Citrus Sinensis ID: 005178
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS25 | 711 | Pentatricopeptide repeat- | yes | no | 0.992 | 0.991 | 0.719 | 0.0 | |
| Q8GWE0 | 702 | Pentatricopeptide repeat- | no | no | 0.854 | 0.864 | 0.386 | 1e-128 | |
| Q8GYP6 | 860 | Pentatricopeptide repeat- | no | no | 0.909 | 0.751 | 0.229 | 4e-47 | |
| Q9SSF9 | 855 | Pentatricopeptide repeat- | no | no | 0.676 | 0.561 | 0.239 | 2e-43 | |
| Q9FLD8 | 678 | Pentatricopeptide repeat- | no | no | 0.578 | 0.606 | 0.262 | 1e-36 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.443 | 0.384 | 0.280 | 2e-34 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.733 | 0.567 | 0.231 | 2e-33 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.461 | 0.399 | 0.273 | 5e-32 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.467 | 0.436 | 0.261 | 2e-31 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.449 | 0.525 | 0.270 | 3e-31 |
| >sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/714 (71%), Positives = 610/714 (85%), Gaps = 9/714 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
MA L+TA+DV + SDTK+ KP+ R+S K+NISC+S E P
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEP-IT 59
Query: 59 TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
TKT SLSEQLKPLS+TTL + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60 TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
P+++DL+ FA KLN TE++ FL + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWV 176
Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
KS++LFPMETIFYNVTMKSLRFGRQFQLIE++A EMV + +ELDNITYSTIITCAKRCNL
Sbjct: 177 KSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+++AIEWFERMYKTGLMPDEVTYSAILDVY+KSGKVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
LTP+EKTLTAL+KIYGKARWA+DAL+LWE M+ KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
RLF DMK S C+PDN+SYTAMLNIYGSGG + A+ELFEEM + GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
LGKA+RIDD+V VF +SI RGVKPDDRLCGCLLSV++LCE+SED KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536
Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
F+NLI D T +E +KEEF+ VI T+V+ARRPFCNCLIDICR N +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGT 596
Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTG 656
Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
TH+FSQGLA +FA H+ +L+APFRQS+ + G FVAT+EDLVSW++++ P +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RPGIFVATKEDLVSWLESKFPPLVTS 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/618 (38%), Positives = 371/618 (60%), Gaps = 11/618 (1%)
Query: 93 TWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQP 152
WVNP PR S L R+K SY+ R L A L+ C E IT +
Sbjct: 88 VWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDVITGFGGKL 140
Query: 153 TRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212
++A++ LN++ + + N + E I YNVTMK R + + E+L +E
Sbjct: 141 FEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLEKSEKLFDE 200
Query: 213 MVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272
M+ I+ DN T++TII+CA++ + A+EWFE+M G PD VT +A++D Y ++G
Sbjct: 201 MLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMIDAYGRAGN 260
Query: 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332
V+ LSLY+R W+ D + FS L +++G SG+YDG + +EMK+LGV+PNLV+YN
Sbjct: 261 VDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNR 320
Query: 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392
L+++MG+A +P A+ ++ +++ +G TP+ T AL++ YG+AR+ DAL ++ M+E
Sbjct: 321 LIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKG 380
Query: 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452
+ ILYNTLL+MCAD V+EA +F+DMK + C PD++++++++ +Y G V A
Sbjct: 381 LSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEA 440
Query: 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
+M E G + T +IQC GKA+++DD+VR F ++ G+ PDDR CGCLL+V
Sbjct: 441 EAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNV 500
Query: 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKDTEVDARRP 571
++ SE++GK+I C+++A PKL + ++ + E + K+E +I D ++
Sbjct: 501 MTQ-TPSEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKA 559
Query: 572 FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEE 631
+ NCLID+C N N ERA E+L LG Y +Y GL +K+ +WSL ++SLS+GAA TAL
Sbjct: 560 YLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHV 619
Query: 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFRQSEGKAGC 689
WM L++ L E P L TG G HK+S +GLA F SH+ +L APF ++ K G
Sbjct: 620 WMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGW 679
Query: 690 FVATREDLVSWVQARPSS 707
F+ T +W+++R S+
Sbjct: 680 FLTTSVAAKAWLESRRSA 697
|
Involved in chloroplast RNA processing. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 167/729 (22%), Positives = 299/729 (41%), Gaps = 83/729 (11%)
Query: 13 LSIPKS---DTKRPIFLTKPT-----RRSHPIKINISCNSKSSENVAAESPNP------E 58
+PKS D RPI K + RR H KI +K S +P+ E
Sbjct: 164 FGLPKSCMVDPTRPISSVKSSNVKAIRREHFAKIYPRSAAKESSVGTTRNPSSNFRGAKE 223
Query: 59 TKTLSLSEQLKPLSSTTLS---PTKND----RTPLLSKPK--STWVNPTKPRRSVLSLQR 109
+ + + +S++ + PT N+ RT +L +P S P+ S + + +
Sbjct: 224 AERTGFVKGFRQVSNSVVGKSLPTTNNTYGKRTSVLQRPHIDSNRFVPSGFSNSSVEMMK 283
Query: 110 QKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALL---------- 159
T L +R+ + + E + P E AL
Sbjct: 284 GPSGT----------ALTSRQYCNSGHIVENVSSVLRRFRWGPAAEEALQNLGLRIDAYQ 333
Query: 160 ---ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216
+L + + + FF W+K Q F + Y + +L +QF I +L +EMV +
Sbjct: 334 ANQVLKQMNDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRD 393
Query: 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276
+ + +TY+ +I R N +EA+ F +M + G PD VTY ++D++AK+G ++
Sbjct: 394 GCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIA 453
Query: 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336
+ +Y+R A G PD +SV+ G++G + EM G PNLV YN +++
Sbjct: 454 MDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDL 513
Query: 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396
KA A L+ +M +G PD+ T + ++++ G + ++A ++ M++ W D
Sbjct: 514 HAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPD 573
Query: 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456
+Y L+++ G VE+A + ++ M L +P+ + ++L+ + + A EL
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAM-LHAGLRPNVPTCNSLLSTFLRVNKIAEAYELL 632
Query: 457 EEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
+ M LG+ ++ T L+ C R K D CG L++
Sbjct: 633 QNMLALGLRPSLQTYTLLLSCCTDGRS----------------KLDMGFCGQLMA----- 671
Query: 517 ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCL 576
T + + A P + N F +++ + +++R + +
Sbjct: 672 STGHPAHMFLLKMPAAGP-----------DGENVRNHANNFLDLMHSEDRESKRGLVDAV 720
Query: 577 IDICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
+D E A + + ++P L K+ W +++ +S G A TAL +
Sbjct: 721 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 780
Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVA 692
K +L P TG G G + A +N +PF G +GCFV
Sbjct: 781 FRKQMLASGTCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVG 840
Query: 693 TREDLVSWV 701
+ E L W+
Sbjct: 841 SGEPLNRWL 849
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/488 (23%), Positives = 225/488 (46%), Gaps = 8/488 (1%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D TY+T++ R F E + + M + G P+ VTY+ ++ Y ++ ++E ++++
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+ +G +PD + + L + ++G D + Q M+ G+ P+ Y+ ++ +GKA
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A LF EMV G TP+ T +I ++ KAR + AL+L+ M+ + D + Y
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
+ ++ + G +EEAE +F +M+ ++ PD Y +++++G GNVD A + ++ M
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKAWQWYQAML 596
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520
+ G+ NV C L+ + R+ + + + G+ P + LLS + ++
Sbjct: 597 QAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNF 656
Query: 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE---FRNVIKDTEVDARRPFCNCLI 577
D+G + + FL + + +++ F + + + +++R + ++
Sbjct: 657 DMGFCGQLMAVSGHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVV 716
Query: 578 DICRNRNLNERAHELLYLGTLYGLYP-GLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTL 636
D L E A + + +YP L K+ W +++ +S G A AL +
Sbjct: 717 DFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWF 776
Query: 637 AKIVLREEVLPQLFLAETGTGTHKFSQGLA---TAFASHVNKLAAPFRQSEGKAGCFVAT 693
K +L P TG G G + A +N PF G +GCFV +
Sbjct: 777 RKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGS 836
Query: 694 REDLVSWV 701
E L +W+
Sbjct: 837 GEPLKNWL 844
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 198/416 (47%), Gaps = 5/416 (1%)
Query: 96 NPTKPRRSVLSLQRQKRSTY-SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR 154
N T +++ +R +RS + +N D+ ++ N +E F T Q +
Sbjct: 66 NTTSSFQALRKHRRYQRSAFLDHNV---DMDELLASIHQTQNEKELFSLLSTYKDRQLSI 122
Query: 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214
+ +L+ WQ+S +W+ + + YNV ++++ +QF + L +EM
Sbjct: 123 RFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMR 182
Query: 215 SNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
+ D TYST+IT + +FD A+ W ++M + + D V YS ++++ +
Sbjct: 183 QRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYS 242
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
+ +S++ R SG PD +A++ + ++G++ + R +++EM GV PN V Y+TLL
Sbjct: 243 KAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLL 302
Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
+ K A S+F EM E D T +I +YG+ K+A L+ +R+
Sbjct: 303 SVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIE 362
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+ + YNT+L + + L EA LF M+ D + + +Y M+ IYG + A
Sbjct: 363 PNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD-IEQNVVTYNTMIKIYGKTMEHEKATN 421
Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
L +EM G+ N + + +I GKA ++D +F GV+ D L ++
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 159/317 (50%), Gaps = 2/317 (0%)
Query: 188 IFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
I YNV + + G + I L +M S+ I D TY+T+ITC KR +L EA + FE
Sbjct: 244 ITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M G D+VTY+A+LDVY KS + +E + + V +G+ P + ++ L + G
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDG 363
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
D + +M G +P++ Y TLL +AGK A S+F+EM +G P+ T
Sbjct: 364 MLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFN 423
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
A IK+YG + +++++ + D + +NTLL + G+ E +F++MK +
Sbjct: 424 AFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483
Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
+ P+ ++ +++ Y G+ + A+ ++ M + GV ++ ++ L + +
Sbjct: 484 GFV-PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQ 542
Query: 487 LVRVFGVSIDRGVKPDD 503
+V D KP++
Sbjct: 543 SEKVLAEMEDGRCKPNE 559
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/558 (23%), Positives = 245/558 (43%), Gaps = 37/558 (6%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCA 232
FF+ ++ + P + I +N + G ++ L +EM + IE D +Y+T++
Sbjct: 326 FFDEMQRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAI 384
Query: 233 KRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP 292
+ D A E +M +MP+ V+YS ++D +AK+G+ +E L+L+ G D
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352
++++ L ++ + G + +L+EM S+G++ ++V YN LL GK GK + +F E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412
M + P+ T + LI Y K K+A+E++ + D +LY+ L++ GL
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD------NAIELFEEMSELGVAI 466
V A L ++M + P+ +Y ++++ +G +D N L S L
Sbjct: 565 VGSAVSLIDEMT-KEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALT 623
Query: 467 NVMGCTCLIQCLGK----------------ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510
G +IQ G+ + + ++ VF +KP+ +L
Sbjct: 624 ETEG-NRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAIL 682
Query: 511 SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI---KEEFRNVIKDTEVD 567
+ S C + ED ++ L+ + K+ ++ + EN+ + + + + +
Sbjct: 683 NACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQR--ENVWLQAQSLFDKVNEMDGS 740
Query: 568 ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQT 627
F N L D+ + +R EL+ L G + + LD+ +S GAA+
Sbjct: 741 TASAFYNALTDMLWHFG-QKRGAELV---ALEGRSRQVWENVWSDSCLDLHLMSSGAARA 796
Query: 628 ALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQG---LATAFASHVNKLAAPFRQSE 684
+ W+ + IV LP++ TG G H G L A + + APF S+
Sbjct: 797 MVHAWLLNIRSIVYEGHELPKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSK 856
Query: 685 GKAGCFVATREDLVSWVQ 702
G F ++ + +W++
Sbjct: 857 CNMGRFTSSGSVVATWLR 874
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 12/340 (3%)
Query: 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFG 200
+RA T I H +R ++K+ F +K P + YNV + + G
Sbjct: 210 VRAYTTILHAYSRTGK---------YEKAIDLFERMKEMGPSPT-LVTYNVILDVFGKMG 259
Query: 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260
R ++ I + +EM S ++ D T ST+++ R L EA E+F + G P VTY
Sbjct: 260 RSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTY 319
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
+A+L V+ K+G E LS+ + + D + ++ L + +G V++ M
Sbjct: 320 NALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK 379
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
GV PN + Y T+++A GKAGK A LF M E+G P+ T A++ + GK + +
Sbjct: 380 KGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE 439
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
+++ M+ N + +NT+L +C + G+ + R+F +MK + +PD ++ ++
Sbjct: 440 MIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGF-EPDRDTFNTLI 498
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
+ YG G+ +A +++ EM+ G V L+ L +
Sbjct: 499 SAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 167/348 (47%), Gaps = 16/348 (4%)
Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD--NITYST 227
++ FF W ++N F Y + L R + + EMV ++ + D ++ +ST
Sbjct: 125 AFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWST 184
Query: 228 IITCAKRCNLFD-------------EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
C +FD EAI+ F +M + + P + + +L +AK GK +
Sbjct: 185 RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD 244
Query: 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334
+V ++ + +G +P ++++ + GD + R + +EMK G+ P+ V YN+++
Sbjct: 245 DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMI 304
Query: 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394
+ GK G+ F+EM + PD T ALI + K LE + M+ N
Sbjct: 305 DGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK 364
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+ + Y+TL++ G++++A + + DM+ P+ Y+YT++++ GN+ +A
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLV-PNEYTYTSLIDANCKIGNLSDAFR 423
Query: 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
L EM ++GV NV+ T LI L A R+ + +FG GV P+
Sbjct: 424 LGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 3/322 (0%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
FP+ +N+ M +++ +E+ ++ ++++T+I + DE
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
+M K+ PD TYSA+++ K K++ L++ G P+ + F+ L
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355
Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
+G+ D ++ Q+M S G+QP++V+YNTL+ K G AR++ D M+ GL PD+
Sbjct: 356 SRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDK 415
Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFE 421
T T LI + + + ALE+ + M +N +D + ++ L+ MC + G V +AER
Sbjct: 416 ITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE-GRVIDAERALR 474
Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
+M L KPD+ +YT M++ + G+ +L +EM G +V+ L+ L K
Sbjct: 475 EM-LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533
