...|+...|+..|..
T Consensus 112 gqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5566666666666666554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.75 Score=40.72 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 557 DLYGRAGLLNKAKEIITKMP--YTP-----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~--~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
+-+.+.|++++|..-|...- .++ ..+.|..-..+..+.+..+.|+..+.++++++|..-.+....+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 33445566666655555431 111 22334444455667788888999999999999988888888899999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 005174 630 CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~ 646 (710)
++++|++-++.+.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999887544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.65 E-value=5.1 Score=33.11 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=72.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.-.|..++..++..+.... .+..-++-+|--....-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456677777777776652 13334444443222222333334444444322111 223444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
..-+-.+. .+....+.-+.+....|.-+.-.+.+..+.+-+..+|+....++.+|.+.|...+|-+++++.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 43333332 233344555667777788777777777776555557888899999999999999999998888887773
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.42 Score=45.82 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 559 YGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
|.++|.+++|+..|.+. ...| |.+++..-..+|.+.+.+..|+.-++.++.++..-...|...+.+-...|+..||.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444455554444332 2333 444444444444444444444444444444443333344444444444444444444
Q ss_pred H
Q 005174 637 V 637 (710)
Q Consensus 637 ~ 637 (710)
-
T Consensus 187 D 187 (536)
T KOG4648|consen 187 D 187 (536)
T ss_pred h
Confidence 3
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.7 Score=45.29 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHH--HHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005174 488 YGIQGEGRVALKLFE--EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (710)
..-+|+++++.++.. ++.. .+ ...-...++.-+.+.|..+.|+++...-..+ .+...++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 344566666555543 1111 11 1333555666666667666666655443332 3445566777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 566 NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 566 ~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
+.|.++.++.. +...|..|...+..+|+++.|++++++... +..|.-+|...|+-+.-.++.
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 77766665543 566777777777777777766666665432 455555666666655444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=21 Score=39.55 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHC-CCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 492 GEGRVALKLFEEMNKN-QIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.+.+.|..++.+.... ++.+... ....+.......+...++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666665432 2222211 2222222222222144555555543221 12333333334444466677776
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 569 KEIITKMPY--TPTSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 569 ~~~~~~m~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
...+..|+. .-...-..-+..+....|+.+.|...++.+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667766641 111122223445545566666666666665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.2 Score=42.41 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred HHHhCCChHHHHHHHH-HHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChH
Q 005174 249 AYASKGLWKEAFQLFV-EMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALK 327 (710)
Q Consensus 249 ~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~ 327 (710)
...-.++++++.++.+ .-.-..++ ..-.+.++..+-+.|..+.|+++..+-..
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------ 323 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------------------ 323 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------------------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------------------
Confidence 3445677777666664 11111121 23366666666667777777666443321
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 005174 328 LGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGV 407 (710)
Q Consensus 328 ~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 407 (710)
-.+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+...
T Consensus 324 -----------------------rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--- 375 (443)
T PF04053_consen 324 -----------------------RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--- 375 (443)
T ss_dssp -----------------------HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----
T ss_pred -----------------------HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---
Confidence 2233345566666665554443 344666666666666666666666655321
Q ss_pred CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHh
Q 005174 408 EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFD 471 (710)
Q Consensus 408 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 471 (710)
+..++-.|...|+.+.-.++.......|. +|....++...|++++..+++.
T Consensus 376 ------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 376 ------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444455555555555555554441 3333333444455555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.09 E-value=5.9 Score=34.28 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=71.9
Q ss_pred HHHHHHHHH---hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 005174 514 VTMVAVLSA---CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLL 588 (710)
Q Consensus 514 ~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 588 (710)
.+...|+.. -...++.+++..++..+.- +.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 3566789999999998874 6887 4445555677889999999999999985 345555566777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
..|.....-..=....+.+++-.++ +.+ ..++..+.+......|
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGAD-PDA-RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccch
Confidence 7776544333345555556665542 333 3344444443333333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.91 E-value=12 Score=35.84 Aligned_cols=28 Identities=11% Similarity=-0.166 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005174 344 YENVRNALITMYSRCKDLRHAYILFKMT 371 (710)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (710)
|...--.|...|...|+.++|.+.+-.+
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555566666666665554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=4.9 Score=33.03 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLL 565 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 565 (710)
++..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|..=+++..+..|-+-. ...|.--...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34455555555555555542 1223445555555555555555555555555543222211 11122222334445555
Q ss_pred HHHHHHHHh
Q 005174 566 NKAKEIITK 574 (710)
Q Consensus 566 ~~A~~~~~~ 574 (710)
+.|..-|+.
T Consensus 132 d~AR~DFe~ 140 (175)
T KOG4555|consen 132 DAARADFEA 140 (175)
T ss_pred HHHHHhHHH
Confidence 555554444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=34.98 Aligned_cols=197 Identities=18% Similarity=0.105 Sum_probs=124.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--C-hhHHHHHHH-HH
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--D-EVTYTSLIA-GY 488 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~-~~ 488 (710)
.+......+...+.+..+...+...............+..+...+...++...+...+...... + ......... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3333444444444444444444444432003344455555556666666677777777665542 1 122333333 67
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKP----DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAG 563 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 563 (710)
...|+++.|...|.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...+
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 888899999999988855 333 2334444444466778899999999888764 233 3677888888888899
Q ss_pred CHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 564 LLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 564 ~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
++++|...+.... ..|+ ...+..+...+...++.+.+...++...+..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999998888773 3343 455555666655667788888899999888886
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.54 E-value=23 Score=39.06 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=38.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh---
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR--- 459 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 459 (710)
...+.-.|+++.|++.+.. ..+...|.+.+...+..+.-.+-.+... ..+.....-.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667888888887766 3344566777666666554332222111 1111111011112345666666665
Q ss_pred cCChhHHHHHHhhcC
Q 005174 460 SGKVPEAKSVFDLMS 474 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~ 474 (710)
..++.+|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 456677777766554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=11 Score=34.61 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCCHHHHH---HHHHH--HHhc-CChHHHHHHHHHHHhhCCCCCch--HHHHHHHH
Q 005174 559 YGRAGLLNKAKEIITKMP---YTPTSAMWA---TLLGA--CQIH-RNTGIGEWAAEKLLETRPENSGY--YVLIANMY 625 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~---~~p~~~~~~---~l~~~--~~~~-g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~ 625 (710)
-+..+++.+|+++|++.. ...+..-|. -++.+ |... .|.-.+.+++++..+++|.-..+ +..|-++.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 356678888888888763 222222222 23322 4443 67667889999999999974333 33444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.3 Score=30.11 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+|..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999998743
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.10 E-value=7.8 Score=32.06 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=70.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
-.|..++..+++.+...+ .+..-++.++--.....+-+-..+.++.+-+- -| ...||++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHHH
Confidence 456666677777666554 24444444444333322222222222221111 11 13455555555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 468 SVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
..+-.+.. +......-+..+...|+-+.-.+++.++.+. -++++.....+..||.+.|+..++.+++.++-++ |+
T Consensus 77 ~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 55544332 3334555677777888888888888887653 4677777788888888888888888888887765 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.71 E-value=5.2 Score=35.24 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC----chHHHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGC----WDKLAKVRTCMR 642 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 642 (710)
+.|..-++.++.++|+...++.+++++|...|. -.+|.+++++..
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 346777888899999999999999999997764 345555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=4.3 Score=35.27 Aligned_cols=116 Identities=13% Similarity=-0.006 Sum_probs=58.9
Q ss_pred HccCChhHHHHhHhhCCCCCCccHHHHH-----HHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHH--HcccCCc
Q 005174 120 ASFSLYNNACFLVENSNIRYPLPWNLLI-----SLYVRDGFYAEALCVYKQMQSRRIRGDNF-TYPSVLKA--CGEMMDV 191 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~ 191 (710)
++.++.++|..-|..+...+--+|-.|. ......|+...|+..|.+.-+....|-.. -...|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 5667778888888777766666655543 34556777788888888776543333322 11111111 1333444
Q ss_pred hHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005174 192 DFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKM 235 (710)
Q Consensus 192 ~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (710)
+......+.+. .+.+.-...-.+|.-+-.+.|++.+|.+.|..+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 33333333333 333333333344444444445555555555444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.34 E-value=3.3 Score=39.96 Aligned_cols=159 Identities=10% Similarity=0.015 Sum_probs=109.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHH----HHHHHhcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACM----VDLYGRAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 565 (710)
.+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.....++++... ..|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 578888888889998875 5667778887888999999999999999988763 56776555443 3344578999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 566 NKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 566 ~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
++|++.-++.- +.| |.=.-.++.......|+..++.+...+-...=.+ -...|-..+-.|...+.++.|+++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988873 333 3334445556677778877777655543321111 13446666777778899999999998
Q ss_pred HHHhCCCcCCCC
Q 005174 640 CMRDLGVRKIPG 651 (710)
Q Consensus 640 ~m~~~~~~~~~~ 651 (710)
.=.-..+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.9 Score=37.18 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
-..+++.+.++..+.-+.-+.|..++.-..-++++...|+|++|.++++.+.+.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 34566777777777777777787777777777778888888888887777665444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.27 E-value=15 Score=34.05 Aligned_cols=21 Identities=10% Similarity=-0.012 Sum_probs=9.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005174 553 ACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~ 573 (710)
......|.+..++++|-..+.
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHH
Confidence 333444455555555444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=8.5 Score=37.33 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=117.0
Q ss_pred hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH----HHHHhhccCcHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA----VLSACSHSGLVVE 531 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~ 531 (710)
-.|+..+|...++++.+. |..+++--=.+|...|+.+.-...+++.... ..||...|.. +.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 468888888888888753 7888998899999999999999999998764 3556543332 2223467899999
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 005174 532 GQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPT-------SAMWATLLGACQIHRNTGIGEWA 603 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~ 603 (710)
|++.-++..+ +.|. .-.-.++...+-..|+..++.++..+-...-+ -.-|.. .-.+...+.++.|.++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999888764 4554 44556788888899999999999988742111 111221 2223445788888888
Q ss_pred HHH--HHhhCCCCCch---HHHHHHHHHhcCCchHHHHH
Q 005174 604 AEK--LLETRPENSGY---YVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 604 ~~~--~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~ 637 (710)
++. +.+++.+|+.. |..+-.+..+...|.+-.++
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 864 34566666533 33344445555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.95 E-value=17 Score=34.14 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=83.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC--CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQI--KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
+..-.+.|++++|.+.|+.+..... +-...+...++.++.+.+++++|...+++....++-.|+.. |...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3445677888888888888886421 11345667777788888899999999888888777777742 33344444411
Q ss_pred -------CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 563 -------GLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 563 -------g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
.+...+.+-|..+ -....+--|.+-+..+-.++..++-.-+++=..+++-|.+-|.|-.|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccCCccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 0111111111111 111111111111222222222222112445567888999999999999
Q ss_pred HHHHHHHhC
Q 005174 636 KVRTCMRDL 644 (710)
Q Consensus 636 ~~~~~m~~~ 644 (710)
.-++.|.+.
T Consensus 188 nR~~~v~e~ 196 (254)
T COG4105 188 NRFEEVLEN 196 (254)
T ss_pred HHHHHHHhc
Confidence 988888764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.94 E-value=20 Score=34.96 Aligned_cols=18 Identities=17% Similarity=-0.217 Sum_probs=11.4
Q ss_pred HHhcCChHHHHHHHHHHH
Q 005174 591 CQIHRNTGIGEWAAEKLL 608 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~ 608 (710)
+.+.++++.|.+.++..+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456667777776666544
|
It is also involved in sporulation []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.2 Score=41.14 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+...+..|+.-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 456666777777777766554 345 6667766666777766666555544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.63 E-value=28 Score=36.14 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=26.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHH
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERM 539 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 539 (710)
+..+.-+.|+.++|++.|++|.+..-. -+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344444555555555555555442111 11223444555555555555555555543
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.55 E-value=2.1 Score=41.01 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=58.7
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIKPDHVTMVA 518 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 518 (710)
..++..++..+..+|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345777888888888888888888887743 667888899999999998888888887765 577777766665
Q ss_pred HHHH
Q 005174 519 VLSA 522 (710)
Q Consensus 519 ll~a 522 (710)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.54 E-value=9.5 Score=34.18 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCC--CCC----hhH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGI--FPQ----LEH 551 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~----~~~ 551 (710)
.+..+...|.+.|+.+.|++.|.++.+....|... .+..+|..+...+++..+.....++...... .++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666666677777777777766654444432 3455566666666766666666665443111 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
|..+. +...+++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.41 E-value=26 Score=35.51 Aligned_cols=149 Identities=8% Similarity=-0.094 Sum_probs=75.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEH 551 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 551 (710)
...+|..++..+.+.|+++.|...+.++...+... ++.....-.......|+-.+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44577778888888888888888888877643211 2223333334455667777887777776652 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEI-ITKMPYTPTSAMWATLLGACQIH------RNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...++.+.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222223333 777778888888889988887777777776
Q ss_pred HHhc
Q 005174 625 YAAT 628 (710)
Q Consensus 625 ~~~~ 628 (710)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.72 Score=27.77 Aligned_cols=31 Identities=19% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+|..+...+...|+++.|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666667777777777777777777664
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.36 E-value=2.4 Score=35.89 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=47.4
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
...++.+.++..+.-+.-+.|+.++.-.+-+.++...|+|+||.+++....+.+..
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 34788888888888888899999999899999999999999999998888766553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.97 E-value=12 Score=31.75 Aligned_cols=88 Identities=9% Similarity=0.009 Sum_probs=59.3
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
..+...+-.-.....+.|++++|.+.|+.+...=+...-...+-..++.++-..++++.|...++..++.+......-|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 33444444455556788999999999999987644333333466778888888899999999998888886333334455
Q ss_pred HHHHHHHc
Q 005174 114 KLVTFYAS 121 (710)
Q Consensus 114 ~l~~~~~~ 121 (710)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 44544443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.98 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMN 505 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (710)
+|+.|...|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777776643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.66 E-value=3.2 Score=37.14 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHh
Q 005174 36 MRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIAL 103 (710)
Q Consensus 36 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 103 (710)
-+..+..+..-|.+.|+.++|++.|.+++.....+......+..+++.+...+++..+......+...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999988888777778888999988889988887776666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.64 E-value=17 Score=37.56 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=26.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPE--NSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
|...+++.|+.++|.+.++.+++..|. +...+..|+.+|...+++.|+..++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 444444555555555555555444432 233444555555555555555555444
|
The molecular function of this protein is uncertain. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=3.4 Score=39.70 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+.|-.+|.+.++++.|.++.+.++.+.|+++.-+--.|-+|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345667788899999999999999999999998888899999999999999887776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.69 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~ 569 (710)
+.|+ ...|+.+..+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4676 777888888888888888775
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.84 E-value=18 Score=31.75 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=14.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 164 KQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 164 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
+.+.+.|+.|+...+..+++.+.+.|..
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334445555555555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.51 E-value=13 Score=36.52 Aligned_cols=134 Identities=10% Similarity=0.154 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--cC----chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPLCAR--VA----NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+...+-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44566777888888887777776654433322 11 23444555555555442211
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCChH--HHHHHHHHhhccCc--HHHHHHHHH
Q 005174 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGE----GRVALKLFEEMNKNQIKPDHV--TMVAVLSACSHSGL--VVEGQKQFE 537 (710)
Q Consensus 466 A~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~ 537 (710)
.++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ..+.++.-+..... +.++.++++
T Consensus 138 ---------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~ 206 (297)
T PF13170_consen 138 ---------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYN 206 (297)
T ss_pred ---------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 0122233333322 1122 355677888888877766533 33334433322222 456778888
Q ss_pred HHHHHhCCCCChhHHHHHHH
Q 005174 538 RMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 538 ~~~~~~~~~p~~~~~~~li~ 557 (710)
.+.+. |+++...+|..+.-
T Consensus 207 ~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 207 ALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHc-CCccccccccHHHH
Confidence 88776 88888777765543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.29 E-value=5.7 Score=38.12 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh-----hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCcee
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE-RDA-----VSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVI 276 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 276 (710)
.|.+....+...++..-....+++++...+-++.. |+. .+-.++++-+ -.-+.++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 44555555556666666656777777777766632 211 0111222222 2335668888888878888888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005174 277 TWNTIAGGCLRTGNFKGVLELLSRMRTQE 305 (710)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 305 (710)
+++.+|+.+.+.+++.+|..+.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877776554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.7 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHHcCc
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKDAGY 693 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~~g~ 693 (710)
....++-++.+.|++++|.+..+.+.+ .+|+......+...+.+.|++.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 345678889999999999999888774 567777777777778888888774
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.46 E-value=28 Score=35.27 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----NSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
....+|..+...++++|+++.|..++..+...++. .+.....-+..+...|+-.+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35568889999999999999999999999886532 467778889999999999999998887765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=36 Score=33.17 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCA----EESAFLFREM 402 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m 402 (710)
..+....+..+...|..+....+..-...+|...-..-+.++.+.|+. .++...+..+
T Consensus 37 ~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 37 SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 333334444444444332222222222333444444444445555542 3445555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.54 E-value=1.3 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
.....++.++...|++++|.+++.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988754
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.49 E-value=31 Score=32.12 Aligned_cols=145 Identities=13% Similarity=0.099 Sum_probs=84.8
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChH---HHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP---DHV---TMVAV 519 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~---t~~~l 519 (710)
-...++.-..+|..+|.++-|-..+++.-+ ...+-++++|+++|++...- +.- +.. .+..+
T Consensus 90 vvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 90 VVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-HhccchHHHHHHHHHHh
Confidence 345567777788888888877766665321 22345677777777775542 111 111 23333
Q ss_pred HHHhhccCcHHHHHHHHHHHHHH---hCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---C---CCCCHHHHHHHHH
Q 005174 520 LSACSHSGLVVEGQKQFERMTSI---YGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---P---YTPTSAMWATLLG 589 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~---~~p~~~~~~~l~~ 589 (710)
-..+.+...+++|-..+.+-... ..-.|+ -..|-+.|-.|.-..++..|.+.++.- + .+-+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 34455666677666555443211 011233 234566677777788999999999884 3 2235677788888
Q ss_pred HHHhcCChHHHHHHH
Q 005174 590 ACQIHRNTGIGEWAA 604 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~ 604 (710)
+|- .||.+....++
T Consensus 237 ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AYD-EGDIEEIKKVL 250 (308)
T ss_pred Hhc-cCCHHHHHHHH
Confidence 874 56666555443
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.47 E-value=19 Score=38.98 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH----------HHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCC
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYV----------TIASILPLCARVANLQHGKEFHCYILR-RAMFNE 445 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 445 (710)
.+-..++-.|....+++..+++.+.+... ||.. .|.-.++---+-|+-++|..+.-.+++ .|.+.|
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34556677788888888888888888763 4332 233333333455677777766555544 443444
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---HHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV---TMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a 522 (710)
++||-||++ |+.|- +-+.|...+..+.|.++|++.-+ +.|+.. .+..|+.+
T Consensus 279 ---------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 ---------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred ---------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 356777764 22221 12334555667788888988776 567654 34444443
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
-.+ .++...++ .. +--.|-..++|.|.+++-.++|+-. ..+.+-...+|+.++.+
T Consensus 333 aG~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHH
Confidence 322 12222211 11 1112445678899888887777653 23344455688888999
Q ss_pred HHHHHHhhCCCC
Q 005174 603 AAEKLLETRPEN 614 (710)
Q Consensus 603 ~~~~~~~~~p~~ 614 (710)
+.+.+.+++|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999998865
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.23 E-value=1.9 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNK 506 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (710)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.1 Score=26.82 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
..|..++.+|...|++++|.+.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.87 E-value=13 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 005174 191 VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG 270 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 270 (710)
.++|..|-+.+.........+--.-+..+.+.|++++|..+.+.++.||...|-+|-. .+.|..+.+...+.+|..+|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 4566666666652222233333344455677888888888888888888888877654 35666666666666666554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.84 E-value=9.1 Score=36.81 Aligned_cols=96 Identities=11% Similarity=0.131 Sum_probs=69.4
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.+....+...++..-....+++++...+-++... ...+|-.++ ..-++++++.++..=+.-|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccch
Confidence 3444445555666555667788888877776632 233333333 234677999999888889999999
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
.++..+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999998887777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.94 E-value=24 Score=30.16 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=48.0
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh-cCC
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTP-TSAMWATLLGACQI-HRN 596 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~-~g~ 596 (710)
...++.+++..+++.|.- +.|+ ...-..-...+.+.|++++|+.+|++....+ ....-..|+..|.. .||
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 347889999999998874 6777 4444445666788999999999999986433 43444455555543 344
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.18 E-value=45 Score=32.82 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHH
Q 005174 157 AEALCVYKQMQSRRIRGDNFTYPSVL 182 (710)
Q Consensus 157 ~~A~~l~~~m~~~g~~p~~~t~~~ll 182 (710)
++.+.+++.|.+.|..-+.++|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHH
Confidence 45566788888888887777765543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.10 E-value=42 Score=31.66 Aligned_cols=232 Identities=17% Similarity=0.197 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHhcCC----CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCcHHHHHHHHHHHhccC
Q 005174 358 CKDLRHAYILFKMTAE----KS---IITWNSMLSGYTHLDCAEESAFLFREMFRS---GV--EPNYVTIASILPLCARVA 425 (710)
Q Consensus 358 ~g~~~~A~~~~~~~~~----~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~ 425 (710)
..+.++|..-|+.+.+ +. --+.-.+|..+.+.+++++....+++|..- .+ .-+..+.+++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666665543 11 223445677778888888888777777531 11 234456777777766666
Q ss_pred chHHHHHHHHHHHHh----CCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---------------ChhHHHHHHH
Q 005174 426 NLQHGKEFHCYILRR----AMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---------------DEVTYTSLIA 486 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~ 486 (710)
+.+.-..+++.-++. ..-..-..+-+.|...|...|.+.+-.+++.++.+. -...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555443321 101222334456777787888888877777766421 1236777788
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHhCC--CCCh---hHHHHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQ-IKPDHVTMVAVLSACS-----HSGLVVEGQKQFERMTSIYGI--FPQL---EHFACM 555 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~l 555 (710)
.|...++-.+...+|++...-. --|.+ ....+|+-|. +.|.+++|..-|-++.+.|.- .|.. --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888766522 23333 4445666663 567888877555454443322 2331 235667
Q ss_pred HHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005174 556 VDLYGRAGL----LNKAKEIITKMPYTPTSAMWATLLGACQIH 594 (710)
Q Consensus 556 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~ 594 (710)
.+++.+.|- -++|. -....|.......|+.+|..+
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHhcc
Confidence 778877761 12221 012346677778888888643
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.35 E-value=11 Score=29.66 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+..+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 455666667777788999999999999999999999999999998763 333447776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.26 E-value=17 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.001 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLNK---AKEIITKMP--YTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~--~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.++..+-..+..++.+..+.++ -+.++++.- ..| +.....-|.-+|.+.|+++++.+.++.+++++|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5666666677777777665443 455555541 223 22333345556777888888888888888888765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.19 E-value=86 Score=34.62 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=61.9
Q ss_pred HHHHHccCChhHHHHhHhhCCCCCC-----ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC
Q 005174 116 VTFYASFSLYNNACFLVENSNIRYP-----LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD 190 (710)
Q Consensus 116 ~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 190 (710)
++.+.+.+.+++|+++.+.....-. ..+...|..+.-.|++++|-.+.-.|... +..-|..-+.-+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 5667778888999888877553222 24788888888999999998888888653 44455555555544443
Q ss_pred chHHHHHHHHHHhcCC-ChHHHHHHHHHHHHh
Q 005174 191 VDFGRVVHSCIDACHE-WSLFVHNALVSMYGK 221 (710)
Q Consensus 191 ~~~a~~~~~~~~~g~~-~~~~~~~~li~~~~~ 221 (710)
.. .+...+..|.+ .+..+|..++..+..
T Consensus 439 l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 32 22222222222 456667666666655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.59 E-value=13 Score=28.83 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+.-++.+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+-| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666667777777889999999999999999999999999998876522 24445665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.52 E-value=55 Score=31.93 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHhhcCC--CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHH
Q 005174 211 VHNALVSMYGKFGQVD---VARRLFDKMLE--RD-AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGG 284 (710)
Q Consensus 211 ~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 284 (710)
+...|+.+|...+..+ +|..+++.+.. ++ ...+-.-+..+.+.++.+++.+.+.+|... +.-....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHH
Confidence 4455666666655543 33444444411 22 334444455555566677777777777654 22233445544444
Q ss_pred HHh--cCChHHHHHHHHHHHhCCCCCC
Q 005174 285 CLR--TGNFKGVLELLSRMRTQETYLD 309 (710)
Q Consensus 285 ~~~--~g~~~~a~~~~~~m~~~~~~p~ 309 (710)
+.. ......+...+..+....+.|.
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 421 1223445555555544433333
|
It is also involved in sporulation []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.35 E-value=17 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=22.7
Q ss_pred hhccCcHHHHHHHHHHHHHHh----CCCCC-hhHHHHHHHHHHhcC
Q 005174 523 CSHSGLVVEGQKQFERMTSIY----GIFPQ-LEHFACMVDLYGRAG 563 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g 563 (710)
+++.....++..+++...+++ .+.|+ ...+.++..+|...+
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 333334344444444443332 46888 678888888887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.34 E-value=2.7 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
.+.-++.+.|+++.|.+..+.+++++|++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556789999999999999999999998744
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.96 E-value=1.7e+02 Score=37.16 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+|-.....++..|.++.|..++-.+.+.. -++.+.-.+..+...|+-..|+.+++...+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 5689899999999999999988877777666 478999999999999999999999998876544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.68 E-value=8.2 Score=37.11 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
.++..++..+..+|+.+.+.+.+++.- .. -|...|..++.+|.+.|+...|+.+++.+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 356677777777777777777777662 22 36777777777777777777777777776654
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.59 E-value=43 Score=30.12 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHCCCCCChHHHHH--HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH-----HHHHHHHhcCCHHHH
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVA--VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKA 568 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 568 (710)
+.....+++....-+..-.++.+ +-..+...+++++|...++..... |..+.+. .|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555566654321211112222 334567788999999888876542 3333333 455677889999999
Q ss_pred HHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 569 KEIITKMPYTPTSAM--WATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
+..++.... ++-.. ...-..++...|+.+.|+..+++.++.+++.
T Consensus 146 L~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999998652 22222 2233366888999999999999999887543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.58 E-value=1.6 Score=37.63 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=61.9
Q ss_pred HHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchH
Q 005174 79 HIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAE 158 (710)
Q Consensus 79 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 158 (710)
.++..+...+.+.....+++.+++.+...+....+.++..|++.++.+...++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666666777777778888888766566678888999999998888888888874333 445667777777788888
Q ss_pred HHHHHHHHH
Q 005174 159 ALCVYKQMQ 167 (710)
Q Consensus 159 A~~l~~~m~ 167 (710)
|.-+|.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 877777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.45 E-value=3.2 Score=24.83 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988765
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.28 E-value=3 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++..|+.+|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4578899999999999999999887754
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.28 E-value=12 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.4
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 574 ~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+...|++.+..+.+.||++.+|+..|.+.++-+.....+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3456789999999999999999999999999988876655544665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.26 E-value=26 Score=27.43 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 005174 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSG 406 (710)
Q Consensus 327 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 406 (710)
++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-++... +.|..+++..-+..|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4444444444433311 222222334556788999999999999988999999887654 6677777777777787776
Q ss_pred CCCcHHHHH
Q 005174 407 VEPNYVTIA 415 (710)
Q Consensus 407 ~~p~~~t~~ 415 (710)
.|...+|.
T Consensus 99 -~p~lq~Fa 106 (115)
T TIGR02508 99 -DPRLQTFV 106 (115)
T ss_pred -CHHHHHHH
Confidence 55544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.24 E-value=1e+02 Score=34.18 Aligned_cols=218 Identities=18% Similarity=0.132 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch-------HHHHHHHHHH-hcCCChHH--
Q 005174 141 LPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD-------FGRVVHSCID-ACHEWSLF-- 210 (710)
Q Consensus 141 ~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-------~a~~~~~~~~-~g~~~~~~-- 210 (710)
..-=++|-.|.|.|++++|.++..+.... .......|...+..+....+-. ....-+.... .....|++
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 33446778889999999999998666543 5566678888899887653322 2333333333 22222443
Q ss_pred -HHHHHHHHHHhcCCHHHHH-HHHhhcCCCChhHHHHHHHHHHhCCC---------hHHHHHHHHHHHHcCCCCceehHH
Q 005174 211 -VHNALVSMYGKFGQVDVAR-RLFDKMLERDAVSWNTMISAYASKGL---------WKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 211 -~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
+|..+ ++|.-...-. .++..+ +-..|-.|.-.-..... .++..+.+.+.-+.-..+ ....-
T Consensus 191 AvY~il----g~cD~~~~~~~~V~~ti---ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~ 262 (613)
T PF04097_consen 191 AVYKIL----GRCDLSRRHLPEVARTI---EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPL 262 (613)
T ss_dssp HHHHHH----HT--CCC-S-TTC--SH---HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------
T ss_pred HHHHHH----hcCCccccchHHHhCcH---HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHH
Confidence 33333 2222111000 000000 11223333221111110 112222222221111222 11222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHh-
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYENVRNALITMYSR- 357 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~~~~- 357 (710)
.....+.-.|+++.|++++-+ ..+...|.+.+.+.+..+.-..-..... ..++.... .+...-+..||..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344566778999999999887 3445566777777776655433222211 11111110 1111235566666665
Q ss_pred --cCCHHHHHHHHHhcC
Q 005174 358 --CKDLRHAYILFKMTA 372 (710)
Q Consensus 358 --~g~~~~A~~~~~~~~ 372 (710)
..+..+|...|-.+.
T Consensus 338 F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 338 FEITDPREALQYLYLIC 354 (613)
T ss_dssp TTTT-HHHHHHHHHGGG
T ss_pred HhccCHHHHHHHHHHHH
Confidence 345666666665443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.15 E-value=1e+02 Score=34.19 Aligned_cols=172 Identities=13% Similarity=-0.032 Sum_probs=76.7
Q ss_pred CCCCCcchhhhhHHHHHHHHH-hCCCchHHHHHHHHhHHhCCCCCch---hhHHHHHHHHhcccCchHhHHHHHHHHHHh
Q 005174 28 QPINNEHIMRINLLETLKDFA-GRGNLSKAFEAFTRIRITAASHDVV---LDSFAHIIFCCGKVKALAQGKQLHACAIAL 103 (710)
Q Consensus 28 ~~~~~~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 103 (710)
+....|.....+...+.+.|. .+.+++.|...+++.....-+++-. ..+-..+++.+.+.+... |....+..++.
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 333334444455555555555 6777778877777654433222211 001122334444433333 66666665554
Q ss_pred CCC----CCCchhhHH-HHHHHccCChhHHHHhHhhCC-----CCCC--ccHHHHHHHH--HhCCCchHHHHHHHHHHhC
Q 005174 104 GLE----KNPVLVPKL-VTFYASFSLYNNACFLVENSN-----IRYP--LPWNLLISLY--VRDGFYAEALCVYKQMQSR 169 (710)
Q Consensus 104 ~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~li~~~--~~~~~~~~A~~l~~~m~~~ 169 (710)
--. +-...+..+ +..+...++...|...++.+. +.|. ..+-.++.+. .+.+..+++++..+++...
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 211 111222222 222223367777777766542 1122 1222222222 2345556666666655322
Q ss_pred CC---------CCCcccHHHHHHHH--cccCCchHHHHHHHH
Q 005174 170 RI---------RGDNFTYPSVLKAC--GEMMDVDFGRVVHSC 200 (710)
Q Consensus 170 g~---------~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~ 200 (710)
.. .|-..+|..+++.+ ...|+++.++.....
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 12333555555554 334554455444433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 6e-11
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 8/123 (6%)
Query: 213 NALVSMYGKFGQVDVARRLFDKMLER-------DAVSWNTMISAYASKGLWKEAFQLFVE 265
A Q+ +A L + +N ++ +A +G +KE +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 266 MQEEGVEVNVITWNTIAGGCLRTGNFKGVLE-LLSRMRTQETYLDSVATVIGLGACSHVG 324
+++ G+ +++++ R G +E L +M + L ++ T + L
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 325 ALK 327
LK
Sbjct: 251 VLK 253
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.7 bits (153), Expect = 2e-10
Identities = 26/210 (12%), Positives = 63/210 (30%), Gaps = 8/210 (3%)
Query: 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYI 437
L L + + L ++ P +A +L +L +
Sbjct: 59 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPS-GQ 117
Query: 438 LRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-------DEVTYTSLIAGYGI 490
+A + + + + ++P A + + + Y +++ G+
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 491 QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550
QG + + + + + PD ++ A L ++ S G+ Q
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 551 HFACMVDLYGRAGLLNKAKEIITKMPYTPT 580
A ++ RA +L ++ P
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 1e-08
Identities = 19/158 (12%), Positives = 48/158 (30%), Gaps = 9/158 (5%)
Query: 165 QMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVV----HSCIDACHEWSLFVHNALVSMYG 220
Q ++ G + K C + + H +L ++NA++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 221 KFGQVDVARRLFDKMLER----DAVSWNTMISAYASKGLWKEAFQ-LFVEMQEEGVEVNV 275
+ G + + + D +S+ + + + +M +EG+++
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVAT 313
+ + R K V ++ V T
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 3e-05
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 11/176 (6%)
Query: 349 NALITMYSRCKDLRHAYILFKMTAEK-------SIITWNSMLSGYTHLDCAEESAFLFRE 401
A L A+ L + + ++ +N+++ G+ +E ++
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 402 MFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461
+ +G+ P+ ++ A+ L R E + + L L+ R+
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 462 KVPEAKSVFDLMSRR----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH 513
+ V S V + L+ + KL + Q +
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 67/552 (12%), Positives = 137/552 (24%), Gaps = 210/552 (38%)
Query: 28 QPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGK- 86
Q ++ R+ L+ +A +R + +V++ + GK
Sbjct: 124 QVFAKYNVSRLQPYLKLR------------QALLELR---PAKNVLI----DGVLGSGKT 164
Query: 87 --VKALAQGKQLHACA------IALGLEKNPVLVPK-LVTFYASFSLYNNACFLVENS-N 136
+ ++ + L +P V + L N ++S N
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSN 222
Query: 137 IRYPLPW-NLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKA----C------ 185
I+ + + ++ Y L V N A C
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVL----------LNVQNAKAWNAFNLSCKILLTT 272
Query: 186 --GEMMD-VDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVS 242
++ D + H +D H + + S+ K+ + L R+ ++
Sbjct: 273 RFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRP------QDLPREVLT 324
Query: 243 WN----TMISAYASKGL-----WK--------EAFQLFVEMQEEGV-------------E 272
N ++I+ GL WK + + + E
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 273 VNV------ITWN--------TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLG 318
++ + W + + L+ + + T +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTI--------SI- 428
Query: 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS--RCKDLRHA-------YILFK 369
L+L ++ + +++ Y+ + D Y
Sbjct: 429 ---PSIYLELKVKLENEY---------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 370 MTAEKSIITWNSMLSGYTHLDCAE--ESAFLFREMF-----------RSGVEPN------ 410
+ G+ HL E E LFR +F N
Sbjct: 477 I--------------GH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 411 -----------YVT------------IASILPLCARVANLQHGKEFHCYILRRAMFNEHL 447
Y+ I LP NL K + +LR A+ E
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSK--YTDLLRIALMAED- 576
Query: 448 LLWNSLVEMYAR 459
++ E +
Sbjct: 577 ---EAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 8e-04
Identities = 73/554 (13%), Positives = 150/554 (27%), Gaps = 208/554 (37%)
Query: 189 MDVDFGRVVHSCIDA-------------CHEWSLFVHNALVS-----MYGKFGQVDVARR 230
MD + G + D C + + L + V R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 231 LFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGN 290
LF +L SK +E Q FV EE + +N +
Sbjct: 67 LFWTLL---------------SKQ--EEMVQKFV---EEVLRINY-KF------------ 93
Query: 291 FKGVLELLSRMRTQ-----------ETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRG 339
L+S ++T+ D + + A +V L+
Sbjct: 94 ------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----------- 136
Query: 340 CYGEYENVRNALITMYSRCKDLRHA-YI-LFKMT-AEKSI------------------IT 378
Y +R AL +LR A + + + + K+ I
Sbjct: 137 ----YLKLRQAL-------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 379 WNSMLSGYTHLDCAEESAFLFREM---FRSGVEPNYVTIASI---LPLCARVANLQHGKE 432
W ++ C L EM ++PN+ + + + L + +
Sbjct: 186 WLNL--KN----CNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKL-----RIHSIQA 232
Query: 433 FHCYILRRAMFNEHLL----LWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTS 483
+L+ + LL + N+ K A F+L + R
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNA---------KAWNA---FNLSCKILLTTRF----KQ 276
Query: 484 LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA-VLS---------ACSHSGLVV--- 530
+ ++L + + + +++ L + + +
Sbjct: 277 VTDFLSAATTTHISL---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 531 -----EG--------QKQFERMTSIYGIFPQLEHF--ACMVDLYGRAGLLNKAKEIITKM 575
+G +++T+I L A ++ R + + +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPS----AHI 387
Query: 576 PYTPTSAMWATLLG------ACQIHRNTGIGEWAAEK-------LLETRPENSGYYVL-- 620
P S +W ++ ++H+ + + + E LE + + Y L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 621 -IANMYAATGCWDK 633
I + Y +D
Sbjct: 448 SIVDHYNIPKTFDS 461
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.49 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.44 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.42 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.02 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.81 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.69 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.68 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.58 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.43 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.26 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.26 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.25 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.25 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.17 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.92 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.72 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.66 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.57 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.44 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.43 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.37 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.27 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.21 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.11 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.87 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.84 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.81 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.77 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.64 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.2 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.84 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.51 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.25 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.91 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.17 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.46 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.0 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.37 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 85.05 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.87 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.84 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.63 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.07 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.35 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.31 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.48 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=367.53 Aligned_cols=500 Identities=11% Similarity=-0.024 Sum_probs=366.9
Q ss_pred HHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHH
Q 005174 119 YASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVH 198 (710)
Q Consensus 119 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 198 (710)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677888888899988888999999999999999999999999999985 5678888999999999999999999998
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 199 SCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 199 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
+.+. ..+++..+++.++.+|.++|++++|.++|+++...+.. ..++.+.+. ...|..++..+|
T Consensus 141 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~ 203 (597)
T 2xpi_A 141 TKED-LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLM-----------QDGGIKLEASMC 203 (597)
T ss_dssp HHTC-GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHHHH
T ss_pred HHHh-ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----ccccccccc-----------cccccchhHHHH
Confidence 8765 23678889999999999999999999999964332200 000000000 112233444555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-HHHHHHHHhhccCCh--HHHHHH-HHHHHhhcCCCchhHHHHHHHH
Q 005174 279 NTIAGGCLRTGNFKGVLELLSRMRTQETYLDSV-ATVIGLGACSHVGAL--KLGKEI-HGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~~~~~~~~--~~a~~i-~~~~~~~~~~~~~~~~~~li~~ 354 (710)
+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+...+...+.. +....+ +..+...+......+++.++..
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 555555555555555555555555432 2222 222222222111111 111111 3344444445555667777888
Q ss_pred HHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKE 432 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 432 (710)
|.+.|++++|.++|+++.+ +++.+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|++++|..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999998877 688889999999999999999999999988765 3366778888888899999999999
Q ss_pred HHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 433 FHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
++..+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 361 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999888664 6678888999999999999999999998775 3467789999999999999999999999988753
Q ss_pred CCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-
Q 005174 510 KPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKM-------PYTPT- 580 (710)
Q Consensus 510 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~- 580 (710)
+.+..+|..++.+|.+.|++++|.++|+++.+. .| +..+|+.++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 347788888999999999999999999998865 34 4788999999999999999999999887 34676
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 581 -SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 581 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
..+|..++.+|...|+++.|...++++++++|+++..|..++.+|.+.|++++|.+.++++.+...
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 788999999999999999999999999999999999999999999999999999999988876543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=357.70 Aligned_cols=459 Identities=10% Similarity=-0.021 Sum_probs=341.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 005174 153 DGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLF 232 (710)
Q Consensus 153 ~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (710)
.|.+..+...+..+. .++...|+.++..|.+.|+++.|..+++.+. +..|+..++..++.+|.+.|++++|..+|
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVL-DITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 344444444444332 2355566666666666666666666666665 22234455666666666666666666666
Q ss_pred hhc--CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 005174 233 DKM--LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDS 310 (710)
Q Consensus 233 ~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 310 (710)
+.+ ..++..+|+.++.+|.+.|++++|.++|+++ .|+.. ...++.+.++ ...+..++.
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~~~~~-----------~~~~~~~~~ 200 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRK----DEKNANKLLM-----------QDGGIKLEA 200 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------C-----------CCSSCCHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCccc----cccccccccc-----------cccccchhH
Confidence 666 3346666666666666666666666666532 11110 0000101000 123455678
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHH--H-HHhcCCC----ChhHHHHHH
Q 005174 311 VATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYI--L-FKMTAEK----SIITWNSML 383 (710)
Q Consensus 311 ~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~----~~~~~~~li 383 (710)
.++..+..++.+.|++++|...++.+.+.+ +.+...+..+...+...+..+.+.. + |..+... ....|+.++
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 899999999999999999999999999875 3455566667666654443332221 1 3333332 335677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV 463 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 463 (710)
..|.+.|++++|..+|+++.+. .++..++..++.++.+.|++++|..+++.+.+.+ +.+..+++.++.+|.+.|++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCH
Confidence 8999999999999999999876 5899999999999999999999999999999886 55788899999999999999
Q ss_pred hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 464 PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 464 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
++|..+|+++.+ .+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 478899999999999999999999999998742 2357799999999999999999999999998
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh------C
Q 005174 541 SIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET------R 611 (710)
Q Consensus 541 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 611 (710)
+. .| +..+|..++.+|.+.|++++|.++|+++. .+.+..+|+.++..|...|++++|.+.++.+.++ +
T Consensus 435 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 435 RL---FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HT---TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred Hh---CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 64 45 58899999999999999999999999983 3457899999999999999999999999999988 5
Q ss_pred CCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 612 PEN-SGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 612 p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
|++ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 554 6789999999999999999999999988755
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-25 Score=226.60 Aligned_cols=370 Identities=11% Similarity=0.039 Sum_probs=258.2
Q ss_pred HHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHH
Q 005174 217 SMYGKFGQVDVARRLFDKML--ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKG 293 (710)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 293 (710)
..+.+.|++++|...|+.+. .| +...+..+...+.+.|++++|...++...+. .+.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHH
Confidence 34555666777766666652 22 3445555556666667777777666666553 23345566666667777777777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 005174 294 VLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE 373 (710)
Q Consensus 294 a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (710)
|+..|+++.... |+. ...+..+..+|.+.|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~--p~~----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRLK--PDF----------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHC--TTC----------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--cch----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766665532 221 12233344444444444444444443321
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 374 ---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 374 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
.+...+..+...+...|++++|...|+++.+.. +-+..++..+...+...|+++.|...++.+++.. +.+...+
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 206 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAY 206 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 122344455555555566666666666555542 2234555555556666666666666666666653 4556677
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhcc
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHS 526 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 526 (710)
..+...+...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+...+.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 788888888888888888888664 236778899999999999999999999999985 34 466888999999999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAA 604 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 604 (710)
|++++|...|+++.+. ...+...+..+..++.+.|++++|.+.++++. ..| +..+|..+..++...|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999875 23348889999999999999999999999873 334 6788999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 605 EKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 605 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
+++++++|+++..|..++.+|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=251.24 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=152.6
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC---------chHHHHHHHHHH-hcCCChHHH
Q 005174 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD---------VDFGRVVHSCID-ACHEWSLFV 211 (710)
Q Consensus 142 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~-~g~~~~~~~ 211 (710)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|+..+. ++.|..+++.|. .|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4788899999999999999999999999999999999999999987654 466788888888 888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 212 HNALVSMYGKFGQVDVARRLFDKM----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
||+||.+|++.|++++|.++|++| ..||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 888888888888888888888888 3468888888888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhc
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSH 322 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~ 322 (710)
.|++++|.++|++|++.|..|+..||+.++..+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888777776654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=226.08 Aligned_cols=368 Identities=11% Similarity=0.083 Sum_probs=299.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCc-eehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEGVEVN-VITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 326 (710)
..+.+.|++++|.+.+.++.+. .|+ ...+..+...+.+.|++++|..+++...
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~------------------------ 60 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI------------------------ 60 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 3445566666666666665543 222 2334444445555555555555555443
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMF 403 (710)
Q Consensus 327 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 403 (710)
+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..+..++.+.|++++|+..|+++.
T Consensus 61 -----------~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 61 -----------KQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp -----------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -----------hcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 322 45566788899999999999999999987653 356689999999999999999999999999
Q ss_pred HcCCCCc-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-Chh
Q 005174 404 RSGVEPN-YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEV 479 (710)
Q Consensus 404 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~ 479 (710)
+.. |+ ...+..+...+...|++++|...+..+++.. +.+..+++.+...|.+.|++++|...|+++.+ | +..
T Consensus 129 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 204 (388)
T 1w3b_A 129 QYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204 (388)
T ss_dssp HHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 864 54 4456667778888999999999999999875 66788999999999999999999999998863 3 567
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
.|..+...+...|++++|+..|++..+. .| +..++..+...+...|++++|...|+++.+ +.|+ ...|..+..
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHH
Confidence 8999999999999999999999999874 45 467888999999999999999999999986 4676 788999999
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
+|.+.|++++|.+.++++. .+++..+|..+...+...|+++.|...+++++++.|+++..|..++.+|.+.|++++|.
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999883 34578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHH
Q 005174 636 KVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688 (710)
Q Consensus 636 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 688 (710)
+.++++.+ .+|....++..+..+..+|
T Consensus 360 ~~~~~a~~--------------------------~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 360 MHYKEAIR--------------------------ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh--------------------------hCCCCHHHHHhHHHHHHHc
Confidence 99998874 3455667777777665544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=244.21 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHhCCCCCCcc-cHHHHHHHHcccCCchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCC---------H
Q 005174 157 AEALCVYKQMQSRRIRGDNF-TYPSVLKACGEMMDVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQ---------V 225 (710)
Q Consensus 157 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~---------~ 225 (710)
..+..+.+++++.++.+.+. .++.+|.+|++.|++++|..+++.|. .|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34556677777777765543 57888888888888888888888888 8888888888888888887654 5
Q ss_pred HHHHHHHhhc----CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 226 DVARRLFDKM----LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRM 301 (710)
Q Consensus 226 ~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 301 (710)
+.|.++|++| ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 6677777766 346777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 005174 302 RTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR 357 (710)
Q Consensus 302 ~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~ 357 (710)
.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|..|+..+|+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777766666666666666554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-22 Score=214.86 Aligned_cols=425 Identities=12% Similarity=-0.018 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKML--ERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR 287 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 287 (710)
..+..+...+.+.|++++|...|+++. .|+...|..+..++.+.|++++|...|+++.+.+ +.+..+|..+..++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 445566677778888888888888773 3677778888888888888888888888877653 2345677778888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHH---HHHHHHhcCCHHHH
Q 005174 288 TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNA---LITMYSRCKDLRHA 364 (710)
Q Consensus 288 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A 364 (710)
.|++++|+..|+++...+. ++.......+..+........+.+.+..+...+..++...... .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 8888888888888777653 2333333333333222222222222211111111010000000 00000111111111
Q ss_pred HHHHHhcCC---------C-ChhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCC--------CcHHHHHHHH
Q 005174 365 YILFKMTAE---------K-SIITWNSMLSGYTH---LDCAEESAFLFREMFR-----SGVE--------PNYVTIASIL 418 (710)
Q Consensus 365 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~t~~~ll 418 (710)
...+..... + +...+......+.. .|++++|+..|+++.. .... .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 112211111 1 23444444444444 8999999999999987 3112 2345677777
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChH
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGR 495 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 495 (710)
..+...|+++.|...+..+.+.. +. ...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999876 22 88899999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 496 VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
+|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .|+ ...+..+...|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999853 235678888999999999999999999999875 454 77899999999999999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 575 M----PYTPT----SAMWATLLGACQI---HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 575 m----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+ +..++ ...|..+...+.. .|+++.|...++.++++.|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 22233 4488889999999 99999999999999999999999999999999999999999999998875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=208.99 Aligned_cols=272 Identities=9% Similarity=-0.060 Sum_probs=224.2
Q ss_pred hhHHHHHHHHHHh---cCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 345 ENVRNALITMYSR---CKDLRHAYILFKMTAE----------------K-SIITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 345 ~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+..+...+.. .|++++|...|+++.+ + +...|..+...+...|++++|...|+++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444444443 7888888888876544 1 345788888999999999999999999988
Q ss_pred cCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHH
Q 005174 405 SGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTY 481 (710)
Q Consensus 405 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 481 (710)
.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|
T Consensus 266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 75 337788888889999999999999999998875 56778899999999999999999999998752 367789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVD 557 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~ 557 (710)
..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.....-.|+ ...+..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 999999999999999999999998752 335678888899999999999999999999875322232 338999999
Q ss_pred HHHh---cCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 558 LYGR---AGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 558 ~~~~---~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
.|.+ .|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999 999999999999872 234678888999999999999999999999999999987776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-21 Score=202.71 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=155.0
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|+++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333455555555555555442 45666777777888888888888888877653 4677888888888888999999
Q ss_pred HHHHHHHHHCCCCCChH-HHHHH------------HHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHH
Q 005174 498 LKLFEEMNKNQIKPDHV-TMVAV------------LSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACMVDLY 559 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~ 559 (710)
+..|+++.+. .|+.. .+..+ ...|.+.|++++|..+|+.+... .|+ ..++..++.+|
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9998888863 45433 33333 67889999999999999999875 565 45789999999
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 005174 560 GRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANM 624 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 624 (710)
.+.|++++|++.++++. .+.+...|..+..+|...|+++.|...++++++++|+++..+..++.+
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999873 334788999999999999999999999999999999999999999943
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=201.11 Aligned_cols=421 Identities=11% Similarity=0.012 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHH
Q 005174 210 FVHNALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCL 286 (710)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 286 (710)
..+..+...+.+.|++++|...|+++.+ .+...|..+..+|.+.|++++|++.|+++.+.+ +.+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4455566666667777777777766632 355666666777777777777777777766543 224556666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHhcCCHHHH
Q 005174 287 RTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY--GEYENVRNALITMYSRCKDLRHA 364 (710)
Q Consensus 287 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 364 (710)
..|++++|+..|+.+. . .|+.. ...+..+...+....+...+..++.... ..........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777775322 1 11111 1112233333344555555555543210 00000113334445566666666
Q ss_pred HHHHHhcCCCChh---HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCc--------HHHHHHHHHHHhccC
Q 005174 365 YILFKMTAEKSII---TWNSMLSGYTHL--------DCAEESAFLFREMFRSGVEPN--------YVTIASILPLCARVA 425 (710)
Q Consensus 365 ~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~~ 425 (710)
...+......+.. .+..+...+... |++++|+.+|+++.+.. |+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence 6666655544332 333333332222 47888888888887653 33 224555566777888
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
+++.|...+..+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 258 ~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8899999999888864 3477888888899999999999999987653 367788899999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 005174 503 EMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----- 576 (710)
Q Consensus 503 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 576 (710)
++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+...|.+.|++++|.+.++++.
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 988753 224667888888899999999999999998875 455 7788889999999999999999998761
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 ---YTPTSAMWATLLGACQIH----------RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.......+..+...+... |+++.|...++++++.+|+++..+..++.+|.+.|++++|.+.++....
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223344455667777 9999999999999999999999999999999999999999999988876
Q ss_pred CC
Q 005174 644 LG 645 (710)
Q Consensus 644 ~~ 645 (710)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-20 Score=193.85 Aligned_cols=295 Identities=11% Similarity=0.033 Sum_probs=233.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILP 419 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 419 (710)
.+...+..+...|.+.|++++|..+|+.+.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3445566667777777777777777766542 355667777777777777777777777777654 334556666667
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCch---HHHhHH------------hhhhhhcCChhHHHHHHhhcCC---CChhHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHL---LLWNSL------------VEMYARSGKVPEAKSVFDLMSR---RDEVTY 481 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 481 (710)
.+...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.+ .+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777777777777776643 3333 444444 4458899999999999998763 477889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHH-----
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACM----- 555 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l----- 555 (710)
..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++... .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence 999999999999999999999998752 346788999999999999999999999999864 666 4555554
Q ss_pred -------HHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 556 -------VDLYGRAGLLNKAKEIITKMP-YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 556 -------i~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+..|.+.|++++|.+.|+++- ..|+ ...|..+...+...|+++.|...++.++++.|+++..|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 889999999999999999882 3344 447888889999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 005174 623 NMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+|...|++++|.+.++...+.
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999998763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=196.14 Aligned_cols=435 Identities=11% Similarity=-0.023 Sum_probs=291.8
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005174 142 PWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGK 221 (710)
Q Consensus 142 ~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~ 221 (710)
.|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+..-.+.+...+..+..+|..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 35666777778888888888888877642 12444566666666666666666666666663344556666677777777
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHH
Q 005174 222 FGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLS 299 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (710)
.|++++|...|+.+ ..+....+..+..+...+...+|...++++.... ..+........+..+....+.+.+...+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 77777777777543 2222222233444444555566666666664321 01111112223333444444444333322
Q ss_pred HHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHH--------hcCCHHHHHHHHHhc
Q 005174 300 RMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYS--------RCKDLRHAYILFKMT 371 (710)
Q Consensus 300 ~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~--------~~g~~~~A~~~~~~~ 371 (710)
..... .+.... ....+...+. ..|++++|..+|+.+
T Consensus 185 ~~~~~--~~~~~~----------------------------------~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 185 TSSNY--DTAYAL----------------------------------LSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp CCCSS--CSSHHH----------------------------------HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc--ccHHHH----------------------------------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22111 111111 1122222221 124677777777766
Q ss_pred CCCC----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 005174 372 AEKS----------IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRA 441 (710)
Q Consensus 372 ~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 441 (710)
.+.+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 5432 224666777888899999999999999886 4667788888889999999999999999999875
Q ss_pred CCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 005174 442 MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVA 518 (710)
Q Consensus 442 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 518 (710)
+.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..
T Consensus 307 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 --PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 66788899999999999999999999998763 367789999999999999999999999998853 334668888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhc----------CCHHHHHHHHHhCC--CCCCHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRA----------GLLNKAKEIITKMP--YTPTSA 582 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~--~~p~~~ 582 (710)
+...+...|++++|...++++.+...-.++ ...+..+..+|.+. |++++|...+++.. .+.+..
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 463 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999998765311121 22345556778888 99999999999873 334678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
.|..+...+...|+++.|...+++++++.|++.....
T Consensus 464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 8999999999999999999999999999998766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-17 Score=169.73 Aligned_cols=308 Identities=12% Similarity=0.044 Sum_probs=201.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
.+...+...|++++|...|+.+.+ .+...|..+...+...|++++|+..|+++.+.. +-+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 333344444444444444443321 123344444444444444444444444444332 1123334444444444444
Q ss_pred hHHHHHHHHHHHHhCCCC---CchHHHhH------------HhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFN---EHLLLWNS------------LVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGY 488 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~---~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 488 (710)
++.|...+..+.+.. + .+...+.. +...+...|++++|...|+++.+ .+...|..+...|
T Consensus 87 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp HHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 444444444444432 1 12222222 25677778888888888887652 3667788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHH------------HH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFA------------CM 555 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l 555 (710)
...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .|+ ...+. .+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887752 335667777888888888888888888888764 454 33332 33
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP-YTPT-S----AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~-~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
...+.+.|++++|.+.++++. ..|+ . ..+..+...+...|+++.|...++.+++.+|+++..|..++.+|...|
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 677889999999999998872 2333 3 234456788899999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 630 CWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 630 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
++++|.+.++...+ .+|+...++..|.++...+++
T Consensus 321 ~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 321 MYDEAIQDYEAAQE--------------------------HNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp CHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHHHHHH
Confidence 99999999988774 456667777778777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-15 Score=164.04 Aligned_cols=543 Identities=11% Similarity=0.035 Sum_probs=310.2
Q ss_pred cchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchh
Q 005174 33 EHIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLV 112 (710)
Q Consensus 33 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (710)
..-++........+|..+|.+.+|++++++....+-.-......-+.++++..+. +...+.......- ....
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDA 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccH
Confidence 3455566677888899999999999999998744220001111344455444443 4444444433322 2224
Q ss_pred hHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHH-hCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCc
Q 005174 113 PKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYV-RDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDV 191 (710)
Q Consensus 113 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 191 (710)
..+...+...|.+++|..+|++.. .+..-+..+. ..+++++|.+++++.. +..+|..+-+++...|++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 446677777888888888887753 1222222223 5667777777766441 355666777777777777
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 192 DFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--RDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 192 ~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
++|...|... .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. +
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7776666442 4555666677777777777777777755422 23223334666777776666433322 1
Q ss_pred CCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHH
Q 005174 270 GVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRN 349 (710)
Q Consensus 270 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 349 (710)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 234455666666777777777777777664 25666666677777777777666654 3445666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--ccCch
Q 005174 350 ALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA--RVANL 427 (710)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~ 427 (710)
..-.++...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+... +-....|+-+..+++ +.+++
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 666666667777777666554 22344455577777777788888888776665432 222223333333333 33334
Q ss_pred HHHHHHHHHHHHhCCCCC------chHHHhHHhhhhhhcCChhHHHHHH-------------hhcC--CCChhHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNE------HLLLWNSLVEMYARSGKVPEAKSVF-------------DLMS--RRDEVTYTSLIA 486 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~--~~~~~~~~~li~ 486 (710)
.+..+.|. ..+.+++ +...|..++-.|.+.|+++.|.... .... ..|+..|...+.
T Consensus 1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 34333333 2222222 4566778888888888888777322 1111 125556666666
Q ss_pred HHHhcC---------------ChHHHHHHHHHHHHCCCCCChHHHHH-------------HHHHhhccCcHHHHHHHHHH
Q 005174 487 GYGIQG---------------EGRVALKLFEEMNKNQIKPDHVTMVA-------------VLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 487 ~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~-------------ll~a~~~~g~~~~a~~~~~~ 538 (710)
-|...+ +++++.++|.+. |.-|-...|.. +-.-+....+++.-+...+.
T Consensus 1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~ 1486 (1630)
T 1xi4_A 1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 1486 (1630)
T ss_pred HHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhh
Confidence 666555 666666666522 11111111111 11111222222111111000
Q ss_pred HHH------HhCCC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 539 MTS------IYGIF-PQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 539 ~~~------~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
... ...++ -+ .+.-..-...|.+.|+++.|.+++.+-.. |.--+.+....|+.+.+++.+.-+.+.
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l------~~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC------HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 000 00000 11 11122233455666999999999998763 445677788999999999999999888
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 611 RPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 611 ~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
.+.+.|......+...=+.|-++++
T Consensus 1561 --~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1561 --EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred --CChhHHHHHHHHHhccCCchHHHHH
Confidence 5677788777777777788887775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-17 Score=166.40 Aligned_cols=309 Identities=11% Similarity=0.026 Sum_probs=220.7
Q ss_pred ehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 005174 276 ITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMY 355 (710)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~ 355 (710)
..+..+...+...|++++|+..|+++.+.. | .+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD--P----------------------------------DNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c----------------------------------ccHHHHHHHHHHH
Confidence 445566666677777777777777666532 1 1222334444444
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----cHHHHHHH-----------
Q 005174 356 SRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEP----NYVTIASI----------- 417 (710)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~l----------- 417 (710)
...|++++|...|+...+ .+...|..+...|...|++++|...|++..+. .| +...+..+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHH
Confidence 555555555555544322 23345555555555566666666666655543 23 22222222
Q ss_pred -HHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCC
Q 005174 418 -LPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGE 493 (710)
Q Consensus 418 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 493 (710)
...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 456777888888888888888875 56778888999999999999999999988764 367789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCh-HHHH------------HHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-h----hHHHHH
Q 005174 494 GRVALKLFEEMNKNQIKPDH-VTMV------------AVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-L----EHFACM 555 (710)
Q Consensus 494 ~~~A~~~~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l 555 (710)
+++|...|++..+. .|+. ..+. .+...+.+.|++++|...++++.+. .|+ . ..+..+
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 99999999998874 3443 2222 2255688899999999999999875 455 2 335568
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 556 VDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
..+|.+.|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.+++++|+++..+..+..++...+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 899999999999999999873 23478899999999999999999999999999999999988888887766443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-15 Score=165.51 Aligned_cols=484 Identities=12% Similarity=0.068 Sum_probs=335.7
Q ss_pred CchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhC------------CCCCCcc----------HHH
Q 005174 88 KALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENS------------NIRYPLP----------WNL 145 (710)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~~~~~----------~~~ 145 (710)
.++.-...+++.-+..| ..++.++|+|...|...++-.+. .+.+- .++|+.. -..
T Consensus 853 nrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~e 929 (1630)
T 1xi4_A 853 NRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLE 929 (1630)
T ss_pred HHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHH
Confidence 33433444556666666 56788999999999987654432 22221 1222211 122
Q ss_pred HHHHHHhCCCchH-HHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHH-hcC--CChHHHHHHHHHHHHh
Q 005174 146 LISLYVRDGFYAE-ALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCID-ACH--EWSLFVHNALVSMYGK 221 (710)
Q Consensus 146 li~~~~~~~~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~g~--~~~~~~~~~li~~~~~ 221 (710)
||....+++.++. |.-+.++ -|...|..++. .+-+.-+++.++.. ..+ ..++.-....+..|..
T Consensus 930 li~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ 997 (1630)
T 1xi4_A 930 LINVCNENSLFKSLSRYLVRR-------KDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMT 997 (1630)
T ss_pred HHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHh
Confidence 3333333333332 1112211 13444444441 11123344555544 221 2234444667788889
Q ss_pred cCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHH
Q 005174 222 FGQVDVARRLFDKMLE-R-----DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVL 295 (710)
Q Consensus 222 ~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 295 (710)
.|.+.+|+++++++.- + +...-+.++.+..+. +..+..+...+... .....+...+...|.+++|.
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNELFEEAF 1069 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHH
Confidence 9999999999999942 2 335667778777777 55666666666632 22445788899999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 005174 296 ELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKS 375 (710)
Q Consensus 296 ~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 375 (710)
.+|++... .......++ ...+++++|.++...+ .++.+|..+..++.+.|++++|...|.+. .|
T Consensus 1070 ~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999631 111122222 2677888888887754 45788999999999999999999999764 67
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..+.+
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHH
Confidence 7788999999999999999999999877764 33333335888999998888654442 1 345566778999
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.|...|++++|..+|... ..|..+..+|.+.|++++|++.+++. -+..+|..+-.+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999986 48999999999999999999999987 3568999999999999999999887
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHHHHhhC
Q 005174 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIH--RNTGIGEWAAEKLLETR 611 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~ 611 (710)
... +.-+.+.+..++..|.+.|.+++|+.+++.. ...| ....|.-|...+.+. ++..++.+.+..-..+.
T Consensus 1273 gl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 653 3345666889999999999999999999876 3333 345666666666554 33333444444434444
Q ss_pred C-----CCCchHHHHHHHHHhcCCchHHHHH
Q 005174 612 P-----ENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 612 p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
| +++..|.-++.+|.+.|.|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 5788899999999999999999864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-16 Score=161.73 Aligned_cols=286 Identities=12% Similarity=0.036 Sum_probs=219.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 005174 342 GEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASIL 418 (710)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 418 (710)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666777777888888888888877643 344566677788888888888888888888763 33456677777
Q ss_pred HHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCCh
Q 005174 419 PLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEG 494 (710)
Q Consensus 419 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 494 (710)
..+...| +++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 7778888 8888888888888764 55677788888888888888888888887653 3456777788888889999
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHHHhcCCHHH
Q 005174 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI-------FPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 495 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~~~li~~~~~~g~~~~ 567 (710)
++|+..|++..+.. +.+...+..+...+...|++++|...++++.+...- ......+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999888753 334667888888888889999999988888765211 2225678888899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCc
Q 005174 568 AKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA-ATGCW 631 (710)
Q Consensus 568 A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 631 (710)
|.+.+++.. .+.+...|..+...+...|+++.|...++++++++|+++..+..++.++. ..|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 998888762 23366788888888888999999999999999999998888888888884 55543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=166.07 Aligned_cols=354 Identities=13% Similarity=0.096 Sum_probs=129.2
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHH
Q 005174 221 KFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSR 300 (710)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (710)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888885553 8888888888888888888888653 4666778888887778888888876665
Q ss_pred HHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH
Q 005174 301 MRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWN 380 (710)
Q Consensus 301 m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (710)
.++. .++..+. +.|+.+|.++|+++++.++++. |+..+|+
T Consensus 87 ark~--~~~~~i~-----------------------------------~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~ 126 (449)
T 1b89_A 87 ARKK--ARESYVE-----------------------------------TELIFALAKTNRLAELEEFING---PNNAHIQ 126 (449)
T ss_dssp -----------------------------------------------------------CHHHHTTTTTC---C------
T ss_pred HHHh--CccchhH-----------------------------------HHHHHHHHHhCCHHHHHHHHcC---CcHHHHH
Confidence 5553 2223333 4455555555555555544432 3444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...|...|.+++|...|..+ ..|..+..++.+.|+++.|.+.+.++ .++.+|..++.+|...
T Consensus 127 ~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 127 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDG 190 (449)
T ss_dssp ----------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHc
Confidence 5555555555555555555544 13555555555555555555555544 1345566666666666
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHhhccCcHHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAV--LSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~ 538 (710)
|+++.|......+. .++.....++..|.+.|++++|+.+++...... +--...|+-+ +.+-.+.+++.+..+.|..
T Consensus 191 ~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 191 KEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp TCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666655554433 333334457777888888888888888776432 2223334433 3333444555555555542
Q ss_pred HHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 539 MTSIYGIFP------QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 539 ~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
- -.+.| +...|..++-.|...++++.|...+-+-+ |+.---..+.....+-.+.+.--++..-.++-.|
T Consensus 269 ~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 269 R---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp T---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred H---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 2 24444 35678888889999999998877665543 1211111222333334444443333333333333
Q ss_pred CC----------CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 613 EN----------SGYYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 613 ~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.- .--+...+..+.+.|.+.-+...+..+...+
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 21 1113445556666666666666665555433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-15 Score=161.67 Aligned_cols=209 Identities=8% Similarity=0.013 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhh-------cCChh-------HHHHHHhhcCC---C-ChhHHHHHHHHHHh
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-------SGKVP-------EAKSVFDLMSR---R-DEVTYTSLIAGYGI 490 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~ 490 (710)
.+..++++++... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 256 ~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4556666666653 5556667777766664 57765 77777776653 2 45677777777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCCHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDH--VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL-YGRAGLLN 566 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~ 566 (710)
.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+. .|. ...|...+.+ +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 77777777777777763 4542 36666666666777777777777777642 333 2333322222 23577777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHhcCCchHHHHHHHH
Q 005174 567 KAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG----YYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 567 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
+|..+|++. ...| +...|..++..+...|+.+.|...++++++..|.++. .|...+......|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777765 2223 5677777777777777777777777777777665554 566667777777777777777776
Q ss_pred HHhC
Q 005174 641 MRDL 644 (710)
Q Consensus 641 m~~~ 644 (710)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-15 Score=158.48 Aligned_cols=365 Identities=10% Similarity=-0.009 Sum_probs=256.4
Q ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCceehH
Q 005174 208 SLFVHNALVSMYGK----FGQVDVARRLFDKMLE-RDAVSWNTMISAYAS----KGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 208 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
+...+..|...|.. .+++++|...|++..+ .+...+..|...|.. .++.++|.++|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55556666666666 6677777777766533 355566666666666 666777777777666544 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHH
Q 005174 279 NTIAGGCLR----TGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITM 354 (710)
Q Consensus 279 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 354 (710)
..|...|.. .+++++|+..|++..+.| +...+..|...
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~Lg~~ 156 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--------------------------------------RDSGQQSMGDA 156 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHHH
Confidence 555555555 556666666666655543 22333445555
Q ss_pred HHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc--
Q 005174 355 YSR----CKDLRHAYILFKMTAE-KSIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR-- 423 (710)
Q Consensus 355 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 423 (710)
|.. .+++++|...|++..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...+..
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 554 5667777777765443 355666667667766 677788888887777664 34455555555553
Q ss_pred --cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh----cCChhHHHHHHhhcCCC-ChhHHHHHHHHHHhc-----
Q 005174 424 --VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR----SGKVPEAKSVFDLMSRR-DEVTYTSLIAGYGIQ----- 491 (710)
Q Consensus 424 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~----- 491 (710)
.++.++|...+....+.+ +...+..+..+|.. .++.++|...|++..+. +...+..+...|...
T Consensus 234 g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~ 309 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVA 309 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBC
T ss_pred CCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Confidence 677888888888777655 34556667777776 78899999999887654 677788888888887
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCC
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGL 564 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~ 564 (710)
+++++|+.+|++..+.| +...+..+...+...| +.++|.++|++..+. .+...+..|..+|.. .++
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999998865 4456666666666656 789999999998764 357788889999988 899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 005174 565 LNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPE---NSGYYVLIANMYAA 627 (710)
Q Consensus 565 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 627 (710)
+++|.+.|++.....+...+..|...|.. .+|.+.|...++++.+.+|+ ++.....++.++..
T Consensus 383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999987544567888888888887 89999999999999999854 66666777666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=157.65 Aligned_cols=184 Identities=13% Similarity=0.146 Sum_probs=59.1
Q ss_pred HccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHH
Q 005174 120 ASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHS 199 (710)
Q Consensus 120 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 199 (710)
-+.|++++|.+.++++++| .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999665 48999999999999999999999652 578899999999999999999999887
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 200 CIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 200 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
..... .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 86 ~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 86 MARKK-ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 77643 44578889999999999999999888864 77789999999999999999999999977 4788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHH
Q 005174 280 TIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGK 330 (710)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~ 330 (710)
.++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 9999999999999999999888 25667777777777777766663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-16 Score=158.26 Aligned_cols=262 Identities=10% Similarity=0.017 Sum_probs=227.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHH
Q 005174 374 KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSL 453 (710)
Q Consensus 374 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 453 (710)
.+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 456677788889999999999999999998874 3344556667778889999999999999999975 6678889999
Q ss_pred hhhhhhcC-ChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcH
Q 005174 454 VEMYARSG-KVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLV 529 (710)
Q Consensus 454 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 529 (710)
...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998764 357789999999999999999999999998853 22456777788899999999
Q ss_pred HHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCh
Q 005174 530 VEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-----------YTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~p~~~~~~~l~~~~~~~g~~ 597 (710)
++|...++++.+ +.|+ ...+..+...|.+.|++++|...+++.. .+.+..+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999985 4566 7889999999999999999999998762 033467899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+.|...+++++++.|+++..+..++.+|.+.|++++|.+.+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=164.47 Aligned_cols=279 Identities=8% Similarity=-0.079 Sum_probs=217.8
Q ss_pred HHhcCCHHHHHH-HHHhcCC---C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc
Q 005174 355 YSRCKDLRHAYI-LFKMTAE---K----SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN 426 (710)
Q Consensus 355 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 426 (710)
|.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577788877 7775432 1 34567788888888888888888888888764 4456677778888888888
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHH---------------HHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTS---------------LIAGY 488 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~ 488 (710)
++.|...+..+++.. +.+..++..+...|...|++++|...|+++.+. +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 888888888888875 567788888888888999999998888876532 2222221 13334
Q ss_pred HhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLN 566 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 566 (710)
...|++++|+..|+++.+.... ++..++..+...+...|++++|...++++... .|+ ...+..+..+|.+.|+++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHH
Confidence 4889999999999999885322 14778899999999999999999999999875 565 788999999999999999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCCchH
Q 005174 567 KAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-----------SGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 567 ~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 633 (710)
+|++.++++. .+.+..+|..+..++...|+++.|...+++++++.|++ ...|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999872 23467889999999999999999999999999999887 7899999999999999999
Q ss_pred HHHHHH
Q 005174 634 LAKVRT 639 (710)
Q Consensus 634 A~~~~~ 639 (710)
|.++++
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 999865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-14 Score=156.05 Aligned_cols=403 Identities=10% Similarity=0.090 Sum_probs=292.8
Q ss_pred hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHH
Q 005174 203 ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWN 279 (710)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 279 (710)
...+.+...|..++. +.+.|+++.|..+|+++.+ | +...|..++..+.+.|++++|..+|++.... .|+...|.