Query: 482 RRIDDLVRVFGVSIDRGVKPDD 503
++ + + ++ GV PDD
Sbjct: 534 GQMKNADMLLDAMLNIGVVPDD 555
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| 225427240 | 723 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.969 | 0.753 | 0.0 | |
| 15237467 | 711 | pentatricopeptide repeat-containing prot | 0.992 | 0.991 | 0.719 | 0.0 | |
| 297791025 | 711 | pentatricopeptide repeat-containing prot | 0.992 | 0.991 | 0.722 | 0.0 | |
| 449462001 | 710 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.988 | 0.738 | 0.0 | |
| 356510655 | 712 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.991 | 0.695 | 0.0 | |
| 357476703 | 715 | Pentatricopeptide repeat-containing prot | 0.992 | 0.986 | 0.686 | 0.0 | |
| 356563451 | 714 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.988 | 0.694 | 0.0 | |
| 255557625 | 677 | pentatricopeptide repeat-containing prot | 0.933 | 0.979 | 0.684 | 0.0 | |
| 242037347 | 722 | hypothetical protein SORBIDRAFT_01g00064 | 0.952 | 0.936 | 0.483 | 0.0 | |
| 219884651 | 716 | unknown [Zea mays] | 0.902 | 0.895 | 0.508 | 0.0 |
| >gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/715 (75%), Positives = 611/715 (85%), Gaps = 14/715 (1%)
Query: 2 AASLSTALDVHLSIPKSD--TKRPIFLTKPTRRSHPIKINISCNSKSSENVAA------- 52
+A+L T +DVH SIP TK P +K T+ S I CNS S
Sbjct: 3 SATLCTGVDVHFSIPHPSHTTKYPNLFSKSTKFSSNT-FTIRCNSSSRSPPKPKPKPKPT 61
Query: 53 --ESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQ 110
+S + SLSEQLKPLS T L+ + +T L+SKPKSTW+NPTKP+ SVLSLQR
Sbjct: 62 SSDSEQTNHQNPSLSEQLKPLSKTILTRDHSGQTHLVSKPKSTWINPTKPKPSVLSLQRH 121
Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQK 169
KR YSYNP++RDLKLFA+K+N+ ++++E+ FL + +IPH PTR+NALL+LNSLK W K
Sbjct: 122 KRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLLLNSLKPWPK 181
Query: 170 SYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII 229
+Y FFNWIK+QNLFPMETIFYNVTMKSLRFGRQFQLIE+LANEM+S +ELDNITYSTII
Sbjct: 182 TYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTII 241
Query: 230 TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289
TCAKRCNLFD+A++WFERMYKTGLMPDEVTYSAILDVYAK GKVEEVLSLYERG ASGWK
Sbjct: 242 TCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWK 301
Query: 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 349
PDPIAF+VLGKMFGE+GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL
Sbjct: 302 PDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSL 361
Query: 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
F+EMV SG+ PD KTLTAL+KIYGKARWA+DALELWERMR N WPMDFILYNTLL+MCAD
Sbjct: 362 FEEMVGSGVIPDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCAD 421
Query: 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM 469
+GL EEAE+LFEDMK S++C+PD++SYTAMLNIYGSGGNVD A++LF+EMSELGV INVM
Sbjct: 422 LGLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVM 481
Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529
GCTCL QCLG+ARRIDDLV+VF VS++RGVKPDDRLCGCLLSVVS CE +ED KV+ CL
Sbjct: 482 GCTCLSQCLGRARRIDDLVKVFEVSLERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACL 541
Query: 530 QQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589
QQANPKLVAF+NL+E+ FE +KEEFR ++ DT V+ARRPFCNCLIDICRNR+L+ERA
Sbjct: 542 QQANPKLVAFVNLLEEK-ISFEALKEEFRGILTDTAVEARRPFCNCLIDICRNRSLHERA 600
Query: 590 HELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQL 649
HELLYLGTLYGLYPGLHN+T DEW LDVRSLSVGAA TALEEWM TL+KIV REE LP+
Sbjct: 601 HELLYLGTLYGLYPGLHNRTADEWCLDVRSLSVGAAHTALEEWMGTLSKIVQREEALPEA 660
Query: 650 FLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR 704
F A TGTGTHKFSQGLA+AFASHV KLAAPF QSE KAGCFVATREDLVSWVQ+R
Sbjct: 661 FSANTGTGTHKFSQGLASAFASHVKKLAAPFTQSEEKAGCFVATREDLVSWVQSR 715
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46580, chloroplastic; Flags: Precursor gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana] gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/714 (71%), Positives = 610/714 (85%), Gaps = 9/714 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
MA L+TA+DV + SDTK+ KP+ R+S K+NISC+S E P
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEP-IT 59
Query: 59 TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
TKT SLSEQLKPLS+TTL + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60 TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
P+++DL+ FA KLN TE++ FL + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWV 176
Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
KS++LFPMETIFYNVTMKSLRFGRQFQLIE++A EMV + +ELDNITYSTIITCAKRCNL
Sbjct: 177 KSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+++AIEWFERMYKTGLMPDEVTYSAILDVY+KSGKVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
LTP+EKTLTAL+KIYGKARWA+DAL+LWE M+ KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
RLF DMK S C+PDN+SYTAMLNIYGSGG + A+ELFEEM + GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
LGKA+RIDD+V VF +SI RGVKPDDRLCGCLLSV++LCE+SED KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536
Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
F+NLI D T +E +KEEF+ VI T+V+ARRPFCNCLIDICR N +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGT 596
Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTG 656
Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
TH+FSQGLA +FA H+ +L+APFRQS+ + G FVAT+EDLVSW++++ P +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RPGIFVATKEDLVSWLESKFPPLVTS 709
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791025|ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309232|gb|EFH39656.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/714 (72%), Positives = 609/714 (85%), Gaps = 9/714 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPIKINISCNSKSSENVAAESPNPE 58
MA L+TA+DV + SDTK+ KP+ R+S K+NISC+S E P
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLLRQSRTRKLNISCSSLKQPKTLEEEP-IT 59
Query: 59 TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
TKT SLSEQLKPLS+TTL + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60 TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
P+++DL+ FA+KLN + TE++ FL + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFAQKLNSSNFTEKSEFLSLLDEIPHPPDRDNALLVLNSLREWQKTHTFFNWV 176
Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
KS+NLFPMETIFYNVTMKSLRFGRQF LIE++A EMV + +ELDNITYSTIITCAKRCN
Sbjct: 177 KSKNLFPMETIFYNVTMKSLRFGRQFYLIEEMALEMVKDGVELDNITYSTIITCAKRCNF 236
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+D+AIEWFERMYKTGLMPDEVTYSAILDVY+K KVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YDKAIEWFERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFSV 296
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
LTP+EKTLTAL+KIYGKARWAKDAL+LWE M+ KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
RLF DMK S CKPDN+SYTAMLNIYGSGG + A++LFEEM E GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCKPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQC 476
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537
LGKA+RIDDLV VF +SI RGVKPDDRLCGCLLSV++LCE+SED KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDLVYVFDLSIQRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANRKLV 536
Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597
F+NLI D T FE +KEEF+ VI T+V+ARRPFCNCLIDICR + +ERAHELLYLGT
Sbjct: 537 TFVNLIVDEKTEFETVKEEFKLVINATQVEARRPFCNCLIDICRGKKRHERAHELLYLGT 596
Query: 598 LYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
L+GLYPGLHNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEDLPELFLAQTGTG 656
Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
TH+FSQGLA +FA H+ +L+APFRQS+ +AG FVAT+EDLVSW++++ P +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RAGIFVATKEDLVSWLESKFPPLVTS 709
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucumis sativus] gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/712 (73%), Positives = 601/712 (84%), Gaps = 10/712 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPTRRSHPIK-INISCNSKSSENVA--AESPNP 57
MA LS++LD+ L PIF T P RR + K + + C+S S S +
Sbjct: 1 MAVPLSSSLDLKLK------PTPIFFTSPLRRKNVTKRLTLLCSSSKSPRKPSSVSSQSV 54
Query: 58 ETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSY 117
+ K SLSEQLK LS+TTLS ND T LLSKPKSTWVNPTKP+RSVLSLQRQKRS+YSY
Sbjct: 55 DNKNPSLSEQLKNLSTTTLSNAPNDETRLLSKPKSTWVNPTKPKRSVLSLQRQKRSSYSY 114
Query: 118 NPRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNW 176
NP++RDLK FA KLN CD++++A F+ A+ EIPH PT+ENALLILNSL+ WQK++ FFNW
Sbjct: 115 NPKMRDLKSFAHKLNACDSSDDASFIAALEEIPHPPTKENALLILNSLRPWQKTHLFFNW 174
Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
IKSQNLFPMETIFYNV MKSLR+GRQFQLIE LANEM+S IELDNITYSTIITCAK+C+
Sbjct: 175 IKSQNLFPMETIFYNVAMKSLRYGRQFQLIEDLANEMISAGIELDNITYSTIITCAKKCS 234
Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
FD+A+EWFERMYKTGLMPDEVTYSAILDVYA GKVEEVLSLYERG ASGW PDP FS
Sbjct: 235 RFDKAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFS 294
Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
VLGKMFGE+GDYDGI YVLQEMKS+ +QPNLVVYNTLL+AMGKAGKPG ARSLFDEMVES
Sbjct: 295 VLGKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVES 354
Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
G+TP+EKTLTAL+KIYGKARWA+DAL+LWERMR N WPMDFILYNTLLNMCAD+GL EEA
Sbjct: 355 GITPNEKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEA 414
Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
E LFE+MK S + +PD++SYTAMLNIYGSGGNV ++ELFEEM ELGV INVM CTCLIQ
Sbjct: 415 ETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQ 474
Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536
CLGK+ RIDDLVRVF VS+ +G+KPDDRLCGCLLSV+SLC SED+ KV TCLQQANPKL
Sbjct: 475 CLGKSGRIDDLVRVFNVSVQKGIKPDDRLCGCLLSVLSLCYNSEDINKVFTCLQQANPKL 534
Query: 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596
V+F+NL++ N FE +K EFRN++ +T +ARRPFCNCLIDICRN+NL ERAHELLYLG
Sbjct: 535 VSFINLLQQNDITFEVVKNEFRNILGETAPEARRPFCNCLIDICRNQNLRERAHELLYLG 594
Query: 597 TLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGT 656
+LYGLYPGLHNKT EW LDVRSLSVGAAQTALEEWM TL+KIV REE LP+L A+TG
Sbjct: 595 SLYGLYPGLHNKTETEWCLDVRSLSVGAAQTALEEWMITLSKIVQREEALPELLSAQTGA 654
Query: 657 GTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSI 708
GTH+FSQGLA +FASHV+KLAAPF+ E +AG FVATREDLV+WV +R S+
Sbjct: 655 GTHRFSQGLANSFASHVDKLAAPFQLREDRAGWFVATREDLVTWVHSRVPSV 706
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/716 (69%), Positives = 595/716 (83%), Gaps = 10/716 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIF-LTKPTRRSHPIKINISCNSKSSENVAAESPNPET 59
MA L T +DV+ + DTKR F +T P R+ K I C + +S A +P +
Sbjct: 1 MATPLPTVVDVYFT----DTKRTRFSITTPCRQKTNRKFFIHCATSNSTPEAPPTPTSDN 56
Query: 60 KTL-----SLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRST 114
SLS+QL PL++ TLS D++ LSKPKSTWVNPTK +RSVLS +RQKR+T
Sbjct: 57 NNNNKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRAT 116
Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF 174
YSY+P++RDLK FA+KLN+ ++E+ FL + EIP +RENALLILN+LK WQK+ F
Sbjct: 117 YSYSPQLRDLKRFAQKLNESGSSEDEFLACLEEIPRPISRENALLILNTLKPWQKTNLFL 176
Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
NWI++QNL PMETIFYNVTMKSLRFG+QF LIE LA++M+ N + LDNITYSTII+CAK+
Sbjct: 177 NWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEDLAHQMIDNGVPLDNITYSTIISCAKK 236
Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
CNL+D+A+ WFERMYKTGLMPDEVTYSAILDVYA+ GKVEEV+SLYERG A+GWKPDPI
Sbjct: 237 CNLYDKAVHWFERMYKTGLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPIT 296
Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
FSVLGKMFGE+GDYDGIRYV QEM+S+GVQPNLVVYNTLLEAMGKAGKPG AR LF+EM+
Sbjct: 297 FSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMI 356
Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
ESG+ P+EKTLTA+IKIYGKARW++DALELW+RM+EN WPMDFILYNTLLNMCAD+GLVE
Sbjct: 357 ESGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVE 416
Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
EAE LF DMK S +CKPD++SYTAMLNIYGS G+VD A++LF+EM +LGV +NVMG TCL
Sbjct: 417 EAETLFRDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCL 476
Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
IQCLG+A DDLVRVF +S++RG+KPDDRLCGCLLSVVSL + S D KV+ CLQQANP
Sbjct: 477 IQCLGRAMEFDDLVRVFDISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANP 536
Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
KLVAF++LIED T FE +KEEF+ ++ + V+ RRPFCNCLIDICRN++L ERAHELLY
Sbjct: 537 KLVAFIHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAHELLY 596
Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAET 654
LGTLYGLYPGLHNKT++EW LDVRSLSVGAA TALEEWMWTL KIV REE LP+LFLA+T
Sbjct: 597 LGTLYGLYPGLHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQT 656
Query: 655 GTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
GTG HKF+QGL +FASH+ KLAAPF+QSE K GCF+A+REDLVSWVQ++ ++ T
Sbjct: 657 GTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIASREDLVSWVQSKSTAAAT 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/712 (68%), Positives = 585/712 (82%), Gaps = 7/712 (0%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPTR---RSHPIKINISCNSKSSENVAAESPNP 57
MA SLS++ +H+S + T R F PT +SH + S S + N
Sbjct: 1 MATSLSSS--IHISFLDTKTTRTRFKFPPTTTTLKSHRRFLISSSKSIPDSETTPPNNNN 58
Query: 58 ETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSY 117
K SLS+QL L++TTLS ++ +LSKPK TWVNPTK +R VLS QR KRS+ SY
Sbjct: 59 NKKNSSLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKTKRPVLSHQRHKRSSVSY 118
Query: 118 NPRVRDLKLFARKLNDCD--NTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFN 175
NP++R+ + FA++LN+CD +++E F+ + EIP TR NALL+LNSL+ WQK++ FFN
Sbjct: 119 NPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNALLVLNSLRPWQKTHMFFN 178
Query: 176 WIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235
WIK+QNL PMETIFYNVTMKSLRFGRQF +IE+LA++M+ +ELDNITYSTII+CAK+C
Sbjct: 179 WIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKC 238
Query: 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295
NLFD+A+ WFERMYKTGLMPDEVT+SAILDVYA+ GKVEEV++L+ERG A+GWKPDPI F
Sbjct: 239 NLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITF 298
Query: 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
SVLGKMFGE+GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG ARSLF+EM++
Sbjct: 299 SVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMID 358
Query: 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415
SG+ P+EKTLTA+IKIYGKARW+KDALELW+RM+EN WPMDFILYNTLLNMCAD+GL+EE
Sbjct: 359 SGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEE 418
Query: 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475
AE LF DMK S++CKPD++SYTAMLNIYGS G VD A++LFEEMS+ G+ +NVMGCTCLI
Sbjct: 419 AETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLI 478
Query: 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535
QCLGKA IDDLV+VF +S++RGVKPDDRLCGCLLSVVSL + S+D KV+ CLQ+ANPK
Sbjct: 479 QCLGKAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPK 538
Query: 536 LVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595
LVAF+ LI D T FE +KEEF+ ++ + V+ RRPFCNCLIDICRN++L ERAHELLYL
Sbjct: 539 LVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYL 598
Query: 596 GTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETG 655
GTLYG YP LHNKT EW LDVR+LSVGAA TALEEWM TL KIV REE LP LFLA+TG
Sbjct: 599 GTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLAQTG 658
Query: 656 TGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
TG HKF+QGL +FASH+ KLAAPFRQSE K GCF+AT+EDL+SWVQ+ S
Sbjct: 659 TGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISWVQSNSPS 710
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/716 (69%), Positives = 595/716 (83%), Gaps = 10/716 (1%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIF--LTKPTRRSHPIKINISCNSKSSENVAAESP--- 55
MA LST +DV+ + DTKR F T P R+ K I C + +S A +P
Sbjct: 1 MATPLSTVVDVYFT----DTKRTRFSITTTPCRQKTNRKFFIHCATSNSTPEAPPTPTSD 56
Query: 56 -NPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRST 114
N + K SLS+QL PL++ TLS D++ LSKPKSTWVNPTK +RSVLS +RQKR+T
Sbjct: 57 NNNKKKNTSLSDQLAPLANKTLSSATRDQSYALSKPKSTWVNPTKAKRSVLSSERQKRAT 116
Query: 115 YSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFF 174
YSY+P++RDLK FA+KLN+ ++E+AFL + EIP +RENALLILN+LK WQK+ F
Sbjct: 117 YSYSPQLRDLKRFAQKLNESGSSEDAFLACLEEIPRPISRENALLILNTLKPWQKTNLFL 176
Query: 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234
NWI++QNL PMETIFYNVTMKSLRFG+QF LIE+LA++M+ N + LDNITYSTII+CAK+
Sbjct: 177 NWIRTQNLLPMETIFYNVTMKSLRFGKQFGLIEELAHQMIDNGVPLDNITYSTIISCAKK 236
Query: 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294
CNL+D+A+ WFERMYKT LMPDEVTYSAILDVYA+ GKVEEV+SLYERG A+GWKPDPI
Sbjct: 237 CNLYDKAVHWFERMYKTSLMPDEVTYSAILDVYARLGKVEEVISLYERGRATGWKPDPIT 296
Query: 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
FSVLGKMFGE+GDYDGIRYV QEM+S+GVQPNLVVYNTLLEAMGKAGKP AR LF+EM+
Sbjct: 297 FSVLGKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMI 356
Query: 355 ESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414
E G+ P+EKTLTA+IKIYGKARW++DALELW+RM+EN WPMDFILYNTLLNMCAD+GLVE
Sbjct: 357 ELGIVPNEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVE 416
Query: 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
EAE LF DMK S +CKPD++SYTAMLNIYGS G+VD A++LF EM + GV +NVMG TCL
Sbjct: 417 EAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCL 476
Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
IQCLG+A DDLVRVFG+S++RG+KPDDRLCGCLLSVVSL + S D KV+ CLQ+ANP
Sbjct: 477 IQCLGRATEFDDLVRVFGISVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANP 536
Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLY 594
KLVAF++LIED + FE++KEEF+ ++ + V+ RRPFCNCLIDICRN++L ERAHELLY
Sbjct: 537 KLVAFIHLIEDEKSSFESVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLRERAHELLY 596
Query: 595 LGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAET 654
LGTLYGLYPGLHNKT +EW LDVRSLSVGAA TALEEWMWTL KIV REE LP+LFLA+T
Sbjct: 597 LGTLYGLYPGLHNKTDNEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLAQT 656
Query: 655 GTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
GTG HKF+QGL +FASH+ KLAAPF+QSE K GCF+A+REDLVSWVQ++ ++ T
Sbjct: 657 GTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAAT 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/720 (68%), Positives = 555/720 (77%), Gaps = 57/720 (7%)
Query: 2 AASLSTALDVHLSIPK-SDTKRPIFLTKP-----TRRSHPIK--INISCNSKSSENVAAE 53
AASLS A D HL+I SD K+PI T T ++P + + ISCNS+ + +E
Sbjct: 3 AASLSAAPDFHLTITHHSDKKKPILFTSSSPITITHNNNPYRRRLTISCNSRKTSKHLSE 62
Query: 54 SPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLL---SKPKSTWVNPTKPRRSVLSLQRQ 110
SPNP K SLS+QLKPLSSTTLS T T SKP STWVNPTKP+RSVLSLQRQ
Sbjct: 63 SPNP--KNPSLSDQLKPLSSTTLSTTTTTTTTKHSLLSKPNSTWVNPTKPKRSVLSLQRQ 120
Query: 111 KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKS 170
KRS YS NP+V++L+LFA+KLNDCD+TE +FL + +IP+ TRENALLILNSL+ WQK+
Sbjct: 121 KRSPYSLNPKVKELRLFAQKLNDCDSTESSFLSLLEQIPYPLTRENALLILNSLRPWQKA 180
Query: 171 YFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230
+ FFNWIK+QN FP+ETIFYNVTMKSLRFGRQF+LI++LANEMVSNEIELDNITYSTIIT
Sbjct: 181 HLFFNWIKTQNSFPVETIFYNVTMKSLRFGRQFELIDKLANEMVSNEIELDNITYSTIIT 240
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
CAKRCN FD A+EWFERMYKTGLMPDEVTYSAILDVYAK G+VEEVLSLYERGVASGWKP
Sbjct: 241 CAKRCNRFDMALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKP 300
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
DPI FSVL KMFGE+GDYDGIRYVLQEMKSL VQPN+VVYNTLLEAMGKAGKPGLARSLF
Sbjct: 301 DPITFSVLAKMFGEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLF 360
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
DEMVESGLTP+EKTLTAL KIYGKARWAKDA+ELWERMR N WPMDFILYNTLL+MCAD+
Sbjct: 361 DEMVESGLTPNEKTLTALAKIYGKARWAKDAMELWERMRSNDWPMDFILYNTLLSMCADL 420
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG 470
G+ +EAE LFEDMK S++C G VD+ + +F E GV +
Sbjct: 421 GMEKEAETLFEDMKRSEHCSQI---------CLGKANRVDDLVRVFNFSMERGVNPDDRL 471
Query: 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530
C C LLSVVSLCE SEDV KV+ CLQ
Sbjct: 472 CGC-----------------------------------LLSVVSLCEESEDVDKVLACLQ 496
Query: 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAH 590
ANPKLVA + LI + + FE +KEEF+ ++ DT V+ARRPFCNCLID+CRNRNL+ RAH
Sbjct: 497 VANPKLVALVKLIAEEESSFETVKEEFKAIVSDTAVEARRPFCNCLIDVCRNRNLHGRAH 556
Query: 591 ELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLF 650
ELLYLG+LYGLYP LHNKT DEWSLDVRSLSVGAA TALEEWM TL K V R E LP++F
Sbjct: 557 ELLYLGSLYGLYPDLHNKTEDEWSLDVRSLSVGAAHTALEEWMGTLVKFVQRNEALPEIF 616
Query: 651 LAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSSITT 710
A TGTGTHKFSQGLA AFASHV KLAAPFRQSE KAGCFVATREDLV+W Q+R S+ T
Sbjct: 617 SAHTGTGTHKFSQGLANAFASHVEKLAAPFRQSEEKAGCFVATREDLVTWAQSRSPSLIT 676
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242037347|ref|XP_002466068.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor] gi|241919922|gb|EER93066.1| hypothetical protein SORBIDRAFT_01g000640 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/714 (48%), Positives = 483/714 (67%), Gaps = 38/714 (5%)
Query: 16 PKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTT 75
P+S ++ TKP + I C+S ++ + SP SLSEQL+PLS T
Sbjct: 20 PRSRSRYQHPKTKPKHTA-----TILCSSSAATATGSASP-------SLSEQLEPLSRTL 67
Query: 76 LSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLN- 132
L + TP+ +P + TWVNPT+P+ SVLSL R +R + S N L+ R L
Sbjct: 68 L---HDKPTPIADRPTPEPTWVNPTRPKPSVLSLSRHRRRSPSANASSAPLQPLLRALRA 124
Query: 133 -----DCDNTEEAFL------RAITEIPHQPTRENALLILNSLK-FWQKSYFFFNWIKS- 179
D T +AF P+ +ALL+LN L W+K+ W+++
Sbjct: 125 LPEDADLAATLDAFFLQQGGQGQGQGQGAAPSPSDALLLLNYLHPSWRKTLSLLAWLRAL 184
Query: 180 -QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238
F ++TIF+NV +KSLR RQ+ E+LA +M+ + LDNITYST+IT A+RC F
Sbjct: 185 PAGAFQLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITAARRCRQF 244
Query: 239 DEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+A+EWFERMY G++PDEVTYSA+LDVYA+ G EEVL+L++R SGWKPD +AF+V
Sbjct: 245 AKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKPDHVAFAV 304
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
L KMFGE+GDY+GI++V +EM +G++PN+ VYN LLEA+GK GKPGLAR+LF+EMVE G
Sbjct: 305 LAKMFGEAGDYEGIQFVFKEMTEVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMVEQG 364
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+GLV EAE
Sbjct: 365 VDPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADNILCNTLLSMCADVGLVNEAE 424
Query: 418 RLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474
+LF +MK D KPD +SYTAM+NIYGS G+ D A++LF EM + G+ N+M T +
Sbjct: 425 QLFNEMKDPECRDVPKPDKWSYTAMINIYGSNGDTDRALQLFGEMLKGGIEPNIMSYTIV 484
Query: 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534
IQCLGKA+RI V V +++G+KPDDRLCGCLLSV++L + E++ V++ LQ+ N
Sbjct: 485 IQCLGKAQRIQQAVEVLEAGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEIVLSSLQKFNQ 543
Query: 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-NERAHELL 593
LV + ++ D G ++I +E ++V+ + RRP+CNCLID+CRN +RA E+
Sbjct: 544 NLVKLIRVLSDAQVGADDITKELKSVLNAAAPEVRRPYCNCLIDVCRNHGFPPQRAREVF 603
Query: 594 YLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAE 653
+L YGLY L ++ +EWSLD+RSLSVGAA+TA ++WM T+++ ++++ LP+ F
Sbjct: 604 HLAQTYGLYTKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWVQQKALPESFSVY 663
Query: 654 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPSS 707
TG+ THKF+QGLA+AFA+H+ ++A PF SE +AG F+++R+DLVSW+Q SS
Sbjct: 664 TGSSTHKFAQGLASAFAAHLEQMAVPFHASESQAGSFISSRDDLVSWLQMSSSS 717
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219884651|gb|ACL52700.1| unknown [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/661 (50%), Positives = 468/661 (70%), Gaps = 20/661 (3%)
Query: 63 SLSEQLKPLSSTTLSPTKNDRTPLLSKP--KSTWVNPTKPRRSVLSLQRQKRSTYSYNPR 120
SLS+QL+PLS T L + TP+ +P + TWVNPTKP+ SVLSL+R +R + N
Sbjct: 55 SLSQQLEPLSRTLL---HDKPTPIADRPTPEPTWVNPTKPKPSVLSLRRHRRRSPPANTS 111
Query: 121 VRDLKLFARKLN------DCDNTEEAFLRAITEIPHQPTRENALLILNSLK-FWQKSYFF 173
L+ R L D T +AF P+ +ALL+LN L W+KS
Sbjct: 112 STPLQPLLRALRALPEDADLAGTLDAFFLQQQGQGAAPSPSDALLLLNYLHPSWRKSLSL 171
Query: 174 FNWIKS--QNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITC 231
W+++ FP++TIF+NV +KSLR RQ+ E+LA +M+ + LDNITYST+IT
Sbjct: 172 LAWLRALPAGAFPLDTIFFNVALKSLRAARQWPHAERLALDMLDAGVPLDNITYSTLITA 231
Query: 232 AKRCNLFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
A+RC F +A+EWFERMY G++PDEVTYSA+LDVYA+ G EEVL+L++R SGWKP
Sbjct: 232 ARRCRQFAKAVEWFERMYAADGVLPDEVTYSAVLDVYAQLGMKEEVLALFDRARGSGWKP 291
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
D +AF+VL KMFGE+GDYDGI++V +EM+ +G++PN+ VYN LLEA+GK GKPGLAR+LF
Sbjct: 292 DHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIKPNIFVYNALLEALGKTGKPGLARNLF 351
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
+EM++ G+ P+ +TLTAL KIYG+ARW +DAL+LW++MRE K P D IL NTLL+MCAD+
Sbjct: 352 EEMIDQGVEPNARTLTALAKIYGRARWGRDALQLWDKMRELKLPADSILCNTLLSMCADV 411
Query: 411 GLVEEAERLFEDMK---LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
GLV EAE+LF +MK D KPD +SYTAM+NIYGS G+ D+A++LF EM + G+ N
Sbjct: 412 GLVAEAEQLFNEMKGPECRDVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPN 471
Query: 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527
+M T +IQCLGKARRI V V +++G+KPDDRLCGCLLSV++L + E++ V++
Sbjct: 472 IMSYTIVIQCLGKARRIQQAVEVLESGLEKGLKPDDRLCGCLLSVIAL-SSGEEMEMVLS 530
Query: 528 CLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNL-N 586
L++ N LV + ++ D G ++I EE ++V+ + RRP+CNCLID+CRN
Sbjct: 531 SLEKVNQNLVKLIRVLGDAQVGGDDITEELKSVLNSAAPEVRRPYCNCLIDVCRNHGFPP 590
Query: 587 ERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVL 646
+RA E+ +L YGLY L ++ +EWSLD+RSLSVGAA+TA ++WM T+++ +++ L
Sbjct: 591 QRAREVFHLAQTYGLYSKLQSRKDEEWSLDLRSLSVGAAKTAFDDWMQTVSERWAQQKDL 650
Query: 647 PQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARPS 706
P+ F TG+ THKF+QGLA+AFA+H++++A PF SE +AG F+++R+DLVSW+Q S
Sbjct: 651 PESFSVYTGSSTHKFAQGLASAFAAHLDQMAVPFHASESQAGSFISSRDDLVSWLQMSRS 710
Query: 707 S 707
S
Sbjct: 711 S 711
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 710 | ||||||
| TAIR|locus:2142320 | 711 | AT5G46580 "AT5G46580" [Arabido | 0.992 | 0.991 | 0.679 | 3.3e-260 | |
| TAIR|locus:2130549 | 702 | SVR7 "suppressor of variegatio | 0.864 | 0.874 | 0.365 | 1.9e-108 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.674 | 0.560 | 0.229 | 1.1e-36 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.615 | 0.644 | 0.255 | 2.5e-35 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.584 | 0.506 | 0.243 | 7.3e-33 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.523 | 0.405 | 0.271 | 6.4e-31 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.470 | 0.387 | 0.264 | 1.3e-30 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.576 | 0.497 | 0.276 | 3.5e-30 | |
| TAIR|locus:504956171 | 650 | ABO5 "ABA Overly-Sensitive 5" | 0.476 | 0.52 | 0.263 | 1.7e-29 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.449 | 0.525 | 0.270 | 8.9e-29 |
| TAIR|locus:2142320 AT5G46580 "AT5G46580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
Identities = 485/714 (67%), Positives = 576/714 (80%)
Query: 1 MAASLSTALDVHLSIPKSDTKRPIFLTKPT--RRSHPXXXXXXXXXXXXENVAAESPNPE 58
MA L+TA+DV + SDTK+ KP+ R+S E P
Sbjct: 1 MATVLTTAIDVCFNPQNSDTKKHSLFLKPSLFRQSRSRKLNISCSSLKQPKTLEEEPIT- 59
Query: 59 TKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYN 118
TKT SLSEQLKPLS+TTL + ++T +LSKPKS WVNPT+P+RSVLSLQRQKRS YSYN
Sbjct: 60 TKTPSLSEQLKPLSATTL---RQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYN 116
Query: 119 PRVRDLKLFARKLNDCDNTEEA-FLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWI 177
P+++DL+ FA KLN TE++ FL + EIPH P R+NALL+LNSL+ WQK++ FFNW+
Sbjct: 117 PQIKDLRAFALKLNSSIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLREWQKTHTFFNWV 176
Query: 178 KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237
KS++LFPMETIFYNVTMKSLRFGRQFQLIE++A EMV + +ELDNITYSTIITCAKRCNL
Sbjct: 177 KSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKRCNL 236
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
+++AIEWFERMYKTGLMPDEVTYSAILDVY+KSGKVEEVLSLYER VA+GWKPD IAFSV
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296
Query: 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357
LGKMFGE+GDYDGIRYVLQEMKS+ V+PN+VVYNTLLEAMG+AGKPGLARSLF+EM+E+G
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAG 356
Query: 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417
LTP+EKTLTAL+KIYGKARWA+DAL+LWE M+ KWPMDFILYNTLLNMCADIGL EEAE
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEAE 416
Query: 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477
RLF DMK S C+PDN+SYTAMLNIYGSGG + A+ELFEEM + GV +NVMGCTCL+QC
Sbjct: 417 RLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQC 476
Query: 478 LGKARRIDDLVRVFGVSIDRGVKPDDRXXXXXXXXXXXXETSEDVGKVITCLQQANPKLV 537
LGKA+RIDD+V VF +SI RGVKPDDR E+SED KV+ CL++AN KLV
Sbjct: 477 LGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANKKLV 536
Query: 538 AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHEXXXXXX 597
F+NLI D T +E +KEEF+ VI T+V+ARRPFCNCLIDICR N +ERAHE
Sbjct: 537 TFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICRGNNRHERAHELLYLGT 596
Query: 598 XXXXXXXXHNKTLDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTG 657
HNKT+ EWSLDVRSLSVGAA+TALEEWM TLA I+ R+E LP+LFLA+TGTG
Sbjct: 597 LFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTG 656
Query: 658 THKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQAR-PSSITT 710
TH+FSQGLA +FA H+ +L+APFRQS+ + G FVAT+EDLVSW++++ P +T+
Sbjct: 657 THRFSQGLANSFALHLQQLSAPFRQSD-RPGIFVATKEDLVSWLESKFPPLVTS 709
|
|
| TAIR|locus:2130549 SVR7 "suppressor of variegation 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 229/626 (36%), Positives = 356/626 (56%)
Query: 85 PLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRA 144
P SK WVNP PR S L R+K SY+ R L A L+ C E
Sbjct: 81 PTASK-SYVWVNPKSPRASQL---RRK----SYDSRYSSLIKLAESLDACKPNEADVCDV 132
Query: 145 ITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQ 204
IT + ++A++ LN++ + + N + E I YNVTMK R + +
Sbjct: 133 ITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMKVFRKSKDLE 192
Query: 205 LIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264
E+L +EM+ I+ DN T++TII+CA++ + A+EWFE+M G PD VT +A++
Sbjct: 193 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSSFGCEPDNVTMAAMI 252
Query: 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324
D Y ++G V+ LSLY+R W+ D + FS L +++G SG+YDG + +EMK+LGV+
Sbjct: 253 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVK 312
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
PNLV+YN L+++MG+A +P A+ ++ +++ +G TP+ T AL++ YG+AR+ DAL +
Sbjct: 313 PNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAI 372
Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
+ M+E + ILYNTLL+MCAD V+EA +F+DMK + C PD++++++++ +Y
Sbjct: 373 YREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYA 432
Query: 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
G V A +M E G + T +IQC GKA+++DD+VR F ++ G+ PDDR
Sbjct: 433 CSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDR 492
Query: 505 XXXXXXXXXXXXETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-KEEFRNVIKD 563
SE++GK+I C+++A PKL + ++ + E + K+E +I
Sbjct: 493 FCGCLLNVMTQTP-SEEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDS 551
Query: 564 TEVDARRPFCNCLIDICRNRNLNERAHEXXXXXXXXXXXXXXHNKTLDEWSLDVRSLSVG 623
D ++ + NCLID+C N N ERA E +K+ +WSL ++SLS+G
Sbjct: 552 IGSDVKKAYLNCLIDLCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLG 611
Query: 624 AAQTALEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFS-QGLATAFASHVNKLAAPFR 681