T Consensus 7 ~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 7 EENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp HHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred hhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 345668889999998 4788999999999999955 3 6678999999999999999999999999874 36777777
Q ss_pred HHHHHH-HhcCChHHHHH----HHHHHHhC-CCCCC-hhHHHHHHHHhhc---------cCChHHHHHHHHHHHhhcCCC
Q 005174 280 TIAGGC-LRTGNFKGVLE----LLSRMRTQ-ETYLD-SVATVIGLGACSH---------VGALKLGKEIHGSAVRGCYGE 343 (710)
Q Consensus 280 ~li~~~-~~~g~~~~a~~----~~~~m~~~-~~~p~-~~t~~~~l~~~~~---------~~~~~~a~~i~~~~~~~~~~~ 343 (710)
..+... ...|+.++|.+ +|+..... |..|+ ...|...+..... .|+++.+..++...++.....
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 777533 45677777665 67666543 55554 3445555554433 678999999999998832122
Q ss_pred chhHHHHHHHHH-------------HhcCCHHHHHHHHHh------cC-------CCC--------hhHHHHHHHHHHhc
Q 005174 344 YENVRNALITMY-------------SRCKDLRHAYILFKM------TA-------EKS--------IITWNSMLSGYTHL 389 (710)
Q Consensus 344 ~~~~~~~li~~~-------------~~~g~~~~A~~~~~~------~~-------~~~--------~~~~~~li~~~~~~ 389 (710)
...+|....... .+.++++.|..++.. .. .++ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 223444333221 134567778776664 11 111 24566655443332
Q ss_pred ----CCh----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCCch
Q 005174 390 ----DCA----EESAFLFREMFRSGVEPNYVTIASILPLCAR-------VANLQ-------HGKEFHCYILRRAMFNEHL 447 (710)
Q Consensus 390 ----g~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 447 (710)
++. ..+..+|++.+... +-+...|......+.. .|+++ .|..+++..++.- .+.+.
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~ 321 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNM 321 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccH
Confidence 232 37788899888762 3456677777776664 68877 8899999988742 46678
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DE-VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA- 522 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a- 522 (710)
.+|..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...|......
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 8999999999999999999999998763 3 33 478999999999999999999999998752 1223333332222
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM----PYTPT--SAMWATLLGACQIHR 595 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~l~~~~~~~g 595 (710)
+...|+.++|..+|+...+. .|+ ...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|
T Consensus 401 ~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 33589999999999998875 465 788999999999999999999999887 22332 558888888889999
Q ss_pred ChHHHHHHHHHHHhhCCCC
Q 005174 596 NTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~ 614 (710)
+.+.+..+.+++.+..|++
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999998854
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=159.07 Aligned_cols=259 Identities=8% Similarity=-0.083 Sum_probs=196.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3456666777777777777777777776653 3355666667777777777777777777777664 555677777777
Q ss_pred hhhhcCChhHHHHHHhhcCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChHHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRD-------------EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PDHVTMVAVLS 521 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 521 (710)
.|.+.|++++|...|+++.+.+ ...+..+...|...|++++|+.+|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888877765321 223445678899999999999999999885322 15778899999
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|...|+++.+. .|+ ...|..+..+|.+.|++++|++.++++- ..| +..+|..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 565 8889999999999999999999999872 334 5888999999999999999
Q ss_pred HHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 005174 599 IGEWAAEKLLETRPE------------NSGYYVLIANMYAATGCWDKLAKVRTC 640 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 640 (710)
.|...+++++++.|+ +...|..++.++...|+.+.|.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999877 367899999999999999999886543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-14 Score=148.39 Aligned_cols=352 Identities=13% Similarity=0.038 Sum_probs=278.0
Q ss_pred CChhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCC
Q 005174 238 RDAVSWNTMISAYAS----KGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLR----TGNFKGVLELLSRMRTQETYLD 309 (710)
Q Consensus 238 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~ 309 (710)
.+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 466666666666666 677777777777776653 34556666666666 666666666666665443
Q ss_pred hhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhHHHHHHH
Q 005174 310 SVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSR----CKDLRHAYILFKMTAEK-SIITWNSMLS 384 (710)
Q Consensus 310 ~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~ 384 (710)
+...+..|...|.. .+++++|...|+...+. +...+..+..
T Consensus 110 ----------------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 110 ----------------------------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22334556666766 78999999999876554 6678888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhh
Q 005174 385 GYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEM 456 (710)
Q Consensus 385 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 456 (710)
.|.. .++.++|+..|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..+..+
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~ 228 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADM 228 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHH
Confidence 8887 789999999999999875 56667777777776 789999999999999876 45678888888
Q ss_pred hhh----cCChhHHHHHHhhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc-
Q 005174 457 YAR----SGKVPEAKSVFDLMSR-RDEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS- 526 (710)
Q Consensus 457 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~- 526 (710)
|.. .+++++|...|++..+ .+...+..+...|.. .++.++|+.+|++..+.| +...+..+...+...
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 886 8899999999998765 467788888888888 899999999999998764 455666676677666
Q ss_pred ----CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005174 527 ----GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG---LLNKAKEIITKMPYTPTSAMWATLLGACQI----HR 595 (710)
Q Consensus 527 ----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g 595 (710)
+++++|..++++..+. -+...+..+..+|.+.| +.++|++.|++.....+...+..|...|.. .+
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC
Confidence 8999999999998764 24567888888888867 889999999988544678899999999988 89
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 646 (710)
+.+.|...++++.+.+ ++..+..|+.+|.. .++.++|.+.+++..+.+.
T Consensus 382 ~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999998864 57899999999998 8999999999999887663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-18 Score=181.71 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=129.4
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehH
Q 005174 206 EWSLFVHNALVSMYGKFGQVDVARRLFDKM-------LERDAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITW 278 (710)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 278 (710)
..-..+||+||++|+++|++++|..+|++| ..||++|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 345679999999999999999999999776 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc------hhHHHHH
Q 005174 279 NTIAGGCLRTGNF-KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY------ENVRNAL 351 (710)
Q Consensus 279 ~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~l 351 (710)
|+||.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.+-++..+++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999888665554333332222 2344443 3445667
Q ss_pred HHHHHhcCC---------HHHHHHHHH
Q 005174 352 ITMYSRCKD---------LRHAYILFK 369 (710)
Q Consensus 352 i~~~~~~g~---------~~~A~~~~~ 369 (710)
.+.|.+.+. .++-...|+
T Consensus 279 ~dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 279 RDVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp HHHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred HHHHccCCCCcCccccCCHHHHHHHHH
Confidence 778887662 456656664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-16 Score=157.69 Aligned_cols=282 Identities=12% Similarity=0.038 Sum_probs=134.9
Q ss_pred CCChHHHHH-HHHHHHHcC---CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHH
Q 005174 253 KGLWKEAFQ-LFVEMQEEG---VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKL 328 (710)
Q Consensus 253 ~g~~~~a~~-~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~ 328 (710)
.|++++|.. .|++..... ...+...+..+...+.+.|++++|+..|+++.+..
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------- 94 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----------------------- 94 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------
Confidence 355566665 555443211 11134456666666666666666666666665542
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA---EKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 329 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
+.+..++..+...|.+.|++++|...|+... ..+..+|..+...|...|++++|+..|+++...
T Consensus 95 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 95 -------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122233444444555555555555554432 224455666666666666666666666666654
Q ss_pred CCCCcHHH-HHH---------------HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHH
Q 005174 406 GVEPNYVT-IAS---------------ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469 (710)
Q Consensus 406 g~~p~~~t-~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 469 (710)
. |+... +.. .+..+...|++++|...+..+++..+..++
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----------------------- 216 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----------------------- 216 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC-----------------------
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCccc-----------------------
Confidence 3 21111 000 111122444444444444444443311113
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-
Q 005174 470 FDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ- 548 (710)
Q Consensus 470 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 548 (710)
..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+. .|+
T Consensus 217 --------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~ 284 (368)
T 1fch_A 217 --------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGY 284 (368)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc
Confidence 3444555555555555555555555555421 112445555555555555555555555555543 333
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP------------TSAMWATLLGACQIHRNTGIGEWAAEKL 607 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 607 (710)
...+..+..+|.+.|++++|...++++- ..| ...+|..+..++...|+.+.|..++++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 4555555555555666666555555441 001 1455666666666666666665555433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-14 Score=142.07 Aligned_cols=270 Identities=9% Similarity=-0.048 Sum_probs=211.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKSI----ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQH 429 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 429 (710)
-....|++..|+..++.....+. .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556888888888877665432 2445567888889999888876654 235667778888888888888999
Q ss_pred HHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 430 GKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 430 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
|.+.++.++..+..+.+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 9999988887652355677788888999999999999999998 567889999999999999999999999999985
Q ss_pred CCChHHH---HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 005174 510 KPDHVTM---VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMW 584 (710)
Q Consensus 510 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 584 (710)
.|+.... ..++..+...|++++|..+|+++.+. ...+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4664322 12333344568999999999999986 2334888999999999999999999999986 3334 77889
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 585 ATLLGACQIHRNTGI-GEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
..++..+...|+.+. +.+.++++++++|+++.. .+...+.+.+|++..-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 999999999998865 578899999999998654 4566777777776543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=154.19 Aligned_cols=370 Identities=11% Similarity=0.007 Sum_probs=211.9
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C---CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCC---CC
Q 005174 239 DAVSWNTMISAYASKGLWKEAFQLFVEMQEE-----G---VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQE---TY 307 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~ 307 (710)
....||.+...+...|++++|++.|++..+. + -.....+|+.+...|...|++++|...+++..+.. ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3457888888888888999998888876431 1 11234578888888888888888888887765421 00
Q ss_pred CChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCC---CChhHHHHH
Q 005174 308 LDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRC--KDLRHAYILFKMTAE---KSIITWNSM 382 (710)
Q Consensus 308 p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~l 382 (710)
+. ......++..+..++.+. +++++|...|++..+ .+...+..+
T Consensus 130 ~~-------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~ 178 (472)
T 4g1t_A 130 PY-------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL 178 (472)
T ss_dssp SS-------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cc-------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 00 001112223333333332 345666666655432 233344333
Q ss_pred HHH---HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 383 LSG---YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 383 i~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
... +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.|.+.+....... +.+..++..+..
T Consensus 179 ~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~ 255 (472)
T 4g1t_A 179 AIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHH
Confidence 333 234455666666666666543 223333333333332 2345666777777666654 555666677777
Q ss_pred hhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCh
Q 005174 456 MYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGI-------------------QGEGRVALKLFEEMNKNQIKPDH 513 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p~~ 513 (710)
.|.+.|++++|...|++..+ | +..+|..+...|.. .+..++|+..|++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 77777777777777766542 2 44455555544432 233567888888877642 2235
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh----HHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE----HFACMVDL-YGRAGLLNKAKEIITKM-PYTPTSAMWATL 587 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 587 (710)
.++..+...+...|++++|...|++..+. .|+.. .+..+... +...|+.++|+..|++. ...|+...+...
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~ 411 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence 56777888899999999999999998764 44422 23333332 34678999999999876 355654433322
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEE
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 655 (710)
...+...+++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|+
T Consensus 412 ---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23356677888899999999999999999999999999999999888776555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=152.01 Aligned_cols=252 Identities=7% Similarity=-0.069 Sum_probs=171.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 381 SMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
.+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHc
Confidence 33334444444444444444444332 1233333344444444444444444444444432 33444455555555555
Q ss_pred CChhHHHHHHhhcCCC---ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRR---DEVTYTSL--------------IA-GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
|++++|...|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 5555555555544321 11122221 22 3677888999999999988753 3357788888889
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~ 599 (710)
+...|++++|...++++... .|+ ...+..+...|.+.|++++|.+.++++. .+.+..+|..+...+...|+++.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999875 455 7889999999999999999999998872 23467889999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 600 GEWAAEKLLETRPE------------NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 600 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
|...+++++++.|+ ++..|..++.+|.+.|++++|.++++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998 78899999999999999999999865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-15 Score=146.24 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=202.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGVEPNY--VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS 460 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 460 (710)
|.-....|++..|+..++..... .|+. .....+..++...|+++.|...++. . .+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence 44566789999999998876443 4543 3445677899999999999976543 2 466788899999999999
Q ss_pred CChhHHHHHHhhcC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 461 GKVPEAKSVFDLMS----RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 461 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
|+.++|.+.++++. .| +...+..+...|...|++++|+..+++ ..+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999864 24 566778888999999999999999987 45677888899999999999999999
Q ss_pred HHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 536 FERMTSIYGIFPQLE---HFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
++++.+. .|+.. ...+++..+...|++++|..+|+++. .+.+...|+.+..++...|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 57632 12334556666799999999999983 4458889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHh
Q 005174 611 RPENSGYYVLIANMYAATGCWDK-LAKVRTCMRD 643 (710)
Q Consensus 611 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 643 (710)
+|+++.++..++.++...|++++ +.++++++.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999987 5688887765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-15 Score=150.30 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHH
Q 005174 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAG 487 (710)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 487 (710)
...+......+.+.|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3457777888999999999999999999985 67789999999999999999999999998763 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-----------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDH-----------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMV 556 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 556 (710)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.....-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3432 2233457788899999999999999998622222578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 557 DLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
.+|.+.|++++|++.++++. .+.+..+|..+..+|...|+++.|...+++++++.|+++..|..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999872 3347889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 005174 635 AKVRTCMRDLG 645 (710)
Q Consensus 635 ~~~~~~m~~~~ 645 (710)
.+.+++.....
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999887643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-17 Score=173.15 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHH---HcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHH
Q 005174 240 AVSWNTMISAYASKGLWKEAFQLFVEMQ---EEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIG 316 (710)
Q Consensus 240 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~ 316 (710)
..+||+||.+||+.|++++|.++|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCh-HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005174 317 LGACSHVGAL-KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371 (710)
Q Consensus 317 l~~~~~~~~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (710)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999985 789999999999999999999999998888876666666654444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-13 Score=143.98 Aligned_cols=382 Identities=10% Similarity=-0.050 Sum_probs=212.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhhcC-----------CC-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----C
Q 005174 208 SLFVHNALVSMYGKFGQVDVARRLFDKML-----------ER-DAVSWNTMISAYASKGLWKEAFQLFVEMQEE-----G 270 (710)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g 270 (710)
....||.|...|...|++++|++.|++.. .+ ...+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45567777777888888888877776641 12 3567888888888888888888888776432 1
Q ss_pred -CCC-ceehHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCChh-HHHHHHHH---hhccCChHHHHHHHHHHHhhcCC
Q 005174 271 -VEV-NVITWNTIAGGCLRT--GNFKGVLELLSRMRTQETYLDSV-ATVIGLGA---CSHVGALKLGKEIHGSAVRGCYG 342 (710)
Q Consensus 271 -~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~-t~~~~l~~---~~~~~~~~~a~~i~~~~~~~~~~ 342 (710)
..+ ...++..+..++... +++++|++.|++..+.. |+.. .+..+..+ ....+..+.+...+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 111 123455554455443 46888888888877653 4322 22222222 334456666777776666654 3
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHH
Q 005174 343 EYENVRNALITMYS----RCKDLRHAYILFKMTA---EKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIA 415 (710)
Q Consensus 343 ~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 415 (710)
.+..++..+...+. ..|++++|.+.+++.. ..+...+..+...|...|++++|+..+++..+.. +-+..++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 34444444444443 3456777888877643 3455677788888888888888888888877653 22333443
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcC
Q 005174 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQG 492 (710)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 492 (710)
.+...+...+.... ... ...........+..+.|...|++.. ..+..+|..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR--------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH--------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 33333321111000 000 0111111122234567777777654 336678899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCChH--HHHHHHH-HhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHV--TMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAK 569 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 569 (710)
++++|+..|++..+....|... .+..+.. .....|+.++|...|++..+ +.|+........ +.+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH
Confidence 9999999999998854433321 2222222 23577999999999999875 577743332222 2233
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 570 EIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 570 ~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+++++. . .+.+..+|..|..++...|+++.|...++++++++|.+|.++.-+|
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 333332 1 2346778999999999999999999999999999999888776555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-14 Score=139.73 Aligned_cols=148 Identities=13% Similarity=0.016 Sum_probs=74.0
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 497 (710)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 445555566666665555543 33445555555555555555555555554431 2344455555555555555555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-------------hhHHHHHHHHHHhcCC
Q 005174 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-------------LEHFACMVDLYGRAGL 564 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~ 564 (710)
+..|+++.+.. +.+..++..+...+...|++++|...++++... .|+ ...+..+..+|.+.|+
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 55555554421 112344445555555555555555555555443 122 3344445555555555
Q ss_pred HHHHHHHHHh
Q 005174 565 LNKAKEIITK 574 (710)
Q Consensus 565 ~~~A~~~~~~ 574 (710)
.++|..++++
T Consensus 302 ~~~A~~~~~~ 311 (327)
T 3cv0_A 302 PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-14 Score=131.36 Aligned_cols=193 Identities=14% Similarity=0.024 Sum_probs=157.3
Q ss_pred CCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 005174 444 NEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAV 519 (710)
Q Consensus 444 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 519 (710)
+++...+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 556777888888999999999999999987643 6778899999999999999999999999884 454 5678888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHH
Q 005174 520 LSACSHS-----------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWAT 586 (710)
Q Consensus 520 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ 586 (710)
...+... |++++|...+++..+. .|+ ...+..+..+|...|++++|++.|++.- ...+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999999874 787 7889999999999999999999999872 1178889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
+..++...|+++.|...++++++++|+++..+..++.++.+.|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-13 Score=130.41 Aligned_cols=227 Identities=8% Similarity=-0.022 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CCchHHHhHHhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMF-NEHLLLWNSLVE 455 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~ 455 (710)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+++..+- .++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345556666666666666666666666554 44444444444444444444444444444432200 00000
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.....|..+...|...|++++|+..|++..+. .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00456777888888888888888888888873 4553 235566788999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
++.+.. ..|+ ...+..+...|...|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.++++.|
T Consensus 128 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 998875 4565 7788889999999999999999998872 334678888999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..++.+|...|++++|.+.++...+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-13 Score=130.23 Aligned_cols=241 Identities=8% Similarity=-0.098 Sum_probs=182.6
Q ss_pred hcCChHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChh
Q 005174 388 HLDCAEESAFLFREMFRSGVE---PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVP 464 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 464 (710)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134556666667777777777777777777764 556778888888888899999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 465 EAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 465 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
+|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99988887763 36778999999999999999999999999874 56655555555566777999999999988877
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 542 IYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 542 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
. ..++...+ .++..+...++.++|.+.+++.- ..|+ ...|..+...+...|+++.|...++++++++|++.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 5 23334444 47788888899999999998873 2222 57788899999999999999999999999999775
Q ss_pred chHHHHHHHHHhcCCchHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
.. .+.++...|++++|.+.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 44 477888999999987764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=129.84 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc----HHHHHH
Q 005174 345 ENVRNALITMYSRCKDLRHAYILFKMTAE--KSIITWNSMLSGYTHLDCAEESAFLFREMFRSG--VEPN----YVTIAS 416 (710)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~ 416 (710)
...+..+...|...|++++|...|+...+ .+...|..+...|...|++++|+..+++..+.. ..++ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678899999999999999999986532 677899999999999999999999999988753 1122 355556
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHH
Q 005174 417 ILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRV 496 (710)
Q Consensus 417 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (710)
+...+...|++++|...+..+.+.. |+ ...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---~~--------------------------------------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---RT--------------------------------------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CC--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---ch--------------------------------------hHHHHHHhHHHH
Confidence 6666666666666666666666643 21 123444455666
Q ss_pred HHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005174 497 ALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 497 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 574 (710)
|+..++++... .| +...+..+...+...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|++.+++
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666666653 23 2345555666666677777777777776653 343 56666777777777777777777766
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC------CCCCchHHHHH
Q 005174 575 MP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETR------PENSGYYVLIA 622 (710)
Q Consensus 575 m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 622 (710)
.- .+.+...|..+..++...|+.+.|...+++++++. |++...+..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 52 22346667777777777777777777777777777 66555544443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-12 Score=131.27 Aligned_cols=244 Identities=9% Similarity=0.052 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVAN-LQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467777788888888888888888888763 3345667777777888886 888888888888875 667888999999
Q ss_pred hhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc-cCcHH
Q 005174 456 MYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH-SGLVV 530 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 530 (710)
+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999998763 37788999999999999999999999999985 44 46788888888888 56657
Q ss_pred HH-----HHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 005174 531 EG-----QKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG--LLNKAKEIITKMPYTP-TSAMWATLLGACQIHR------ 595 (710)
Q Consensus 531 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~g------ 595 (710)
+| ...+++... +.|+ ...|+.+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 478888876 4787 778999999999988 6899999998875444 5677888888887764
Q ss_pred --C-hHHHHHHHHHH-HhhCCCCCchHHHHHHHHHhc
Q 005174 596 --N-TGIGEWAAEKL-LETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 596 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 628 (710)
+ .++|...++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999999999888877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=126.27 Aligned_cols=244 Identities=10% Similarity=-0.001 Sum_probs=136.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhc
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPN--YVTIASILPLCAR 423 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 423 (710)
......+...|++++|...|++..+ .+...|..+...|...|++++|+..+++....+..|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3445566666777777776665432 2344666666666666666666666666665321111 1223444444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
.|++++|...+..+.+.. +. +...|..+...|...|++++|+..|++
T Consensus 87 ~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD--TT-------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS--TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHHhcC--cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444432 22 334555555555555555566555555
Q ss_pred HHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCC--
Q 005174 504 MNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMP-- 576 (710)
Q Consensus 504 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~-- 576 (710)
..+. .|+ ...+..+...+...+++++|...|+++.+. .|+ ...+..+..++...|+ +++|...+++..
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 5543 232 333444441333344666666666666553 444 5555556666666665 555555555441
Q ss_pred --CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 577 --YTPT------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 577 --~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..|+ ..+|..+...|...|+++.|...++++++++|+++..+..+..+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 1122 24667778888889999999999999999999998887777766655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=135.69 Aligned_cols=247 Identities=10% Similarity=0.031 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005174 347 VRNALITMYSRCK----DLRHAYILFKMTAEKSIITWNSMLSGYTHLD---CAEESAFLFREMFRSGVEPNYVTIASILP 419 (710)
Q Consensus 347 ~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 419 (710)
....|...|...+ ..+.+..+++.....+...+..+...|...| +.++|+..|++..+.| .++
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~--------- 212 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT--------- 212 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC---------
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH---------
Confidence 3344455555544 3444445555555555556666666666666 5566666666655554 222
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc----CChhHHHHHHhhcCCCChhHHHHHHHH-H--HhcC
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS----GKVPEAKSVFDLMSRRDEVTYTSLIAG-Y--GIQG 492 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g 492 (710)
...+..|..+|... +++++|...|++....+...+..+... | ...+
T Consensus 213 ---------------------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 213 ---------------------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp ---------------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGC
T ss_pred ---------------------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Confidence 22223333333332 455566666655552244555555554 3 3456
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC-----cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cC
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG-----LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AG 563 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g 563 (710)
++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..
T Consensus 266 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCc
Confidence 6777777777766655 3444444444444 33 6677777766553 1235555566666655 33
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 005174 564 LLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPENSGYYVLIANMYA--ATGCWDKLAKV 637 (710)
Q Consensus 564 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 637 (710)
+.++|...|++.....+......|...|.. ..|.+.|...++++.+..+.. ....+..+.. ..++.++|.++
T Consensus 337 d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~ 414 (452)
T 3e4b_A 337 YPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRL 414 (452)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 677777777665323334444445444432 346666777777766655432 2223333322 22345555555
Q ss_pred HHHH
Q 005174 638 RTCM 641 (710)
Q Consensus 638 ~~~m 641 (710)
.+..
T Consensus 415 ~~~~ 418 (452)
T 3e4b_A 415 VQQE 418 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-10 Score=122.51 Aligned_cols=217 Identities=10% Similarity=-0.000 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHH-HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh
Q 005174 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGK-EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (710)
.+..+|++.+.. ++-+...|......+...|+.+.|. .++...+.. ++.+...+-.++...-+.|+++.|.++|++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455677777765 3446667777777777888888896 999999876 467788888899999999999999999998
Q ss_pred cCC-------------CC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHhhc-
Q 005174 473 MSR-------------RD------------EVTYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHVTMVAVLSACSH- 525 (710)
Q Consensus 473 ~~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~- 525 (710)
+.+ |+ ...|...+....+.|..+.|..+|.+..+. +. +....|......-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHh
Confidence 763 21 236888888888899999999999999875 21 122333322222223
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~g~~~~a 600 (710)
.++.+.|..+|+...+.++ -+...+...++.....|+.+.|..+|++.- ..| ....|...+..-..+|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3569999999999998732 235667889999999999999999999873 223 356899999999999999999
Q ss_pred HHHHHHHHhhCCCCCc
Q 005174 601 EWAAEKLLETRPENSG 616 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~ 616 (710)
..+.+++.+..|+++.
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-12 Score=122.25 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=130.7
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666666666666666666665542 245566667777777777777777777766642 22455666666667
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
...|++++|..+++++.. .+..|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777664 134554 5566677777777777777777776652 223466677777777777777777
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...++.+++..|++...+..++.++...|++++|.+.++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=119.03 Aligned_cols=204 Identities=10% Similarity=0.020 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 376 IITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
...|..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------------------------~~~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------------------------------------PSSADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------------------------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------------------------------CChHHHHHHHHH
Confidence 3456666666666677777777666665542 223444555555
Q ss_pred hhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHH
Q 005174 456 MYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVE 531 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 531 (710)
.|...|++++|.+.|+++. ..+...|..+...|...|++++|+.+|+++.+.+..|+ ...+..+...+...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 5555555666655555443 12455667777777778888888888888776334453 4566777777888888888
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 532 GQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLL 608 (710)
Q Consensus 532 a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 608 (710)
|..+++++... .|+ ...+..+...|.+.|++++|...++++ . .+.+...+..+...+...|+.+.|...++.+.
T Consensus 160 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888764 454 777888888889999999998888876 2 23466777788888888999999999999999
Q ss_pred hhCCCCCchHH
Q 005174 609 ETRPENSGYYV 619 (710)
Q Consensus 609 ~~~p~~~~~~~ 619 (710)
++.|+++....
T Consensus 237 ~~~p~~~~~~~ 247 (252)
T 2ho1_A 237 RLYPGSLEYQE 247 (252)
T ss_dssp HHCTTSHHHHH
T ss_pred HHCCCCHHHHH
Confidence 99998766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-12 Score=118.14 Aligned_cols=189 Identities=14% Similarity=0.028 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 379 WNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3334444444444444444444444331 1223333333334444444444444444444432 334445555555555
Q ss_pred hc-----------CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh
Q 005174 459 RS-----------GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 459 ~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 55 666666666665542 2 45566777777777777777777777777755 56667777777777
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..|++++|...|+++.+. .|+ ...+..+..++.+.|++++|++.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777653 555 666777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-12 Score=117.56 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=120.9
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555566666666666666655432 244556666666666666666666666666532 2244556666666
Q ss_pred hhcc-CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH
Q 005174 523 CSHS-GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 523 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
+... |++++|...++++.+ .+..|+ ...+..+..+|...|++++|++.++++. .+.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 6666 667777766666655 123444 4556666666667777777766666552 1224556666666666777777
Q ss_pred HHHHHHHHHHhhCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 599 IGEWAAEKLLETRP-ENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 599 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.|...++.+++..| +++..+..++.++...|+.++|..+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 6666666666666777777777766666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=7.7e-12 Score=127.03 Aligned_cols=243 Identities=8% Similarity=0.041 Sum_probs=204.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC-hhHHHHHHhhcCC---CChhHHHHHHHH
Q 005174 412 VTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK-VPEAKSVFDLMSR---RDEVTYTSLIAG 487 (710)
Q Consensus 412 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 487 (710)
..|..+..++...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|...|+++.+ .+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 445566667888999999999999999985 7778999999999999997 9999999998873 377899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh-cCC
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR-AGL 564 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~-~g~ 564 (710)
+...|++++|+..|+++++. .| +...|..+..++...|++++|...++++.+. .|+ ...|+.+..+|.+ .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999985 44 5678888999999999999999999999875 777 8889999999999 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC------
Q 005174 565 LNKA-----KEIITKM-PYTP-TSAMWATLLGACQIHR--NTGIGEWAAEKLLETRPENSGYYVLIANMYAATG------ 629 (710)
Q Consensus 565 ~~~A-----~~~~~~m-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 629 (710)
.++| ++.+++. ...| +...|..+...+...| +++.|...++.+ +.+|+++..+..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4667665 2334 6789999999988887 688899999888 889999999999999999975
Q ss_pred ---CchHHHHHHHHH-HhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHH
Q 005174 630 ---CWDKLAKVRTCM-RDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELM 688 (710)
Q Consensus 630 ---~~~~A~~~~~~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~ 688 (710)
.+++|.++++++ .+ .+|.....|..+......+
T Consensus 330 ~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHHH
Confidence 358999998887 42 5677778888776555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-11 Score=115.07 Aligned_cols=197 Identities=12% Similarity=0.024 Sum_probs=139.4
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhc-CChH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQ-GEGR 495 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~ 495 (710)
.+...|+++.|...+..+.+.. +.+...+..+...|...|++++|...|+++. ..+...|..+...|... |+++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence 3333344444444444433332 3344555566666666666666666666554 23556777788888888 8888
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 496 VALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 496 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
+|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|.+.++
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888887333444 456777888888889999999999888764 455 7788888999999999999999988
Q ss_pred hCC--CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 574 KMP--YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 574 ~m~--~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
++- .+ .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 762 23 4666777777778889999999999999999999887765544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=123.19 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+..
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHH
Confidence 344444444444444444444444444421 123334444444444555555555555544432 222 444444555
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 558 LYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.|.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 5555555555555544431 1123444444555555555555555555555555555544444433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-11 Score=125.16 Aligned_cols=341 Identities=13% Similarity=-0.014 Sum_probs=199.0
Q ss_pred HHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCCh---hHHHHhHhhCCCCCCccHHHHHHHHHhCC--
Q 005174 80 IIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLY---NNACFLVENSNIRYPLPWNLLISLYVRDG-- 154 (710)
Q Consensus 80 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 154 (710)
+...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++....++..+..+-..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3344445567777777777776665 344555566666666666 77777777765556666777666555554
Q ss_pred ---CchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCch---HHHHHHHHHH-hcCCChHHHHHHHHHHHHhcC----
Q 005174 155 ---FYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVD---FGRVVHSCID-ACHEWSLFVHNALVSMYGKFG---- 223 (710)
Q Consensus 155 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g---- 223 (710)
++++|+..|++..+.|. ...+..|-..|...+... .+...+.... .|. ...+..|...|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 56788888888777553 235555555554443322 2333333333 333 445556667777766
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhc----CChHHHHH
Q 005174 224 QVDVARRLFDKMLERDAVSWNTMISAYASKG---LWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRT----GNFKGVLE 296 (710)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~ 296 (710)
+.+.+..+++.....+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|+.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777777778888888898899 888999999998887643 334445566666554 68899999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHH-h--hccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcC-----CHHHHHHHH
Q 005174 297 LLSRMRTQETYLDSVATVIGLGA-C--SHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCK-----DLRHAYILF 368 (710)
Q Consensus 297 ~~~~m~~~~~~p~~~t~~~~l~~-~--~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~ 368 (710)
+|++.. .| +...+..+-.. + ...++.++|...+....+.| +......|..+|. .| ++++|...|
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 999887 33 22223233222 2 45788888888888887766 4556666777776 44 888888888
Q ss_pred HhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----ccCchHHHHHHHHHHHHh
Q 005174 369 KMTAEKSIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPLCA----RVANLQHGKEFHCYILRR 440 (710)
Q Consensus 369 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 440 (710)
+.....+...+..|...|.. ..++++|...|++..+.|. |+. ...+-..|. ...+..+|...+....+.
T Consensus 311 ~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 87774456677777766665 3377888888888777663 222 222222222 233566666666666655
Q ss_pred C
Q 005174 441 A 441 (710)
Q Consensus 441 ~ 441 (710)
|
T Consensus 388 g 388 (452)
T 3e4b_A 388 D 388 (452)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-12 Score=122.19 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=154.9
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLS 521 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 521 (710)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456677888888999999999999988754 367788899999999999999999999998753 335778888889
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
.+...|++++|..+++++.+. .| +...+..+...|.+.|++++|.+.++++. .+.+...|..+...+...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999875 34 47889999999999999999999999873 3346788999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.|...++.+++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999988753
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-11 Score=117.36 Aligned_cols=224 Identities=11% Similarity=-0.057 Sum_probs=124.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+.+..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 45566666667777777777777777766632 23344444444444 555555555555544433
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc-
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH- 525 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 525 (710)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34444455555555 555555555555555543 44445555555555
Q ss_pred ---cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 005174 526 ---SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMPYTPTSAMWATLLGACQI----H 594 (710)
Q Consensus 526 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~ 594 (710)
.+++++|..+|++..+. + +...+..+..+|.. .+++++|++.+++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 55666666666555542 1 33445555555555 55666666666554222344555555555555 6
Q ss_pred CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 005174 595 RNTGIGEWAAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 595 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 645 (710)
+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666666544 4556666666666 666666666666555433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-11 Score=116.15 Aligned_cols=227 Identities=10% Similarity=-0.047 Sum_probs=162.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005174 343 EYENVRNALITMYSRCKDLRHAYILFKMTAEK-SIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASI 417 (710)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 417 (710)
.+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35567788889999999999999999987654 56788889999999 999999999999999876 56666666
Q ss_pred HHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh---
Q 005174 418 LPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI--- 490 (710)
Q Consensus 418 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--- 490 (710)
...+.. .+++++|...+....+.+ +...+..+...|..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCC
Confidence 666666 666666666666655543 33445555555555
Q ss_pred -cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc----cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----
Q 005174 491 -QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR---- 561 (710)
Q Consensus 491 -~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 561 (710)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|..
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 667777777777766654 34455555555655 67777777777777653 235566677777777
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhhCCCC
Q 005174 562 AGLLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.+++++|++.+++.....+...+..+...+.. .++.++|...++++.+++|++
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77888888777766322336666777777777 788888888888888887754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-11 Score=116.34 Aligned_cols=240 Identities=10% Similarity=-0.016 Sum_probs=169.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHH
Q 005174 312 ATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE--KSI----ITWNSMLSG 385 (710)
Q Consensus 312 t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~ 385 (710)
.+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+...+ .+. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455677888999999999999998865 34555788889999999999999999987654 222 348899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
|...|++++|+..|++..+.. +.+... +..+...|...|++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~------------------------------------~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDM------------------------------------YGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHH------------------------------------HHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHH------------------------------------HHHHHHHHHHccCHHH
Confidence 999999999999999998863 122233 3445555666777777
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCc---HHHHHHHHHH
Q 005174 466 AKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGL---VVEGQKQFER 538 (710)
Q Consensus 466 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 538 (710)
|...|++..+. +...|..+...+...+++++|+..|+++.+. .|+ ...+..+...+...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 77777766642 4556666662333445888888888888774 344 5566666666666666 7778888877
Q ss_pred HHHHhCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 539 MTSIYGIFPQ------LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 539 ~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
+.+...-.|+ ...|..+...|.+.|++++|.+.+++.- ..| +...+..+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 7765333344 2567778888888888888888888772 233 455555544433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-11 Score=110.32 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=138.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+...|..+...|...|++++|+..|++..+. .| +..++..+..++.+.|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4567888888889999999999999998874 44 4667888888888999999999999888764 555 677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
+...+...+++++|.+.+++.. .+.+...|..+...+...|++++|...++++++++|+++..|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999888762 33467788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 005174 633 KLAKVRTCMRDL 644 (710)
Q Consensus 633 ~A~~~~~~m~~~ 644 (710)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.2e-12 Score=122.72 Aligned_cols=242 Identities=11% Similarity=-0.062 Sum_probs=184.0
Q ss_pred hCCCchHHHHHHHHhHHhCCCC-CchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhH
Q 005174 49 GRGNLSKAFEAFTRIRITAASH-DVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNN 127 (710)
Q Consensus 49 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 127 (710)
..|++++|+..|+++....... ......+..+..++...|+++.|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4588999999999998764322 1223478888899999999999999999999886 5567889999999999999999
Q ss_pred HHHhHhhCC---CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhc
Q 005174 128 ACFLVENSN---IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC 204 (710)
Q Consensus 128 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g 204 (710)
|...|++.. +.+...|..+...|.+.|++++|+..|+++.+ +.|+.......+..+...|+.+.|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998754 44667899999999999999999999999987 3566665555666667778889999888777744
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceeh
Q 005174 205 HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD-------AVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVIT 277 (710)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 277 (710)
.+++...+. ++..+...++.++|...++...+.+ ...|..+...|.+.|++++|...|++.... .|+.