AA TAL WM L++ L E P L TG G HK+S +GLA F SH+ +L APF
Sbjct: 612 AALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFH 671
Query: 682 QSEGKAGCFVATREDLVSWVQARPSS 707
++ K G F+ T +W+++R S+
Sbjct: 672 EAPDKVGWFLTTSVAAKAWLESRRSA 697
|
|
| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 112/489 (22%), Positives = 216/489 (44%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY 280
D TY+T++ R F E + + M + G P+ VTY+ ++ Y ++ ++E ++++
Sbjct: 358 DGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVF 417
Query: 281 ERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340
+ +G +PD + + L + ++G D + Q M+ G+ P+ Y+ ++ +GKA
Sbjct: 418 NQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Query: 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
G A LF EMV G TP+ T +I ++ KAR + AL+L+ M+ + D + Y
Sbjct: 478 GHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTY 537
Query: 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
+ ++ + G +EEAE +F +M+ ++ PD Y +++++G GNVD A + ++ M
Sbjct: 538 SIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PDEPVYGLLVDLWGKAGNVDKAWQWYQAML 596
Query: 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRXXXXXXXXXXXXETSE 520
+ G+ NV C L+ + R+ + + + G+ P + ++
Sbjct: 597 QAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNF 656
Query: 521 DVGKVITCLQ-QANPKLVAFLNLIEDNSTGFENIKEEFRNVIK---DTEVDARRPFCNCL 576
D+G + +P + L + G + +++ N + + +++R + +
Sbjct: 657 DMGFCGQLMAVSGHPAHMFLLKMPPAGPDG-QKVRDHVSNFLDFMHSEDRESKRGLMDAV 715
Query: 577 IDICRNRNLNERAHEXXXXXXXXXXX-XXXHNKTLDEWSLDVRSLSVGAAQTALEEWMWT 635
+D L E A K+ W +++ +S G A AL +
Sbjct: 716 VDFLHKSGLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAW 775
Query: 636 LAKIVLREEVLPQLFLAETGTGTHKFSQGLAT---AFASHVNKLAAPFRQSEGKAGCFVA 692
K +L P TG G G + A +N PF G +GCFV
Sbjct: 776 FRKQMLVSGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVG 835
Query: 693 TREDLVSWV 701
+ E L +W+
Sbjct: 836 SGEPLKNWL 844
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 114/446 (25%), Positives = 213/446 (47%)
Query: 57 PETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYS 116
PE + +L + +S+++ S + ++ +P+ N T +++ +R +RS +
Sbjct: 33 PEARQRNL---IFTVSASSSSESTQNKKVWRKQPEK---NTTSSFQALRKHRRYQRSAF- 85
Query: 117 YNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNW 176
+ V D+ ++ N +E F T Q + + +L+ WQ+S +W
Sbjct: 86 LDHNV-DMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDW 144
Query: 177 IKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236
+ + + YNV ++++ +QF + L +EM + D TYST+IT +
Sbjct: 145 VHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEG 204
Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296
+FD A+ W ++M + + D V YS ++++ + + +S++ R SG PD +A++
Sbjct: 205 MFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYN 264
Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
+ ++G++ + R +++EM GV PN V Y+TLL + K A S+F EM E
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 324
Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
D T +I +YG+ K+A L+ +R+ + + YNT+L + + L EA
Sbjct: 325 NCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEA 384
Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476
LF M+ D + + +Y M+ IYG + A L +EM G+ N + + +I
Sbjct: 385 IHLFRLMQRKDI-EQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIIS 443
Query: 477 CLGKARRIDDLVRVFGVSIDRGVKPD 502
GKA ++D +F GV+ D
Sbjct: 444 IWGKAGKLDRAATLFQKLRSSGVEID 469
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 7.3e-33, P = 7.3e-33
Identities = 104/427 (24%), Positives = 195/427 (45%)
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITY 225
Q++ F +K+ F + + YN + +G+ + E ++ NEMV N +TY
Sbjct: 296 QEAAQVFEEMKAAG-FSYDKVTYNALLDV--YGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 226 STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285
+++I+ R + DEA+E +M + G PD TY+ +L + ++GKVE +S++E
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 286 SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345
+G KP+ F+ KM+G G + + + E+ G+ P++V +NTLL G+ G
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
+F EM +G P+ +T LI Y + + A+ ++ RM + D YNT+L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLA 532
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
A G+ E++E++ +M+ CKP+ +Y ++L+ Y +G + L EE+ +
Sbjct: 533 ALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIE 591
Query: 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRXXXXXXXXXXXXETSEDVGKV 525
+ L+ K + + R F +RG PD + V
Sbjct: 592 PRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGV 651
Query: 526 ITCLQQAN--PKLVAFLNLI--EDNSTGFENIKEEFRNVI-KDTEVDARRPFCNCLIDIC 580
+ +++ P + + +L+ S F +E R ++ K + D + + C
Sbjct: 652 LDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIIS-YNTVIYAYC 710
Query: 581 RNRNLNE 587
RN + +
Sbjct: 711 RNTRMRD 717
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 6.4e-31, Sum P(2) = 6.4e-31
Identities = 105/387 (27%), Positives = 175/387 (45%)
Query: 207 EQLANEMVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV--TYS 261
E + M+S E +L D+ TY II N D+A+ ++E K +E S
Sbjct: 180 EMFHSLMLSFESKLCGSDDCTY--IIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLAS 237
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
A++ + GKV ++E A G+ AFS L +G SG ++ V MK
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 322 GVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
G++PNLV YN +++A GK G FDEM +G+ PD T +L+ + + +
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
A L++ M + D YNTLL+ G ++ A + M + P+ SY+ ++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIM-PNVVSYSTVI 416
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500
+ + G D A+ LF EM LG+A++ + L+ K R ++ + + G+K
Sbjct: 417 DGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIK 476
Query: 501 PDDRXXXXXXXXXXXXETSEDVGKVITCLQQAN--PKLVAFLNLIEDNSTG--FENIKEE 556
D ++V KV T +++ + P L+ + LI+ S G ++ E
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536
Query: 557 FRNVIKDTEVDARRPFCNCLID-ICRN 582
FR K + A + LID +C+N
Sbjct: 537 FRE-FKSAGLRADVVLYSALIDALCKN 562
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 90/340 (26%), Positives = 165/340 (48%)
Query: 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNEIELDNITY 225
++ S + +K++ + P + YN + + R G ++ + L EM I+ D +TY
Sbjct: 192 YETSLELLDRMKNEKISP-SILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTY 250
Query: 226 STIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284
+T+++ CA R L DEA F M G++PD TYS +++ + K ++E+V L
Sbjct: 251 NTLLSACAIR-GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA 309
Query: 285 ASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344
+ G PD +++VL + + +SG V +M++ G PN Y+ LL G++G+
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYD 369
Query: 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404
R LF EM S PD T LI+++G+ + K+ + L+ M E D Y ++
Sbjct: 370 DVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGII 429
Query: 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
C GL E+A ++ + M +D P + +YT ++ +G + A+ F M E+G
Sbjct: 430 FACGKGGLHEDARKILQYMTANDIV-PSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGS 488
Query: 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504
++ L+ + + + + +D G+ P +R
Sbjct: 489 NPSIETFHSLLYSFARGGLVKESEAILSRLVDSGI-PRNR 527
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 3.5e-30, P = 3.5e-30
Identities = 118/426 (27%), Positives = 182/426 (42%)
Query: 173 FFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLA--NEMVSNEIELDNITYSTIIT 230
FF +KS P T+ YN ++ FG+ E L+ EM N D++TY+ ++
Sbjct: 303 FFAELKSCGYEP-GTVTYNALLQV--FGKAGVYTEALSVLKEMEENSCPADSVTYNELVA 359
Query: 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
R EA E M K G+MP+ +TY+ ++D Y K+GK +E L L+ +G P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
Query: 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
+ ++ + + G+ + + +L +MKS G PN +NT+L G G +F
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVF 479
Query: 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410
EM G PD T LI YG+ DA +++ M + YN LLN A
Sbjct: 480 REMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARK 539
Query: 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAINVM 469
G E + DMK + KP SY+ ML Y GGN IE E + G + + M
Sbjct: 540 GDWRSGENVISDMKSKGF-KPTETSYSLMLQCYAKGGNY-LGIERIENRIKEGQIFPSWM 597
Query: 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRXXXXXXXXXXXXETSEDVGKVITCL 529
L+ K R + R F + G KPD + ++ +
Sbjct: 598 LLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESI 657
Query: 530 QQ--ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC---NCLID-ICRNR 583
++ +P LV + +L++ E K E ++K E +P N +I CR R
Sbjct: 658 REDGLSPDLVTYNSLMDMYVRRGECWKAE--EILKTLEKSQLKPDLVSYNTVIKGFCR-R 714
Query: 584 NLNERA 589
L + A
Sbjct: 715 GLMQEA 720
|
|
| TAIR|locus:504956171 ABO5 "ABA Overly-Sensitive 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.7e-29, P = 1.7e-29
Identities = 91/345 (26%), Positives = 180/345 (52%)
Query: 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL-RFGRQFQLIEQLANEMVSNE 217
++L++L +K+ F +K ++ + Y + ++++ R G+ + + L NEM++
Sbjct: 243 MLLDALAKDEKACQVFEDMKKRHC-RRDEYTYTIMIRTMGRIGKCDEAVG-LFNEMITEG 300
Query: 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277
+ L+ + Y+T++ + + D+AI+ F RM +TG P+E TYS +L++ G++ +
Sbjct: 301 LTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLD 360
Query: 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337
+ E ++ + I +S L + + G + +M S V+ Y ++LE++
Sbjct: 361 GVVE--ISKRYMTQGI-YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESL 417
Query: 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397
AGK A + ++ E G+ D + GK + +L+E+M+++ D
Sbjct: 418 CGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDI 477
Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457
YN L+ +G V+EA +FE+++ SD CKPD SY +++N G G+VD A F+
Sbjct: 478 FTYNILIASFGRVGEVDEAINIFEELERSD-CKPDIISYNSLINCLGKNGDVDEAHVRFK 536
Query: 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502
EM E G+ +V+ + L++C GK R++ +F + +G +P+
Sbjct: 537 EMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPN 581
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 87/322 (27%), Positives = 160/322 (49%)
Query: 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAI 242
FP+ +N+ M +++ +E+ ++ ++++T+I + DE
Sbjct: 236 FPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGF 295
Query: 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF 302
+M K+ PD TYSA+++ K K++ L++ G P+ + F+ L
Sbjct: 296 RLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355
Query: 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
+G+ D ++ Q+M S G+QP++V+YNTL+ K G AR++ D M+ GL PD+
Sbjct: 356 SRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDK 415
Query: 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL-NMCADIGLVEEAERLFE 421
T T LI + + + ALE+ + M +N +D + ++ L+ MC + G V +AER
Sbjct: 416 ITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE-GRVIDAERALR 474
Query: 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481
+M L KPD+ +YT M++ + G+ +L +EM G +V+ L+ L K
Sbjct: 475 EM-LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533
Query: 482 RRIDDLVRVFGVSIDRGVKPDD 503
++ + + ++ GV PDD
Sbjct: 534 GQMKNADMLLDAMLNIGVVPDD 555
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LS25 | PP420_ARATH | No assigned EC number | 0.7198 | 0.9929 | 0.9915 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00015784001 | SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (723 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 710 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-07 | |
| smart00463 | 80 | smart00463, SMR, Small MutS-related domain | 3e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-23
Identities = 80/353 (22%), Positives = 149/353 (42%), Gaps = 47/353 (13%)
Query: 225 YSTII-TCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERG 283
Y+T+I TCAK D E F M G+ + T+ A++D A++G+V + Y
Sbjct: 475 YTTLISTCAK-SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 284 VASGWKPDPI-----------------AFSVLGKMFGES--------------------G 306
+ KPD + AF VL +M E+ G
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
D + V Q + ++ VY + + + G A S++D+M + G+ PDE +
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
AL+ + G A A E+ + R+ + + Y++L+ C++ ++A L+ED+K
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486
+P + A++ G + A+E+ EM LG+ N + + L+ + D
Sbjct: 714 KL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLC----ETSEDVGKVITCLQQANPK 535
+ + + + G+KP+ +C C+ LC E + +G+ + P+
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCI---TGLCLRRFEKACALGEPVVSFDSGRPQ 822
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 26/285 (9%)
Query: 240 EAIEWFERMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI--AFS 296
+ I+ E M K GL+ D++ ++ K V+E + +P F+
Sbjct: 388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF------AKLIRNPTLSTFN 441
Query: 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356
+L + S D DG VL+ ++ G++ + +Y TL+ K+GK +F EMV +
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 357 GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
G+ + T ALI +A A + MR D +++N L++ C G V+ A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 417 ERLFEDMKL-SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-------AINV 468
+ +MK + PD+ + A++ + G VD A E+++ + E + I V
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 469 MGCTCLIQCLGKARRI-DDLVRVFGVSIDRGVKPDDRLCGCLLSV 512
C+ A I DD+ + +GVKPD+ L+ V
Sbjct: 622 NSCS-QKGDWDFALSIYDDMKK-------KGVKPDEVFFSALVDV 658
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 1e-16
Identities = 66/254 (25%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV 297
D A+ + + GL D Y+ ++ AKSGKV+ + ++ V +G + + F
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512
Query: 298 L-------GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350
L G++ G Y GI M+S V+P+ VV+N L+ A G++G + R+ F
Sbjct: 513 LIDGCARAGQVAKAFGAY-GI------MRSKNVKPDRVVFNALISACGQSG--AVDRA-F 562
Query: 351 DEMVESG-----LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405
D + E + PD T+ AL+K A A E+++ + E +Y +N
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465
C+ G + A +++DMK KPD ++A++++ G G++D A E+ ++ + G+
Sbjct: 623 SCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 466 I------NVMGCTC 473
+ ++MG
Sbjct: 682 LGTVSYSSLMGACS 695
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-12
Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 51/337 (15%)
Query: 212 EMVSNEIEL-DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270
E V + +E D ++++ +I+ ++ L D+A+E + M + + PDE+T +++L A
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD--------------------- 309
G ++ + L+E G + + L +M+ + D
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462
Query: 310 -GIR---------YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359
G+R ++M L ++PN V L A + G + + ++ +G+
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 360 PDEKTLTALIKIY---GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416
D AL+ +Y G+ +A W + ++ D + +N LL G A
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYA------WNQFNSHE--KDVVSWNILLTGYVAHGKGSMA 573
Query: 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-LGVAINVMGCTCLI 475
LF M S PD ++ ++L G V +E F M E + N+ C++
Sbjct: 574 VELFNRMVESGVN-PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 476 QCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLS 511
LG+A ++ + I++ + PD + G LL+
Sbjct: 633 DLLGRAGKLTEAYNF----INKMPITPDPAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 8e-12
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370