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 445555554 6677778888889999988886642 467788888888889999999998888764 3422
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 005174 278 WNTIAGGCLRTGNFKGVLELL 298 (710)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~ 298 (710)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333345666677777776655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-12 Score=134.35 Aligned_cols=204 Identities=8% Similarity=-0.025 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCCh-hHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKV-PEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEE 503 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (710)
+.+...+...... .+.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++
T Consensus 85 ~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443333 345677788888888888888 888888887652 3577899999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc--------CCH
Q 005174 504 MNKNQIKPDHVTMVAVLSACSHS---------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--------GLL 565 (710)
Q Consensus 504 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~ 565 (710)
..+. .|+...+..+...+... |++++|...+++..+. .|+ ...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9874 57778888888899998 9999999999999875 676 88899999999999 999
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 566 NKAKEIITKMP-YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 566 ~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++|++.|++.- ..| +...|..+..++...|+++.|...++++++++|+++..+..++.++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999873 344 78899999999999999999999999999999999999999999999999999998754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=129.25 Aligned_cols=259 Identities=11% Similarity=-0.001 Sum_probs=156.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPNY----VTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVE 455 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~ 455 (710)
..+...|++++|+..|++..+.+.. +. ..+..+...+...|+++.|...+...++. +..+....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344444444444444444443211 11 23333334444444444444444444332 101122344555566
Q ss_pred hhhhcCChhHHHHHHhhcCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC--
Q 005174 456 MYARSGKVPEAKSVFDLMSRR---------DEVTYTSLIAGYGIQGE-----------------GRVALKLFEEMNKN-- 507 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~-- 507 (710)
.|...|++++|...|++..+. ...+|..+...|...|+ +++|+..+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554321 23356667777777777 77777777765431
Q ss_pred --CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 005174 508 --QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP---- 576 (710)
Q Consensus 508 --g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 576 (710)
+-.+ ...++..+...+...|++++|..++++......-.++ ...+..+..+|...|++++|.+.+++.-
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1111 1236666777788888888888888887654211112 2367788888888888888888887652
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
... ...++..+...+...|+++.|...+++++++.++. ...|..++.+|.+.|++++|.+.++....
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14567777788888899999988888888775432 34788899999999999999998887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=128.27 Aligned_cols=272 Identities=13% Similarity=0.017 Sum_probs=124.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHH
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKMTAE--K-S----IITWNSMLSGYTHLDCAEESAFLFREMFRS----GVEPN-YVT 413 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t 413 (710)
..+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|...+++.... +-.|. ..+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445555666667777777777665432 1 2 235556666666667777776666665432 11111 223
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc----hHHHhHHhhhhhhcCC-------------hhHHHHHHhhcCCC
Q 005174 414 IASILPLCARVANLQHGKEFHCYILRRAMFNEH----LLLWNSLVEMYARSGK-------------VPEAKSVFDLMSRR 476 (710)
Q Consensus 414 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~~~~~ 476 (710)
+..+...+...|+++.|...+....+...-..+ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~------- 162 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA------- 162 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH-------
Confidence 444444555555555555555554443200011 2244444444444444 0000000
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--- 548 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--- 548 (710)
+++|+..+++..+. +-.|. ..++..+...+...|++++|...+++..+...-.++
T Consensus 163 -----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 163 -----------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 44444444443321 10111 123444444455555555555555554432111111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----
Q 005174 549 -LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN----- 614 (710)
Q Consensus 549 -~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----- 614 (710)
...+..+...|...|++++|...+++.- ..++ ..++..+...+...|+++.|...++.++++.+..
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 305 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH
Confidence 1244455555555555555555554431 0011 2344444455555555555555555555443222
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 615 -SGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 615 -~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
...+..++.+|...|++++|.+.+++.
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334555555555555555555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=132.07 Aligned_cols=296 Identities=12% Similarity=0.009 Sum_probs=202.2
Q ss_pred ChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----Ch
Q 005174 309 DSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEY---ENVRNALITMYSRCKDLRHAYILFKMTAE-----K----SI 376 (710)
Q Consensus 309 ~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~----~~ 376 (710)
....+...-..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++... . ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344556667778899999999999999998753322 35678889999999999999999886532 1 24
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCc--------------------hHHHH
Q 005174 377 ITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPN----YVTIASILPLCARVAN--------------------LQHGK 431 (710)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~ 431 (710)
.++..+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5788889999999999999999998876421 112 3366677778888888 66666
Q ss_pred HHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 432 EFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR--DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
..+....+. +.....+ ...+|..+...|...|++++|+..|++..+...
T Consensus 168 ~~~~~al~~-----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 168 DFYEENLSL-----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 666555432 1111110 123455566666666777777666666554210
Q ss_pred -CCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----
Q 005174 510 -KPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP---- 576 (710)
Q Consensus 510 -~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 576 (710)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++.-
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 111 225666677777778888888877776643211111 4567778888888888888888877651
Q ss_pred CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCchH
Q 005174 577 YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRP------ENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 577 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 633 (710)
..++ ..++..+...+...|+++.|...+++++++.+ .....+..++.+|...|+...
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1122 45677777888888999999999888887733 235678888888888887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=124.44 Aligned_cols=260 Identities=13% Similarity=0.033 Sum_probs=164.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCCchHHHhHHhh
Q 005174 384 SGYTHLDCAEESAFLFREMFRSGVEPN----YVTIASILPLCARVANLQHGKEFHCYILRR----AMFNEHLLLWNSLVE 455 (710)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~ 455 (710)
..+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+...... +..+....++..+..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 334444444555544444444321 11 123334444444455555555544443322 101112345566666
Q ss_pred hhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGE--------------------GRVALKLFEEMNK 506 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 506 (710)
.|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66677777777766665432 11 2366677777777777 7778777776553
Q ss_pred C----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 005174 507 N----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP- 576 (710)
Q Consensus 507 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~- 576 (710)
. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11111 335667777788889999999888887654211112 3377888889999999999998888762
Q ss_pred ---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 577 ---YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 577 ---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..++ ..++..+...+...|+++.|...++.++++.|.. ...+..++.+|.+.|++++|.+.+++...
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1112 4567778888999999999999999988875543 44788999999999999999999988775
Q ss_pred C
Q 005174 644 L 644 (710)
Q Consensus 644 ~ 644 (710)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-09 Score=113.66 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=144.8
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 329 GKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAY-ILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 329 a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+++..+... +....+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|..+|++++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555432 345556666666666666666664 66665432 2444566666666667777777777777665
Q ss_pred cCC---------CCc------------HHHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCCchHHHhHHhhhhhhc-C
Q 005174 405 SGV---------EPN------------YVTIASILPLCARVANLQHGKEFHCYILRR-AMFNEHLLLWNSLVEMYARS-G 461 (710)
Q Consensus 405 ~g~---------~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-g 461 (710)
... .|+ ...|...+....+.|..+.|+.+|..+++. +...+.. |...+.+-.++ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l--yi~~A~lE~~~~~ 484 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI--YLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH--HHHHHHHHHTTTS
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHhCC
Confidence 310 131 235666777777778888888888888876 3223333 33333333344 4
Q ss_pred ChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--ChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 462 KVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP--DHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 462 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
+.+.|..+|+...+ .+...|...+......|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48888888887764 356677778887778888888999998887753222 2346777777677788888899998
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRA 562 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~ 562 (710)
+++.+. .|+......+++-|.-.
T Consensus 565 ~R~~~~---~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 565 KRFFEK---FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHH---STTCCHHHHHHHHTCBT
T ss_pred HHHHHh---CCCCcHHHHHHHHhcCC
Confidence 888876 56655555556655433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-10 Score=110.25 Aligned_cols=219 Identities=10% Similarity=0.079 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 393 EESAFLFREMFRSGVEPNYVTIASILPLCA-------RVANL-------QHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 393 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
++|..+|++.+... +-+...|......+. ..|++ ++|..++++.++.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45666666666542 233444444444443 24654 77888888877742 2456678888888888
Q ss_pred hcCChhHHHHHHhhcCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhh-ccCcHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSR--R-DEV-TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACS-HSGLVVEGQ 533 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~ 533 (710)
+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888889888887764 2 343 78888888888999999999999988753 233444544333322 368999999
Q ss_pred HHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 534 KQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP--TSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 534 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
.+|++..+. .|+ ...|..++..+.+.|++++|..+|++.- ..| ....|..++.....+|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998875 454 7788888999999999999999998872 244 466888888888889999999999999
Q ss_pred HHhhCCCCCch
Q 005174 607 LLETRPENSGY 617 (710)
Q Consensus 607 ~~~~~p~~~~~ 617 (710)
+.+..|++...
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999986543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.6e-11 Score=129.98 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+..+|+.|...|.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|...|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3457788888888888888888888888873 555 667888888889999999999999988864 777 788899
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 555 MVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999876 2344 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005174 633 KLAKVRTCMR 642 (710)
Q Consensus 633 ~A~~~~~~m~ 642 (710)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=124.75 Aligned_cols=262 Identities=11% Similarity=0.031 Sum_probs=161.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCcHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAE--K-SI----ITWNSMLSGYTHLDCAEESAFLFREMFRS----GV-EPNYVTIASILP 419 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~ 419 (710)
...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..+++..+. +- ......+..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344444555555555544322 1 11 23444455555555555555555544332 10 111233444444
Q ss_pred HHhccCchHHHHHHHHHHHHhC----CCCCchHHHhHHhhhhhhcCC-----------------hhHHHHHHhhcCC---
Q 005174 420 LCARVANLQHGKEFHCYILRRA----MFNEHLLLWNSLVEMYARSGK-----------------VPEAKSVFDLMSR--- 475 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~--- 475 (710)
.+...|+++.|...+..+++.. ..+....++..+...|...|+ +++|...+++..+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544331 011223456666667777777 6777666665432
Q ss_pred ----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 005174 476 ----R--DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYG 544 (710)
Q Consensus 476 ----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 544 (710)
+ ....|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++|...+++......
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1 2346777888888899999999988887653110 12 22677788888999999999999988876421
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 545 IFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP----TSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 545 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
-..+ ...+..+..+|...|++++|.+.+++.. ..+ ...++..+...+...|+++.|...+++++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 4678889999999999999999998762 111 134677788889999999999999999998865
Q ss_pred C
Q 005174 613 E 613 (710)
Q Consensus 613 ~ 613 (710)
.
T Consensus 375 ~ 375 (411)
T 4a1s_A 375 X 375 (411)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-11 Score=118.04 Aligned_cols=265 Identities=14% Similarity=0.023 Sum_probs=154.5
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHH
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEY---ENVRNALITMYSRCKDLRHAYILFKMTAE---------KSIITWNSMLS 384 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~ 384 (710)
-..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++... .....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3445555666666666666655432211 23445555555556666665555544321 01234444455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC-
Q 005174 385 GYTHLDCAEESAFLFREMFRSGV-EPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK- 462 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~- 462 (710)
.|...|++++|...+++..+... .++. .....++..+...|...|+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------VGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH--------------------------------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCc--------------------------------hHHHHHHHHHHHHHHHcCcc
Confidence 55555555555555554433210 0010 0012244555555555555
Q ss_pred -------------------hhHHHHHHhhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-
Q 005174 463 -------------------VPEAKSVFDLMSR-----R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPD- 512 (710)
Q Consensus 463 -------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 512 (710)
+++|...+++... . ....+..+...|...|++++|+..+++..+... .++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 5555555554321 1 233667777788888888888888887664210 011
Q ss_pred ---hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-
Q 005174 513 ---HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT- 580 (710)
Q Consensus 513 ---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~- 580 (710)
..++..+...+...|++++|..++++......-.++ ...+..+...|...|++++|...+++.- ..++
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 226677777788888999988888887654211112 4567788888999999999988887762 1111
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 581 ---SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 581 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
..++..+...+...|+++.|...+++++++.++
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 346777888889999999999999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=103.94 Aligned_cols=166 Identities=12% Similarity=0.016 Sum_probs=139.8
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA 522 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 522 (710)
++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... .-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788889999999999999999987763 367788999999999999999999999988753 2245567777778
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~g~~~~ 599 (710)
+...++++.+...+.+.... .|+ ...+..+..+|.+.|++++|++.|++.- . +.+..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88899999999999998864 565 7788999999999999999999998872 2 3467889999999999999999
Q ss_pred HHHHHHHHHhhCCCCC
Q 005174 600 GEWAAEKLLETRPENS 615 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~ 615 (710)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=109.30 Aligned_cols=186 Identities=12% Similarity=-0.032 Sum_probs=105.0
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSR----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVL 520 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 520 (710)
++..+..+...|.+.|++++|...|++..+ ++...+..+..+|...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445566666666666666666666665442 44555555666666666666666666666653 333 34555566
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-L-------EHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLL 588 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~ 588 (710)
..+...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|++.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 6666666666666666666553 343 3 34555566666666666666666655 23343 33444454
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.++... +...++.+..+.+.+...|.. ......|.+++|...+++..+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 444333 333445555555544333322 223344556888888887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.4e-10 Score=110.37 Aligned_cols=212 Identities=9% Similarity=0.036 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhh-------cCCh-------hHHHHHHhhcCC---C-ChhHHHHHHHHHH
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYAR-------SGKV-------PEAKSVFDLMSR---R-DEVTYTSLIAGYG 489 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~ 489 (710)
+.|..+|+++++.. +.++.+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 57778888888874 7778888888888763 5886 899999998764 3 5668999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH-hcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDH-V-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYG-RAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~-~~g~~ 565 (710)
+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+ ..|+ ...|...+.... ..|+.
T Consensus 111 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999998 45653 3 788889889999999999999999985 3454 555554444433 36999
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCCchHHHHHHH
Q 005174 566 NKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET---RPE-NSGYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 566 ~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
++|.++|++.- .+.+...|..++..+...|+.+.|...++++++. .|+ ....|..++..+.+.|++++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999872 2346889999999999999999999999999995 553 56788999999999999999999999
Q ss_pred HHHhCCC
Q 005174 640 CMRDLGV 646 (710)
Q Consensus 640 ~m~~~~~ 646 (710)
++.+...
T Consensus 266 ~a~~~~p 272 (308)
T 2ond_A 266 RRFTAFR 272 (308)
T ss_dssp HHHHHTT
T ss_pred HHHHHcc
Confidence 8876554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=118.91 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHh------CCCC
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRS-------GVEPNYVTIASILPLCARVANLQHGKEFHCYILRR------AMFN 444 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 444 (710)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555556666666555555442 11112233344444444455555555544444432 1011
Q ss_pred CchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHH
Q 005174 445 EHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN------QIKP-DHVTMV 517 (710)
Q Consensus 445 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~ 517 (710)
....++..+...|...|++++|...|++ +.+. +-.| ....+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------------------a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKR-------------------------------ALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------------------HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHH-------------------------------HHHHHHHhcCCCChHHHHHHH
Confidence 2233444455555555555555555444 3321 1111 122344
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----------YTPT- 580 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~- 580 (710)
.+...+...|++++|..+++++.... +..|. ...+..+..+|.+.|++++|.+.++++. ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 44445555555555555555554321 01222 3345555555555555555555555431 0010
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 581 ------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 581 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
...+..+...+...+.+..+...++......|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111112222233444444555566666666676777777888888888888888877776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-10 Score=101.67 Aligned_cols=161 Identities=16% Similarity=0.056 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++++.+. .|+ ...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Confidence 34455556666666666666666665431 224555666666666677777777777766653 343 5666677777
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 559 YGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
|...|++++|.+.++++. .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776652 234566777777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 005174 637 VRTCMRDL 644 (710)
Q Consensus 637 ~~~~m~~~ 644 (710)
.++...+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-10 Score=116.32 Aligned_cols=224 Identities=9% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHhccCchHHHHHHHHHHHHhCCCCC----chHHHhHHhhhhhhcCChhHHHHHHhhcCC-----C-----ChhHHHHHH
Q 005174 420 LCARVANLQHGKEFHCYILRRAMFNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----R-----DEVTYTSLI 485 (710)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li 485 (710)
.+...|+++.|...+....+...-.+ ...++..+...|...|++++|...+++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34445555555555555554310111 234556666666666666666666655431 1 123666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LEHFACMV 556 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li 556 (710)
..|...|++++|+..|++..+.... ++ ..++..+...|...|++++|...+++..+.. +..|. ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 7777777887777777776642100 11 2356667777778888888888877776521 12244 56677788
Q ss_pred HHHHhcCCHHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCCCCchHHHHHHHHHh
Q 005174 557 DLYGRAGLLNKAKEIITKMP------YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANMYAA 627 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~ 627 (710)
.+|.+.|++++|.+.+++.- ..|. ...+..+...+...|+.+...++++.+.+. .|.....+..++.+|..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 88888888888887777651 1121 223455556667777743333333333333 23335567788888888
Q ss_pred cCCchHHHHHHHHHHh
Q 005174 628 TGCWDKLAKVRTCMRD 643 (710)
Q Consensus 628 ~g~~~~A~~~~~~m~~ 643 (710)
.|++++|.+.+++...
T Consensus 352 ~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-10 Score=113.65 Aligned_cols=230 Identities=9% Similarity=-0.059 Sum_probs=162.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-----chHHHhH
Q 005174 383 LSGYTHLDCAEESAFLFREMFRS----GVEP-NYVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-----HLLLWNS 452 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 452 (710)
...+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+...-.+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455666666666666666543 1111 123455555566666677766666666655321111 1346777
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHH
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKP-DHVTMVA 518 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ 518 (710)
+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..|++..+. +..| ...++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88888888888888888877652 11 247888999999999999999999998762 2323 3557888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGI--FPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMPYTPT-SAMWATLLGAC 591 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~ 591 (710)
+...+...|++++|...+++......- .|. ...+..+...|...|+ +++|+.++++....|+ ...+..+...|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888999999999999999988764211 222 3346778889999999 9999999999865443 34667788889
Q ss_pred HhcCChHHHHHHHHHHHhhCC
Q 005174 592 QIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p 612 (710)
...|+++.|...+++++++..
T Consensus 350 ~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-10 Score=119.68 Aligned_cols=177 Identities=8% Similarity=-0.047 Sum_probs=155.4
Q ss_pred hhHHHHHHhhcCC---CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEG-RVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 463 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
++++...++.... .+...|..+...|...|++ ++|+..|++..+. .|+ ...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665442 3678899999999999999 9999999999885 444 7789999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CChH
Q 005174 538 RMTSIYGIFPQLEHFACMVDLYGRA---------GLLNKAKEIITKMP--YTPTSAMWATLLGACQIH--------RNTG 598 (710)
Q Consensus 538 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~--------g~~~ 598 (710)
+..+ +.|+...+..+..+|... |++++|++.+++.- .+.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 578888899999999999 99999999999872 234688999999999988 9999
Q ss_pred HHHHHHHHHHhhCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 599 IGEWAAEKLLETRP---ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 599 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.|...++++++++| +++..|..++.+|...|++++|.+.+++....
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-08 Score=102.36 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=120.2
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--ChH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR----------R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK--P--DHV 514 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 514 (710)
+..+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44455556666666666666654431 1 1234555666777778888888877776653211 1 123
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFA-----CMVDLYGRAGLLNKAKEIITKMP-YTPT-----SAM 583 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~~~ 583 (710)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 556666677777888888888887765421111111111 23344667888888888888773 1111 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..+...+...|+++.|...++.+.+..+.. ...+..++.+|...|+.++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666677778888888888888777654321 23667778888888888888888776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=101.47 Aligned_cols=205 Identities=12% Similarity=0.054 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHH
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLI 485 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 485 (710)
.|...+......+...|++++|...+..+++.. .+++...+..+..+|.+.|++++|...|++..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 456777888888999999999999999999986 3377778888999999999999999999987643 566899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---hhHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPD-H-------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---LEHFAC 554 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 554 (710)
..|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999884 444 3 3577777888899999999999999875 5776 567788
Q ss_pred HHHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 555 MVDLYGRAGLL--NKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 555 li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
+..+|...|+. ++|..+. ..+...+.... ....++++.|...++++++++|+++.....+..+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88888776653 3332221 22334443333 345577899999999999999999888777766543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=115.67 Aligned_cols=254 Identities=15% Similarity=0.085 Sum_probs=141.9
Q ss_pred hcccccCCCCCCcchhhhhHHHHHHHHHhCCCchHHHHHHHHhHHh-----CCCCCchhhHHHHHHHHhcccCchHhHHH
Q 005174 21 FIPKKWKQPINNEHIMRINLLETLKDFAGRGNLSKAFEAFTRIRIT-----AASHDVVLDSFAHIIFCCGKVKALAQGKQ 95 (710)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 95 (710)
.....++......+.....+..+...|...|++++|+..|+++.+. +..+......+..+...+...|+++.|..
T Consensus 11 ~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 11 RENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp GGGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666777777888899999999999999999999999998763 11222222367778888888899999888
Q ss_pred HHHHHHHh------CC-CCCCchhhHHHHHHHccCChhHHHHhHhhCCC-------C----CCccHHHHHHHHHhCCCch
Q 005174 96 LHACAIAL------GL-EKNPVLVPKLVTFYASFSLYNNACFLVENSNI-------R----YPLPWNLLISLYVRDGFYA 157 (710)
Q Consensus 96 ~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~ 157 (710)
.+..+++. +- +....++..+...|...|++++|...|++... + ....|..+...|...|+++
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 88887765 11 12234555666666666666666666654211 0 1122444444444445555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005174 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDAC-HEWSLFVHNALVSMYGKFGQVDVARRLFDKML 236 (710)
Q Consensus 158 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (710)
+|+..|++..+.- .....+ .+....++..+...|...|++++|...|++..
T Consensus 171 ~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 171 EVEYYYQRALEIY----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHH----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5544444443210 000001 11233456666777777777777777776663
Q ss_pred CC------------------ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHH
Q 005174 237 ER------------------DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELL 298 (710)
Q Consensus 237 ~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 298 (710)
+. ....+..+...+...+.+.++...+...... .+.+..+|..+...|.+.|++++|.+.|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 1111222223333444455555555554332 1224456677777777777777777777
Q ss_pred HHHHh
Q 005174 299 SRMRT 303 (710)
Q Consensus 299 ~~m~~ 303 (710)
++..+
T Consensus 302 ~~al~ 306 (311)
T 3nf1_A 302 EAAMR 306 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=108.98 Aligned_cols=222 Identities=9% Similarity=-0.032 Sum_probs=130.2
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCC----chHHHhHHhhhhhhcCChhHHHHHHhhcCC-----C-----ChhHHHHHHH
Q 005174 421 CARVANLQHGKEFHCYILRRAMFNE----HLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----R-----DEVTYTSLIA 486 (710)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 486 (710)
+...|+++.|...+..+.+.....+ ...++..+...|...|+++.|...+++..+ + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3455666666666666554321111 234566666666777776666666655431 1 1335667777
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--CCCC-hhHHHHHHHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKN----QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYG--IFPQ-LEHFACMVDL 558 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~li~~ 558 (710)
.|...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+++...... ..|. ..++..+..+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777777777777777776542 1111 123566666777777888888877777765211 2333 5567777778
Q ss_pred HHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh--CCCCCchHHHHHHHHHhcC
Q 005174 559 YGRAGLLNKAKEIITKM----PY--TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET--RPENSGYYVLIANMYAATG 629 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 629 (710)
|.+.|++++|...+++. +. .|. ...+..+...+...++.+...++++.+.+. .|+....+..++.+|...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCC
Confidence 88888888887777765 11 222 233444445555666633333333333332 2233456677888888888
Q ss_pred CchHHHHHHHHHH
Q 005174 630 CWDKLAKVRTCMR 642 (710)
Q Consensus 630 ~~~~A~~~~~~m~ 642 (710)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888888877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-09 Score=95.68 Aligned_cols=168 Identities=8% Similarity=-0.071 Sum_probs=143.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
...+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455777888899999999999999988753 67788999999999999999999999998752 33567888888899
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~ 601 (710)
...|++++|..+++++... ...+...+..+..+|.+.|++++|.+.+++.. .+.+...|..+...+...|+.+.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 22347888999999999999999999998872 3346788999999999999999999
Q ss_pred HHHHHHHhhCCCCCch
Q 005174 602 WAAEKLLETRPENSGY 617 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~ 617 (710)
..++.++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-08 Score=101.05 Aligned_cols=227 Identities=9% Similarity=-0.024 Sum_probs=157.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-----chHHHhH
Q 005174 383 LSGYTHLDCAEESAFLFREMFRSGV-EPN----YVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-----HLLLWNS 452 (710)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ 452 (710)
...+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+....+...-.+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566677777777666654310 112 23455555566667777777776666654321111 2446677
Q ss_pred HhhhhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 005174 453 LVEMYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNK-----NQIKPDHVTMVA 518 (710)
Q Consensus 453 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 518 (710)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 78888888888888888876543 12 34677888899999999999999998876 32 223567788
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCC--CCC-hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGI--FPQ-LEHFACMVDLYGRAGL---LNKAKEIITKMPYTPT-SAMWATLLGAC 591 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~l~~~~ 591 (710)
+...+.+.|++++|..++++..+...- .|. ...+..+...|...|+ +++|+..+++....|+ ...+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999998875322 222 4456777777888888 8999999998764443 34556777889
Q ss_pred HhcCChHHHHHHHHHHHhh
Q 005174 592 QIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~ 610 (710)
...|+++.|...+++++++
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999888765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=97.96 Aligned_cols=204 Identities=9% Similarity=-0.017 Sum_probs=119.7
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcCCC---C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-hHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---D---EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI-KPD-HVTMV 517 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 517 (710)
+...+-.+...+.+.|++++|...|+++.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444555555555556666666666555421 2 33455555555555666666666655555211 111 22334
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005174 518 AVLSACSH--------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLL 588 (710)
Q Consensus 518 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~ 588 (710)
.+..++.. .|++++|...|+++... .|+ .....++.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44444444 55555555555555543 233 11121111111000000 01135667
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCcCCCCeeEE
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMYAAT----------GCWDKLAKVRTCMRDLGVRKIPGCAWV 655 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 655 (710)
..+...|+++.|...++.+++..|++ +..+..++.+|... |++++|.+.++.......
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 88899999999999999999999985 45789999999977 899999999998876332
Q ss_pred EECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
.+|.....+..+.++...+++
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556677777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-09 Score=116.90 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=137.9
Q ss_pred CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 005174 443 FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVA 518 (710)
Q Consensus 443 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 518 (710)
.+.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|+..|++..+. .|+ ...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 345567788888888899999999988887653 36778888999999999999999999998874 555 668888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
+..++...|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..|..++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 888999999999999999998864 777 788999999999999999999999886 3344 5778888999999999
Q ss_pred ChHHHHHHHHHHHhhCCC
Q 005174 596 NTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~ 613 (710)
+.+.|.+.+++++++.|+
T Consensus 160 ~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 160 DWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhChh
Confidence 999999999998887543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-07 Score=95.25 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCce----ehHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 246 MISAYASKGLWKEAFQLFVEMQEEGVEVNV----ITWNTIAGGCLRTGNFKGVLELLSRMRT 303 (710)
Q Consensus 246 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (710)
....+...|++++|...+++........+. .+++.+...+...|++++|...+++...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334556677777777777776654321111 1344555566666777777766666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=6.4e-09 Score=101.40 Aligned_cols=222 Identities=14% Similarity=0.141 Sum_probs=153.4
Q ss_pred hccCchHHHHHHHHHHHHhC------CCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-------C----ChhHHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRA------MFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-------R----DEVTYTSL 484 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 484 (710)
...|+++.|...+...++.- ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 35677777877777776531 0234567888899999999999999999987652 1 34578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN------QIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEH 551 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 551 (710)
...|...|++++|+..|++..+. .-.| ...++..+...+...|++++|..+++++.... +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 24577788888899999999999999887641 11343 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcCChHHHHH------HHHHHHhhCCCC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP----------YTP-TSAMWATLLGACQIHRNTGIGEW------AAEKLLETRPEN 614 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~p~~ 614 (710)
+..+..+|.+.|++++|.+.+++.. ..+ ....|..+.......+....+.. .++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999988762 122 22233333333333332222211 111111223445
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 615 SGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999987654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-07 Score=89.57 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=112.5
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 466 AKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 466 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555665542 344555667777777888888888887776544322 344666677777788888888888888765
Q ss_pred HhCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh-
Q 005174 542 IYGIFP-----QLEHFACMVDL--YGRAG--LLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET- 610 (710)
Q Consensus 542 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 610 (710)
. .| +..+...|+.+ ....| ++++|..+|+++. ..|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 23344444444 22233 7888888888773 3344333334444677778888888888877665
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 611 ---------RPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 611 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+|+++.++..++.+....|+ +|.+++.++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77777777775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=93.17 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=106.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA 562 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 562 (710)
...+...|++++|+..+++.... .|+ ...+..+...|...|++++|.+.|++..+. .|+ ...|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34455667778888887776542 333 334556777788888888888888888764 676 77888888888888
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 563 GLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEW-AAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 563 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
|++++|+..|++. ...| +..+|..+...+...|+.+.+.+ .++++++++|+++..|...+.++.+.|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876 2344 57788888888888888866555 4689999999999999999999988885
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9e-08 Score=89.79 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=110.3
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR--RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHV----TMV 517 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 517 (710)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3445555666677777777777776653 21 235666667777777777777777776653 23221 233
Q ss_pred HHHHHhhc------------------cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 005174 518 AVLSACSH------------------SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYT 578 (710)
Q Consensus 518 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 578 (710)
.+..++.. .|++++|...|+++.+. .|+ ...+.+...+.. .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH---------
Confidence 33333322 34555555555555532 343 222211111000 00000
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS---GYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
......+...+...|+++.|...++.+++..|+++ ..+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455668889999999999999999999875 67999999999999999999999998876654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=96.15 Aligned_cols=203 Identities=13% Similarity=0.027 Sum_probs=147.5
Q ss_pred CcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCc---hHHHhHHhhhhhhcCChhHHHHHHhhcCC--C----Chh
Q 005174 409 PNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEH---LLLWNSLVEMYARSGKVPEAKSVFDLMSR--R----DEV 479 (710)
Q Consensus 409 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~ 479 (710)
.+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|++..+ | ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 455667777778889999999999999999875 333 67888999999999999999999998864 2 234
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChh
Q 005174 480 TYTSLIAGYGI--------QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLE 550 (710)
Q Consensus 480 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 550 (710)
.+..+..++.. .|++++|+..|++..+. .|+.. ....+ ..+...... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999884 45432 22111 111111111 012
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhhCCCCC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-YTP----TSAMWATLLGACQIH----------RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.+..+...|.+.|++++|+..|+++- ..| ....+..+..++... |+++.|...++.+++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 25667888889999999998888762 223 245666777777655 888999999999999999985
Q ss_pred ---chHHHHHHHHHhcCCchHH
Q 005174 616 ---GYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 616 ---~~~~~l~~~~~~~g~~~~A 634 (710)
..+..+..++.+.|+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666665544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=99.99 Aligned_cols=187 Identities=11% Similarity=-0.003 Sum_probs=131.0
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hHHHHHH
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR-----D----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI---KPD--HVTMVAV 519 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~l 519 (710)
...|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..|++..+... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566778888888887765421 1 45788888999999999999999888775211 111 3477788
Q ss_pred HHHhhcc-CcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CH-----HHHH
Q 005174 520 LSACSHS-GLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---TS-----AMWA 585 (710)
Q Consensus 520 l~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~-----~~~~ 585 (710)
...|... |++++|...|++..+.+.-..+ ..++..+...|.+.|++++|+..|++.. ..| .. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 9999999999998764211111 3568889999999999999999998862 222 21 1567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHH
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGY-----YVLIANMYA--ATGCWDKLAKVRTC 640 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~ 640 (710)
.+..++...|+++.|...++++++++|+.... +..++..+. ..+++++|.+.++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 77778889999999999999999999986543 344556664 45678888776543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=98.68 Aligned_cols=175 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhccCchHHHHHHH
Q 005174 360 DLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS----GVEPN-YVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
++++|...|+.. ...|...|++++|+..|.+.... |-.++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766543 66677788888888887776543 21111 245555555566666666666665
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ-GEGRVALKLFEEMNKNQIK-PD 512 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~ 512 (710)
...++.. ...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l~----------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 101 ENAIQIF----------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHH----------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH----------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 5554421 001111110 12445555555554 6666666666555442100 00
Q ss_pred ----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC---h-----hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 513 ----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ---L-----EHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 513 ----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
..++..+...+...|++++|...|++.... .|+ . ..|..+..++...|++++|+..+++.
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234555555666666666666666665543 222 1 13455555666666666666666655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-09 Score=90.10 Aligned_cols=121 Identities=17% Similarity=0.010 Sum_probs=101.3
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
|...+...|++++|...++.... ..|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999988763 4565 556778999999999999999999987 2334 7889999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHH-HHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVR-TCMR 642 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~m~ 642 (710)
+++.|...++++++++|+++..|..++.+|.+.|++++|.+.+ ++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654 5544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-08 Score=83.19 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFP-QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|..+++.+.+. .| +...+..+...+...|++++|...++++. .+.+...|..+...+...|++
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 3333444444444444444332 12 13334444444444444444444444431 122344455555555555666
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.|...++.+.+..|+++..+..++.+|.+.|++++|.+.++.+..
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666666666666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6.6e-08 Score=94.13 Aligned_cols=163 Identities=10% Similarity=0.045 Sum_probs=93.1
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCC
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSR-------R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKN------QIK 510 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 510 (710)
.++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555555555555554431 1 2345666777777777777777777776653 112
Q ss_pred CC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh------CCCCC-hhHHHHHHHHHHhcC------CHHHHHHHHHhCC
Q 005174 511 PD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIY------GIFPQ-LEHFACMVDLYGRAG------LLNKAKEIITKMP 576 (710)
Q Consensus 511 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~ 576 (710)
|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 32 3466677777888888888888888776531 12333 333444443333322 3444455555543
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 577 -YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 577 -~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
..| ...++..+...+...|+++.|...+++++++
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 3456777888888999999999988888765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=82.99 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=66.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 545 IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PY-TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 545 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
+.|+ ...+......|.+.|++++|++.|++. .. +.+...|..+..++...|+++.|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555 455666666677777777777766665 22 23566666666667777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 005174 622 ANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 622 ~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777666553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=79.96 Aligned_cols=130 Identities=17% Similarity=0.156 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++... .|+ ...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 56677788888888888888888887643 235667777777788888888888888888764 344 6677888888
Q ss_pred HHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 559 YGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+.+.|++++|.+.++++. .+.+...|..+...+...|+++.|...++.+++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888999999988888762 2346777888888888899999999999988888875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-08 Score=108.20 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=138.4
Q ss_pred hccCchHHHHHHHHHHH--------HhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 005174 422 ARVANLQHGKEFHCYIL--------RRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGI 490 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 490 (710)
...|++++|.+.++.++ +. .+.+...+..+...|...|++++|...|+++.+ .+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888887 43 255667788888888888888888888887763 366778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 568 (710)
.|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+. .|+ ...|..+..+|.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 34 45667777778888888888 8888888764 666 67788888888888888888
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhhCCCCCchHHH
Q 005174 569 KEIITKMP-YTPT-SAMWATLLGACQIHRN-----TGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 569 ~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
++.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 88888873 4554 4566666666655554 355566666777777766665443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-05 Score=84.26 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH-HHHHhh
Q 005174 394 ESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA-KSVFDL 472 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~ 472 (710)
.+..+|++++... +.+...|...+..+...|+.+.|+.++...+.. +.+...+.. |+.....++. ..+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 3455666665542 333455555555556666677777777766665 222222222 1111111111 111111
Q ss_pred cC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHhhccCcHHHHHHHHHH
Q 005174 473 MS------------RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMV--AVLSACSHSGLVVEGQKQFER 538 (710)
Q Consensus 473 ~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~ 538 (710)
.. ......|...+..+.+.++.+.|..+|++. ... ..+...|. +.+... ..++.+.|+.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHH
Confidence 10 001245777777777888899999999999 321 22334443 223222 23469999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 539 MTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 539 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
..+.++- +...+...++...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 346 al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9887432 24556778888899999999999999984 3678899988888889999988888887764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-07 Score=87.69 Aligned_cols=239 Identities=8% Similarity=-0.018 Sum_probs=154.4
Q ss_pred HhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 356 SRCKDLRHAYILFKMTAEKSI-ITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
.-.|.+..++.-...+...+. ..---+.++|...|++... ..-.|....+..+...+ ..+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 344666666664444433222 2222344666666665531 11233333333333322 222 45556
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR-----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI 509 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (710)
+..+..+ +++......+..+|...|++++|.+++.+... .+...+..++..|.+.|+.+.|.+.+++|.+ .