P++V YNTL++ K GK A LF+EM + G+ P+ T + LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 8e-12
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 39/217 (17%)
Query: 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
+EA+ + M +G+ D+ T+S ++ ++++ +E + + +G+ D +A + L
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 299 GKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
++ + G + R V M + NL+ +N L+ G G+ A +F+ M+ G+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418
P+ T A +L+ C GL E+
Sbjct: 423 APNHVTFLA-----------------------------------VLSACRYSGLSEQGWE 447
Query: 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455
+F+ M + KP Y M+ + G G +D A +
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 99/461 (21%), Positives = 182/461 (39%), Gaps = 61/461 (13%)
Query: 13 LSIPKSDTKRPIFLTKPTRRSHPIKINISCNSKSSENVAAESPNPETKTLSLSEQLKPLS 72
LS P+ F + R P +ISC+S + + LKP
Sbjct: 20 LSNPRLLHSPRKFSLRGRRTKTPFS-SISCSS-------------------VEQGLKPRP 59
Query: 73 STTLSPTKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVRDLKLFARKLN 132
P +S+ K ++ T+ R+S +SL Q + L R
Sbjct: 60 RLKPEPI----RIEVSESKDARLDDTQIRKSGVSLCSQ----------IEKLVACGRHRE 105
Query: 133 DCDNTEEAFLRAITEIPHQPTRENALLI----LNSLKFWQKSYFFFNWIKSQNLFPMETI 188
+ E +P + +AL+ L S++ + Y+ ++S P + +
Sbjct: 106 ALELFEILEAGCPFTLP--ASTYDALVEACIALKSIRCVKAVYWH---VESSGFEPDQYM 160
Query: 189 FYNVTMKSLRFGRQFQLIE--QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFE 246
V + ++ G LI+ +L +EM + ++ TII + EA F
Sbjct: 161 MNRVLLMHVKCG---MLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFR 213
Query: 247 RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306
M++ G + T+ +L A G L+ + +G D L M+ + G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366
D + R V M + V +N++L G A L+ EM +SG++ D+ T +
Sbjct: 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
+I+I+ + + A + + +P+D + L+++ + G +E+A +F+ M
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389
Query: 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467
+ S+ A++ YG+ G A+E+FE M GVA N
Sbjct: 390 NLI-----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-11
Identities = 65/291 (22%), Positives = 121/291 (41%), Gaps = 46/291 (15%)
Query: 237 LFDEAIEWFERMYKTGLMPDEVTYSAIL----------------------------DV-- 266
FDEA+ + RM G+ PD T+ +L DV
Sbjct: 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226
Query: 267 -----YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKS 320
Y K G V +++R D I+++ + + E+G+ +G+ M+
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFT-MRE 281
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380
L V P+L+ +++ A G L R + +V++G D +LI++Y +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440
A +++ RM E K D + + +++ GL ++A + M+ D PD + ++L
Sbjct: 342 AEKVFSRM-ETK---DAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVL 396
Query: 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
+ G++D ++L E G+ V+ LI+ K + ID + VF
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 4e-11
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 53/267 (19%)
Query: 252 GLMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYD 309
G MP D +++ ++ YAK+G +E L LY R + +G +PD F + + G D
Sbjct: 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204
Query: 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369
R V + G + ++ V N L+ K G AR +FD M D + A+I
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMI 260
Query: 370 KIYGKARWAKDALELWERMRENK-----------------------------------WP 394
Y + + LEL+ MRE +
Sbjct: 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320
Query: 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454
+D + N+L+ M +G EAE++F M+ K D S+TAM++ Y G D A+E
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TK-DAVSWTAMISGYEKNGLPDKALE 375
Query: 455 LFEEMS-------ELGVAINVMGCTCL 474
+ M E+ +A + C CL
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACL 402
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 9e-11
Identities = 75/301 (24%), Positives = 128/301 (42%), Gaps = 28/301 (9%)
Query: 210 ANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
A E+ N E D I++++II + N EA+ +F +M L P+ VT A L A+
Sbjct: 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACAR 501
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
G + ++ + +G D + L ++ G + Y + S + ++V
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR---MNYAWNQFNS--HEKDVVS 556
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
+N LL GK +A LF+ MVESG+ PDE T +L+ ++ LE + M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM- 615
Query: 390 ENKWPMDFIL--YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447
E K+ + L Y ++++ G + EA M + PD + A+LN
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI----TPDPAVWGALLN----AC 667
Query: 448 NVDNAIELFE-------EMSELGVAINVMGCTCLIQCLGKAR---RIDDLVRVFGVSIDR 497
+ +EL E E+ V ++ C GK R+ +R G+++D
Sbjct: 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA-GKWDEVARVRKTMRENGLTVDP 726
Query: 498 G 498
G
Sbjct: 727 G 727
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-10
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441
YNTL++ G VEEA +LF +MK KP+ Y+Y+ +++
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK 269
D +TY+T+I + +EA++ F M K G+ P+ TYS ++D K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 35/85 (41%)
Query: 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314
PD VTY+ ++D Y K GKVEE L L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFN--------------------------------- 27
Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGK 339
EMK G++PN+ Y+ L++ + K
Sbjct: 28 --EMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 8e-08
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480
PD +Y +++ Y G V+ A++LF EM + G+ NV + LI L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE 362
V YNTL++ + KAG+ A LF EM E G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (120), Expect = 8e-07
Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 6/265 (2%)
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYK-TGLMPDEVTY 260
L + E ++ + + + EA+E E +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 261 SAILDVYAKSGKVEEVLSLYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMK 319
+ K G++EE L L E+ + P A LG + G Y+ +L++
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379
+L P+L L A+ + G A L+++ +E +E L +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 380 --DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
+ALEL E+ + D L + +G EEA +E K + + +
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE--KALELDPDNAEALY 240
Query: 438 AMLNIYGSGGNVDNAIELFEEMSEL 462
+ + G + A+E E+ EL
Sbjct: 241 NLALLLLELGRYEEALEALEKALEL 265
|
Length = 291 |
| >gnl|CDD|214676 smart00463, SMR, Small MutS-related domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 612 EWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS--QGLATAF 669
+WSLD+ L+V A TAL++++ + + +L + TG G H G+ A
Sbjct: 1 KWSLDLHGLTVEEALTALDKFL----NNARLKGLEQKLVI-ITGKGKHSLGGKSGVKPAL 55
Query: 670 ASHVNKLAAPFRQSEGKAGCFVAT 693
H+ + F EG +G V
Sbjct: 56 KEHLRVESFRF-AEEGNSGVLVVK 78
|
Length = 80 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 5/162 (3%)
Query: 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389
Y+ L+EA ++++ + SG PD+ + ++ ++ K DA L++ M
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185
Query: 390 ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449
E + + T++ D G EA LF +M D + ++ ML G+
Sbjct: 186 ER----NLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491
+L + + GV + LI K I+D VF
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464
+Y ++++ Y G ++ A+ELF+EM E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390
N+ L A+ G+ A L + M E + DE AL ++ R ++ + R
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
+ + L N +L+M G + A +F M + D +S+ ++ Y G D
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFD 169
Query: 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVR 489
A+ L+ M GV +V C+++ G I DL R
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGG---IPDLAR 205
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460
KPD +Y +++ G VD A+EL +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGL 358
V YN+L+ KAGK A LF EM E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354
G++P++V YNTL++ + +AG+ A L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 5e-05
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409
PD T LI Y K ++AL+L+ M++ + Y+ L++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV 468
+Y +++ G V+ A+ELF+EM E G+ +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP 360
L YN LL A+ KAG P LA ++ +EM SGL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432
+ YNTL++ G VEEA LF++MK +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG-IEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291
VTY+ ++D K+G+VEE L L++ G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE 257
+TY+T+I + +EA+E F+ M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 398 ILYNTLLNMCADIGLVEEAERLFEDMK 424
+ YN+L++ G +EEA LF++MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 208 QLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM-YKTGLMPDEVTYSAILDV 266
+L N MV + + D +T+ +++ R + + +E+F M K + P+ Y+ ++D+
Sbjct: 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634
Query: 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVL 298
++GK+ E + + PDP + L
Sbjct: 635 LGRAGKLTEAYNFINKMPI---TPDPAVWGAL 663
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 258 VTYSAILDVYAKSGKVEEVLSLYER 282
VTY++++ Y K+GK+EE L L++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
GL PD VTY+ ++D ++G+V+E + L +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMP 255
TY+ ++ + D A+ E M +GL P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 364 TLTALIKIYGKARWAKDALELWERMRENKWPMD 396
T LI KA ++ALEL++ M+E D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 364 TLTALIKIYGKARWAKDALELWERMREN 391
T +LI Y KA ++ALEL++ M+E
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.78 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.5 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.39 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.38 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.35 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.11 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.79 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.31 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.29 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.09 | |
| smart00463 | 80 | SMR Small MutS-related domain. | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.03 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.9 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.86 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.72 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.71 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.66 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.63 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.6 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.41 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.55 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.54 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.54 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.26 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.91 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.77 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.77 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.51 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.34 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.15 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.52 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.51 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.42 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.06 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.8 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.67 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.15 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.93 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.93 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.88 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.61 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.49 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.42 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.13 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.06 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.85 | |
| PF01713 | 83 | Smr: Smr domain; InterPro: IPR002625 This family i | 90.71 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.98 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 88.76 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.73 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.58 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.22 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.07 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.97 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.88 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.62 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.1 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.76 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.49 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.49 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.25 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.99 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.32 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.39 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.09 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.13 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.35 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.31 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.15 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.0 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.44 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=646.35 Aligned_cols=541 Identities=19% Similarity=0.295 Sum_probs=495.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...++++.|..+|+.|.+.+ +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 3444557999999999998865 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA--SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (710)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 67899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005178 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397 (710)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 397 (710)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+|++||.+|++.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999886 899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHH--h
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----C-------------------ETSEDVGKVITCLQQ--A 532 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~--~ 532 (710)
|++.|++++|.++|++|.+.|+.||..+|++++..|.+ + +..++|..+|++|.+ +
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999976542 1 123678899999976 5
Q ss_pred CCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC---CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccc
Q 005178 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD---ARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKT 609 (710)
Q Consensus 533 ~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 609 (710)
.|+..++..+|+. ....+ ....+..+++.+... |+..+|++|+++|.+. .++|..+|++|...|+.|++..+.
T Consensus 844 ~Pd~~T~~~vL~c-l~~~~-~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~ 919 (1060)
T PLN03218 844 LPTMEVLSQVLGC-LQLPH-DATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKK 919 (1060)
T ss_pred CCCHHHHHHHHHH-hcccc-cHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccccc
Confidence 7999999888854 33333 567788888877554 4566999999998443 478999999999999999998755
Q ss_pred cccchhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeE--------EEeccCcccch--hhHHHHHHHHhhhcCCC
Q 005178 610 LDEWSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFL--------AETGTGTHKFS--QGLATAFASHVNKLAAP 679 (710)
Q Consensus 610 ~~~w~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~--------i~~~~~~~~~~--~~~~~~~~~~l~~l~~~ 679 (710)
. .|..+++.++.|.++.|+..|++.++.+.+.|..+|++.. +.++.|.|.+. .++.++|.++|++|+.|
T Consensus 920 ~-~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~ 998 (1060)
T PLN03218 920 S-PIVIDAEELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLP 998 (1060)
T ss_pred C-ceEEEcccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCC
Confidence 5 9999999999999999999999999999999999999999 44444444333 23689999999999999
Q ss_pred ccccCCCCceEEechHHHHHHHhcCCCCC
Q 005178 680 FRQSEGKAGCFVATREDLVSWVQARPSSI 708 (710)
Q Consensus 680 ~~~~~~~~g~~~~~~~~~~~w~~~~~~~~ 708 (710)
|+.+++. |||..|+.++++||+.+..+|
T Consensus 999 ~~~~~~~-g~~~~~~~~~~~wl~~~~~~~ 1026 (1060)
T PLN03218 999 YQGSESH-GKLRINGLSLRRWFQPKLKSP 1026 (1060)
T ss_pred CCCCCCC-CeEEeccHHHHHHhcccCCCC
Confidence 9999988 999999999999999986554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=562.84 Aligned_cols=507 Identities=17% Similarity=0.256 Sum_probs=464.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+.+|++|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 33455667899999999999876678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 239 DEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+
T Consensus 175 ~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999964 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005178 319 KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFI 398 (710)
Q Consensus 319 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 398 (710)
.+.|+.+|..+|+.|+++|++.|++++|.++|++|. .+|.++|+++|.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999996 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+|+.++.+|++.|++++|.+++..|.+.|. .||..+|++||++|+++|++++|.++|++|.+ ||..+|++||.+|
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y 401 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999996 89999999999999999999999999999975 7999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---hCCcHH---HHHHHHHhhcCCccc
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ---ANPKLV---AFLNLIEDNSTGFEN 552 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~---~~~~~L~~~~~~~~~ 552 (710)
+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ +.|+.. .+++.|++. |
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~----G- 476 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE----G- 476 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc----C-
Confidence 99999999999999999999999999999999999999999999999999964 567643 355666652 5
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccccC-hHHHHHHHHH
Q 005178 553 IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS-VGAAQTALEE 631 (710)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~G~~~~Al~~ 631 (710)
..++|.+++++++..|+..+|++|+.+|+++|+++.|.++++++.. +.|+ +...|..++..+. .|..++|.+.
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~----~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPE----KLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCC----CCcchHHHHHHHHhCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999998763 3343 4556777777774 5999999887
Q ss_pred HHHHHHHHHHhc-cCCCCeeEEEeccCcccchhhH-----HHHHHHHhhhcCCCccccCCCCceEEechHHH
Q 005178 632 WMWTLAKIVLRE-EVLPQLFLAETGTGTHKFSQGL-----ATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697 (710)
Q Consensus 632 ~~~~~~~~~~~~-~~~p~~~~i~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~g~~~~~~~~~ 697 (710)
+.+ +.++| ++.|+++||+.+.+.|.|..|+ .+.|+..|.++...+++. ||...+..++
T Consensus 551 ~~~----m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----gy~~~~~~~~ 614 (697)
T PLN03081 551 VET----LKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY----GYVAEENELL 614 (697)
T ss_pred HHH----HHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHc----CCCCCcchhh
Confidence 755 45678 8999999999999999999765 678899999888888876 7776665443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=557.55 Aligned_cols=526 Identities=16% Similarity=0.174 Sum_probs=426.0
Q ss_pred cCCCCHHHHHHHHhhCCCCCCH----------------------HHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHH
Q 005178 133 DCDNTEEAFLRAITEIPHQPTR----------------------ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFY 190 (710)
Q Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~----------------------~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~ 190 (710)
+..|+...+..+++.+...+.. ..++..+...++++.|..+|+.|. .+|.++|
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~ 256 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISW 256 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchh
Confidence 4556766776666655432221 223344455567888999998873 5688889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 191 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|.+.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 337 g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 337 GSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred CCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 99999999998886 37888899999999999999999999999988888888888888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005178 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430 (710)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 430 (710)
+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+. |..+|+++|.+|++.|+.++|.++|++|... . +
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~-~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L-K 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-C-C
Confidence 88888888888888888888888888888888888887643 6667777777777777777777777777642 2 5
Q ss_pred CCHHHHHHHH-----------------------------------HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 431 PDNYSYTAML-----------------------------------NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 431 ~~~~~~~~li-----------------------------------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
||..||+.++ ++|+++|++++|.++|++| .+|..+|+++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 6666665544 5555566666666666555 47889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---hCCcHHH---HHHHHHhhcCC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ---ANPKLVA---FLNLIEDNSTG 549 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~~---~~~~L~~~~~~ 549 (710)
.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ +.|+..+ ++++|+++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~--- 638 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA--- 638 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC---
Confidence 99999999999999999999999999999999999999999999999999999973 5787544 44666652
Q ss_pred cccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccccC-hHHHHHH
Q 005178 550 FENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSLS-VGAAQTA 628 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~G~~~~A 628 (710)
| ..++|.+++++|+.+|+..+|++|+.+|..+|+.+.|+.+.+++.+. .|+ +...|..+...|. .|.+++|
T Consensus 639 -G-~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~----~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 639 -G-KLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPN----SVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred -C-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC----CcchHHHHHHHHHHCCChHHH
Confidence 5 78999999999999999999999999999999999999888877642 333 4555665555553 4888886
Q ss_pred HHHHHHHHHHHHHhc-cCCCCeeEEEeccCcccchhhH-----HHHHHHHhhhcCCCccccCCCCceEEechHHH
Q 005178 629 LEEWMWTLAKIVLRE-EVLPQLFLAETGTGTHKFSQGL-----ATAFASHVNKLAAPFRQSEGKAGCFVATREDL 697 (710)
Q Consensus 629 l~~~~~~~~~~~~~~-~~~p~~~~i~~~~~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~~g~~~~~~~~~ 697 (710)
...... +.++| ++.||++||+.++..|.|..|+ .+.|+.+|++|...++.. ||...++.++
T Consensus 711 ~~vr~~----M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~----g~~~~~~~~~ 777 (857)
T PLN03077 711 ARVRKT----MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKAS----GLAGSESSSM 777 (857)
T ss_pred HHHHHH----HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhC----CcCCCcchhc
Confidence 554433 44688 9999999999999999999776 788999999999888876 8776665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=531.57 Aligned_cols=454 Identities=18% Similarity=0.293 Sum_probs=371.2
Q ss_pred hCCCCCCHHHHHHHHHhc---cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 005178 147 EIPHQPTRENALLILNSL---KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNI 223 (710)
Q Consensus 147 ~~~~~~~~~~~~~~l~~l---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 223 (710)
.............+++.+ +++++|+++|++|.+.+.++++...++.++..|.+.|.+++|..+|+.|.. ||..
T Consensus 363 ~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred ccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 344444555555555555 578889999998888766677888888888888888888888888888764 7888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE--SGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
+.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888875 56788888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|. .||..+|+.+|++|++.|++++|.++|++|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888885 78888888888888888888888888888888
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hCCcHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ--ANPKLVAF 539 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~ 539 (710)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +.|+..++
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888864 56887776
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHhc---cCCCChhhHHHHHHHHHh----C-------------------CCHHHHHHHH
Q 005178 540 LNLIEDNSTGFENIKEEFRNVIKDT---EVDARRPFCNCLIDICRN----R-------------------NLNERAHELL 593 (710)
Q Consensus 540 ~~~L~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 593 (710)
..++..+ ...| ..++|.+++..| +..||..+|++|+++|.+ . +..++|..+|
T Consensus 758 ~sLL~a~-~k~G-~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 758 SILLVAS-ERKD-DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHH-HHCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 6666432 3334 566677666654 667888888888877542 1 2246788889
Q ss_pred HHHHHcCCCCcccc
Q 005178 594 YLGTLYGLYPGLHN 607 (710)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (710)
++|.+.|+.|+..+
T Consensus 836 ~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 836 RETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHCCCCCCHHH
Confidence 99998898887544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=499.62 Aligned_cols=430 Identities=19% Similarity=0.244 Sum_probs=396.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
++..+...++++.|.+++..+.+.+ +.||..+||.++.+|+++|++++|.++|++|.+ ||..+|+++|.+|++.|
T Consensus 129 ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 129 LVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc
Confidence 3344555567889999999998865 889999999999999999999999999999974 79999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+|++||.+|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (710)
+|. .+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||
T Consensus 284 ~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 284 GMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred hCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 996 4699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
..+|++||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999996 58999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 477 CLGKARRIDDLVRVFGVSID-RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
+|++.|.+++|.++|+.|.+ .|+.|+..+|++++.+|.+.|++++|.++++++ ...|+...+..+|..+ ...| ..+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~-~~~g-~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTAC-RIHK-NLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH-HHcC-CcH
Confidence 99999999999999999985 799999999999999999999999999999876 3567776655555543 2234 456
Q ss_pred HHHHHHHhc-cCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 556 EFRNVIKDT-EVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 556 ~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
.+....+.+ ..+|+ ...|..|+++|.+.|++++|.+++++|.+.|+..
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 666666553 56665 4489999999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=517.56 Aligned_cols=453 Identities=17% Similarity=0.203 Sum_probs=376.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 158 LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237 (710)
Q Consensus 158 ~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 237 (710)
+..+...++.+.|..+|+.|. +||+++||++|.+|++.|++++|+++|++|...|+.||..||+.+|.+|.+.++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 344455667888999998884 578899999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQE 317 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 317 (710)
++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888863 6888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005178 318 MKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF 397 (710)
Q Consensus 318 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 397 (710)
|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.+ ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888864 578
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+|+++|.+|++.|++++|.++|++|.+.+. .||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||.+
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNV-SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 8888888888888888888888888888885 788888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCcHHHHHHHHH------------
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ-ANPKLVAFLNLIE------------ 544 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~L~------------ 544 (710)
|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|.++|++|.+ ..|+..++..+|.
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 8888888888888888743 5667888888888888888888888888753 4677666555443
Q ss_pred ----------------------hhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 545 ----------------------DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLY 602 (710)
Q Consensus 545 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 602 (710)
..+.+.| ..++|...++.+ .+|..+||+|+.+|+++|+.++|.++|++|.+.|+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G-~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCG-RMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcC-CHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 2233334 567777777777 788889999999999999999999999999999988
Q ss_pred CcccccccccchhcccccC-hHHHHHHHHHHHHHH
Q 005178 603 PGLHNKTLDEWSLDVRSLS-VGAAQTALEEWMWTL 636 (710)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~~-~G~~~~Al~~~~~~~ 636 (710)
||.. +|..++..++ .|..++|.+.|.+..
T Consensus 587 Pd~~-----T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 587 PDEV-----TFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCcc-----cHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 8744 4556677775 488999988886643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-26 Score=274.96 Aligned_cols=455 Identities=13% Similarity=0.057 Sum_probs=338.2
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 240 (710)
+...++++.|+.+++.+... .+.+..+|+.+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 33445677777777777654 35566777888888888888888888888877653 2245566667777778888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 241 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
|.+.|+++.+.+.. +..++..+...+.+.|+.++|..+|+++...+ +.+...+..++..|.+.|++++|..+++++.+
T Consensus 518 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888776433 67777888888888888888888888887654 44566777788888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400 (710)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 400 (710)
.. +.+..+|..+..++...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|..+|+++.+... .+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 43 4466778888888888888888888888887653 34566777788888888888888888888877533 357778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..++..+...|++++|.++++.+.+.. +.+...+..+...|...|++++|...|+++.+.+ |+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 888888888888888888888888766 5677778888888888888888888888888754 444677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
.|++++|.+.++++.+... .+...+..+...|...|++++|.+.|+++.+..|++..++..++..+...++ .+|..+
T Consensus 749 ~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD--PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc--HHHHHH
Confidence 8888888888888876532 3566777888888888888888888888888888888887777777666664 456666
Q ss_pred HHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 561 IKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 561 ~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
+++ +...|+.+ ++..++.++...|++++|.++|+++++.+.. +...+..+...+ ..|..++|...+.+.+
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 655 34455443 6778888888888888888888888765521 223333333333 4588888888876643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-25 Score=262.80 Aligned_cols=458 Identities=9% Similarity=-0.000 Sum_probs=244.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC---------------------
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--------------------- 218 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------------- 218 (710)
++...+++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+...
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHH
Confidence 4445556677777776665542 33445555555566666666666666665554421
Q ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 219 ------------ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS 286 (710)
Q Consensus 219 ------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 286 (710)
+.+..+|..+..++...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++...
T Consensus 450 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22334444444444455555555555554444321 13334444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 287 GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 287 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
+ +.+..++..+...+.+.|++++|..+++++.+.+ +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|.
T Consensus 529 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 D-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred C-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 2 2334445555555555555555555555554432 2233444555555555555555555555555432 33445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+..+|.+.|++++|+..|+.+.+... .+...+..+..+|...|++++|..+|+++.+.. +.+..++..++..+...
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 555666666666666666665554422 244455555556666666666666666655543 34455566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
|++++|..+++.+.+.+. .+...+..+...+.+.|++++|+..|+++...+ |+..++..+..++.+.|++++|.+.+
T Consensus 683 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655432 244555556666666666666666666665532 33345555666666666666666666
Q ss_pred HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 527 ~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
+.+.+..|++..+...++..+...| ..++|...++++ ...|+ ..+++.++.++.+.|+ ++|+..++++.... |+
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~ 835 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQK-DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PN 835 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CC
Confidence 6666666666666666655555444 344444444442 33333 3356666666666666 55666666655321 22
Q ss_pred ccccccccchhccccc-ChHHHHHHHHHHHHHHH
Q 005178 605 LHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTLA 637 (710)
Q Consensus 605 ~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~~ 637 (710)
+...|......+ ..|..++|+..+.+.++
T Consensus 836 ----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 836 ----IPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223333332222 34777777776655443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-21 Score=195.35 Aligned_cols=432 Identities=18% Similarity=0.120 Sum_probs=348.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
..+.+.....-....+. .+.-..+|..+.+++...|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+
T Consensus 95 ~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 95 GSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred ccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHH
Confidence 33444444433333333 2445688999999999999999999999999987322 46789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 244 WFERMYKTGLMPDEVTY-SAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
.|.+.++. .|+.... ..+...+-..|+.++|...|.+.++. .|. .+.|+.|...+-.+|+...|++.|++..+.
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99999886 4555443 34445555689999999999998875 344 678999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 322 GVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 322 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
.|+ ...|-.|...|...+.+++|...|.+.... .|+ .+.+..+...|...|.++.|+..|++.++.... =...