T Consensus 90 ~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 90 ENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 6555543 34455556788888889999999999988743 2456777888999999999999999999987 4
Q ss_pred CC-----ChHHHHHHHHHh--hc--cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---
Q 005174 510 KP-----DHVTMVAVLSAC--SH--SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPY--- 577 (710)
Q Consensus 510 ~p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 577 (710)
.| +..+...+..++ .. .+++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 66 355666666552 22 33899999999998754 45533344455588999999999999876521
Q ss_pred ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 578 ---------TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 578 ---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
+.|..+...++......|+ .+.+.++++.+..|+++..
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2355666566666666676 6889999999999998654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.8e-08 Score=86.11 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=88.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...+.+.|++++|+..|++.- .+.+...|..+..+|...|+++.|...++++++++|+++..|..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45666 6678888999999999999999998872 33478889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++.+|...|++++|.+.++...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=92.79 Aligned_cols=174 Identities=9% Similarity=-0.084 Sum_probs=137.2
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 005174 463 VPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTS 541 (710)
Q Consensus 463 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 541 (710)
.+.....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334455555555455667777888889999999999999998874 45 456788888889999999999999998875
Q ss_pred HhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--Cc
Q 005174 542 IYGIFPQLEHF-ACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SG 616 (710)
Q Consensus 542 ~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~ 616 (710)
. .|+.... ......+.+.++.++|++.+++.- .+.+...+..+...+...|+++.|...++.+++.+|++ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 6664333 333344667788888888887762 33467888999999999999999999999999999988 88
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 617 YYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 617 ~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
.+..++.+|...|+.++|...+++-
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 9999999999999999998877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=84.79 Aligned_cols=102 Identities=8% Similarity=-0.068 Sum_probs=90.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...|.+.|++++|++.|++.- .. .+...|..+..++...|+++.|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 56776 6778888999999999999999999873 33 478899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
++.+|.+.|++++|.+.+++.....
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-07 Score=83.94 Aligned_cols=172 Identities=8% Similarity=-0.096 Sum_probs=129.3
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC----cHHHHHHHHHHHH
Q 005174 466 AKSVFDLMS-RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG----LVVEGQKQFERMT 540 (710)
Q Consensus 466 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 540 (710)
|.+.|++.. ..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444433 2367777778888888888888888888888765 45666666666766 6 7888988888886
Q ss_pred HHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 005174 541 SIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMPYTPT----SAMWATLLGACQI----HRNTGIGEWAAEKLL 608 (710)
Q Consensus 541 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 608 (710)
+. -+...+..|..+|.. .+++++|++.|++.....+ ...+..|...|.. .+|.+.|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 246677778888877 7889999999888753333 6778888888877 778999999999998
Q ss_pred hhCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 005174 609 ETRPENSGYYVLIANMYAAT-G-----CWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 609 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 646 (710)
++ |.++..+..|+.+|... | ++++|.+.+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778888999998754 3 88999998888766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=103.52 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=95.5
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhh
Q 005174 387 THLDCAEESAFLFREMF--------RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYA 458 (710)
Q Consensus 387 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 458 (710)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 45556666666666555 211 2233444455555556666666666666666553 445555566666666
Q ss_pred hcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
..|++++|...|++..+ | +...|..+..+|.+.|++++ +..|++..+. .| +...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666655442 2 44555566666666666666 6666665553 23 23455555555666666666666
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 005174 535 QFERMTSIYGIFPQ-LEHFACMVDLYGRAGL--------LNKAKEIITKM 575 (710)
Q Consensus 535 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 575 (710)
.|+++.+ +.|+ ...+..+..+|...|+ +++|.+.+..+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 6665542 3555 4455555555544332 44455555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=101.54 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=125.2
Q ss_pred cCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHH
Q 005174 460 SGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
.|++++|...|++..+. +...|..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988743 5778999999999999999999999999985 44 467888899999999999999999
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHh
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIH---RNTGIGEWAAEKLLE 609 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 609 (710)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.- . +.+...+..+...+... |+.+.|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999875 566 7889999999999999999999999872 2 34678888999999999 999999999999999
Q ss_pred hCCCCCchHHHHH
Q 005174 610 TRPENSGYYVLIA 622 (710)
Q Consensus 610 ~~p~~~~~~~~l~ 622 (710)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-07 Score=78.21 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=94.5
Q ss_pred CCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHH
Q 005174 509 IKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMW 584 (710)
Q Consensus 509 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~ 584 (710)
+.|+ ...+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|++.+++.- . +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4554 345667778888899999999999988764 665 7888889999999999999999988762 2 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
..+..++...|+++.|...++++++++|+++..+..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999988888777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-07 Score=85.51 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLY 559 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 559 (710)
+.+...|...|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+. .|+ ...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 33888889999999999999998874 44 4667888888899999999999999998864 677 77888888888
Q ss_pred HhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 560 GRAGL--LNKAKEIITKMPYTPTS--AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 560 ~~~g~--~~~A~~~~~~m~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...|. .+++...++... .|+. ..|..+..++...|+++.|...+++++++.|+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 76654 345566666654 3333 344455566777889999999999999999963
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-07 Score=87.99 Aligned_cols=131 Identities=6% Similarity=-0.057 Sum_probs=111.9
Q ss_pred CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 005174 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLL 588 (710)
Q Consensus 511 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~ 588 (710)
.+...+..+...+...|++++|...|+++... .|+ ...+..+..+|.+.|++++|...+++.. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34556777778889999999999999999875 776 7889999999999999999999999985 456665444433
Q ss_pred H-HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 589 G-ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 589 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
. .+...++.+.|...++++++.+|+++..+..++.+|...|++++|.+.+......
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3 3667788888999999999999999999999999999999999999999988763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-07 Score=91.04 Aligned_cols=221 Identities=9% Similarity=-0.023 Sum_probs=148.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHH
Q 005174 388 HLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAK 467 (710)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 467 (710)
..|++++|.+++++..+... .. .+...++++.|...+.. ....|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHHH
Confidence 35677888888887765321 10 01113556666655443 344566778888888
Q ss_pred HHHhhcCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHhhccCcHHHHH
Q 005174 468 SVFDLMSRR-----D----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQ---IKPD--HVTMVAVLSACSHSGLVVEGQ 533 (710)
Q Consensus 468 ~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 533 (710)
..|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 777765421 1 3477888888999999999999998876521 1122 3467777788888 9999999
Q ss_pred HHHHHHHHHhCCC--C-C-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHH
Q 005174 534 KQFERMTSIYGIF--P-Q-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGE 601 (710)
Q Consensus 534 ~~~~~~~~~~~~~--p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~ 601 (710)
..|++....+.-. + . ..++..+..+|.+.|++++|++.|++.- ..++ ...+..+...+...|+++.|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887643111 1 1 4678889999999999999999998762 1122 225566666777789999999
Q ss_pred HHHHHHHhhCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 005174 602 WAAEKLLETRPENSGY-----YVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 602 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 637 (710)
..+++++ +.|+.... ...++..+ ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99876443 33445545 56776655553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=83.85 Aligned_cols=75 Identities=8% Similarity=-0.064 Sum_probs=54.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 568 AKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN--SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
|+..+++. ...| +...+..+..++...|+++.|...++.+++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444443 1233 56777777778888888888888888888888764 4578888888888888888888776543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-07 Score=98.58 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=97.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHH
Q 005174 424 VANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 500 (710)
.|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+...|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467778888888877764 556777888888888888888888888876542 566778888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 005174 501 FEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA---GLLNKAKEIITKM 575 (710)
Q Consensus 501 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---g~~~~A~~~~~~m 575 (710)
|++..+.. +-+...+..+..++...|++++|.+.+++..+. .|+ ...+..+..+|... |+.++|.+.+++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88877742 224567777777888888888888888887764 555 66777888888888 8888888888766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-05 Score=82.07 Aligned_cols=80 Identities=8% Similarity=-0.111 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHcccCC-chHHHHHHHHHH--hcC-CChHHHHHHHHHHHHh----cCCH
Q 005174 154 GFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMD-VDFGRVVHSCID--ACH-EWSLFVHNALVSMYGK----FGQV 225 (710)
Q Consensus 154 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~--~g~-~~~~~~~~~li~~~~~----~g~~ 225 (710)
|+++.+..+|++.... .|+...|..-++-..+.++ .+....+|+... .|. +.+...|...+..+.. .|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5555666666655542 3455555444444433332 233445555444 232 2244555555554432 2445
Q ss_pred HHHHHHHhhc
Q 005174 226 DVARRLFDKM 235 (710)
Q Consensus 226 ~~A~~~~~~~ 235 (710)
+.+..+|++.
T Consensus 106 ~~vR~iy~rA 115 (493)
T 2uy1_A 106 EKIRNGYMRA 115 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566666655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=79.21 Aligned_cols=101 Identities=14% Similarity=-0.033 Sum_probs=86.5
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHH
Q 005174 544 GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVL 620 (710)
Q Consensus 544 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 620 (710)
.+.|+ ...+..+...+.+.|++++|+..|++.- .+.+...|..+..++...|+++.|...++++++++|+++..|..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34565 5667778888889999999999998762 23477888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 005174 621 IANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++.+|...|++++|.+.++.....
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-05 Score=78.12 Aligned_cols=225 Identities=9% Similarity=0.027 Sum_probs=140.8
Q ss_pred ChHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCCchHHHhHHhhhh----hhc---
Q 005174 391 CAEESAFLFREMFRSGVEPNYV-TIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMY----ARS--- 460 (710)
Q Consensus 391 ~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 460 (710)
..++|+.++..++.. .|+.. .++.--..+...+ .++++..++..++... +.+..+|+.-...+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcccc
Confidence 345666666666654 33332 2333333444455 6666666666666654 44445555444333 333
Q ss_pred CChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc------H
Q 005174 461 GKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGR--VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL------V 529 (710)
Q Consensus 461 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 529 (710)
++++++..+++.+.+ +|..+|+--.-.+.+.|+++ ++++.++++.+...+ |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 677777777777653 35667777666777777777 888888888875433 45566555545555554 7
Q ss_pred HHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 530 VEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNK-AKEIITKMP-Y----TPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 530 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
+++.+.++.+... .|+ ...|+-+..++.+.|+..+ +..+.++.- . ..+...+..+..++...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7777777777754 565 6677777777777776444 445666542 1 2366777777777777788888888
Q ss_pred HHHHHHh-hCCCCCchHHHHHH
Q 005174 603 AAEKLLE-TRPENSGYYVLIAN 623 (710)
Q Consensus 603 ~~~~~~~-~~p~~~~~~~~l~~ 623 (710)
+++.+.+ .+|.....|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 8888775 67777666655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5e-07 Score=84.67 Aligned_cols=187 Identities=13% Similarity=0.038 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCC-chHHHhHHhhhhhhcCChhHHHHHHhhcCC--CC-h---hHHHH
Q 005174 411 YVTIASILPLCARVANLQHGKEFHCYILRRAMFNE-HLLLWNSLVEMYARSGKVPEAKSVFDLMSR--RD-E---VTYTS 483 (710)
Q Consensus 411 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~ 483 (710)
...+......+...|++++|...+..+++..+..+ ....+..+..+|.+.|++++|...|+++.+ |+ . ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566778899999999999999998752222 246788889999999999999999998763 32 2 14555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCcHHHHHHHHHHHHHHhC
Q 005174 484 LIAGYGI------------------QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGLVVEGQKQFERMTSIYG 544 (710)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 544 (710)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999974 46543 2221110 001111111
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 545 IFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 545 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
.....+...|.+.|++++|+..|+++- ..|+ ...+..+..++...|+.+.|...++.+....|++.+++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 122456788999999999999998872 2233 25678888999999999999999999999999876653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-06 Score=84.06 Aligned_cols=163 Identities=8% Similarity=-0.064 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHhhccCcHHHHHHHHHHHHHHhC--CCCC--hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-H----VTMVAVLSACSHSGLVVEGQKQFERMTSIYG--IFPQ--LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 550 (710)
.+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888888776432211 1 1233344556777889999998888765311 1112 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP----YTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE------NS 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 615 (710)
.++.+...|...|++++|+..+++.- ..|+ ..++..+...|...|+++.|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999888887652 1122 257788888899999999999999998877532 15
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKL-AKVRTCMR 642 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 642 (710)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=80.69 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=114.4
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-hhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA-CSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 525 (710)
...+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|++.... .|+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 45566677888999999999998874 26678888889999999999999999887763 3443332221111 112
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT---SAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~g~~~~a 600 (710)
.+...+|...+++..+. .|+ ...+..+..+|...|++++|+..++++ ...|+ ...+..+...+...|+.+.|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233467888887764 676 788889999999999999999999876 33443 56888888999999999999
Q ss_pred HHHHHHHHh
Q 005174 601 EWAAEKLLE 609 (710)
Q Consensus 601 ~~~~~~~~~ 609 (710)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=81.58 Aligned_cols=128 Identities=10% Similarity=-0.038 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++.... .|+ ...+..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556667777788888888888766 3556777777777777888888888888877764 444 666777777
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTP-T----------------SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p-~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
+|.+.|++++|++.+++.- ..| + ...|..+..++...|+++.|...++.++++.|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776651 111 1 256666666777777777777777777777663
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-06 Score=78.71 Aligned_cols=212 Identities=8% Similarity=0.038 Sum_probs=167.7
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC--ChhHHHHHHhhcCC---CChhHHHHHHHHH----Hhc---CC
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG--KVPEAKSVFDLMSR---RDEVTYTSLIAGY----GIQ---GE 493 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~ 493 (710)
..++|..+...++..+ +.+..+|+.--..+...| +++++.+.++.+.. .+...|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3467888888888875 667788888888888888 99999999998874 3566777765555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHH--HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC------
Q 005174 494 GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVV--EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL------ 564 (710)
Q Consensus 494 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------ 564 (710)
+++++.+++++.+.. +-|...|..-.-.+.+.|.++ ++.++++++.+. .|. ...|+.-..++.+.|.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 999999999999853 226667777766677778887 999999999875 555 6677777777777776
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCCchHHHHHH
Q 005174 565 LNKAKEIITKMP--YTPTSAMWATLLGACQIHRNT-GIGEWAAEKLLETR---PENSGYYVLIANMYAATGCWDKLAKVR 638 (710)
Q Consensus 565 ~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~ 638 (710)
++++++.++++- .+-|...|+-+...+...|+. +.....++.+.+++ |.++..+..++++|.+.|+.++|.+++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 899999988762 344899999998888887774 33556777777776 788889999999999999999999999
Q ss_pred HHHHh
Q 005174 639 TCMRD 643 (710)
Q Consensus 639 ~~m~~ 643 (710)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-06 Score=83.14 Aligned_cols=160 Identities=8% Similarity=-0.042 Sum_probs=119.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHH
Q 005174 483 SLIAGYGIQGEGRVALKLFEEMNKNQ-IKPDHV----TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFA 553 (710)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 553 (710)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888899999999999988732 222321 2334566667778999999999998863211222 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchH
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMP-------Y-TPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYY 618 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 618 (710)
.+...|...|++++|+..++++- . .+. ..++..+...|...|+++.|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999988887762 1 111 2377888899999999999999999998875433 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHH
Q 005174 619 VLIANMYAATGC-WDKLAKVRTCMR 642 (710)
Q Consensus 619 ~~l~~~~~~~g~-~~~A~~~~~~m~ 642 (710)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 599999887664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-06 Score=79.15 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=78.8
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 525 (710)
.+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34466667777777777777776542 25667777777777777777777777777763 343 4556666655544
Q ss_pred cCc--HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005174 526 SGL--VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTSAMWATLLG 589 (710)
Q Consensus 526 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~ 589 (710)
.|. .+.+...++... ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 433 333444444432 11222223344555666677777777777765 45676655555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.1e-07 Score=79.56 Aligned_cols=118 Identities=11% Similarity=0.050 Sum_probs=79.9
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCh--
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGA-CQIHRNT-- 597 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~-~~~~g~~-- 597 (710)
...|++++|...++..... .|+ ...+..+..+|...|++++|+..+++.- .+.+...|..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456666777777666654 344 5667777777777777777777776652 12355666666666 6677776
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+.|...++.+++.+|+++..+..++.+|...|++++|.+.++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77888888888888888788888888888888888888877776653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.9e-07 Score=74.40 Aligned_cols=119 Identities=14% Similarity=-0.002 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|+..|++.- .+.+...|..+..++...|+++.|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456777788888888888888888762 23467888888888999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHH
Q 005174 627 ATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTEL 687 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~ 687 (710)
..|++++|.+.+++...... . ....|....+...+..+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p----~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDA----E----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHH----H----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCc----c----------------cCCchhHHHHHHHHHHHHHh
Confidence 99999999999888765321 0 01336677777777665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=72.29 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|..+++++... .|+ ...+..+...+.+.|++++|...++++. .+.+..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 345666666777777777777777777654 343 6667777778888888888887777762 2346677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
.+...|+++.|...++.++++.|+++..+..++.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888899999999999999999988888888888877654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-06 Score=78.72 Aligned_cols=131 Identities=12% Similarity=-0.036 Sum_probs=96.4
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 528 (710)
.+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355666777788888888888888877777888888888888888888888888877642 2345677777778888888
Q ss_pred HHHHHHHHHHHHHHhC-------------CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005174 529 VVEGQKQFERMTSIYG-------------IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT 580 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~-------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 580 (710)
+++|...|++..+... ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888776311 1122 367777888888888888888888776 34444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=75.89 Aligned_cols=125 Identities=7% Similarity=-0.035 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~ 591 (710)
.+..+...+...|++++|...|++.... .|+ ...+..+..+|...|++++|.+.+++.- .+.+...|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666777777777777777654 443 6667777777788888888887777652 233567788888888
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIAN--MYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~ 642 (710)
...|+++.|...+++++++.|++...+..+.. .+.+.|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999999999999988877754444 4788899999999887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-06 Score=75.47 Aligned_cols=158 Identities=8% Similarity=-0.044 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA----NLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
+..++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.+ +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 45556666666666677777777777766654 33444444444554 4 6666676666665554 44555
Q ss_pred hHHhhhhhh----cCChhHHHHHHhhcCCCC-----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHH
Q 005174 451 NSLVEMYAR----SGKVPEAKSVFDLMSRRD-----EVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMV 517 (710)
Q Consensus 451 ~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 517 (710)
..|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+.+|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 666666665 667777777777766543 4667777777776 66777777777777765 22333455
Q ss_pred HHHHHhhcc-C-----cHHHHHHHHHHHHHH
Q 005174 518 AVLSACSHS-G-----LVVEGQKQFERMTSI 542 (710)
Q Consensus 518 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~ 542 (710)
.|...|... | +.++|..+|+...+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 555555432 2 677777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-06 Score=72.33 Aligned_cols=117 Identities=11% Similarity=-0.035 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...+++.... .|+ ...+..+...|...|++++|.+.+++.. .+.+...|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345556666677777777777777777654 343 6677777778888888888887777652 2335677888888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
.+...|+++.|...++.++++.|+++..+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888999999999999999999998888999999998888753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-06 Score=72.74 Aligned_cols=115 Identities=9% Similarity=-0.041 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...+++... ..|+ ...+..+..+|...|++++|++.+++.. .+.+...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34555555566666666666666666553 2443 5566666666666777777766666552 2235667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
++...|+++.|...++++++++|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=87.14 Aligned_cols=158 Identities=14% Similarity=0.000 Sum_probs=108.9
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFE 537 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (710)
+++++|...|+...+ + +...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH--
Confidence 344444444443321 1 3446666666777777777777777776653 2322100 00111110
Q ss_pred HHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 538 RMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 538 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|. ...|..+..+|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|++
T Consensus 192 --------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 192 --------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 111 3567888888888999999988888772 23467888889999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHH
Q 005174 615 SGYYVLIANMYAATGCWDKL-AKVRTCM 641 (710)
Q Consensus 615 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m 641 (710)
+..+..++.++.+.|++++| .+.++.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 4455555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-07 Score=88.10 Aligned_cols=190 Identities=12% Similarity=-0.024 Sum_probs=121.4
Q ss_pred chHHHhHHhhhhhhcCChhHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 005174 446 HLLLWNSLVEMYARSGKVPEAKSVFDLMS--RR-DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLS 521 (710)
Q Consensus 446 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 521 (710)
+...+..+...|.+.|++++|...|++.. .| +...|..+..+|...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34456666677777777777777777654 22 5667777788888888888888888887764 34 3556777777
Q ss_pred HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005174 522 ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIG 600 (710)
Q Consensus 522 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a 600 (710)
++...|++++|...|++..+. .|+ ...+...+....+.++...... .......++......+ ..+ ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 788888888888888877654 332 1111112222222221112111 2222333344443333 222 26888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 005174 601 EWAAEKLLETRPENSGYYVLIANMYAAT-GCWDKLAKVRTCMRD 643 (710)
Q Consensus 601 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 643 (710)
.+.++.+++++|++......+..++.+. +++++|.+++....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888999998877777777777777 678999999887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=86.14 Aligned_cols=197 Identities=8% Similarity=-0.061 Sum_probs=151.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 005174 423 RVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFE 502 (710)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (710)
..|++++|.+++.+..+.. +.. .+...+++++|...|.. ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 3577888999988887754 211 12125889999888776 4677889999999999999
Q ss_pred HHHHC----CCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005174 503 EMNKN----QIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI--FPQ--LEHFACMVDLYGRAGLLNKAKEIIT 573 (710)
Q Consensus 503 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 573 (710)
+..+. |-.+. ..+|..+...|...|++++|...|++....+.- .|. ..++..+..+|.+ |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 87753 11111 347888888899999999999999988765311 122 4678889999988 99999999998
Q ss_pred hCC----C--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 005174 574 KMP----Y--TP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS------GYYVLIANMYAATGCWDKLAKVRT 639 (710)
Q Consensus 574 ~m~----~--~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 639 (710)
+.- . .+ ...++..+...+...|+++.|...+++++++.|++. ..+..++.++...|++++|.+.++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 762 1 11 145788888999999999999999999999877553 367778888999999999999998
Q ss_pred HHH
Q 005174 640 CMR 642 (710)
Q Consensus 640 ~m~ 642 (710)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3e-05 Score=75.82 Aligned_cols=159 Identities=9% Similarity=-0.079 Sum_probs=119.4
Q ss_pred HHhhhhhhcCChhHHHHHHhhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHH
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMSRR---DE------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMV 517 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 517 (710)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788899999999999886542 11 13334667777788999999999999884322 23 22688
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHh----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHH
Q 005174 518 AVLSACSHSGLVVEGQKQFERMTSIY----GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-------YTPT-SAMW 584 (710)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~-~~~~ 584 (710)
.+...|...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|++.+++.- ..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999987532 12222 4478899999999999999999988761 1222 5678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhh
Q 005174 585 ATLLGACQIHRN-TGIGEWAAEKLLET 610 (710)
Q Consensus 585 ~~l~~~~~~~g~-~~~a~~~~~~~~~~ 610 (710)
..+..++...|+ ++.|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999994 69999988888765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=79.79 Aligned_cols=136 Identities=14% Similarity=-0.021 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 005174 482 TSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLY 559 (710)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 559 (710)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... -.|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 44566777888888888888887764 355444444555677888888888888755431 1121 23577788888
Q ss_pred HhcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 560 GRAGLLNKAKEIITKMPYT---PT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+.|++++|+..|++.... |. ...+..+..++...|+.++|...++++.+.+|+ +..+..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8899999999888877311 42 336667777888889999999999999999887 55555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-06 Score=80.98 Aligned_cols=163 Identities=9% Similarity=-0.058 Sum_probs=117.2
Q ss_pred HHHhHHhhhhhhcCChhHHHHHHhhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--h
Q 005174 448 LLWNSLVEMYARSGKVPEAKSVFDLMSRR---DE------VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIK---PD--H 513 (710)
Q Consensus 448 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~ 513 (710)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..|++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888898888888754321 11 23444566677888999999999988763211 11 3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-C
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACMVDLYGRAGLLNKAKEIITKMP-------YTP-T 580 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~ 580 (710)
.+++.+...|...|++++|..+++++.+.....|+ ..++..+...|.+.|++++|++.+++.- ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988743222333 2578889999999999999999988752 111 1
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHhh
Q 005174 581 SAMWATLLGACQIHRNTGIG-EWAAEKLLET 610 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 610 (710)
..+|..+...+...|+.+.| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56778888889999999999 7777777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=69.89 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--CCchHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE--NSGYYVLIANM 624 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 624 (710)
...+..+...+.+.|++++|...+++.- .+.+...|..+...+...|+++.|...+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5567777888888888888888887762 2346777888888888899999999999999999998 88899999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCC
Q 005174 625 YAAT-GCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 625 ~~~~-g~~~~A~~~~~~m~~~~~ 646 (710)
|... |++++|.+.++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999888776443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.5e-06 Score=73.55 Aligned_cols=102 Identities=18% Similarity=0.047 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGA 590 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~ 590 (710)
..+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.- ..| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555555555555555555555543 343 4455555555555555555555555441 112 34455555555
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
+...|+++.|...++++++++|+++..|
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 5555555555555555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=7.4e-06 Score=67.01 Aligned_cols=93 Identities=8% Similarity=-0.026 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAA 627 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 627 (710)
..+..+...+...|++++|...+++.- .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555555566666666666665541 122455555566666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHH
Q 005174 628 TGCWDKLAKVRTCMR 642 (710)
Q Consensus 628 ~g~~~~A~~~~~~m~ 642 (710)
.|++++|.+.++...
T Consensus 85 ~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 85 LNRFEEAKRTYEEGL 99 (118)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 666666666665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=75.77 Aligned_cols=62 Identities=15% Similarity=-0.027 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLET-------RPENSGYY----VLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..|..+..++...|++++|...+++++++ +|+++..| ..++.+|...|++++|++.+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888899999999999999998 99999999 9999999999999999999988765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-06 Score=69.51 Aligned_cols=97 Identities=5% Similarity=-0.085 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 548 QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 548 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+...+..+...+...|++++|+..|++.- .+.+...|..+...+...|+++.|...++.+++++|+++..|..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 36677788888888888888888887762 2335778888888888999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 005174 626 AATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 626 ~~~g~~~~A~~~~~~m~~~ 644 (710)
...|++++|.+.++.....
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999998887653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=71.44 Aligned_cols=94 Identities=10% Similarity=-0.076 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (710)
.+..+...+.+.|++++|+..+++.- ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45567788888999999999888872 234 7788888888999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 005174 629 GCWDKLAKVRTCMRDL 644 (710)
Q Consensus 629 g~~~~A~~~~~~m~~~ 644 (710)
|++++|.+.+++....
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.9e-06 Score=69.05 Aligned_cols=95 Identities=13% Similarity=0.010 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 677889999999999999999999987 3334 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
+.|++++|.+.+++...
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-06 Score=73.34 Aligned_cols=85 Identities=12% Similarity=-0.002 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCe
Q 005174 581 SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNV 660 (710)
Q Consensus 581 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 660 (710)
...|..+..++...|+++.|...++.+++++|+++..|..++.+|...|++++|.+.++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 457788888899999999999999999999999999999999999999999999999888764
Q ss_pred EEEEeeCCCCCcchh-hHHHHHHHHHHHHHHc
Q 005174 661 FSPFLVDDTSNVQAQ-EIYPLLGGLTELMKDA 691 (710)
Q Consensus 661 ~~~~~~~~~~~p~~~-~~~~~l~~l~~~~~~~ 691 (710)
.+|+.. .+...|..+...+++.
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 356665 6777787777777643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=74.35 Aligned_cols=104 Identities=8% Similarity=-0.066 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHH
Q 005174 513 HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-PTSAMWATLLG 589 (710)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~l~~ 589 (710)
...+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|++.|++.- .. .+...|..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 335556666777888888888888887764 564 6777788888888888888888887762 22 35677778888
Q ss_pred HHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 590 ACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 590 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
++...|+++.|...+++++++.|+++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 888889999999999999998888776643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-05 Score=66.90 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|.+.++++. .+.+..+|..+...+...|+++.|...++.+.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999873 33467888999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999998875
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=73.60 Aligned_cols=128 Identities=10% Similarity=-0.024 Sum_probs=61.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCC-C----H
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP----YTP-T----S 581 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p-~----~ 581 (710)
.+..+...+...|++++|...+++..... +..|. ...+..+...|...|++++|.+.+++.- ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444444444444444443311 11111 2334445555555555555555444331 011 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC--C----CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPE--N----SGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+..+...+...|+++.|...+++.+++.+. + ...+..++.++...|++++|.+.+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23444555555566666666666555544211 1 2234667777777777777777666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00038 Score=68.27 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=126.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhc-C
Q 005174 385 GYTHLDCAEESAFLFREMFRSGVEPNY-VTIASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARS-G 461 (710)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 461 (710)
...+.+..++|++++.+++.. .|+. ..++.--..+...+ .++++..++..++... +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcC
Confidence 334445556777777777765 3433 33344334444455 4777777777777664 56666676666666665 5
Q ss_pred -ChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc-
Q 005174 462 -KVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGR--------VALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL- 528 (710)
Q Consensus 462 -~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 528 (710)
+++++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 777888888777754 4456655554554444444 777777777775322 55566655555555554
Q ss_pred ------HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCH--------------------HHHHHHHHhCC-C---
Q 005174 529 ------VVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLL--------------------NKAKEIITKMP-Y--- 577 (710)
Q Consensus 529 ------~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~-~--- 577 (710)
++++.+.++++... .|+ ...|+-+-..+.+.|+. .+..++..++. .
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 56667777666653 555 55566655566555543 22233333331 1
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hhCCCCCchHH
Q 005174 578 ----TPTSAMWATLLGACQIHRNTGIGEWAAEKLL-ETRPENSGYYV 619 (710)
Q Consensus 578 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 619 (710)
.+....+..|+..|...|+.++|.++++.+. +.+|-....|.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2344555555555555555555555555554 44554433333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-06 Score=74.38 Aligned_cols=126 Identities=9% Similarity=0.055 Sum_probs=92.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH-HHhcCCH-
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL-YGRAGLL- 565 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~- 565 (710)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++... .|+ ...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 44577778888888777642 235567777777888888888888888888764 444 6677777777 7788887
Q ss_pred -HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 566 -NKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 566 -~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
++|...+++.- ..| +...|..+...+...|+++.|...++.++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888762 233 567788888888899999999999999999999876544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.6e-06 Score=79.01 Aligned_cols=180 Identities=8% Similarity=-0.062 Sum_probs=127.9
Q ss_pred cCChhHHHHHHhhcCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------
Q 005174 460 SGKVPEAKSVFDLMSR--R-DEVTYTSL-------IAGYGIQGEGRVALKLFEEMNKNQIKPDH---------------- 513 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------- 513 (710)
.++...|.+.|.++.+ | ....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccccc
Confidence 4556666666665542 2 33455555 3444444555555555554443 23321
Q ss_pred ------HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 005174 514 ------VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTS----AM 583 (710)
Q Consensus 514 ------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~ 583 (710)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 1223355667889999999999998864 3576337777788999999999999999977544433 36
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETR--PE-NSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+..+..++...|++++|...+++...-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 7778889999999999999999998543 44 4557889999999999999999999999863
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=64.95 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGA 590 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~ 590 (710)
..+..+...+...|++++|...++..... .|+ ...+..+..+|.+.|++++|...+++.- .+.+...|..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666677777766666653 343 5566666777777777777777766651 22356667777777
Q ss_pred HHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 591 CQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+...|+++.|...++.+++++|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 77788888888888888888887777666665553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=8.1e-06 Score=70.34 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=56.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+..+...+.+.|++++|...|+++... .|+ ...|..+..+|.+.|++++|++.|++.- ..| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3444445555566666666666665543 444 5555566666666666666666665551 222 445566666666
Q ss_pred HhcCChHHHHHHHHHHHhhCCCC
Q 005174 592 QIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
...|+++.|...+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 66666666666666666666653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=66.81 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+...|++++|.+.+++.- .+.+...|..+...+...|+++.|...++.+++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5678888999999999999999999872 33467888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 005174 627 ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 627 ~~g~~~~A~~~~~~m~~ 643 (710)
..|++++|.+.++....
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=68.27 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|+++.|...++.++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334444444455555555555555443 22333 3444444455555555555555555555555555555555555
Q ss_pred HHHhcCCchHHHHHHHHHH
Q 005174 624 MYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 624 ~~~~~g~~~~A~~~~~~m~ 642 (710)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=73.86 Aligned_cols=152 Identities=11% Similarity=-0.006 Sum_probs=94.0
Q ss_pred hcCChhHHHH---HHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-ChHHHHHHHHHhhccCcHH
Q 005174 459 RSGKVPEAKS---VFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNK----NQIKP-DHVTMVAVLSACSHSGLVV 530 (710)
Q Consensus 459 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 530 (710)
..|++++|.+ .+..-.......+..+...|...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223455667777777777777777777777655 11122 2335666666777788888
Q ss_pred HHHHHHHHHHHHhCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 005174 531 EGQKQFERMTSIYGIFP-Q----LEHFACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNT 597 (710)
Q Consensus 531 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~ 597 (710)
+|...+++......-.+ + ...+..+...+...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888777665421122 1 3456777778888888888877776651 1112 22346666777888888
Q ss_pred HHHHHHHHHHHhh
Q 005174 598 GIGEWAAEKLLET 610 (710)
Q Consensus 598 ~~a~~~~~~~~~~ 610 (710)
+.|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=70.22 Aligned_cols=94 Identities=17% Similarity=0.053 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 477 DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
+...|..+...+...|++++|+..|++..+. .| +...|..+..++...|++++|...|++..+. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3456667777777777777777777777764 33 4556667777777777777777777777654 555 667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+..+|.+.|++++|++.|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7.3e-06 Score=70.13 Aligned_cols=106 Identities=11% Similarity=-0.053 Sum_probs=73.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~ 591 (710)
.+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|+..|++.- . +.+...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4444555666777777777777777653 554 6667777777777777777777777652 2 23556677777778
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLIAN 623 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 623 (710)
...|+++.|...++.++++.|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 88888888888888888888877766554433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=66.58 Aligned_cols=108 Identities=7% Similarity=-0.093 Sum_probs=66.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.- ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555556666666666666666543 343 5566666666666666666666666551 222 456666666777
Q ss_pred HhcCChHHHHHHHHHHHhhC------CCCCchHHHHHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETR------PENSGYYVLIANMY 625 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 625 (710)
...|+++.|...++++++++ |++...+..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77777777777777777777 66655555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.3e-06 Score=87.14 Aligned_cols=117 Identities=7% Similarity=-0.028 Sum_probs=95.6
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~ 597 (710)
..+...|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778889999888888764 666 778888999999999999999988877 2334 677888999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 005174 598 GIGEWAAEKLLETRPENSGYYVLIANM--YAATGCWDKLAKVRTC 640 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 640 (710)
++|...++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999988 8899999999998663
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=77.37 Aligned_cols=148 Identities=8% Similarity=-0.087 Sum_probs=70.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--------------hhHH
Q 005174 487 GYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--------------LEHF 552 (710)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--------------~~~~ 552 (710)
.....|+++++.+.|+.-.+. .......+..+...+...|++++|...|++......-.|+ ...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334445555555444422211 0012234445555566666666666666666543111111 1455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..+..+|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|+++..+..++.++...|+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 555555666666666665555541 122445555555555556666666666666666666655555555555555555
Q ss_pred chHHH
Q 005174 631 WDKLA 635 (710)
Q Consensus 631 ~~~A~ 635 (710)
.+++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 44444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=73.54 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=101.2
Q ss_pred hhhhhhcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------H
Q 005174 454 VEMYARSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----------------V 514 (710)
Q Consensus 454 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 514 (710)
+......|+++++.+.|+.-... ....+..+...+...|++++|+..|++..+.... +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHH
Confidence 33444556666666666543322 4557888889999999999999999999884221 22 6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGAC 591 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~ 591 (710)
.+..+..++...|++++|...++..... .|+ ...+..+..+|...|++++|++.|++.- ..| +...+..+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 7788888899999999999999999875 565 7889999999999999999999998872 334 566777777666
Q ss_pred HhcCChHHHH
Q 005174 592 QIHRNTGIGE 601 (710)
Q Consensus 592 ~~~g~~~~a~ 601 (710)
...++.+.+.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6666554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=4e-05 Score=67.23 Aligned_cols=128 Identities=7% Similarity=-0.068 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.... .|+ ...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 356667777778888888888888877642 224666777777778888888888888887764 454 667778888
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHhh
Q 005174 558 LYGRAGLLNKAKEIITKMP-YTP-TSAMWATL--LGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
+|.+.|++++|.+.+++.. ..| +...+..+ +..+...|+++.|...++...++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888888887762 222 44444333 33366677777777777665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-05 Score=66.62 Aligned_cols=109 Identities=7% Similarity=-0.079 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLL 588 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~ 588 (710)
.+..+...+...|++++|...|++..+ +.|+ ...+..+..+|...|++++|++.+++.- . +.+...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444444444555555555554442 2333 3445555555666666666666555441 1 22455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
.++...|+++.|...++++++++|++...+..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777666665555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.6e-06 Score=67.74 Aligned_cols=94 Identities=10% Similarity=-0.063 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG-------YYVL 620 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 620 (710)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|+++.|...++++++++|++.. .|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34667788888888888888888776 2233 6778888888889999999999999999998887653 6777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+|...|++++|++.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00048 Score=67.21 Aligned_cols=192 Identities=9% Similarity=0.022 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCC--hhHHHHHHhhcCC---CChhHHHHHHHHHHhcCC-hHHHHHH
Q 005174 427 LQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGK--VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGE-GRVALKL 500 (710)
Q Consensus 427 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~ 500 (710)
++++..++..++... +.+..+|+.-.-.+.+.|+ ++++..+++.+.+ +|-.+|+--...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456667777777664 5666677766666666663 6777777777663 366677776666677777 4788888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhcc--------------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc---
Q 005174 501 FEEMNKNQIKPDHVTMVAVLSACSHS--------------GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA--- 562 (710)
Q Consensus 501 ~~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--- 562 (710)
+.++.+..+. |...|+.....+.+. +.++++.+.+...... .|+ ...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCc
Confidence 8888775432 455555444333332 4467777777777653 565 55665555555554
Q ss_pred --------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 563 --------GLLNKAKEIITKM-PYTPTSAMWATLLGAC-----QIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 563 --------g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
+.++++++.++++ ...||. .|..+..+. ...|..+.....+.++.+++|...+.|..+..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466777777666 234543 343222221 2345666677777788888887766666555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00021 Score=70.12 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=153.4
Q ss_pred chHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC-ChhHHHHHHhhcCCC---ChhHHHHHHHHHHhc-C-ChHHHHH
Q 005174 426 NLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG-KVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQ-G-EGRVALK 499 (710)
Q Consensus 426 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~-g-~~~~A~~ 499 (710)
..++|.++...++... +.+..+|+.--..+...| .++++..+++.+... +..+|+.-...+... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3457888888888875 667778888877888888 599999999988743 667888877777776 7 8999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhccCcHH--------HHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC------
Q 005174 500 LFEEMNKNQIKPDHVTMVAVLSACSHSGLVV--------EGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL------ 564 (710)
Q Consensus 500 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------ 564 (710)
+++++.+...+ |...|+.-.-.+.+.|.++ ++.+.++++.+. .|+ ...|+....++.+.+.
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 99999975322 5666665554455545555 889999999875 565 7778888888888876
Q ss_pred -HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH-----------------HHHHHHHHHhhC---------CCCC
Q 005174 565 -LNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGI-----------------GEWAAEKLLETR---------PENS 615 (710)
Q Consensus 565 -~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~-----------------a~~~~~~~~~~~---------p~~~ 615 (710)
++++++.++++- .+-|...|+-+-..+...|+... -..+.+.+.++. +..+
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 788998887762 33488899888777777665410 112233333331 3445
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
-....|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 5678999999999999999999998863
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-05 Score=66.08 Aligned_cols=99 Identities=7% Similarity=-0.142 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHH
Q 005174 512 DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLL 588 (710)
Q Consensus 512 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~ 588 (710)
+...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|+..+++.- .+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3455566666666666666666666666553 344 5566666667777777777776666552 223456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.++...|+++.|...++.++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7777777777777777777777666
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=67.32 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 005174 554 CMVDLYGRAGLLNKAKEIITKMP-YTPT-S---AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---SGYYVLIANMY 625 (710)
Q Consensus 554 ~li~~~~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 625 (710)
.+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|+++.|...++.+++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455556666666666665541 1122 2 355556666666777777777777777777766 55567777777
Q ss_pred HhcCCchHHHHHHHHHHh
Q 005174 626 AATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 626 ~~~g~~~~A~~~~~~m~~ 643 (710)
...|++++|.+.++....
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-05 Score=65.03 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHH
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGYYVL 620 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 620 (710)
..+..+...+...|++++|...+++.- .+.+...|..+...+...|+++.|...++.++++.|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456677777888888888888887662 23466777788888888889998999999888887766 778899
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 005174 621 IANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 621 l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
++.+|...|++++|.+.++....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=78.96 Aligned_cols=96 Identities=13% Similarity=-0.059 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT----------------SAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
...+..+...|.+.|++++|+..|++.- ..|+ ...|..+..++...|+++.|...++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456666666667777777766666551 1222 4788899999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 612 PENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 612 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
|+++..|..++.+|...|++++|.+.+++....
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=80.34 Aligned_cols=161 Identities=14% Similarity=0.016 Sum_probs=108.9
Q ss_pred hcCChhHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
..+++++|...|+...+. ....|..+...|.+.|++++|+..|++..+. .|+...+ . -+...+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-
Confidence 334455555555433321 3446777777788888888888888877762 2221100 0 011100
Q ss_pred HHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 536 FERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 536 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
. .+. ...|..+..+|.+.|++++|+..+++.- .+.+...|..+..+|...|+++.|...++++++++|
T Consensus 312 ---~------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 312 ---S------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp ---H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred ---H------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 0 111 3568888889999999999999888872 234678888999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHH-HHHHH
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKV-RTCMR 642 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~ 642 (710)
++...+..++.++.+.|++++|.+- ++.|.
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988753 44443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-05 Score=79.42 Aligned_cols=163 Identities=6% Similarity=-0.124 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChH----HHHHHHHHhhccCcHHHHHHHHHHHHHHh---CCCCC-hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKN-QIKPDHV----TMVAVLSACSHSGLVVEGQKQFERMTSIY---GIFPQ-LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~ 550 (710)
++..+...|...|++++|.+++.++... +..++.. ..+.+-..+...|+.+++..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3567788888888888888888877652 1112221 22223333455688888888887765432 33333 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC---C----C
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE---N----S 615 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 615 (710)
++..+...|...|++++|..++++.. .++ ...++..++..|...|+++.|...+++++.+.+. . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77888999999999999998887651 122 2446777778899999999999999888876432 2 3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 616 GYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 616 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..+..++.++...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888888899999988766553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00067 Score=66.20 Aligned_cols=177 Identities=10% Similarity=-0.030 Sum_probs=128.8
Q ss_pred hhHHHHHHhhcCC---CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc-HHHHHHHH
Q 005174 463 VPEAKSVFDLMSR---RDEVTYTSLIAGYGIQG--EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL-VVEGQKQF 536 (710)
Q Consensus 463 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 536 (710)
++++..+++.+.. ++..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-...+.+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777653 47778888877888877 489999999999986433 66677766666677777 68999999
Q ss_pred HHHHHHhCCCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-----
Q 005174 537 ERMTSIYGIFPQ-LEHFACMVDLYGRA--------------GLLNKAKEIITKMP--YTPTSAMWATLLGACQIH----- 594 (710)
Q Consensus 537 ~~~~~~~~~~p~-~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~----- 594 (710)
+.+.+. .|+ ...|+....++.+. +.++++++.+++.- .+-|...|+-+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999875 565 66777666666655 45788888888772 334888898666655544
Q ss_pred ------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 005174 595 ------RNTGIGEWAAEKLLETRPENSGYYVLIANMYA---ATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 595 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 643 (710)
+-++.+.+.++.+++++|++...+..++.+.. ..|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45778899999999999998665555544332 35666777777777664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-05 Score=80.52 Aligned_cols=119 Identities=8% Similarity=-0.018 Sum_probs=74.7
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhc
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSH 525 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 525 (710)
+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34455566777777777777776542 25667777777777777777777777777764 33 35566666677777
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH--HHhcCCHHHHHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL--YGRAGLLNKAKEIIT 573 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 573 (710)
.|++++|.+.++++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777654 444 3444444444 666677777777766
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-05 Score=75.39 Aligned_cols=48 Identities=6% Similarity=-0.019 Sum_probs=31.1
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhc-CCHHHHHHHHHhCC
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRA-GLLNKAKEIITKMP 576 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 576 (710)
.|+.++|.+.++...+ ..|+ ......+...+.+. +.+++|.++|++..
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5777788777777653 4666 33444455555555 66788888887763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.2e-05 Score=77.24 Aligned_cols=137 Identities=9% Similarity=-0.036 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVD 557 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 557 (710)
..|..+...+.+.|++++|+..|++..+. .++.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34666667777777777777777766541 11000 0000 11111 12344 567888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHH
Q 005174 558 LYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLA 635 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 635 (710)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3444 67788889999999999999999999999999999999999999999999888876
Q ss_pred HH
Q 005174 636 KV 637 (710)
Q Consensus 636 ~~ 637 (710)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.1e-05 Score=62.61 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=61.0
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQI 593 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~ 593 (710)
..+...+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.- ..| +...|..+..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33445566677777777777777653 554 6666677777777777777777776652 233 55667777777777
Q ss_pred cCChHHHHHHHHHHHhhCCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|+++.|...++.+++++|++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777777764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.6e-05 Score=59.80 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=64.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---CHHHHHHHHH
Q 005174 515 TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP---TSAMWATLLG 589 (710)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~~~l~~ 589 (710)
.+..+...+...|++++|...+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.- ..| +...|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4445555566666777777766666653 333 5566667777777777777777776651 222 4667777777
Q ss_pred HHHhc-CChHHHHHHHHHHHhhCCCCC
Q 005174 590 ACQIH-RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 590 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.+... |+++.|.+.++.+.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=7.8e-06 Score=67.16 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHH
Q 005174 562 AGLLNKAKEIITKMP-Y---TP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAK 636 (710)
Q Consensus 562 ~g~~~~A~~~~~~m~-~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 636 (710)
.|++++|+..|++.- . .| +...|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555542 2 13 334555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 005174 637 VRTCMRD 643 (710)
Q Consensus 637 ~~~~m~~ 643 (710)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00011 Score=61.26 Aligned_cols=107 Identities=10% Similarity=0.033 Sum_probs=55.4
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHH
Q 005174 516 MVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-----YTPT----SAMWA 585 (710)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~----~~~~~ 585 (710)
+..+...+...|++++|...+++.... .|+ ...+..+..+|...|++++|...+++.- ..++ ..+|.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 333444444455555555555554432 222 4444555555555555555555554441 0111 44555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 586 TLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 586 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
.+..++...|+++.|...++.++++.| ++.....+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 666666666777777777777776666 3455555444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00014 Score=60.56 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=58.1
Q ss_pred HHhhccCcHHHHHHHHHHHHHHhCCCCC-h---hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C---HHHHHHHHHHH
Q 005174 521 SACSHSGLVVEGQKQFERMTSIYGIFPQ-L---EHFACMVDLYGRAGLLNKAKEIITKMP-YTP-T---SAMWATLLGAC 591 (710)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~---~~~~~~l~~~~ 591 (710)
..+...|++++|...|+.+... .|+ . ..+..+..+|.+.|++++|...+++.- ..| + ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666543 233 2 355556666666666666666666541 122 2 44556666667
Q ss_pred HhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 592 QIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
...|+++.|...++.+++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 777777777777777777777665444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=60.83 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|...+++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555555555555555555555442 222 3344444445555555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.7e-05 Score=77.71 Aligned_cols=148 Identities=6% Similarity=-0.129 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
...|..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 446777778888889999999999887763 454432 223344444332221 126788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH-hcCCchHH
Q 005174 558 LYGRAGLLNKAKEIITKM-PYT-PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA-ATGCWDKL 634 (710)
Q Consensus 558 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 634 (710)
+|.+.|++++|+..+++. ... .+...|..+..++...|+++.|...++++++++|+++..+..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 223 367788888899999999999999999999999999988888888844 55667777
Q ss_pred HHHHHHHHhCC
Q 005174 635 AKVRTCMRDLG 645 (710)
Q Consensus 635 ~~~~~~m~~~~ 645 (710)
.+.++.|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77777776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00013 Score=76.13 Aligned_cols=95 Identities=11% Similarity=-0.048 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCC
Q 005174 550 EHFACMVDLYGRAGLLNKAKEIITKMP-YTP-T---------------SAMWATLLGACQIHRNTGIGEWAAEKLLETRP 612 (710)
Q Consensus 550 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 612 (710)
..+..+...|.+.|++++|+..|++.- ..| + ...|..+..++.+.|+++.|...++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 345555555566666666665555541 111 1 57888889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 613 ENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 613 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
+++..|..++.+|...|++++|.+.+++....
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.2e-05 Score=64.37 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC------CCch
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE------NSGY 617 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~ 617 (710)
+..+...|...|++++|.+.+++.- ..++ ...+..+...+...|+++.|...+++++++.+. ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 4444444444555554444444331 0011 234444555556666666666666665554211 1345
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 618 YVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 618 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..++.+|...|++++|.+.+++..+
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77788888888888888888776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-05 Score=81.40 Aligned_cols=125 Identities=10% Similarity=-0.013 Sum_probs=84.1
Q ss_pred hhccCcHHHHHHHHHHHHHHhC--C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYG--I---FPQ-LEHFACMVDLYGRAGLLNKAKEIITKM---------PYTPT-SAMWAT 586 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~--~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ 586 (710)
+...|++++|+.++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666665554321 1 223 455667777777777777777666654 23343 346677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhh-----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 587 LLGACQIHRNTGIGEWAAEKLLET-----RPEN---SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 587 l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
|...|...|++++|+..+++++++ .|+. ......+..++...|++++|+.++..+++...+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777788888888888888777764 5555 445568888899999999999999999876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=7.4e-05 Score=75.40 Aligned_cols=64 Identities=9% Similarity=-0.076 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00073 Score=72.18 Aligned_cols=169 Identities=7% Similarity=-0.121 Sum_probs=132.3
Q ss_pred CChhHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC
Q 005174 461 GKVPEAKSVFDLMSR--R-DEVTYTSLIAGYGIQGE----------GRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG 527 (710)
Q Consensus 461 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 527 (710)
..-++|.+.++.+.. | +...|+.--..+...|+ +++++..++++.+...+ +..+|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 344566777776653 2 45567776666666666 89999999999885322 5667777777777888
Q ss_pred --cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-------
Q 005174 528 --LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG-LLNKAKEIITKMP-YTP-TSAMWATLLGACQIH------- 594 (710)
Q Consensus 528 --~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~------- 594 (710)
+++++...++++.+. .|. ...|+.-..++.+.| .++++++.++++- ..| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999875 565 777888888888888 8999999999883 334 788998888776653
Q ss_pred -------CChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 595 -------RNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 595 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
+.++++.+.++.+++++|++...|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 556889999999999999999999999999999998554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.3e-05 Score=66.33 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC-chHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP-Y-TPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS-GYYVLIANMY 625 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 625 (710)
...|..+..+|.+.|++++|+..+++.- . +.+...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4577888888888999999888888762 2 33677888888899999999999999999999999887 4455554444
Q ss_pred H
Q 005174 626 A 626 (710)
Q Consensus 626 ~ 626 (710)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.5e-05 Score=64.07 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=50.2
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|++.+++.- ..| +...+..+..++...|+++.|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555555431000233 4455566666666666666666665551 122 45556666666666677777777
Q ss_pred HHHHHHhhCCCCCchH
Q 005174 603 AAEKLLETRPENSGYY 618 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~ 618 (710)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777766665443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0003 Score=72.95 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCh--------------------hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005174 352 ITMYSRCKDLRHAYILFKMTAEKSI--------------------ITWNSMLSGYTHLDCAEESAFLFREMFR 404 (710)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 404 (710)
...+.+.|++++|.+.|..+.+.+. .++..+...|...|++++|.+.+..+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777888888888876543100 1356677778888888888877777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=63.35 Aligned_cols=132 Identities=15% Similarity=0.017 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC----hh
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIK-PD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ----LE 550 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 550 (710)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 11 124555555666666666666666665543211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP-------YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETR 611 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 611 (710)
.+..+...+...|++++|.+.+++.- ..+ ....+..+...+...|+++.|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55666667777777777776666541 111 12345566677777788888887777776653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=8.5e-05 Score=63.32 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM--------PYTPT-SAMW----ATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
.|..+..++.+.|++++|+..+++. +..|+ ...| .....++...|++++|...++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666677777777777776666554 22664 5578 888899999999999999999999999988766
Q ss_pred HH
Q 005174 618 YV 619 (710)
Q Consensus 618 ~~ 619 (710)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 44
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0001 Score=73.42 Aligned_cols=151 Identities=9% Similarity=0.001 Sum_probs=83.3
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhcc
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHS 526 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 526 (710)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45678888999999999999999998663322111 1223344444433221 23677788888999
Q ss_pred CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCChHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-TSAMWATLLGA-CQIHRNTGIGEW 602 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~-~~~~g~~~~a~~ 602 (710)
|++++|...+++.... .|+ ...|..+..+|...|++++|+..|++.- ..| +...+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 565 7888999999999999999999999873 445 34455555544 234566777888
Q ss_pred HHHHHHhhCCCCC
Q 005174 603 AAEKLLETRPENS 615 (710)
Q Consensus 603 ~~~~~~~~~p~~~ 615 (710)
.++.+++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888888888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.1e-05 Score=60.79 Aligned_cols=90 Identities=11% Similarity=-0.059 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC------CchHH
Q 005174 548 QLEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN------SGYYV 619 (710)
Q Consensus 548 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 619 (710)
+...+..+...+.+.|++++|++.+++.- .+.+...|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888888888888888888762 23367788888888999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCchHHHHH
Q 005174 620 LIANMYAATGCWDKLAKV 637 (710)
Q Consensus 620 ~l~~~~~~~g~~~~A~~~ 637 (710)
.++.++...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 888888888888777554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00015 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+...|..+...+...|+++.|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36778888999999999999999999999999999999999999999999999999999887764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=54.62 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
...+..+...+.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777788888888888888887762 23366778888888899999999999999999999999999999988887
Q ss_pred hcC
Q 005174 627 ATG 629 (710)
Q Consensus 627 ~~g 629 (710)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=76.02 Aligned_cols=115 Identities=7% Similarity=-0.033 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCCC---CchH
Q 005174 557 DLYGRAGLLNKAKEIITKM---------PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET-----RPEN---SGYY 618 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~---~~~~ 618 (710)
..+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+..+++++++ .|+. ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 13343 457889999999999999999999998875 4444 5678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
..|+.+|..+|++++|+.++++..+.-. +..| ..||...++..+|...+.+++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654211 1111 479999999988876665443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00021 Score=58.18 Aligned_cols=76 Identities=12% Similarity=-0.004 Sum_probs=58.2
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 568 AKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
|++.+++. ...| +...|..+...+...|+++.|...++++++++|+++..|..++.+|...|++++|.+.++....
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444443 2233 5677777888888888888888888888888888888888888888888888888888877654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00093 Score=51.56 Aligned_cols=69 Identities=17% Similarity=0.034 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 578 TPTSAMWATLLGACQIHRN---TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 578 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
++|...|..+..++...++ .+.|...++++++++|+++.....++..+.+.|++++|.+.|+.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888765554 78999999999999999999999999999999999999999999987554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=9e-05 Score=63.01 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCC
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATG-----------CWDKLAKVRTCMRDLG 645 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 645 (710)
+++|+..++++++++|++...|.+++++|...| ++++|++.+++..+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 567999999999999999999999999998875 8999999988877643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00098 Score=53.40 Aligned_cols=66 Identities=9% Similarity=-0.060 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 579 PTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 579 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++...|..+...+...|+++.|...++++++++|+++..|..++.+|.+.|++++|.+.+++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999999999999999999999999999999999999988753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0005 Score=70.46 Aligned_cols=115 Identities=8% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCC---CCchH
Q 005174 557 DLYGRAGLLNKAKEIITKMP---------YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLET-----RPE---NSGYY 618 (710)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~---~~~~~ 618 (710)
.-+.+.|++++|+.++++.- ..|+ ..+++.|..+|...|++++|+..+++++++ .|+ -...|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445666666666665440 1121 345666777777777777777777777654 333 35678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 619 VLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 619 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
..|+.+|...|++++|+.++++..+.-. +..| ..||...+++.+|.+.+.+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTHG-----------------REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcC-----------------CCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999887654211 1122 479999999999999888886
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0012 Score=50.55 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+...|..+...+...|+++.|...+++++++.|+++..+..++.+|...|++++|.+.+++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888888899999999999999999999999999999999999999999999999988765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0064 Score=64.90 Aligned_cols=148 Identities=10% Similarity=-0.015 Sum_probs=119.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHhhccCc----------HHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 491 QGEGRVALKLFEEMNKNQIKPDHV-TMVAVLSACSHSGL----------VVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
....++|++.++++.. +.|+.. .|+.--.++.+.|+ ++++...++.+.+. .|. ...|+.-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445788999999998 466644 45544444555555 89999999999875 676 7788888888
Q ss_pred HHhcC--CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-----
Q 005174 559 YGRAG--LLNKAKEIITKMP--YTPTSAMWATLLGACQIHR-NTGIGEWAAEKLLETRPENSGYYVLIANMYAAT----- 628 (710)
Q Consensus 559 ~~~~g--~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 628 (710)
+.+.| ++++|++.++++- .+.|..+|+.-..+....| ..+.+.+.++++++.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 89999 7799999999983 3458899999888888888 889999999999999999999999999999885
Q ss_pred ---------CCchHHHHHHHHHHh
Q 005174 629 ---------GCWDKLAKVRTCMRD 643 (710)
Q Consensus 629 ---------g~~~~A~~~~~~m~~ 643 (710)
+++++|.+.++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 557888887776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00054 Score=58.23 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 005174 528 LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL----------LNKAKEIITKM-PYTP-TSAMWATLLGACQIH 594 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 594 (710)
.+++|.+.++...+. .|+ ...|..+..++...|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344444444444432 343 4444444444444433 23555555544 1223 344555555555544
Q ss_pred -----------CChHHHHHHHHHHHhhCCCCC
Q 005174 595 -----------RNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 595 -----------g~~~~a~~~~~~~~~~~p~~~ 615 (710)
|++++|...++++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=71.56 Aligned_cols=443 Identities=10% Similarity=0.059 Sum_probs=222.3
Q ss_pred CCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHc
Q 005174 107 KNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACG 186 (710)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 186 (710)
..+.+|+.|..++.+.+++.+|++.| +...|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 35678999999999999999887766 3456888899999999999999999888776665533 4445567888888
Q ss_pred ccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHH
Q 005174 187 EMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEM 266 (710)
Q Consensus 187 ~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 266 (710)
+.++..+-+.+.. .|+..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+.-++.
T Consensus 128 k~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp TSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred hhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887664433322 24444445666777788888888888777632 222222233333333332221111
Q ss_pred HHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcC-CCch
Q 005174 267 QEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCY-GEYE 345 (710)
Q Consensus 267 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~-~~~~ 345 (710)
-+..||-.+-.+|...+.+.-|.-.=-.+.-. || .+..++..|-..|.+++-..+++.-+ |+ ....
T Consensus 197 ------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHm 263 (624)
T 3lvg_A 197 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHM 263 (624)
T ss_dssp ------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCH
T ss_pred ------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhH
Confidence 13334444444444444333332221111110 00 01112223333344433333333222 11 1233
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHh----cCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKM----TAEK-------SIITWNSMLSGYTHLDCAEESAFLFREMFRSG-------- 406 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------- 406 (710)
.+++-|.-.|+|-. .++..+-++. +.-| ....|.-++-.|++-.+++.|... |.++.
T Consensus 264 GmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 264 GMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQ 339 (624)
T ss_dssp HHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGG
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHH
Confidence 44555655666542 2333332221 2111 335677788788877777766533 22210
Q ss_pred ------CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh--------
Q 005174 407 ------VEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL-------- 472 (710)
Q Consensus 407 ------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------- 472 (710)
-..|...|-..|+-| +...+...+-|+..+...=+...+.++|.+
T Consensus 340 Fkdii~KVaN~EiyYKAi~FY---------------------L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIk 398 (624)
T 3lvg_A 340 FKDIITKVANVELYYRAIQFY---------------------LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVK 398 (624)
T ss_dssp GTTTGGGCSCSHHHHHHHHHH---------------------TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGT
T ss_pred HHHHHHHcchHHHHHHHHHHH---------------------HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhH
Confidence 012222333333333 222233344444444444444444444443
Q ss_pred -----cCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCC
Q 005174 473 -----MSRRDEVTYTS-LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIF 546 (710)
Q Consensus 473 -----~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 546 (710)
....|....|- +-..|....++ .+...-+.+|.+-..+..|.++ ++ .
T Consensus 399 pYL~~Vq~~N~~aVNeAln~L~IEEEDy-------------------~~LR~SId~ydNFD~i~LA~rL-----Ek---H 451 (624)
T 3lvg_A 399 PYLRSVQNHNNKSVNESLNNLFITEEDY-------------------QALRTSIDAYDNFDNISLAQRL-----EK---H 451 (624)
T ss_dssp GGGTSCCCSCCHHHHHHHHHHHHHTTCC-------------------HHHHHTTSSCCCSCTTHHHHHH-----HT---C
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHhccccHHHHHHHH-----hh---C
Confidence 33334333332 23333333333 3333333344444444444332 11 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 547 PQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 547 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
+-.+....-...|.+.+++++++++.++=.. |.-.+...+..|+.+.++..++.+.+.+- .+.+......+.
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~KkDkl------ykDAietAa~S~~~elaeeLL~yFv~~g~--~EcF~a~LytCY 523 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQEEK--RECFGACLFTCY 523 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSSTTCC------TTGGGTTTTTCCCTTHHHHHHHHHHHHCS--THHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHhccc------HHHHHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHHh
Confidence 2344444556678888888888777655332 22233445567777777777777776542 233333333333
Q ss_pred hcCCchHHHHH
Q 005174 627 ATGCWDKLAKV 637 (710)
Q Consensus 627 ~~g~~~~A~~~ 637 (710)
..=+.|-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 33445555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0038 Score=52.52 Aligned_cols=110 Identities=10% Similarity=-0.076 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHH
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNK 567 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 567 (710)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46777888888777766 33333 555566666777777777777653 345566666666666 666777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhh
Q 005174 568 AKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEWAAEKLLET 610 (710)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 610 (710)
|.+.|++.....+...+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 77776665333455555555555555 55666666666655554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0032 Score=53.03 Aligned_cols=112 Identities=7% Similarity=-0.120 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQI----HRNTGIGEW 602 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 602 (710)
+++++|..+|++..+. | .|.. . |..+|...+.+++|.+.|++.....+...+..|...|.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4566777777776654 3 2332 2 666666666777777777766434566666666666665 667777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 646 (710)
.++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 456667777777777 6777777777776666543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0019 Score=52.21 Aligned_cols=65 Identities=14% Similarity=-0.005 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
...+..+...|.+.|++++|+..+++.- .+.+...|..+..++...|+++.|...+++++++.|+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4455555555555566666655555541 1223455555666666666666666666666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00046 Score=70.58 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhh-----CCC---CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCee
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLET-----RPE---NSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCA 653 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 653 (710)
.+++.|..+|...|++++|+..+++++++ .|+ -...|..|+.+|..+|++++|+.++++..+.-. +..|
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~lG-- 417 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VAHG-- 417 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC--
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HHcC--
Confidence 34555556666666666666666655543 333 355688888888888888888888876653211 1111
Q ss_pred EEEECCeEEEEeeCCCCCcchhhHHHHHH
Q 005174 654 WVDAGNVFSPFLVDDTSNVQAQEIYPLLG 682 (710)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 682 (710)
..||...+++.+|+
T Consensus 418 ---------------~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 418 ---------------KDHPYISEIKQEIE 431 (433)
T ss_dssp ---------------TTCHHHHHHHHHHH
T ss_pred ---------------CCChHHHHHHHHHh
Confidence 36888777766654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0031 Score=49.24 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 555 MVDLYGRAGLLNKAKEIITKMP-YTP-TSA-MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
....+.+.|++++|++.+++.- ..| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455666677777766666552 223 445 566666666666777777777777777776666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.019 Score=56.18 Aligned_cols=136 Identities=9% Similarity=-0.018 Sum_probs=62.9
Q ss_pred ChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHhhc----cC----cHHHHHHHHHHHHHH
Q 005174 477 DEVTYTSLIAGYGI--QG---EGRVALKLFEEMNKNQIKPDH-VTMVAVLSACSH----SG----LVVEGQKQFERMTSI 542 (710)
Q Consensus 477 ~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~~ 542 (710)
+...|...+.+... .+ ...+|+.+|++..+ ..|+. ..|..+..++.. .+ ......+.++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 56666666655432 22 34678888888887 45653 344433333320 00 000111111111000
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 543 YGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 543 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.....+..+|..+...+...|++++|...++++. ..|+...|..+...+...|+.+.|...+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112224455555444444555555555555542 23454444444445555555555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0019 Score=64.43 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=112.2
Q ss_pred chhhhhHHHHHHHHHhCCCchHHHHHHHHhHHhCCCCCchhhHHHHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhh
Q 005174 34 HIMRINLLETLKDFAGRGNLSKAFEAFTRIRITAASHDVVLDSFAHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVP 113 (710)
Q Consensus 34 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (710)
..++..|..++.+..+.|.+++-+..+...++..-.|... +.|+.+|++.+++.+..++.. .|+..-..
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID----teLi~ayAk~~rL~elEefl~-------~~N~A~iq 148 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE----TELIFALAKTNRLAELEEFIN-------GPNNAHIQ 148 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT----HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH----HHHHHHHHhhCcHHHHHHHHc-------CCCcccHH
Confidence 3445556666666666666666666665555543333333 455566665555433222211 23443344
Q ss_pred HHHHHHHccCChhHHHHhHhhCC------------------------CCCCccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 005174 114 KLVTFYASFSLYNNACFLVENSN------------------------IRYPLPWNLLISLYVRDGFYAEALCVYKQMQSR 169 (710)
Q Consensus 114 ~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~A~~l~~~m~~~ 169 (710)
.+.+-|...|.++.|.-+|..++ ..++.+|..+-.+|+..+.+..|--.--.+.-
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv- 227 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV- 227 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-
Confidence 44455555555555555554432 12445677776777777666665433333221
Q ss_pred CCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-------
Q 005174 170 RIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLE----R------- 238 (710)
Q Consensus 170 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~------- 238 (710)
.+.-+..++.-|-..|.+++-..+++....--+....+++-|.-.|++- +.++-.+.++..-. |
T Consensus 228 ----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 228 ----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp ----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred ----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2222333444556666666655555555422344667778887788775 34444444443311 2
Q ss_pred ChhHHHHHHHHHHhCCChHHHH
Q 005174 239 DAVSWNTMISAYASKGLWKEAF 260 (710)
Q Consensus 239 ~~~~~~~li~~~~~~g~~~~a~ 260 (710)
....|.-++-.|++-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 4456888888888877777664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.016 Score=56.72 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=94.8
Q ss_pred CCCChHHHHHHHHHhh--cc---CcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh---cC-C-------HHHHHHH
Q 005174 509 IKPDHVTMVAVLSACS--HS---GLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR---AG-L-------LNKAKEI 571 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g-~-------~~~A~~~ 571 (710)
.+.+...|...+.+.. .. ....+|..+|++..+. .|+ ...|..+..+|.- .+ . ...|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3556677777776653 22 3457899999999874 898 5566554444421 11 1 1123332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 572 ITKMP-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 572 ~~~m~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
...+. .+.+..+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+.+...++.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 23333 3457888888887777889999999999999999974 67788999999999999999999987765443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0076 Score=61.58 Aligned_cols=84 Identities=17% Similarity=0.010 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHHHHHHh--CCC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHH
Q 005174 527 GLVVEGQKQFERMTSIY--GIF---PQ-LEHFACMVDLYGRAGLLNKAKEIITKM---------PYTPT-SAMWATLLGA 590 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~ 590 (710)
|++++|..++++..... -+. |+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555555555544321 111 22 344555666666666666665555544 12333 2356666666
Q ss_pred HHhcCChHHHHHHHHHHHhh
Q 005174 591 CQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~~ 610 (710)
|...|++++|+..+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 66666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=49.57 Aligned_cols=88 Identities=13% Similarity=-0.007 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChHH
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAG---LLNKAKEIITKMP-YT-P--TSAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~l~~~~~~~g~~~~ 599 (710)
..+..+++.|.+.... + .++..+...+..++++.+ +.++++.++++.- .. | +...+..|.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456666777766553 2 367777778888888877 5668888877662 22 4 34566667777888888888
Q ss_pred HHHHHHHHHhhCCCCCc
Q 005174 600 GEWAAEKLLETRPENSG 616 (710)
Q Consensus 600 a~~~~~~~~~~~p~~~~ 616 (710)
|.+.++.+++++|++..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 88888888888887633
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.011 Score=45.93 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHhCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 520 LSACSHSGLVVEGQKQFERMTSIYGIFPQ-LE-HFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
...+...|++++|...++++.+. .|+ .. .+..+..+|.+.|++++|++.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888877764 555 55 7777778888888888888877766
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0083 Score=46.97 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 005174 478 EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMT 540 (710)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 540 (710)
...|..+...|...|++++|+..|++..+.. +-+...|..+..++...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555421 1123344445555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.029 Score=57.35 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-----CCCCC-hhH
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKN---QIKPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-----GIFPQ-LEH 551 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 551 (710)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++...+ .-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888888777653 12233 2366777777777888888887777765432 12333 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
++.|...|...|++++|+.++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667777777777777777776654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.23 Score=55.78 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFH 434 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 434 (710)
...+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345567777766665542 345677777777777777777777776532 223333344455555555544
Q ss_pred HHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhh
Q 005174 435 CYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDL 472 (710)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 472 (710)
+.....|. ++.-..+|.+.|++++|.+++.+
T Consensus 731 ~~a~~~~~-------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETTGK-------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCc-------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444431 23334445566666666655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.25 Score=55.52 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=53.6
Q ss_pred hhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHH
Q 005174 457 YARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQF 536 (710)
Q Consensus 457 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 536 (710)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 345566666666655543 455677777777777777777777766542 122222233344544444443
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 005174 537 ERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMP 576 (710)
Q Consensus 537 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 576 (710)
+..... | .++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333221 1 12333444555666666666665553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.029 Score=47.00 Aligned_cols=85 Identities=14% Similarity=0.004 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFP--QLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 567 (710)
....+.+-|.+..+.|. ++..+.-.+..++.+.. ++++|..+++...+. . .| ..+.+..|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 45667777777777664 56666666777788877 677999999998876 2 36 26677778888999999999
Q ss_pred HHHHHHhC-CCCCC
Q 005174 568 AKEIITKM-PYTPT 580 (710)
Q Consensus 568 A~~~~~~m-~~~p~ 580 (710)
|.+.++.. ...|+
T Consensus 90 A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 99999887 34453
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.032 Score=52.24 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CCchHHHHHHHHHHhCCCcCCCC
Q 005174 581 SAMWATLLGACQI-----HRNTGIGEWAAEKLLETRPEN-SGYYVLIANMYAAT-GCWDKLAKVRTCMRDLGVRKIPG 651 (710)
Q Consensus 581 ~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~ 651 (710)
...|..|...|.. .|+.++|++.++++++++|+. ..+++..++.|++. |+.++|.+.+++....+.+..|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 4566666666666 589999999999999999975 99999999999885 88999999988888766654444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.14 Score=40.07 Aligned_cols=69 Identities=12% Similarity=-0.042 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHH
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKMP---------YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLI 621 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 621 (710)
..|...+.+.|+++.|...++..- ..+...++..|..++.+.|+++.|...++.+++++|+++.+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 344444555555555554444330 123456777888888888888888888888888888876654443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=1.7 Score=37.37 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=81.5
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.--|.-.|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344778888888887776 4677899999999999999999998887752 22333335556666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 536 FERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 536 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
-+..... | -++.-...+.-.|+++++.+++.+...-|... -....+|-.+.|.+..+.