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~A 322 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDA 322 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHH
Confidence 454 358889999999999999999999998875 444 677888888999999999999999999986332 3578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCL 478 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 478 (710)
|+.|..++-..|++.+|++.|.+..... +....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIY 398 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHH
Confidence 9999999999999999999999998875 56788999999999999999999999999988 4455 45789999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
-+.|++++|+..+++.+. |+|+.. .|+.+...|...|+.+.|.+.+.++..++|....+.+.|+..+.+.|+..+++
T Consensus 399 kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 999999999999999887 778754 89999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhccCCCChh-hHHHHHHHHHhCC---CHH----HHHHHHHHHHHcCCCCcccccccccc
Q 005178 558 RNVIKDTEVDARRP-FCNCLIDICRNRN---LNE----RAHELLYLGTLYGLYPGLHNKTLDEW 613 (710)
Q Consensus 558 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g---~~~----~A~~~~~~~~~~~~~~~~~~~~~~~w 613 (710)
..+-..+..+||.+ .|..++..+--.. +++ +-..+...-+....+|.+.++-...|
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~y 540 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLY 540 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCccccccc
Confidence 88888899999876 4544444322211 222 22233333345556677766443333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=196.17 Aligned_cols=422 Identities=13% Similarity=0.136 Sum_probs=346.6
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
+++.+|.+.....-.+.+. +....-.+-.++....+++....--....+.. ..-..+|..+.+.+...|++++|+.+
T Consensus 62 gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4688888887766554422 22223334456677777777665544444432 33568999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
|+.+++.... .+..|..+..++...|+.+.|.+.|.+.+.. .|+.... +.+...+...|++++|...|.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--
Confidence 9999987543 6889999999999999999999999999885 4665544 34555666789999999999998875
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 324 QPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN 401 (710)
Q Consensus 324 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (710)
.|. .+.|+.|.-.+...|+...|+..|++.... .|+ ...|-.|...|...+.++.|...|.+....... ..+.+.
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 343 357999999999999999999999999876 455 567888999999999999999999988765322 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
.|...|...|.++.|++.|++..+.. +.-...|+.|..++-..|++.+|.+.|.+.+..... -....+.|...|...
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~ 367 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQ 367 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHh
Confidence 88889999999999999999999876 455789999999999999999999999999885322 467888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
|++++|..+|....+ +.|.- ..++.|...|-++|++++|+..|+++.+++|.....+..+|..+...|+...++..+
T Consensus 368 ~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 368 GKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred ccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999999999999887 55554 478899999999999999999999999999999999999999888888666666667
Q ss_pred HHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Q 005178 561 IKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPG 604 (710)
Q Consensus 561 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 604 (710)
.+.+.+.|... ..+.|..+|...|++.+|+.-++.++.. .|+
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPD 488 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPD 488 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCC
Confidence 77788888654 7899999999999999999999987643 455
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-19 Score=213.76 Aligned_cols=458 Identities=10% Similarity=0.000 Sum_probs=284.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC------------------C------
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI------------------E------ 219 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------------------~------ 219 (710)
.+++++|+..++.+.+.. +.+...+..+..++...|++++|+..|+++..... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 357889999999988774 55677788888999999999999999988765321 0
Q ss_pred --------CCHHHH----H-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 220 --------LDNITY----S-----------------TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 220 --------p~~~~~----~-----------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
|+...+ . .....+...|++++|+..|++.++.... +...+..+..+|.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 000000 0 1122456678888888888888876432 677888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKP-DPIAFS------------VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
|++++|+..|++.++..-.. ....|. .+...+.+.|++++|+..|+++.+.. +.+...+..+...+
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 89999988888887753111 111121 22445678888888888888888763 23556777788888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP--------MDFILYNTLLNMCAD 409 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~ 409 (710)
...|++++|++.|+++.+.. +.+...+..+...|. .++.++|+.+++.+...... .....+..+...+..
T Consensus 396 ~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888888653 223444444444432 22344444443332111000 001122233344444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH------------------
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC------------------ 471 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------------------ 471 (710)
.|++++|++.|++..+.. +.+...+..+...|.+.|++++|...++++.+.... +...+
T Consensus 474 ~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~ 550 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALA 550 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555554443 334444445555555555555555555554442211 12111
Q ss_pred --------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 472 --------------------------TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 472 --------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
..+...+...|+.++|+.+++. ...+...+..+...+.+.|++++|+..
T Consensus 551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~ 625 (1157)
T PRK11447 551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAA 625 (1157)
T ss_pred HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 2234455666666666666651 223445667788889999999999999
Q ss_pred HHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 526 ITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 526 ~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
|+++.+.+|++..+...++..+...| ..++|.+.++.. ...|+.. ++..+..++...|++++|.+++++++......
T Consensus 626 y~~al~~~P~~~~a~~~la~~~~~~g-~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 626 YQRVLTREPGNADARLGLIEVDIAQG-DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 99999999999888888888777666 566777777654 4455443 67778889999999999999999887543111
Q ss_pred cccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 604 GLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 604 ~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
.-...+...+....+.+ ..|+.++|+..|...+
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000111111112222 4588888888887765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-19 Score=208.32 Aligned_cols=372 Identities=12% Similarity=0.032 Sum_probs=246.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHH----------------HHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFY----------------NVTMKSLRFGRQFQLIEQLANEMVSNEIELDN 222 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 222 (710)
.++...++.++|.+.++++.+.. +.+...+ ..+...+.+.|++++|++.|+.+.... +|+.
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 34455667999999999998875 3333322 223446788999999999999998763 2332
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------
Q 005178 223 I-TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW------------- 288 (710)
Q Consensus 223 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------------- 288 (710)
. ....+.......|+.++|++.|+++.+.... +...+..+...+...|+.++|+..++++....-
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 2 1111222233468999999999999987533 677888899999999999999999999865320
Q ss_pred ---CCC---HHHHH----------------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 289 ---KPD---PIAFS----------------------------------VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328 (710)
Q Consensus 289 ---~~~---~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 328 (710)
.++ ...+. .+...+...|++++|+..|++..+.. +-+..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 000 00010 11234556788888888888877753 23666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTL------------TALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
++..|..++.+.|++++|+..|++..+..-.. ....| ......+.+.|++++|+..|+++.+... .
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-T 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 77778888888888888888888877653111 11111 1223456677888888888888877643 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------cC
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--------IN 467 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~ 467 (710)
+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+...... ..
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 56667777788888888888888888887765 455666666666664 34566666666554321100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
...+..+...+...|++++|+..|++.++.... +...+..+..+|.+.|++++|...++++.+..|++....
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 123445566677788888888888888774322 344666777888888888888888888888777765543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=200.56 Aligned_cols=311 Identities=15% Similarity=0.097 Sum_probs=227.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD---EVTYSAILDVYAKS 270 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 270 (710)
...+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4455677888889998888887632 2455777788888888888888888888877532221 24677788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL----VVYNTLLEAMGKAGKPGLA 346 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A 346 (710)
|++++|+.+|+++.+.. +.+..+++.++..|.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887652 456778888888888888888888888888775432221 2345667777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 347 RSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 347 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888887653 33455667777888888888888888888876543323456777788888888888888888887765
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK---ARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+|++|.+.++.|++
T Consensus 279 ~---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y---PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 3 45556677788888888888888888887764 5777777777776664 45788888888888876666665
Q ss_pred HHHHHHHHHHHhcCC
Q 005178 504 RLCGCLLSVVSLCET 518 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~ 518 (710)
. .+|.+||.
T Consensus 354 ~------~~c~~cg~ 362 (389)
T PRK11788 354 R------YRCRNCGF 362 (389)
T ss_pred C------EECCCCCC
Confidence 5 23555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-18 Score=188.90 Aligned_cols=253 Identities=13% Similarity=0.006 Sum_probs=204.5
Q ss_pred cCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESG-LTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
.+++++|.+.|++..+.+ ..| ....+..+...+...|++++|+..|++..+.... +...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999999764 223 4567888888899999999999999999886432 4668888899999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..|+++.+.. +.+...|..+...|...|++++|...|++.++.... +...+..+..++.+.|++++|+..|++.++.
T Consensus 386 ~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 386 EDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998876 577889999999999999999999999999986432 5777888999999999999999999999874
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH----HHHH---HhhcCCcccHHHHHHHHHHh-ccCCC
Q 005178 498 GVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF----LNLI---EDNSTGFENIKEEFRNVIKD-TEVDA 568 (710)
Q Consensus 498 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~L---~~~~~~~~~~~~~a~~~~~~-~~~~~ 568 (710)
.| +...++.+..++...|++++|++.|+++.++.|+.... ..++ ...+...+ ..++|..++++ +...|
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~-~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ-DFIEAENLCEKALIIDP 539 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcCC
Confidence 34 46688899999999999999999999999998864321 1111 11111113 56677777765 56667
Q ss_pred Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 569 RRP-FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 569 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+.. .+..++.++...|++++|++.|+++.+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 655 6889999999999999999999987643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-19 Score=188.73 Aligned_cols=264 Identities=18% Similarity=0.184 Sum_probs=139.9
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN---LVVYNTLLEAMGKAGKPGL 345 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~ 345 (710)
..|++++|+..|.++.+.+ +.+..++..+...|...|++++|..+++.+...+..++ ...+..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444432 12233444444444445555555555444444221111 1234444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD----FILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
|..+|+++.+.. +.+..++..++..|.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555554431 23344455555555555555555555555554332221 1123445555566666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
++.+.. +.+...+..+...|.+.|++++|..+|+++.+.+......+++.++.+|.+.|++++|...++++.+. .|
T Consensus 205 ~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 205 KALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 666543 34455666666666666666666666666665432222345666666677777777777777766653 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+...+..++..+.+.|++++|..+++.+.+..|+...
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 4455566666666677777777666666655555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-17 Score=182.56 Aligned_cols=393 Identities=9% Similarity=-0.009 Sum_probs=255.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...++++.|+..|+.+... .|+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 355567899999999998764 4677889999999999999999999999998863 225568888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------------CCCCC-
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS---------------------------GWKPD- 291 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------g~~~~- 291 (710)
+|+..|..+...+...+.. ...++.-+........+...++.-... ...+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665442111111 111111111100011111111100000 00000
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 292 PIAFSVLGKM---FGESGDYDGIRYVLQEMKSLG-VQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 292 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
...+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++.++.. +.+...|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0000001000 012357788888888887654 222 34567777777778888888888888877652 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+...+...|++++|+..|++..+.... +..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHC
Confidence 7777788888888888888887776432 56777777888888888888888888887765 55677777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHhcCChH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-----R-LCGCLLSVVSLCETSE 520 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~-~~~~ll~~~~~~g~~~ 520 (710)
|++++|+..|++.++... .+...|+.+...+...|++++|++.|++.+......+. . .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 888888888888776432 24667777888888888888888888887764321111 1 1222223344467888
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~ 563 (710)
+|.++++++.+++|+...+...|+..+...| ..++|..++++
T Consensus 526 eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g-~~~eAi~~~e~ 567 (615)
T TIGR00990 526 EAENLCEKALIIDPECDIAVATMAQLLLQQG-DVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-CHHHHHHHHHH
Confidence 8888888888888887777777777766666 45566565554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-18 Score=188.21 Aligned_cols=331 Identities=9% Similarity=-0.042 Sum_probs=154.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005178 194 MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV 273 (710)
Q Consensus 194 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 273 (710)
+..+.+.|++++|..+++..+..... +...+..++.++...|++++|++.|+++.+.... +...+..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 33444555555555555555444221 2223333333444455555555555555544221 344445555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
++|+..|+++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 55555555555431 223444455555555555555555555544433211 11222222 2244455555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCC
Q 005178 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE----AERLFEDMKLSDYC 429 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~ 429 (710)
.+....++...+..+..++.+.|++++|+..|++..+.... +...+..+...|...|++++ |...|++..+..
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-- 280 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-- 280 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--
Confidence 44321122223333344455555555555555555544322 34444455555555555543 455555555443
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGC 508 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 508 (710)
+.+...+..+...+...|++++|...++++.+.... +...+..+..+|.+.|++++|+..|+++... .|+.. .+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 344455555555555555555555555555543221 2334444555555555555555555555442 22222 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+..++...|+.++|...|+++.+..|+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 334455555555555555555555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-17 Score=179.03 Aligned_cols=329 Identities=10% Similarity=0.004 Sum_probs=265.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
+..-+..-+++..|+.+++.+.... +.+...+..++..+...|++++|+..|+++..... .+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence 3333444567899999998888764 44555666777777889999999999999998632 24567778888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|++.|+++.+... .+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|..+++
T Consensus 125 ~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998642 267788899999999999999999999887653 2333444333 34788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD----ALELWERMRENK 392 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 392 (710)
.+.+....++...+..+..++.+.|++++|...|+++.+.. +.+...+..+...|...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98876433445555666788899999999999999999864 4467788889999999999986 899999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH-HHH
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV-MGC 471 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~ 471 (710)
.. +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+. ..+
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 43 67889999999999999999999999999876 5677888889999999999999999999998854 443 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..+..++...|+.++|+..|+++.+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44677889999999999999999874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-16 Score=180.15 Aligned_cols=418 Identities=10% Similarity=0.016 Sum_probs=298.9
Q ss_pred CCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT 230 (710)
Q Consensus 151 ~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~ 230 (710)
++...+.+.+....++.++|+.++..+... -+.+...+..+...+...|++++|..+|++.++.. +.+...+..+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334567777888888899999999888763 24566678899999999999999999999988762 234566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
++...|++++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 889999999999999999887432 555 8888889999999999999999999864 3456666778888888999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHH
Q 005178 311 IRYVLQEMKSLGVQPNL------VVYNTLLEAMG-----KAGKP---GLARSLFDEMVES-GLTPDEK-TLT----ALIK 370 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~----~li~ 370 (710)
|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9998886654 2221 01112222221 22334 7788888888754 2223221 111 1133
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhCC
Q 005178 371 IYGKARWAKDALELWERMRENKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGSGG 447 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g 447 (710)
++...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+.....+ ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 455778999999999999887543 332 222357788999999999999999876542110 1345667777889999
Q ss_pred CHHHHHHHHHHHHHcCC-----------CcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGV-----------AIN---VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVV 513 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (710)
++++|..+++.+.+... .|+ ...+..+...+...|+.++|+.+++++...... +...+..+..++
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999887431 123 235566778888999999999999998865322 456788888899
Q ss_pred HhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChhhHHHHHHHH
Q 005178 514 SLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRPFCNCLIDIC 580 (710)
Q Consensus 514 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~ 580 (710)
...|++++|++.++++...+|++..+...++......+ ..++|...++.+ ...|+.+....|-..+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~-~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ-EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999998776666665544445 567777777663 5566665443443333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-16 Score=174.33 Aligned_cols=467 Identities=10% Similarity=0.008 Sum_probs=304.6
Q ss_pred CCCcchhhHHHHHHHhccCCCCHHHHHHHHhhCCCCCCHHHHHHHH------HhccCHHHHHHHHHHHHhCCCCCCcHHH
Q 005178 116 SYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLIL------NSLKFWQKSYFFFNWIKSQNLFPMETIF 189 (710)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l------~~l~~~~~A~~~~~~~~~~~~~~~~~~~ 189 (710)
..+|....+..++..+....+....+.+++...+........+..+ ..+.++++|+..++ .+... ..|+..+
T Consensus 106 ~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~-~~~~~~v 183 (987)
T PRK09782 106 KRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFA-ASPEGKT 183 (987)
T ss_pred hcCcccHHHHHHHHHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhC-CCCCcHH
Confidence 3444444455545555444445556666666666555544333332 12445677777776 43332 3334444
Q ss_pred HHHH-HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005178 190 YNVT-MKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR-CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVY 267 (710)
Q Consensus 190 ~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 267 (710)
.... ..+|.+.|++++|+.++.++.+.+.. +..-...+..+|.. .++ +++..++.. .+.-+...+..++..|
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~y 257 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATAL 257 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHH
Confidence 4444 88899999999999999999988643 44545666667777 366 777777553 2235788888999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHH------------------------------HHHHHHHhcCC---------
Q 005178 268 AKSGKVEEVLSLYERGVASGWK-PDPIAFS------------------------------VLGKMFGESGD--------- 307 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~------------------------------~li~~~~~~g~--------- 307 (710)
.+.|+.++|.++++++...-.. |...+|- .++..+.+.++
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999988886532111 1111111 11233333333
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHC-C-CCCCHHHHH
Q 005178 308 ------------------------------------------------------YDGIRYVLQEMKSL-G-VQPNLVVYN 331 (710)
Q Consensus 308 ------------------------------------------------------~~~A~~~~~~m~~~-g-~~p~~~~~~ 331 (710)
.++|.++|+..... + ...+.....