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHH
Confidence 4443332 1 25555566777889999999888875322111 112345665555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.22 Score=37.93 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 549 LEHFACMVDLYGRAGL---LNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
...+..+..++...++ .++|..++++. ...| +...+..+...+...|+++.|...++.+++.+|+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4445555555543332 45555555554 1222 3444444555555666666666666666666655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.11 Score=41.77 Aligned_cols=91 Identities=11% Similarity=-0.026 Sum_probs=60.5
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCh
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNK---AKEIITKMP-YT-P--TSAMWATLLGACQIHRNT 597 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~-~~-p--~~~~~~~l~~~~~~~g~~ 597 (710)
....+..+++.|...... |. |+..+-..+..++.+..+..+ ++.++++.- .. | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455666666665543 32 677777778888888776665 777777763 22 3 233444566678888888
Q ss_pred HHHHHHHHHHHhhCCCCCch
Q 005174 598 GIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~ 617 (710)
+.|.+.++.+++++|++..+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888876443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=1.3 Score=35.69 Aligned_cols=140 Identities=13% Similarity=0.033 Sum_probs=83.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.-.|..++..++..+.... .+..-++-+|--....-+=+-..+.++.+-+-|.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456667777777766542 23334444443333333334444444444332211 235555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
..-+-.+. .+....+.-++.....|.-+.-.+.+..++.-+|.+|+....++++|.+.|...+|.+++++.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 234444555667777788777777777665556667888888889999999988888888888887774
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=1.9 Score=37.05 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHH
Q 005174 354 MYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEF 433 (710)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 433 (710)
....+|+++.|.++.+.+ .+...|..+.......|+++-|...|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777776655 3456777777777777777777777776532 23333344445555555555
Q ss_pred HHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcC
Q 005174 434 HCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMS 474 (710)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 474 (710)
-+.....|. ++.-...+.-.|+++++.++|.+..
T Consensus 83 a~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 444444441 3333344445556666555554433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.4 Score=38.56 Aligned_cols=91 Identities=11% Similarity=-0.073 Sum_probs=60.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHH---HHHHHHHHHHHhCCCC--ChhHHHHHHHHHH
Q 005174 486 AGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVE---GQKQFERMTSIYGIFP--QLEHFACMVDLYG 560 (710)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 560 (710)
...........+.+-|.+....|. |+..+--.+..++.+...... +..+++.+... -.| ..+....|.-++.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 333444455666667776666554 666665566667777776555 88888877653 225 2556667888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC
Q 005174 561 RAGLLNKAKEIITKM-PYTP 579 (710)
Q Consensus 561 ~~g~~~~A~~~~~~m-~~~p 579 (710)
+.|++++|.+.++.+ ...|
T Consensus 86 klg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhhhHHHHHHHHHHHHHhCC
Confidence 999999999998887 3345
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.27 Score=38.39 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETR-------PENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..-+..|...+...|+++.|...++.+++.. +..+..|..|+.+|.+.|++++|...+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999998763 23466799999999999999999999888764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=1.5 Score=35.96 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLN---KAKEIITKMP-YTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|+..+-..+..++.+..+.+ +++.++++.- ..| .....--|.-++.+.|+++.|.+..+.+++++|+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 466667667777777776544 4555665541 123 23344455566777888888888888888888865
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=8.1 Score=41.13 Aligned_cols=253 Identities=7% Similarity=-0.011 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC
Q 005174 346 NVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA 425 (710)
Q Consensus 346 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 425 (710)
..-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3345556666777778777776655 33344444555666677777777766666665554 222233444555555444
Q ss_pred chHH--HHHHHHHHHHhCC----------CCCch-HHHhHHhhhhhhcCChhHHHHHHhhcCCCChh---HHHHHHHHHH
Q 005174 426 NLQH--GKEFHCYILRRAM----------FNEHL-LLWNSLVEMYARSGKVPEAKSVFDLMSRRDEV---TYTSLIAGYG 489 (710)
Q Consensus 426 ~~~~--a~~~~~~~~~~~~----------~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 489 (710)
.+.. ..+-...+...+. ++++. .....++..+. +...+....... .++.. .+..-+.-+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 3221 1111222222220 11111 11122222221 222222222221 11111 1111223333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHH----HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPDHVTM----VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLL 565 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 565 (710)
+ .+.+.|..+|....+.+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37899999998886533 2233322 22333334445355666666665432 34433333444455578999
Q ss_pred HHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 566 NKAKEIITKMPYTP-T-SAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 566 ~~A~~~~~~m~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
+.|...|+.|+..+ + ....--+..+....|+.+.|...++.+.+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999997433 2 22233455677788999999998888875
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.69 Score=43.35 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=71.9
Q ss_pred cCChhHHHHHHhhcCCCCh--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHCCCCCC---hHHHHHHHHHhhc
Q 005174 460 SGKVPEAKSVFDLMSRRDE--VTYTSLIA-GYGIQ--GE------GRVALKLFEEMNKNQIKPD---HVTMVAVLSACSH 525 (710)
Q Consensus 460 ~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 525 (710)
.|+..+-...+.++...++ ..|..++. ++... |. ...|...+++..+ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444555555554333 34555544 33332 22 4567777777776 4566 4467777777777
Q ss_pred -----cCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 005174 526 -----SGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRA-GLLNKAKEIITKM 575 (710)
Q Consensus 526 -----~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~-g~~~~A~~~~~~m 575 (710)
.|+.++|.+.|++..+ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4888888888888876 4673 67777888888874 8888888888776
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.75 Score=37.97 Aligned_cols=55 Identities=7% Similarity=-0.061 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch
Q 005174 563 GLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY 617 (710)
Q Consensus 563 g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 617 (710)
++.++|.++|+.+. .+.-...|-.....-.++|++..|.+.+..++.+.|...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 56667777776651 12226677666666778899999999999888888875443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.59 Score=50.75 Aligned_cols=54 Identities=7% Similarity=-0.074 Sum_probs=50.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..|...|+++.|...++++...-|.+-.+|..|+.+|...|+|+.|+=.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 447788999999999999999999999999999999999999999999888774
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.52 E-value=4.7 Score=32.57 Aligned_cols=139 Identities=11% Similarity=-0.033 Sum_probs=86.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHH
Q 005174 387 THLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEA 466 (710)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 466 (710)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..+.++.+-+. | -..+||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--F------------Dis~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--F------------DLDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--S------------CGGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh--c------------CcHhhhcHHHH
Confidence 3456677777777776654 24445555554443333333333332222111 0 12357777777
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 467 KSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
...+-.+.. +....+..++.+...|+-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 766665543 334556667788888888888888888544 35677788888888888888888888888888775 54
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.25 E-value=10 Score=36.06 Aligned_cols=164 Identities=11% Similarity=0.075 Sum_probs=104.7
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHH----HHHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCV----YKQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566668888999999988753 35566777887766654 5556677899998888888888765
Q ss_pred cC--CchHHHHHHHHHH-----hc--CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CC
Q 005174 188 MM--DVDFGRVVHSCID-----AC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASK---GL 255 (710)
Q Consensus 188 ~~--~~~~a~~~~~~~~-----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 255 (710)
.. .... ..+...++ .| ..-++..+..+...|.+.|++.+|...|-.-...|...+..++.-+... |.
T Consensus 105 ~p~~~~~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNL-KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTH-HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 43 2222 22222222 22 2347788899999999999999999887633222566666666555544 54
Q ss_pred hHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 256 WKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMR 302 (710)
Q Consensus 256 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 302 (710)
..++--++.+. +-.|.-.|+...|..+|+...
T Consensus 184 ~~e~dlf~~Ra---------------VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRL---------------VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHH
Confidence 44432222221 223445677777777777654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.91 E-value=23 Score=39.41 Aligned_cols=269 Identities=12% Similarity=0.044 Sum_probs=135.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC--CCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCC--C-----CChhHHHH--H
Q 005174 248 SAYASKGLWKEAFQLFVEMQEEG--VEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQET--Y-----LDSVATVI--G 316 (710)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~-----p~~~t~~~--~ 316 (710)
-+....|+.++++.++......+ -.+....-..+.-+....|..+++.+++.......- . +....-.+ +
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667788888887776654321 111122223344456667776678887777654321 0 10111111 1
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChH
Q 005174 317 LGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEK---SIITWNSMLSGYTHLDCAE 393 (710)
Q Consensus 317 l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~ 393 (710)
--++...++-+....+...+....-..-....-+|...|.-.|+-+....++..+.+. ++.-.-.+.-++...|+.+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 1122223333333333333322110000011223444455667777766666654321 2222333444556778888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHH---HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHH
Q 005174 394 ESAFLFREMFRSGVEPNYVTIA---SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVF 470 (710)
Q Consensus 394 ~a~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 470 (710)
.+..+++.+.... .|. .-|. .+.-+|+..|+.....+++..+.... ..++.-.-.+.-+....|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888888877642 222 2333 23346778888888888888887653 233332222223344467777777887
Q ss_pred hhcCC-CChhHHHH--HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHHHHHHHHHh
Q 005174 471 DLMSR-RDEVTYTS--LIAGYGIQGEG-RVALKLFEEMNKNQIKPDHVTMVAVLSAC 523 (710)
Q Consensus 471 ~~~~~-~~~~~~~~--li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 523 (710)
+.+.+ .|...-.. +.-|....|.. .+|+.++..+.. .+|..+-...+.++
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 75543 34433222 33334444443 678888888874 44544433333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.09 E-value=1.5 Score=35.46 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 546 FPQLEHFACMVDLYGRAGLLN---KAKEIITKM-PYTP--TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
.|+..+-..+..++.+..+.+ +++.++++. ...| ....+--|.-++.+.|+++.|.+..+.+++++|+|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 455666666667777666543 455555554 1223 244555566677777777777777777777777653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.00 E-value=14 Score=35.47 Aligned_cols=166 Identities=9% Similarity=0.008 Sum_probs=104.6
Q ss_pred hhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCchHHHHHH----HHHHhCCCCCCcccHHHHHHHHcc
Q 005174 112 VPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYAEALCVY----KQMQSRRIRGDNFTYPSVLKACGE 187 (710)
Q Consensus 112 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 187 (710)
+.++..-|.+.+++++|++++.. -...+.+.|+...|-++- +...+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556668889999999998753 355667778877666554 556678899999988888888876
Q ss_pred cCCch-HHHHHHHHH----H-hc--CCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHH
Q 005174 188 MMDVD-FGRVVHSCI----D-AC--HEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEA 259 (710)
Q Consensus 188 ~~~~~-~a~~~~~~~----~-~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 259 (710)
....+ .-..+...+ . .| ..-|+.....+...|.+.+++.+|...|=.-..+++..|..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55322 112222222 2 23 3447788888999999999999999988432222335666655555554443332
Q ss_pred HHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 260 FQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRT 303 (710)
Q Consensus 260 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 303 (710)
--++.+ .+--|.-.++...|..+++...+
T Consensus 187 dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYCAR---------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 222211 12234556677777776665543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.90 E-value=1.1 Score=37.02 Aligned_cols=53 Identities=8% Similarity=-0.103 Sum_probs=43.9
Q ss_pred cCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 594 HRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 594 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
.+|.+.|++.++.++++...-+..|...+.--.+.|+++.|.+++.....++.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 37888899999999888555567777778878899999999999988877655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.17 E-value=3.8 Score=34.57 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 005174 549 LEHFACMVDLYGRAGLLNKAKEIITKMPY 577 (710)
Q Consensus 549 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 577 (710)
.+.-.-+..+|.+.|++++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 44555578888888999999999888873
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.04 E-value=6 Score=29.79 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 190 DVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 190 ~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..++|..|-+.+. .+. ...+--.-+..+.+.|++++|..+.+..+-||.+.|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777766 443 33333344455677888888888888888888888877654 356777777777766655
Q ss_pred cC
Q 005174 269 EG 270 (710)
Q Consensus 269 ~g 270 (710)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.46 E-value=6.6 Score=32.13 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 600 GEWAAEKLLETRPE-NSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 600 a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
+...++.+..-.|. .......|+-.+.+.|++++|.+..+.+.
T Consensus 61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444443442 23333444445555555555555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.39 E-value=5.8 Score=29.83 Aligned_cols=77 Identities=8% Similarity=-0.032 Sum_probs=53.3
Q ss_pred CchHHHHHHHHHH-hcCCChHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005174 190 DVDFGRVVHSCID-ACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQE 268 (710)
Q Consensus 190 ~~~~a~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 268 (710)
..++|..|-+.+. .+. ...+--.-+..+.+.|++++|..+.+..+-||.+.|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 4567777777766 443 33333444555677888888888888888888888877654 467777777777777765
Q ss_pred cC
Q 005174 269 EG 270 (710)
Q Consensus 269 ~g 270 (710)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.29 E-value=1.7 Score=35.13 Aligned_cols=70 Identities=10% Similarity=-0.078 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHhhccC---cHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 005174 509 IKPDHVTMVAVLSACSHSG---LVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPTS 581 (710)
Q Consensus 509 ~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 581 (710)
-.|+..|--.+..++.++. +..+|..+++.+.+. .|. .+.+--|.-++.+.|++++|.+..+.+ ...|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3455554444444555544 455677888777764 353 566677788888888888888888876 455543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.00 E-value=24 Score=33.56 Aligned_cols=169 Identities=14% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCcHHHHHHHHHHHhc
Q 005174 348 RNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFL----FREMFRSGVEPNYVTIASILPLCAR 423 (710)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 423 (710)
+.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 356777788999999999876432 3345667776665554 5555567889998888888877665
Q ss_pred cCch-----HHHHHHHHHHHHhCC-CCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhc---CCh
Q 005174 424 VANL-----QHGKEFHCYILRRAM-FNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQ---GEG 494 (710)
Q Consensus 424 ~~~~-----~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 494 (710)
...- .-.........+.|. ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 3321 222233333334432 2246778888999999999999999887633222455555554444333 332
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 495 RVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 495 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
.++ |...-.+++. |...|++..|..+++...+.
T Consensus 185 ~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 221 2222223333 44567888998888877654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.37 E-value=27 Score=33.52 Aligned_cols=167 Identities=12% Similarity=0.120 Sum_probs=101.9
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChHHHHHHHHHhh
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLF----EEMNKNQIKPDHVTMVAVLSACS 524 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 524 (710)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 355666667888999999887644 234556667766655544 44555778888887777777665
Q ss_pred ccCc--HHHHHHHHHHHH---HHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005174 525 HSGL--VVEGQKQFERMT---SIYGIFP--QLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNT 597 (710)
Q Consensus 525 ~~g~--~~~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~ 597 (710)
.... .+. ..+.+++. .++|-.| ++.....+...|.+.|++.+|...|= ....+....+..++.-+...+..
T Consensus 106 ~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 5442 111 22222221 1224333 36777889999999999999998884 23333346666666555444332
Q ss_pred HHHHHHHHHHHhhCCCCCchH-HHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 598 GIGEWAAEKLLETRPENSGYY-VLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 598 ~~a~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.....| ...+--|...|+...|..++....+
T Consensus 184 ---------------~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 ---------------HTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------ccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 122222 2333457788899999888776654
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=85.05 E-value=21 Score=38.09 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 005174 214 ALVSMYGKFGQVDVARRLFDKMLE---RDAVSWNTMISAYAS 252 (710)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 252 (710)
++|-.+.|+|++++|.++.++... .-...+-..+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 567778899999999998877632 222356666666664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.87 E-value=6.4 Score=29.85 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+.-+..+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44466677777777788999999999999999999999999999999876 3344556776664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.84 E-value=11 Score=28.44 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++... +.|..+++...+..+..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555555555555443 333323334557788999999999999999999999887654 778888888888888877
Q ss_pred CCCCcHHHHH
Q 005174 406 GVEPNYVTIA 415 (710)
Q Consensus 406 g~~p~~~t~~ 415 (710)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.63 E-value=11 Score=41.10 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=37.5
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 005174 319 ACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTA 372 (710)
Q Consensus 319 ~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (710)
.|...|+++.|..+-...+... +.+-.+|..|..+|.+.|+++.|.-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3555677777777776665543 4455677888888888888888888877776
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.43 E-value=11 Score=28.37 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 005174 326 LKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRS 405 (710)
Q Consensus 326 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 405 (710)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++... +.|..+++...+..+..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 4555556555555443 333323334557789999999999999999999999888654 678888888888788777
Q ss_pred CCCCcHHHHH
Q 005174 406 GVEPNYVTIA 415 (710)
Q Consensus 406 g~~p~~~t~~ 415 (710)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.07 E-value=6.8 Score=29.70 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=39.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 574 KMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 574 ~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
.+...|++.+..+.+.||++.+|+..|.+.++-+.....+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3457799999999999999999999999999988877655555566554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.35 E-value=22 Score=41.29 Aligned_cols=143 Identities=11% Similarity=0.043 Sum_probs=94.7
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-------------------
Q 005174 416 SILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR------------------- 476 (710)
Q Consensus 416 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------- 476 (710)
.++..|...+..+.+.++... ++.+....-.+..+|..+|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345556666666666654432 4455555556667888899999999999876421
Q ss_pred -------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--H--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 477 -------DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH--V--TMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 477 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
-..-|..++..+.+.+.++.++++-+...+....-+. . .|..++.++...|++++|...+..+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 0113566778888888888888887776653211111 1 4677888888899999998888776532
Q ss_pred CCChhHHHHHHHHHHhcCCHHH
Q 005174 546 FPQLEHFACMVDLYGRAGLLNK 567 (710)
Q Consensus 546 ~p~~~~~~~li~~~~~~g~~~~ 567 (710)
.--......||..++..|..++
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhh
Confidence 2235667777777777666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.31 E-value=45 Score=33.76 Aligned_cols=95 Identities=8% Similarity=-0.004 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHhhccCcHHHHHHHHHHHHHHh-CCC--CC--hh
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKN--QIKPD---HVTMVAVLSACSHSGLVVEGQKQFERMTSIY-GIF--PQ--LE 550 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~--p~--~~ 550 (710)
...|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..++.++.... ... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998753 22211 2256667778899999999999999875421 122 22 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
.+.+++..+...+++.+|-+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999998877765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.55 E-value=9.4 Score=38.07 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS----IYGIFPQLEHFA 553 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 553 (710)
...++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+.... ..|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344667778889999999888888764 244677888999999999999999988888654 348888865543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.73 E-value=5.5 Score=33.62 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=64.7
Q ss_pred CCCCCChH--HHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 005174 507 NQIKPDHV--TMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQL-------EHFACMVDLYGRAGLLNKAKEIITKM-- 575 (710)
Q Consensus 507 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-- 575 (710)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555543 33444566777888888888877765543334442 35667778888888888888888764
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 005174 576 -----PYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCM 641 (710)
Q Consensus 576 -----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 641 (710)
+..++. ..++ . ...... .-.. .+.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~-~---~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPST-G---NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--cccc-c---ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 111111 1011 0 000000 0000 1223456677999999999999999985543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=4.2 Score=40.62 Aligned_cols=58 Identities=9% Similarity=-0.051 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 585 ATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 585 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
..++.++...|+.+.+...++.+...+|-+-..|..+..+|.+.|+..+|.+.+...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666677888888888888888888887788888888888888888888777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 710 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.004
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
Query: 136 NIRYPLPWNLLISLYVRDGFYAEALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGR 195
+ + + L +Y G A+ Y++ + Y ++ A E V
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291
Query: 196 VVHSCIDACHEWSLFVHNALVSMYGKFGQVDVARRLFDKMLERD---AVSWNTMISAYAS 252
++ N L ++ + G ++ A RL+ K LE A + + + S
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 253 KGLWKEAFQLF 263
+G +EA +
Sbjct: 352 QGKLQEALMHY 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.92 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.27 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.23 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.16 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.79 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.47 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.25 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.05 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.66 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.76 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.3 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.85 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.57 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.55 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.19 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.78 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-19 Score=183.54 Aligned_cols=375 Identities=10% Similarity=0.038 Sum_probs=274.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCCh
Q 005174 215 LVSMYGKFGQVDVARRLFDKMLE--R-DAVSWNTMISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNF 291 (710)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 291 (710)
+...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|...|++..+... -+..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccc
Confidence 34556677888888888888732 3 566788888888888888888888888876532 2456778888888888888
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 005174 292 KGVLELLSRMRTQETYLDSVATVIGLGACSHVGALKLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMT 371 (710)
Q Consensus 292 ~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (710)
++|+..+.............. ......................... .
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~ 130 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGY-INLAAALVAAGDMEGAVQAYVSALQ--------------------------------Y 130 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHSCSSHHHHHHHHHHH--------------------------------H
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccc--------------------------------c
Confidence 888888888776542222211 1111111111221111111111111 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHh
Q 005174 372 AEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWN 451 (710)
Q Consensus 372 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 451 (710)
.......+..........+....+...+....... +-+...+..+...+...|.++.|...+...++.. +.+...+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 207 (388)
T d1w3ba_ 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYI 207 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHH
Confidence 12233334444455556666666666666665542 2334555566667777778888888887777764 55677888
Q ss_pred HHhhhhhhcCChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccC
Q 005174 452 SLVEMYARSGKVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSG 527 (710)
Q Consensus 452 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 527 (710)
.+...|...|++++|...|++.. ..+...+..+...+.+.|++++|+..|++..+. .|+ ..++..+...+...|
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 285 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 88899999999999999988765 346678888999999999999999999999884 454 668888899999999
Q ss_pred cHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 005174 528 LVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAE 605 (710)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 605 (710)
++++|.+.++..... ...+...+..+...|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...++
T Consensus 286 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998874 3344788899999999999999999999986 4455 57788899999999999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 606 KLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 606 ~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
++++++|+++..|..|+.+|.+.|+
T Consensus 364 ~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=8.6e-20 Score=186.26 Aligned_cols=373 Identities=11% Similarity=0.065 Sum_probs=290.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCceehHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhHHHHHHHHhhccCCh
Q 005174 247 ISAYASKGLWKEAFQLFVEMQEEGVEVNVITWNTIAGGCLRTGNFKGVLELLSRMRTQETYLDSVATVIGLGACSHVGAL 326 (710)
Q Consensus 247 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~~l~~~~~~~~~ 326 (710)
...+.+.|++++|.+.|+++.+.. +-+...+..+...+.+.|++++|+..|++..+..
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------- 63 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------------- 63 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence 344566778888888887776642 2245566777777777777777777777765532
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005174 327 KLGKEIHGSAVRGCYGEYENVRNALITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMF 403 (710)
Q Consensus 327 ~~a~~i~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 403 (710)
+.+..++..+...|.+.|++++|...+..... .+...+..........+....+........
T Consensus 64 ---------------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 64 ---------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23344566777788888888888888876543 233445555555666666666666666665
Q ss_pred HcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhH
Q 005174 404 RSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVT 480 (710)
Q Consensus 404 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~ 480 (710)
..... ...............+....+...+....... +.+...+..+...+...|++++|...+++..+ .+...
T Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (388)
T d1w3ba_ 129 QYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA 205 (388)
T ss_dssp HHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccc-cccccccccccccccchhhhhHHHHHHhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHH
Confidence 55433 33344445555666777788888887777764 66678888999999999999999999987653 36678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLY 559 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 559 (710)
|..+...+...|++++|+..|++....+ ..+...+..+...+.+.|++++|...|+++.+ +.|+ ...+..+..+|
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998853 33566777888889999999999999999886 4777 78899999999
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHH
Q 005174 560 GRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 637 (710)
...|++++|++.++... .+.+...+..+...+...|+++.|...++++++++|+++..|..++.+|.+.|++++|.+.
T Consensus 282 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998773 4457788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 638 RTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 638 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
+++..+ .+|+...++..|..+..+|+
T Consensus 362 ~~~al~--------------------------l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 362 YKEAIR--------------------------ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHT--------------------------TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHH--------------------------hCCCCHHHHHHHHHHHHHcC
Confidence 988653 46777788888888777653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.2e-12 Score=128.91 Aligned_cols=265 Identities=11% Similarity=-0.003 Sum_probs=174.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCch
Q 005174 351 LITMYSRCKDLRHAYILFKMTAE---KSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANL 427 (710)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 427 (710)
....|.+.|++++|...|+...+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 34456667777777777766543 244566666677777777777777777666542 22344555555566666666
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005174 428 QHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 428 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
+.|.+.+..+.... +............. ...+.......+..+...+...+|...|.+..+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666666655543 11110000000000 0001111111223344556778888888887763
Q ss_pred C-CCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 005174 508 Q-IKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAM 583 (710)
Q Consensus 508 g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 583 (710)
. -.++...+..+...+...|++++|...+++.... .|+ ...|..+..+|.+.|++++|++.+++. ...| +..+
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 2 2335667788888889999999999999998864 666 788999999999999999999999886 2334 6778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-----------hHHHHHHHHHhcCCchHHHHH
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSG-----------YYVLIANMYAATGCWDKLAKV 637 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 637 (710)
|..+..+|...|++++|...++++++++|++.. .|..+..++...|+++.+...
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999888744 345677788888888766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.2e-13 Score=130.18 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=156.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC
Q 005174 382 MLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG 461 (710)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 461 (710)
....+.+.|++++|+..|++.++.. +-+..++..+..++...|+++.|...+.++++.. +.+...+..+...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccc
Confidence 4555677777777777777777652 2234455555555555666666666665555543 334444555555555555
Q ss_pred ChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHhhc
Q 005174 462 KVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDH----------------VTMVAVLSACSH 525 (710)
Q Consensus 462 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~ 525 (710)
++++|.+.++ +.... .|+. ......+..+..
T Consensus 102 ~~~~A~~~~~-------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (323)
T d1fcha_ 102 LQRQACEILR-------------------------------DWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148 (323)
T ss_dssp CHHHHHHHHH-------------------------------HHHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred cccccccchh-------------------------------hHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHH
Confidence 5555555544 44331 1110 011112223344
Q ss_pred cCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 005174 526 SGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWA 603 (710)
Q Consensus 526 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 603 (710)
.+...++...+........-.++...+..+...+.+.|++++|+..+++. ...| +...|..+...+...|+++.|...
T Consensus 149 ~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHH
Confidence 56678888888888765233344677889999999999999999999986 2234 678899999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 604 AEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 604 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
++++++++|+++..|..++.+|.+.|++++|.+.+++..+.
T Consensus 229 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 229 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=5e-08 Score=96.27 Aligned_cols=195 Identities=11% Similarity=0.001 Sum_probs=134.0
Q ss_pred HHhHHhhhhhhcCChhHHHHHHhhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCh
Q 005174 449 LWNSLVEMYARSGKVPEAKSVFDLMSR-------R----DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI----KPDH 513 (710)
Q Consensus 449 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~ 513 (710)
.+..+...|...|++..|...+..... + ....+..+...+...|+++.+...+.+...... ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 344445556666666666666554321 1 122455667778888899999888888776321 1223
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-----CCHH
Q 005174 514 VTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACMVDLYGRAGLLNKAKEIITKMP-YT-----PTSA 582 (710)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-----p~~~ 582 (710)
.++......+...+...++...+........-... ...+..+...+...|+.++|...+++.. .. ....
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 34555556677788888888887776654322221 2345667778889999999999998873 11 1244
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhh------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLET------RPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
.+..+..++...|+++.|...++.++.. .|+....+..++.+|.+.|++++|.+.+++...
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667778889999999999999888743 345567889999999999999999999887654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=4.5e-08 Score=94.51 Aligned_cols=186 Identities=11% Similarity=0.096 Sum_probs=144.0
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC---C-hhHHHHHHHHHHhcCChHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR---D-EVTYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~ 500 (710)
+..+.+..++++.++.. .+.+...+..++..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++
T Consensus 78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34577888888888765 5667778888889999999999999999887542 3 34688889999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHH-HhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 005174 501 FEEMNKNQIKPDHVTMVAVLS-ACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM--- 575 (710)
Q Consensus 501 ~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--- 575 (710)
|+++.+.+.. +...|..... -+...|+.+.|..+|+.+... .|+ ...|..+++.+.+.|+.++|..+|++.
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999875432 3333333322 234468899999999999875 344 778889999999999999999999885
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCC
Q 005174 576 -PYTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENS 615 (710)
Q Consensus 576 -~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 615 (710)
+..|+ ...|...+..-..+|+.+.+..+.+++.++.|+..
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 23332 46788888888899999999999999988888653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=8.2e-08 Score=94.68 Aligned_cols=283 Identities=9% Similarity=-0.063 Sum_probs=159.1
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-C-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc----HHHHHHHHHHH
Q 005174 355 YSRCKDLRHAYILFKMTAE--K-S-----IITWNSMLSGYTHLDCAEESAFLFREMFRSGV-EPN----YVTIASILPLC 421 (710)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~--~-~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~ 421 (710)
+...|++++|..+|++..+ | + ...++.+...|...|++++|+..|++...... .++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4445555555555544321 1 1 12344455555556666666666655543210 011 12233334445
Q ss_pred hccCchHHHHHHHHHHHHhCC---CCC---chHHHhHHhhhhhhcCChhHHHHHHhhcCC----C----ChhHHHHHHHH
Q 005174 422 ARVANLQHGKEFHCYILRRAM---FNE---HLLLWNSLVEMYARSGKVPEAKSVFDLMSR----R----DEVTYTSLIAG 487 (710)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~ 487 (710)
...|++..+...+........ ... ....+..+...|...|+++.+...+..... . ....+..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 555666666665555443210 111 123445556667777777777777765431 1 23345555666
Q ss_pred HHhcCChHHHHHHHHHHHHC--CCCCC----hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHH
Q 005174 488 YGIQGEGRVALKLFEEMNKN--QIKPD----HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLY 559 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~--g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 559 (710)
+...++..++...+.+.... ..... ...+..+...+...|++++|...++.......-.+. ...+..+...|
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77778888877777665441 11111 123444555667778888888888776542111111 33455677888
Q ss_pred HhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC---------CchHHHHH
Q 005174 560 GRAGLLNKAKEIITKM-------PYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN---------SGYYVLIA 622 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~ 622 (710)
...|++++|...+++. ...|+ ...+..+...+...|+.+.|.+.+++++++.+.. ...+..+.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 8888888888887765 22332 3456667778888888888888888887764321 22344455
Q ss_pred HHHHhcCCchHHHHH
Q 005174 623 NMYAATGCWDKLAKV 637 (710)
Q Consensus 623 ~~~~~~g~~~~A~~~ 637 (710)
..+...|+++++.+-
T Consensus 342 ~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCSCHHHHH
T ss_pred HHHHhcCCChHHHHH
Confidence 666777888887653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.3e-08 Score=93.02 Aligned_cols=208 Identities=8% Similarity=0.058 Sum_probs=129.7
Q ss_pred CchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcC-ChhHHHHHHhhcC---CCChhHHHHHHHHHHhcCChHHHHHH
Q 005174 425 ANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSG-KVPEAKSVFDLMS---RRDEVTYTSLIAGYGIQGEGRVALKL 500 (710)
Q Consensus 425 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (710)
+..++|.+++..+++.. |.+..+|+....++...| ++++|...++... ..+..+|+.+...+...|++++|+..
T Consensus 57 e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 57 ERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp CCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence 33444444444444432 444555566555555554 3666666666554 23566777777777777777777777
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCC------HHHHHHHH
Q 005174 501 FEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGL------LNKAKEII 572 (710)
Q Consensus 501 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~ 572 (710)
++++.+. .| +...|..+...+.+.|++++|...++.+.+. .|+ ...|+.+..++.+.+. +++|++.+
T Consensus 135 ~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 135 IADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred Hhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 7777763 33 4567777777777777777777777777753 565 5566666666655554 56777776
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHhc--CCchHHHHHHHH
Q 005174 573 TKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG--YYVLIANMYAAT--GCWDKLAKVRTC 640 (710)
Q Consensus 573 ~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~~~~~ 640 (710)
.+. ...| +...|..+...+... ..+.+...++.+.++.|+... .+..++.+|... +..+.+.+.+++
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~k 282 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 282 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 665 2334 677787776665544 456688888999888887544 445677777644 444455444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.2e-07 Score=91.33 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCCchHHHhHHhh
Q 005174 378 TWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNY-VTIASILPLCARVA-NLQHGKEFHCYILRRAMFNEHLLLWNSLVE 455 (710)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 455 (710)
.++.+...+.+.+.+++|+.++++.++. .|+. ..|.....++...+ ++++|...+..+++.. +.+..+|+.+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhH
Confidence 3444555556666666666666666664 3333 33444444445444 3666666666666654 556677777777
Q ss_pred hhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccC----
Q 005174 456 MYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSG---- 527 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g---- 527 (710)
.+.+.|++++|...|+++.+ .+...|+.+...+...|++++|+..|+++++. .| +...|+.+...+.+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 77777777777777776653 35667777777777777777777777777764 33 3445554443333333
Q ss_pred --cHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 005174 528 --LVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM----PYTPTSAMWATLLGAC 591 (710)
Q Consensus 528 --~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~ 591 (710)
.+++|...+..+.+. .|+ ...|+.+...+...| .+++.+.++.. +...+...+..+...|
T Consensus 199 ~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 356677777766653 565 556666655554433 34454444433 2223455555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=2.5e-07 Score=89.08 Aligned_cols=184 Identities=7% Similarity=-0.030 Sum_probs=146.1
Q ss_pred hcCChhHHHHHHhhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHH
Q 005174 459 RSGKVPEAKSVFDLMSR----RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 459 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
..+..++|..+|++..+ .+...|...+..+...|+.+.|..+|+++.+.........|...+..+.+.|+++.|++
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 34456788889887643 35667888999999999999999999999875333334578889999999999999999
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHH-HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhh
Q 005174 535 QFERMTSIYGIFPQ-LEHFACMVDLY-GRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLET 610 (710)
Q Consensus 535 ~~~~~~~~~~~~p~-~~~~~~li~~~-~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 610 (710)
+|+.+.+. .|+ ...|...+... ...|+.+.|..+|+.+- .+.+...|...+..+...|+.+.|+.+++++++.
T Consensus 156 i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99998753 454 55555555443 44689999999999883 3346889999999999999999999999999998
Q ss_pred CCCCCc----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 005174 611 RPENSG----YYVLIANMYAATGCWDKLAKVRTCMRDLG 645 (710)
Q Consensus 611 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 645 (710)
.|.++. .|...+..-...|+.+.+.++.+++.+.-
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 876654 57777777778899999999999887643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=5.2e-09 Score=102.74 Aligned_cols=228 Identities=9% Similarity=-0.039 Sum_probs=165.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCCchHHHh-HHhhhhhhcCChhH
Q 005174 389 LDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVA--NLQHGKEFHCYILRRAMFNEHLLLWN-SLVEMYARSGKVPE 465 (710)
Q Consensus 389 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~ 465 (710)
.|++++|+..++...+.. +-+...+.....++...+ +++.+...+..+++.. +.+...+. .....+...+..++
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHH
Confidence 445678888888887763 224444555544544444 5788888888888875 44555544 44567778899999
Q ss_pred HHHHHhhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 005174 466 AKSVFDLMSRR---DEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSI 542 (710)
Q Consensus 466 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 542 (710)
|...++.+.+. +...|+.+...+...|++++|...+.+..+. .|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 99999988754 6678888999999999988887666554432 22221 2223344456666777777777653
Q ss_pred hCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHH
Q 005174 543 YGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYV 619 (710)
Q Consensus 543 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 619 (710)
.|+ ...+..++..+...|+.++|...+.+. +..| +..+|..+..++...|+.++|...++++++++|++...|.
T Consensus 238 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 238 ---RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp ---CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ---CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 444 666777888888999999999998876 3445 4567788888999999999999999999999999989999
Q ss_pred HHHHHHHh
Q 005174 620 LIANMYAA 627 (710)
Q Consensus 620 ~l~~~~~~ 627 (710)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88887774
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=2.5e-07 Score=86.58 Aligned_cols=198 Identities=9% Similarity=-0.065 Sum_probs=115.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCC--C-ChhHHHHHHHHHH
Q 005174 413 TIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSR--R-DEVTYTSLIAGYG 489 (710)
Q Consensus 413 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 489 (710)
++..+-..+.+.|+++.|...|...++.. +.++.+++.+..+|.+.|++++|...|+++.+ | +..+|..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 34444456666677777777777766654 55667777777888888888888888877653 2 4567777788888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 490 IQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
..|++++|+..|++..+. .|+ ......+..++.+.+..+....+...... ..+....++ ++..+.........
T Consensus 117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHH
Confidence 888888888888887764 333 33333333334444444444444444332 223322222 22222222222211
Q ss_pred HH-HHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 569 KE-IITKMP----YTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 569 ~~-~~~~m~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
.. ...... ..| ...+|..+...+...|+++.|...++++++.+|++...|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 11 111111 112 233566677778888888888888888888888775444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.8e-08 Score=94.61 Aligned_cols=192 Identities=10% Similarity=-0.044 Sum_probs=137.4
Q ss_pred hHHHhHHhhhhhhcCChhHHHHHHhhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 005174 447 LLLWNSLVEMYARSGKVPEAKSVFDLMSR---RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSA 522 (710)
Q Consensus 447 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 522 (710)
..++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|...|++++|+..|++..+. .|+ ..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHH
Confidence 34677788899999999999999998763 47889999999999999999999999999984 454 5678888889
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH----hcCC
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPTSAMWATLLGACQ----IHRN 596 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~l~~~~~----~~g~ 596 (710)
+...|++++|...|+...+. .|+ ......+...+.+.+..+.+..+..... ..++...++ ++..+. ..+.
T Consensus 115 ~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHH
Confidence 99999999999999999875 555 4444445555566665555544444331 112211222 112221 1222
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.+.+...+.......|+....|..++.+|...|++++|.+.+++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 333333444444556666788999999999999999999999987653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=8e-09 Score=101.36 Aligned_cols=247 Identities=7% Similarity=-0.055 Sum_probs=175.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHH-H---HHHHH-------HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHh
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTI-A---SILPL-------CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLV 454 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 454 (710)
....+..++|+.++.+.++. .|+..+. . .++.. +...+.++++..+++.+++.. +.+...+..+.
T Consensus 39 ~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~ 114 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRC 114 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhh
Confidence 33334457888888887765 4554432 1 12222 233455788889999998875 66777777777
Q ss_pred hhhhhcC--ChhHHHHHHhhcCC---CChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCc
Q 005174 455 EMYARSG--KVPEAKSVFDLMSR---RDEVTYTS-LIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGL 528 (710)
Q Consensus 455 ~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 528 (710)
.++...+ ++++|...++++.+ ++...|.. ....+...+.+++|+..++++.+... -+...|..+...+...|+
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~ 193 (334)
T d1dcea1 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHP 193 (334)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcC
Confidence 7666655 47899999988753 35556544 44677788999999999999887532 256678888888888888
Q ss_pred HHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005174 529 VVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM--PYTPTSAMWATLLGACQIHRNTGIGEWAAEK 606 (710)
Q Consensus 529 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 606 (710)
+++|...++..... .|. ...+...+...+..+++...+... ..+++...+..+...+...|+.+.|...+..
T Consensus 194 ~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 194 QPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp CCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88776666555432 222 122334455667777777776655 2233455566677777888999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 607 LLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 607 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
..+.+|++...|..++.+|.+.|++++|.+.++...+
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.6e-07 Score=72.52 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCch
Q 005174 555 MVDLYGRAGLLNKAKEIITKM-P-YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWD 632 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 632 (710)
-.+.+.+.|++++|+..|++. . .+.+...|..+..++...|+++.|...++.+++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456677778888888877776 2 23366777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 005174 633 KLAKVRTCMRD 643 (710)
Q Consensus 633 ~A~~~~~~m~~ 643 (710)
+|.+.++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888777653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=9.8e-07 Score=70.50 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=88.1
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g 595 (710)
-...+...|++++|...|+...+. .|+ ...|..+..+|.+.|++++|+..+++.- .+.+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 345677888999999999988864 676 7788889999999999999999888772 3447888889999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
+++.|...++.+++++|+++..+..+.++-.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999888888777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.4e-06 Score=74.10 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=44.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchH
Q 005174 556 VDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDK 633 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 633 (710)
...|.+.|++++|+..|++.- .+.+...|..+...|...|+++.|...++++++++|++...|..++.+|...|++++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence 334445555555555555441 122444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 005174 634 LAKVRTCMR 642 (710)
Q Consensus 634 A~~~~~~m~ 642 (710)
|.+.++...
T Consensus 97 A~~~~~~a~ 105 (159)
T d1a17a_ 97 ALRDYETVV 105 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=6e-07 Score=80.15 Aligned_cols=116 Identities=7% Similarity=-0.140 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005174 511 PDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATL 587 (710)
Q Consensus 511 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 587 (710)
|+...+.-....+.+.|++++|...|+++... .|+ ...|..+..+|.+.|++++|+..|++. ...| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 56666666777777777777777777777654 555 666777777777777777777777766 3444 46677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 005174 588 LGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATG 629 (710)
Q Consensus 588 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 629 (710)
..++...|+++.|...++++++++|++...+...+..+...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 777777777777777777777777765555444444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=4.6e-06 Score=73.27 Aligned_cols=138 Identities=10% Similarity=-0.057 Sum_probs=79.9
Q ss_pred hhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHH
Q 005174 456 MYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQK 534 (710)
Q Consensus 456 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 534 (710)
.+...|+++.|.+.|.++..++...|..+..+|...|++++|++.|++.++. .| +...|..+..++.+.|++++|..
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 3455666666666666666666666666666666666666666666666653 23 34456666666666666666666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC
Q 005174 535 QFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPE 613 (710)
Q Consensus 535 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 613 (710)
.|++.... ..++... .|...| +..+.+ ..++..+..++...|+++.|.+.++.++++.|+
T Consensus 92 ~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 92 DLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66665542 1111000 000000 000111 234555666777888888888888888888776
Q ss_pred C
Q 005174 614 N 614 (710)
Q Consensus 614 ~ 614 (710)
.
T Consensus 153 ~ 153 (192)
T d1hh8a_ 153 P 153 (192)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.2e-06 Score=71.85 Aligned_cols=116 Identities=7% Similarity=-0.035 Sum_probs=94.4
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHR 595 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g 595 (710)
-...|.+.|++++|...|+++.+. .|+ ...|..+..+|...|++++|+..|++. ...| +..+|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 345677889999999999988874 677 788889999999999999999999887 2334 6678999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 005174 596 NTGIGEWAAEKLLETRPENSGYYVLIANMYA--ATGCWDKLAKV 637 (710)
Q Consensus 596 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 637 (710)
+++.|...++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999988888776644 44456666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.1e-06 Score=78.28 Aligned_cols=96 Identities=5% Similarity=-0.136 Sum_probs=75.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHH
Q 005174 476 RDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFAC 554 (710)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 554 (710)
|+...+......|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...|+.+.+ +.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 344555667788888888888988888887742 23466778888888888888888888888863 6787 778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 005174 555 MVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 555 li~~~~~~g~~~~A~~~~~~m 575 (710)
+..+|.+.|++++|+..|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=2.9e-06 Score=80.53 Aligned_cols=190 Identities=10% Similarity=-0.007 Sum_probs=126.7
Q ss_pred HhHHhhhhhhcCChhHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--ChHH
Q 005174 450 WNSLVEMYARSGKVPEAKSVFDLMSR-----RD----EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQI---KP--DHVT 515 (710)
Q Consensus 450 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t 515 (710)
|......|..+|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|+..+++..+.-. .+ ...+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 44445677788888888888876652 12 34788889999999999999999987665211 11 1335
Q ss_pred HHHHHHHhh-ccCcHHHHHHHHHHHHHHhC---CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------CH-
Q 005174 516 MVAVLSACS-HSGLVVEGQKQFERMTSIYG---IFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTP-------TS- 581 (710)
Q Consensus 516 ~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-------~~- 581 (710)
+..+...|. ..|++++|.+.+++..+.+. -.+. ..++..+...|.+.|++++|++.+++.. ..| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 556666664 46999999999998865422 1222 4568889999999999999999998862 111 11
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCch-----HHHHHHHHHh--cCCchHHHHHHH
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGY-----YVLIANMYAA--TGCWDKLAKVRT 639 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~ 639 (710)
..+...+..+...|+.+.|...++.+.+++|..+.+ ...++.++.. .+++++|.+.++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~ 264 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 223344455677899999999999999998864432 2344555554 356888877654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.30 E-value=1.2e-06 Score=69.38 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 553 ACMVDLYGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 553 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..+...+.+.|++++|+..|++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788899999999999887 2344 688899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 005174 631 WDKLAKVRTCM 641 (710)
Q Consensus 631 ~~~A~~~~~~m 641 (710)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.1e-06 Score=70.84 Aligned_cols=61 Identities=10% Similarity=-0.120 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+|+.+..+|.+.|+++.|...++.+++++|+++..|..++.+|...|++++|...++...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888888888888888888888888887664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.6e-06 Score=68.20 Aligned_cols=106 Identities=13% Similarity=-0.046 Sum_probs=84.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCH---HHHHHHHHhCC-CCCCH---HHHHHHH
Q 005174 517 VAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLL---NKAKEIITKMP-YTPTS---AMWATLL 588 (710)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~---~~A~~~~~~m~-~~p~~---~~~~~l~ 588 (710)
..+++.+...+++++|++.|++.... .|+ ..++..+..+|.+.++. ++|+.+++++- ..|+. .+|..|.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35677788889999999999999874 666 78888999999876544 56999998863 33433 3677888
Q ss_pred HHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 005174 589 GACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMY 625 (710)
Q Consensus 589 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 625 (710)
.+|...|+++.|...++++++++|++......+..+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999877665554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=3.1e-05 Score=67.72 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=80.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 005174 485 IAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAG 563 (710)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 563 (710)
...+...|++++|++.|.++ ..|+..+|..+..++...|++++|...|++..+. .|+ ...|..+..+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence 34456667777777766654 2455566666666667777777777777776653 555 556666666666666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCC----------------CCchHHHHHHHHHh
Q 005174 564 LLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPE----------------NSGYYVLIANMYAA 627 (710)
Q Consensus 564 ~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----------------~~~~~~~l~~~~~~ 627 (710)
++++|++.|++. ++..|. ....+..++.+|.+
T Consensus 85 ~~~~A~~~~~kA--------------------------------l~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~ 132 (192)
T d1hh8a_ 85 KYDLAIKDLKEA--------------------------------LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132 (192)
T ss_dssp CHHHHHHHHHHH--------------------------------HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--------------------------------HHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 666666665543 322221 13457789999999
Q ss_pred cCCchHHHHHHHHHHhCCC
Q 005174 628 TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 628 ~g~~~~A~~~~~~m~~~~~ 646 (710)
.|++++|.+.+........
T Consensus 133 ~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 133 KEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp TTCHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 9999999999887765433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.23 E-value=1.1e-05 Score=67.70 Aligned_cols=83 Identities=11% Similarity=-0.033 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeE
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVF 661 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 661 (710)
.++..+..+|.+.|+++.|...++.+++++|.+..+|..++.+|...|++++|...++....
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46667888899999999999999999999999999999999999999999999999888764
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 662 SPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 662 ~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
.+|+..++...+..+..++++
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHH
Confidence 457777888888888877765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=1e-05 Score=76.68 Aligned_cols=173 Identities=13% Similarity=-0.003 Sum_probs=130.7
Q ss_pred CChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHhhccCcHHHHHHH
Q 005174 461 GKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKN----QIKPD-HVTMVAVLSACSHSGLVVEGQKQ 535 (710)
Q Consensus 461 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 535 (710)
+++++|.++|.+ ....|...|++++|++.|.+..+. +-.++ ..+|..+..+|.+.|++++|...
T Consensus 31 ~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~ 99 (290)
T d1qqea_ 31 YKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (290)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 346777766554 577899999999999999998762 22222 34788889999999999999999
Q ss_pred HHHHHHHhCCCCC----hhHHHHHHHHHHh-cCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHH
Q 005174 536 FERMTSIYGIFPQ----LEHFACMVDLYGR-AGLLNKAKEIITKMP----YTPT----SAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 536 ~~~~~~~~~~~p~----~~~~~~li~~~~~-~g~~~~A~~~~~~m~----~~p~----~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
++.....+.-..+ ..++..+...|.. .|++++|++.+++.. ...+ ..++..+...+...|+++.|..
T Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~ 179 (290)
T d1qqea_ 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence 9987654322222 4556677777754 699999999998762 1111 3457778888999999999999
Q ss_pred HHHHHHhhCCCCC-------chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 603 AAEKLLETRPENS-------GYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 603 ~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
.++++....|.+. ..+...+.++...|+++.|.+.+....+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999988764 24567777888999999999988876643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.4e-06 Score=68.36 Aligned_cols=113 Identities=13% Similarity=0.026 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhhCCCC--CchHHHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHR---NTGIGEWAAEKLLETRPEN--SGYYVLIANM 624 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 624 (710)
...+++.+...+++++|.+.|++.- .+.+..++..+..++.+.+ +.+.|...++.+++.+|.+ ..++..||.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4567888999999999999999873 3457788888888887644 5556888888888888754 4578999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHHH
Q 005174 625 YAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMKD 690 (710)
Q Consensus 625 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~~ 690 (710)
|.+.|++++|.+.+++..+ .+|+..+...++..+...+++
T Consensus 82 y~~~g~~~~A~~~~~~aL~--------------------------~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999875 456666777777777776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=9.9e-06 Score=69.51 Aligned_cols=84 Identities=11% Similarity=-0.040 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEEEECC
Q 005174 580 TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWVDAGN 659 (710)
Q Consensus 580 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 659 (710)
+...|..+..++.+.|+++.|...++.+++++|+++..|..++.+|.+.|++++|.+.++...+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~---------------- 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---------------- 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 4456777778888999999999999999999999999999999999999999999999888775
Q ss_pred eEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 660 VFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 660 ~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
..|+...++..|..+...++
T Consensus 140 ----------l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 140 ----------IAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHHH
T ss_pred ----------hCCCCHHHHHHHHHHHHHHH
Confidence 34556677777776666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.9e-05 Score=67.55 Aligned_cols=133 Identities=12% Similarity=-0.020 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLY 559 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 559 (710)
.+......+.+.|++++|+..|++.++. -|.. .+....-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 4455566777888888888888877652 1110 000000001111111 23577788999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 560 GRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 560 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++.+++++|+++.....+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877 2344 7888999999999999999999999999999999999999999988777665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.9e-05 Score=63.86 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG-------YYVLIA 622 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 622 (710)
+..+.+.|.+.|++++|++.|++.- .+.+..+|..+..+|...|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456778888899999998888762 2346788888999999999999999999999999888765 456677
Q ss_pred HHHHhcCCchHHHHHHHHHH
Q 005174 623 NMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 623 ~~~~~~g~~~~A~~~~~~m~ 642 (710)
.++...+++++|.+.+....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 78888899999999887654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.9e-06 Score=88.75 Aligned_cols=206 Identities=9% Similarity=-0.025 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHHHC
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTS-LIAGYGIQGEGRVALKLFEEMNKN 507 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 507 (710)
+|.+.++++.+.. +.....+..+..+|...|++++| |+++...|+..... -+....-...+..+++.++...+.
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555432 22344456666777777777765 44443222211000 011111111245567777777665
Q ss_pred CCCCChHHHHHHHHHh--hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHH
Q 005174 508 QIKPDHVTMVAVLSAC--SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPT-SAM 583 (710)
Q Consensus 508 g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~ 583 (710)
.-.++..-....+..+ ...+.++.+...++.. +++.|+ ...+..+...+.+.|+.++|...+++.- .++ ..+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~---~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~ 154 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTV---FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHC 154 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHH-HHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHH
Confidence 4445544333222222 1223444444443332 356666 6677888888999999999887665542 121 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 584 WATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 584 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+..+...++..|+++.|...++++.+++|++...|..||.+|...|+..+|...+.+...
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999999999999999999999988877653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=5.5e-05 Score=64.52 Aligned_cols=61 Identities=8% Similarity=-0.097 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRD 643 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 643 (710)
+|..+..++...|+++.|...++.+++++|++...|..++.+|...|++++|.+.++....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566677788888888888888888888888888888888888888888888777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.00087 Score=61.74 Aligned_cols=227 Identities=11% Similarity=-0.050 Sum_probs=129.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCCchHHH
Q 005174 375 SIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCAR----VANLQHGKEFHCYILRRAMFNEHLLLW 450 (710)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 450 (710)
|+..+..+...+.+.+++++|++.|++..+.| +...+..+-..+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34456666666677777777777777777665 22232223223322 223444444444433333
Q ss_pred hHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHH--hh
Q 005174 451 NSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGI----QGEGRVALKLFEEMNKNQIKPDHVTMVAVLSA--CS 524 (710)
Q Consensus 451 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~ 524 (710)
+...+..+...+.. ..+.+.|...+++..+.|....... ...... ..
T Consensus 69 --------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~ 121 (265)
T d1ouva_ 69 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKV 121 (265)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSS
T ss_pred --------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCc
Confidence 23333333333322 3456777777777766553222111 111111 12
Q ss_pred ccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005174 525 HSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNKAKEIITKMPYTPTSAMWATLLGACQI----HRN 596 (710)
Q Consensus 525 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~g~ 596 (710)
.......+...+..... ..+...+..|...|.. ..+...+...++......+...+..|...+.. ..|
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23455666666665543 2345566667666664 44666677777665434466666666655554 568
Q ss_pred hHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 005174 597 TGIGEWAAEKLLETRPENSGYYVLIANMYAA----TGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 597 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 646 (710)
.+.|...++++.+.+ ++..+..|+.+|.+ ..+.++|.+.+++..+.|-
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888888887774 56788889998875 3378889998888766554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=8.1e-05 Score=63.41 Aligned_cols=92 Identities=16% Similarity=0.014 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKMP--YTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAAT 628 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 628 (710)
.|..+..+|.+.|++++|+..+++.- .+.+..+|..+..++...|+++.|...++.+++++|+++.++..+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46778889999999999999998872 3457888999999999999999999999999999999999999999998877
Q ss_pred CCchH-HHHHHHHHH
Q 005174 629 GCWDK-LAKVRTCMR 642 (710)
Q Consensus 629 g~~~~-A~~~~~~m~ 642 (710)
+...+ ..+++..|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 76543 455555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=4.1e-05 Score=65.48 Aligned_cols=133 Identities=9% Similarity=0.006 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHH
Q 005174 480 TYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDL 558 (710)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 558 (710)
.+......+...|++++|+..|.+.++. +..........+. ..+.|. ...|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHH
Confidence 3455666777888888888888876531 0000000001000 012343 5568888999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHH
Q 005174 559 YGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKL 634 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 634 (710)
|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++++++++|++...+..+..+..+.....++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3344 6789999999999999999999999999999999999888888887665544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.79 E-value=0.0002 Score=59.75 Aligned_cols=127 Identities=9% Similarity=-0.133 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 005174 479 VTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDL 558 (710)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 558 (710)
..+......+.+.|++.+|+..|++.... -|.. ....-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 45666777888889999999988887763 1110 00000000000000 112467788999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 005174 559 YGRAGLLNKAKEIITKM-PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYA 626 (710)
Q Consensus 559 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 626 (710)
|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...++.+++++|+++.....+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999886 3334 78899999999999999999999999999999999888777666544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.79 E-value=9.6e-05 Score=57.85 Aligned_cols=86 Identities=9% Similarity=-0.074 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHh
Q 005174 484 LIAGYGIQGEGRVALKLFEEMNKNQIKP-DHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGR 561 (710)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 561 (710)
+...+.+.|++++|+..|++..+. .| +...|..+..++.+.|++++|...|++..+. .|+ ...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---DPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc---ccccccchHHHHHHHHH
Confidence 455566667777777777776663 34 3556666666677777777777777776653 555 6666677777777
Q ss_pred cCCHHHHHHHHHh
Q 005174 562 AGLLNKAKEIITK 574 (710)
Q Consensus 562 ~g~~~~A~~~~~~ 574 (710)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7777777766664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.0047 Score=58.05 Aligned_cols=129 Identities=14% Similarity=0.049 Sum_probs=49.1
Q ss_pred HHHHHHhcccCchHhHHHHHHHHHHhCCCCCCchhhHHHHHHHccCChhHHHHhHhhCCCCCCccHHHHHHHHHhCCCch
Q 005174 78 AHIIFCCGKVKALAQGKQLHACAIALGLEKNPVLVPKLVTFYASFSLYNNACFLVENSNIRYPLPWNLLISLYVRDGFYA 157 (710)
Q Consensus 78 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 157 (710)
..+..-|.+.|.++.|..++..+ .-+..++..|.+.++++.|.+.+.+.. +..+|..+...+.+.....
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHH
Confidence 33444444444444444444321 123344444444455555444444322 2234444444444444332
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHcccCCchHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 005174 158 EALCVYKQMQSRRIRGDNFTYPSVLKACGEMMDVDFGRVVHSCIDACHEWSLFVHNALVSMYGKF 222 (710)
Q Consensus 158 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~li~~~~~~ 222 (710)
.| .+...+...++.....++..|-..|.++....+++.....-+.+...++-++..|++.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 22 1111222223333444444454445444444444443322233444455555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.017 Score=54.05 Aligned_cols=207 Identities=10% Similarity=0.028 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchH
Q 005174 349 NALITMYSRCKDLRHAYILFKMTAEKSIITWNSMLSGYTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQ 428 (710)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 428 (710)
..++..|.+.++++.|.+++.+.. +..+|..+...+.+.....-+ .+...+...+......++..|...|..+
T Consensus 44 ~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 44 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChH
Confidence 455566666677777666665442 445666666666666554332 2223334445555566777777777777
Q ss_pred HHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCC-----------ChhHHHHHHHHHHhcCChHHH
Q 005174 429 HGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRR-----------DEVTYTSLIAGYGIQGEGRVA 497 (710)
Q Consensus 429 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A 497 (710)
....++...... -..+..+++.++..|++.+. ++-.+.+...... ....|.-++-.|.+.|++++|
T Consensus 117 ~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A 193 (336)
T d1b89a_ 117 ELITMLEAALGL--ERAHMGMFTELAILYSKFKP-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 193 (336)
T ss_dssp HHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcC--CccchHHHHHHHHHHHHhCh-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHH
Confidence 777777766533 24566677777777777643 3444444433221 112344555555666666665
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 005174 498 LKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKM 575 (710)
Q Consensus 498 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 575 (710)
+.+. .+ -.++..-....+..+.+.++.+...++.....+. .|+ ..+.++......-+..+..+.+++-
T Consensus 194 ~~~~---i~--~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 194 IITM---MN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp HHHH---HH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHH---HH--cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHhc
Confidence 5442 22 1233333344455566666666666655555442 343 3455666666666666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.68 E-value=0.0026 Score=58.33 Aligned_cols=92 Identities=12% Similarity=-0.011 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH-
Q 005174 347 VRNALITMYSRCKDLRHAYILFKMTAE-KSIITWNSMLSGYTH----LDCAEESAFLFREMFRSGVEPNYVTIASILPL- 420 (710)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~- 420 (710)
.+..|...+.+.+++++|.+.|++..+ .+..++..|...|.. ..+...|...+......+. |.. ...+...
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~~a--~~~l~~~~ 80 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-SNG--CHLLGNLY 80 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-cch--hhcccccc
Confidence 344555566666777777777776543 355555555555554 4566777777777666552 221 1111111
Q ss_pred ---HhccCchHHHHHHHHHHHHhC
Q 005174 421 ---CARVANLQHGKEFHCYILRRA 441 (710)
Q Consensus 421 ---~~~~~~~~~a~~~~~~~~~~~ 441 (710)
+....+.+.+...+....+.|
T Consensus 81 ~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 81 YSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccchhhHHHHHHHhhhhhhh
Confidence 222345566666666666655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=8.4e-05 Score=61.34 Aligned_cols=95 Identities=12% Similarity=0.032 Sum_probs=65.6
Q ss_pred hccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005174 524 SHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEW 602 (710)
Q Consensus 524 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~ 602 (710)
.+.+.+++|...|+...+. .|+ ...+..+..+|...+++..+.+ ..+.++.|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHH
Confidence 3445566666666666653 555 5566666666655544443332 1244567999
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCC-----------chHHHHHHHHHHh
Q 005174 603 AAEKLLETRPENSGYYVLIANMYAATGC-----------WDKLAKVRTCMRD 643 (710)
Q Consensus 603 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 643 (710)
.++++++++|+++..|..++.+|...|+ +++|.+.+++..+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 9999999999999999999999988764 5777777776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.47 E-value=9.8e-05 Score=60.92 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=79.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhcc----------CcHHHHHHHHHHHHHHhCCCCC-hhHHHHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHS----------GLVVEGQKQFERMTSIYGIFPQ-LEHFACM 555 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 555 (710)
|-+.+.+++|+..|++..+. .|+ ...+..+..+|... +.+++|...|+++.+ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 55677899999999999984 454 55677777666543 445778888888775 4676 6777777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 005174 556 VDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGC 630 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 630 (710)
..+|...|++. ++... ..++++.|...++++++++|++...+..|+......+.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~ 135 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 135 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence 77776654321 11111 11245778999999999999998777777666533333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.00046 Score=58.96 Aligned_cols=112 Identities=5% Similarity=-0.072 Sum_probs=80.0
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 005174 519 VLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKAKEIITKMPYTPTSAMWATLLGACQIHRNTG 598 (710)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~ 598 (710)
........|++++|.+.|...... .+....- -+...........-++. -....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~-----~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALRE---WRGPVLD-----DLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG-----GGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc-----cCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 334667889999999999888754 3321100 00000001111111111 12456778889999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005174 599 IGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMR 642 (710)
Q Consensus 599 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 642 (710)
.|...++.+++++|.+...|..++.+|.+.|++++|++.++.+.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.38 E-value=0.0004 Score=58.01 Aligned_cols=63 Identities=14% Similarity=-0.092 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 005174 582 AMWATLLGACQIHRNTGIGEWAAEKLLETRPEN-----------SGYYVLIANMYAATGCWDKLAKVRTCMRDL 644 (710)
Q Consensus 582 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 644 (710)
..|+.+..++...|+++.|...++..+++.|.. ...|..++.+|...|++++|.+.+++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777788887777777777664321 235788999999999999999999987653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0004 Score=52.17 Aligned_cols=81 Identities=14% Similarity=-0.034 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCCeeEE
Q 005174 583 MWATLLGACQIHRNTGIGEWAAEKLLETRPEN-------SGYYVLIANMYAATGCWDKLAKVRTCMRDLGVRKIPGCAWV 655 (710)
Q Consensus 583 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 655 (710)
.+-.+...+...|+++.|...+++++++.|.+ ..+|..|+.+|.+.|++++|.+.+++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~------------ 74 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------------ 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH------------
Confidence 34467788889999999999999999886554 35688999999999999999999999875
Q ss_pred EECCeEEEEeeCCCCCcchhhHHHHHHHHHHHHH
Q 005174 656 DAGNVFSPFLVDDTSNVQAQEIYPLLGGLTELMK 689 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~l~~~~~ 689 (710)
.+|+..+++..+..+.+.|.
T Consensus 75 --------------l~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 75 --------------LDPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHH
T ss_pred --------------hCcCCHHHHHHHHHHHHHhC
Confidence 35677778888877777664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0011 Score=52.87 Aligned_cols=93 Identities=11% Similarity=0.030 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-----hhHHHHH
Q 005174 481 YTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-----LEHFACM 555 (710)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l 555 (710)
+..+...|.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...++++.+...-.+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445556666666666666666666532 123445555666666666666666666665542100011 1233444
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 005174 556 VDLYGRAGLLNKAKEIITK 574 (710)
Q Consensus 556 i~~~~~~g~~~~A~~~~~~ 574 (710)
...+...+++++|++.|++
T Consensus 86 g~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4444445555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00062 Score=51.05 Aligned_cols=73 Identities=12% Similarity=-0.041 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 552 FACMVDLYGRAGLLNKAKEIITKM----P----YTPT-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 552 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+..+...+.+.|++++|+..|++. + ..++ ..+++.|..++.+.|+++.|...++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345666777777777777666654 1 1222 567888999999999999999999999999999988887775
Q ss_pred HH
Q 005174 623 NM 624 (710)
Q Consensus 623 ~~ 624 (710)
..
T Consensus 88 ~~ 89 (95)
T d1tjca_ 88 YF 89 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=4e-05 Score=78.49 Aligned_cols=165 Identities=8% Similarity=-0.044 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHH
Q 005174 392 AEESAFLFREMFRSGVEPNYVTIASILPL--CARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSV 469 (710)
Q Consensus 392 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 469 (710)
+..+.+.++...+....++..-....+.. ....+.++.+...+....+.. +++...+..+...+.+.|+.++|...
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~--~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD--LPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--hhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 34555666665554433333222222211 122334444444444333322 44566677788888888888888877
Q ss_pred HhhcCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCC
Q 005174 470 FDLMSRRD-EVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPD-HVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFP 547 (710)
Q Consensus 470 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 547 (710)
+....+++ ..++..+...+...|++++|+..|++..+. .|+ ...|+.+...+...|+..+|...|.+... +.|
T Consensus 143 ~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~---~~~ 217 (497)
T d1ya0a1 143 QSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA---VKF 217 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS---SSB
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC
Confidence 66554433 246777888899999999999999998874 555 56888898889999999999999988875 445
Q ss_pred C-hhHHHHHHHHHHhcC
Q 005174 548 Q-LEHFACMVDLYGRAG 563 (710)
Q Consensus 548 ~-~~~~~~li~~~~~~g 563 (710)
+ ...+..|...|.+..
T Consensus 218 ~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 218 PFPAASTNLQKALSKAL 234 (497)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 5 778888888876544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.21 E-value=0.00049 Score=62.90 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHH
Q 005174 488 YGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLN 566 (710)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 566 (710)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346788999999999988852 235678888888899999999999999988764 777 556666666665555555
Q ss_pred HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchH
Q 005174 567 KAKEIITKM--PYTP-TSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYY 618 (710)
Q Consensus 567 ~A~~~~~~m--~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 618 (710)
++..-.... ...| +...+......+...|+.+.|...++.+.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 543332221 1223 233334444667788999999999999999998876654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.0044 Score=52.55 Aligned_cols=121 Identities=10% Similarity=0.019 Sum_probs=79.6
Q ss_pred HHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhHHHHHHhhcCCCChhHHHHHHHHHHhcCChHHHH
Q 005174 419 PLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPEAKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVAL 498 (710)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 498 (710)
......|+++.|.+.+...+....-.+ +......+.+...-..+.......+..+...+...|++++|+
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~-----------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPV-----------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSST-----------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccc-----------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 355677888888888887776421010 000011111111112222223456778888999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHH----HhCCCCChhH
Q 005174 499 KLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTS----IYGIFPQLEH 551 (710)
Q Consensus 499 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 551 (710)
..++++.+.. +-+...|..++.+|...|+..+|.+.|+++.. ..|+.|+..+
T Consensus 88 ~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999998742 23677889999999999999999999888744 3588888654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0046 Score=51.22 Aligned_cols=64 Identities=11% Similarity=-0.067 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCC
Q 005174 551 HFACMVDLYGRAGLLNKAKEIITKM--------PYTPT-----SAMWATLLGACQIHRNTGIGEWAAEKLLETRPEN 614 (710)
Q Consensus 551 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 614 (710)
.|+.+..+|.+.|++++|++.+++. ...++ ...+..+..+|...|+++.|...+++++++.|+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 4555566666666666665555543 11121 1245566777888888888888888888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.66 E-value=0.00067 Score=61.99 Aligned_cols=121 Identities=10% Similarity=0.051 Sum_probs=85.2
Q ss_pred hhccCcHHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHH
Q 005174 523 CSHSGLVVEGQKQFERMTSIYGIFPQ-LEHFACMVDLYGRAGLLNKAKEIITKMP-YTPT-SAMWATLLGACQIHRNTGI 599 (710)
Q Consensus 523 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~l~~~~~~~g~~~~ 599 (710)
..+.|++++|...+++..+. .|+ ...+..+..+|+..|++++|.+.++... ..|+ ...+..+...+...+..+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 34679999999999999874 787 8999999999999999999999999873 4454 4555555555443333222
Q ss_pred HHHHHHHHH-hhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 005174 600 GEWAAEKLL-ETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGV 646 (710)
Q Consensus 600 a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 646 (710)
+........ ..+|++...+...+.++.+.|+.++|.+.+....+...
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 211111111 11344455566778889999999999999998876543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=2.9 Score=40.41 Aligned_cols=115 Identities=9% Similarity=0.006 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHCC-CCCChH-HHH-HHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 492 GEGRVALKLFEEMNKNQ-IKPDHV-TMV-AVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g-~~p~~~-t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
.+.+.|..++....... ..++.. ... .+.......+..+.+..++...... ..+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 46677777777765532 222211 111 1222233445566676666655442 23333333444455667788888
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005174 569 KEIITKMPYTPT--SAMWATLLGACQIHRNTGIGEWAAEKLLE 609 (710)
Q Consensus 569 ~~~~~~m~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 609 (710)
...++.|+..|. ..-.--+..+....|+.+.|...+..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888888763331 22223456677777888777777777653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.24 Score=37.69 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHHhCC-CCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCc
Q 005174 547 PQLEHFACMVDLYGRAG---LLNKAKEIITKMP-YTP-T-SAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSG 616 (710)
Q Consensus 547 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 616 (710)
|+..+-.....++.+.. +.++++.++++.- ..| + ...|..|.-+|.+.|+++.|.+.++.+++++|++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 45556666677777654 4456777776652 223 3 246666777778888888888888888888887643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.30 E-value=0.56 Score=36.54 Aligned_cols=47 Identities=11% Similarity=-0.039 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhc----cCcHHHHHHHHHHHHH
Q 005174 492 GEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSH----SGLVVEGQKQFERMTS 541 (710)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 541 (710)
.+.++|+++|++..+.|. ......|...|.+ ..+.++|.++|+...+
T Consensus 73 ~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 355666666666666542 2222333333332 3456666666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.88 E-value=1.4 Score=34.13 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGR----AGLLNKA 568 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 568 (710)
++++|+++|++..+.|.. .....+. .....+.++|.+++++..+. | +......|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 566677777776665522 2222222 23344566666666665442 2 23334444444432 2344555
Q ss_pred HHHHHhC
Q 005174 569 KEIITKM 575 (710)
Q Consensus 569 ~~~~~~m 575 (710)
.+.|++.
T Consensus 79 ~~~~~~a 85 (133)
T d1klxa_ 79 AQYYSKA 85 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 5555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=0.8 Score=34.71 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 005174 527 GLVVEGQKQFERMTSIYGIFPQ--LEHFACMVDLYGRAGLLNKAKEIITKM-PYTPT 580 (710)
Q Consensus 527 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 580 (710)
.++++|..+++.+... .|. .+.+..|.-+|.+.|++++|.+.++.+ ...|+
T Consensus 52 ~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 52 NDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556777777777653 343 356666777778888888888877776 23443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.57 E-value=6.2 Score=37.86 Aligned_cols=55 Identities=13% Similarity=-0.077 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 005174 214 ALVSMYGKFGQVDVARRLFDKMLERDAVSWNTMISAYASKGLWKEAFQLFVEMQEE 269 (710)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 269 (710)
..+..+.+.+++......+..-+ .+...-.....+....|+..+|...+...-..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 34455566677666555443322 23444445556666677777777666665443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.55 E-value=2 Score=32.18 Aligned_cols=141 Identities=11% Similarity=-0.021 Sum_probs=90.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCCchHHHhHHhhhhhhcCChhH
Q 005174 386 YTHLDCAEESAFLFREMFRSGVEPNYVTIASILPLCARVANLQHGKEFHCYILRRAMFNEHLLLWNSLVEMYARSGKVPE 465 (710)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 465 (710)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. | -..+|+++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~--F------------Dls~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--F------------DLDKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--S------------CGGGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh--c------------CchhhhcHHH
Confidence 34457777777777776654 24455555554444433433333333322211 0 1235666666
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCC
Q 005174 466 AKSVFDLMSRRDEVTYTSLIAGYGIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGI 545 (710)
Q Consensus 466 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 545 (710)
....+-.+-. +...++..++.+.+.|+-+.-.++++++.+. -+|++.....+..||.+.|...++.+++.++-++ |+
T Consensus 75 vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 75 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 6666655443 3345566778888889988888898887764 4778888888889999999999999998888776 55
Q ss_pred C
Q 005174 546 F 546 (710)
Q Consensus 546 ~ 546 (710)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.19 E-value=2.8 Score=31.43 Aligned_cols=140 Identities=13% Similarity=0.022 Sum_probs=79.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 005174 489 GIQGEGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVDLYGRAGLLNKA 568 (710)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 568 (710)
...|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-|.+. .++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHH
Confidence 4456667777777766542 233444544443334444444455555543332222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 005174 569 KEIITKMPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIANMYAATGCWDKLAKVRTCMRDLGVR 647 (710)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 647 (710)
..-+-.+. .+....+--+.....+|.-+.-+..++.+++-+.-+|+....++++|.+.|.-.++-+++.+.-+.|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333332 233344445566667777666666766666655556778888888888888888888888877777763
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.78 E-value=3.1 Score=29.45 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHhhccCcHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 005174 493 EGRVALKLFEEMNKNQIKPDHVTMVAVLSACSHSGLVVEGQKQFERMTSIYGIFPQLEHFACMVD 557 (710)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 557 (710)
+.-++.+-++.+....+-|++....+.+.||.+.+++..|.++++.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44566677777777788999999999999999999999999999998876 3344556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.12 E-value=4.9 Score=28.46 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhhCCCCCchHHHHH
Q 005174 575 MPYTPTSAMWATLLGACQIHRNTGIGEWAAEKLLETRPENSGYYVLIA 622 (710)
Q Consensus 575 m~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 622 (710)
+...|++.+..+-+.||++-+|+..|.+.++-+....-.+.+.|-.+.
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356789999999999999999999999999988866544455665543
|