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 33333333333321 0 011222233
Q ss_pred HHHHHHHHcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHH
Q 005178 332 TLLEAMGKAGK---PGLARSL----------------------FDEMVES-GL-TP--DEKTLTALIKIYGKARWAKDAL 382 (710)
Q Consensus 332 ~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~A~ 382 (710)
-|+..|.+.+. ...+..+ +...... +. ++ +...|..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44444444433 1122111 1111100 11 22 44555666666655 7788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
..|.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+++.++.
T Consensus 497 ~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 497 YAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8777777653 45444444455557899999999999998654 355566777888899999999999999999886
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNL 542 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (710)
+.. +...+..+...+.+.|++++|+..+++.++ +.|+...+..+..++.+.|++++|+..++++...+|++..+...
T Consensus 572 ~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 572 GLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred CCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 422 333344444455567999999999999987 45678889999999999999999999999999999999999999
Q ss_pred HHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 543 IEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 543 L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
++..+...| ..++|...+++ +...|+.+ ++..++.++...|++++|+..|+++++..
T Consensus 649 LG~aL~~~G-~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 649 LGYALWDSG-DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 998877777 45666666654 56677654 88999999999999999999999987543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-16 Score=178.36 Aligned_cols=405 Identities=11% Similarity=0.027 Sum_probs=306.2
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.+.....-.+.+..-.|+.++|++++.+..... +.+...+..+..++...|++++|.++|++.++... .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 4455555667778889999999999999998632 34566789999999999999999999999988742 257778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (710)
+.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998873 44566 8889999999999999999999999864 23556667788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----HHH
Q 005178 344 GLARSLFDEMVESGLTPDE------KTLTALIKIYG-----KARWA---KDALELWERMREN-KWPMDFI-LY----NTL 403 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~l 403 (710)
+.|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999886653 2221 11122222222 22234 7788899988854 2222221 11 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHh
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGCTCLIQCLGK 480 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~ 480 (710)
+.++...|++++|+..|+.+.+.+...|+. ....+...|...|++++|+.+|+++.+..... ....+..+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 344567799999999999999875211332 22335778999999999999999988753221 13556777778999
Q ss_pred cCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 481 ARRIDDLVRVFGVSIDRGV-----------KPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.|++++|+.+++.+..... .|+. ..+..+..++...|+.++|+++++++....|++..+...++..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999986421 2332 2455677788899999999999999999999999988888888
Q ss_pred cCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 547 STGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
+...| ..++|...+++ +...|+.. ++-.++..+...|++++|+.+++.+++
T Consensus 403 ~~~~g-~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 403 LQARG-WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77767 56777777765 56778754 667788889999999999999998864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-14 Score=165.61 Aligned_cols=463 Identities=13% Similarity=0.025 Sum_probs=290.4
Q ss_pred hhCCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH--------HHccCChHHHHHHHHHHHHCC
Q 005178 146 TEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKS--------LRFGRQFQLIEQLANEMVSNE 217 (710)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g 217 (710)
+.....+........+..++++.+|..+++.+.... +.+..++..+... |.+. ++|.+.++ .....
T Consensus 103 kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~ 176 (987)
T PRK09782 103 DQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFA 176 (987)
T ss_pred HHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhC
Confidence 334444444444444556677888888888887764 3344444444444 5555 44444444 22222
Q ss_pred CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 218 IELDNITYSTI-ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK-SGKVEEVLSLYERGVASGWKPDPIAF 295 (710)
Q Consensus 218 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~ 295 (710)
..|+....... ...|.+.|++++|++++.++.+.+.. +......|..+|.. .++ +++..+++. .++-+...+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~ 250 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSR 250 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHH
Confidence 33445555555 77888999999999999999988644 56667777778887 366 777777553 233678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHHc----
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQ-PNLVVY------------------------------NTLLEAMGKA---- 340 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~------------------------------~~li~~~~~~---- 340 (710)
..+...|.+.|+.++|..+++++...-.. |...+| -.++..+.+.
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYD 330 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999998887543111 111111 0012222222
Q ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHC-C-CC
Q 005178 341 -----------------------------------------------------------GKPGLARSLFDEMVES-G-LT 359 (710)
Q Consensus 341 -----------------------------------------------------------g~~~~A~~~~~~m~~~-g-~~ 359 (710)
|+.++|..+|+..... + -.
T Consensus 331 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 331 AAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 3333444444433321 0 11
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHc
Q 005178 360 PDEKTLTALIKIYGKARW---AKDALEL----------------------WERMREN-KW-PM--DFILYNTLLNMCADI 410 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~ 410 (710)
.+......++..|.+.+. ..++..+ +...... +. ++ +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 122233345555555544 2222222 1111110 11 22 45566666666665
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|..+
T Consensus 490 ~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888877777664 355544444555567899999999999987653 34555667778888999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHH-hccCCC
Q 005178 491 FGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIK-DTEVDA 568 (710)
Q Consensus 491 ~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~-~~~~~~ 568 (710)
+++.++.+ |+. ..+..+...+...|++++|...++++.+.+|+ ..+...++.++...| ..++|...++ .+...|
T Consensus 565 l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG-~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 565 LQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH-NVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 99998754 433 33334444555669999999999999999997 667777887777767 5566666555 467777
Q ss_pred Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 569 RRP-FCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 569 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
+.. .++.++.++...|++++|++.++++++.. |+ +...|......+ ..|..++|+..+.+.+
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~----~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PD----DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 765 77889999999999999999999987542 33 223333332332 4577777777665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-14 Score=156.03 Aligned_cols=399 Identities=11% Similarity=0.063 Sum_probs=211.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 156 NALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRC 235 (710)
Q Consensus 156 ~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (710)
+.+.++...++.++|+.+++++... -+........+...|...|++++|+++|+++.+.... +...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc
Confidence 4444555555566666665555411 1222333333344555556666666666666554221 234444444555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 315 (710)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..++..+.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6666666666555544 2333333333333333344444666666665542 233445555555555555555555544
Q ss_pred HHHHHCCCCCCHHHH------HHHHHHH-----HHcCC---HHHHHHHHHHHHHC-CCCCCH-HH----HHHHHHHHHhc
Q 005178 316 QEMKSLGVQPNLVVY------NTLLEAM-----GKAGK---PGLARSLFDEMVES-GLTPDE-KT----LTALIKIYGKA 375 (710)
Q Consensus 316 ~~m~~~g~~p~~~~~------~~li~~~-----~~~g~---~~~A~~~~~~m~~~-g~~p~~-~~----~~~li~~~~~~ 375 (710)
.+-... +.+....+ ..++..- ....+ .+.|+.-++.+... +-.|.. .. ..-.+-++...
T Consensus 227 ~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 227 KENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 432211 00000000 0000000 00111 23344444444331 111221 11 12234456667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhCCCHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+++.++++.|+.+...+.+....+-.++.++|...+..++|+.+|..+..... ..++......|..+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 77777777777777776554555667777777777777777777777755321 02234445667777777777777
Q ss_pred HHHHHHHHHHcCC-------------CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 452 AIELFEEMSELGV-------------AINV-MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 452 A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
|..+++++.+... .||- ..+..++..+.-.|++.+|++.++++...... |......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 7777777766211 1222 23344556667777777777777777654322 5566777777777777
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD 563 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~ 563 (710)
.+.+|.+.++.+..+.|++..+...++......+ .+++|..++.+
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~-e~~~A~~~~~~ 509 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQ-EWHQMELLTDD 509 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 7777777777777777777766666665555444 45555555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-16 Score=155.62 Aligned_cols=440 Identities=13% Similarity=0.058 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST-IITCAKRCNLFDEAIEWFERMYKTGLMP----DEVTYSA 262 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ 262 (710)
.+...|..-|..+....+|+..|+-+++...-|+.-.+.. +-..+.+...+.+|+++|+..+..-... .+...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3344456667888889999999999998877777655443 3347788889999999998877652211 2345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------CHHHH
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP------------NLVVY 330 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~ 330 (710)
+...+.+.|+++.|+.-|++..+. .|+..+-..|+-++...|+-++..+.|.+|......+ +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 777789999999999999999886 5888777777778888999999999999998643222 22222
Q ss_pred HHH-----HHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHH---H----------H--------HHHHHHHhcCCHHHHH
Q 005178 331 NTL-----LEAMGKAG--KPGLARSLFDEMVESGLTPDEKT---L----------T--------ALIKIYGKARWAKDAL 382 (710)
Q Consensus 331 ~~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~A~ 382 (710)
+.- +.-.-+.+ +.++++-.--+++.--+.|+-.. | . .-..-|.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 211 11111111 11222222222222222232110 1 0 1123467899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCAD--IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++++-+.+..-+.-...-+.|-..+.- -.++..|.++-+...... ..+......-.+.-...|++++|...|++.+
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 999988876433333333333333222 346778888777776655 4566555555555667899999999999998
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..+..-....|| +.-.+-..|++++|++.|-++... +.-+..+...+.+.|....+...|++++.++..+-|+++.++
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHH
Confidence 743221222233 334567889999999999887643 223566777888899999999999999999999999999999
Q ss_pred HHHHhhcCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhcccc
Q 005178 541 NLIEDNSTGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRS 619 (710)
Q Consensus 541 ~~L~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 619 (710)
.-|+..|...|+..++....++....-|. ..+...|...|....-.++|+.+|+++. +...+...|..++..
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa-------liqp~~~kwqlmias 668 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-------LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-------hcCccHHHHHHHHHH
Confidence 99999888888777777777887766554 4466677777777788899999999864 233367889988777
Q ss_pred c--ChHHHHHHHHHHHHHHHHHH
Q 005178 620 L--SVGAAQTALEEWMWTLAKIV 640 (710)
Q Consensus 620 ~--~~G~~~~Al~~~~~~~~~~~ 640 (710)
+ ..|+++.|++.+...-|+.+
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCc
Confidence 5 34999999999877655543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-14 Score=155.01 Aligned_cols=430 Identities=11% Similarity=0.043 Sum_probs=314.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 158 LLILNSLKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 158 ~~~l~~l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
..+...-+++..|+..|+.+.+.. +.+ ..++ .++..+...|+.++|+..+++.... ..........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 344555667999999999998764 222 2344 8888899999999999999999832 1122333334455888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999998644 5777788899999999999999999999876 4666666556555655777777999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--hcCC---HHHHH
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL------TALIKIY---G--KARW---AKDAL 382 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~li~~~---~--~~g~---~~~A~ 382 (710)
++.+.. +-+...+..++.++.+.|-...|.++..+-... +.+...-+ ..++..- . ...+ .+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999874 336777888999999999999998777654321 11111001 1111100 0 1122 34555
Q ss_pred HHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 005178 383 ELWERMREN-KW-PMDFILY----NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELF 456 (710)
Q Consensus 383 ~~~~~m~~~-~~-~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 456 (710)
.-++.+... +. ++....| .-.+-++...|++.++++.|+.+...+. +.-..+-..+.++|...++.++|..+|
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 556665542 11 2222222 2335567889999999999999998874 334557889999999999999999999
Q ss_pred HHHHHcC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHhcC
Q 005178 457 EEMSELG-----VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-------------VKPDDR-LCGCLLSVVSLCE 517 (710)
Q Consensus 457 ~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~-~~~~ll~~~~~~g 517 (710)
.++.... ..++......|.-+|...+++++|..+++.+.+.. ..||-. .+..++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9997643 12345556889999999999999999999998721 223333 3334567788899
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCChh-hHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDARRP-FCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
+..+|++.++++....|.+..+...++..+...| +..+|++.++.. ...|+.. +.-.++.++...|++++|.++.+.
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg-~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARD-LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999999999999988888777667 788888888764 4566654 566788888999999999998876
Q ss_pred HHH
Q 005178 596 GTL 598 (710)
Q Consensus 596 ~~~ 598 (710)
..+
T Consensus 510 l~~ 512 (822)
T PRK14574 510 VIS 512 (822)
T ss_pred HHh
Confidence 543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-14 Score=152.35 Aligned_cols=425 Identities=13% Similarity=0.091 Sum_probs=324.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIE--LDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
+..+++.+..+-..+ +.|+.+.+.|...|...|++..++.+...+...... .-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 778888888776654 456677899999999999999999999999876321 1234577888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG----DYDGIRYVLQEMKS 320 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 320 (710)
|.+..+....--+..+..|...|.+.|+++.+...|+.+.+.. +-+..+..+|...|...+ ..+.|..++.+..+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9888776322124456678899999999999999999998863 445677778888887775 56778888887776
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 005178 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV----ESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN---KW 393 (710)
Q Consensus 321 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 393 (710)
.- +.|...|-.+...+-.. +...++.+|.... ..+..+-....|.+...+...|++++|...|...... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 53 44777888777776554 4444477666544 4555677889999999999999999999999988765 12
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC
Q 005178 394 PMD------FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 394 ~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 467 (710)
.+| ..+-..+...+-..++.+.|.++|..+.+.. +--+..|..++.+-...++..+|...+.+....+- .|
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~n 563 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SN 563 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CC
Confidence 222 2234446677778889999999999999875 44566677776555567888999999999887533 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHhCC
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSVVSL------------CETSEDVGKVITCLQQANP 534 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p 534 (710)
...++-+...+.+...+.-|.+-|+...+. ...+|.....+|.+.|.+ .+..+.|.++|.++.+.+|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 777777888888888898898877777633 334677777777876664 3456788899999999999
Q ss_pred cHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC--CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD--ARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 535 ~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
.+..+.+.+|.+++..| .+.+|..+|.+.... ....+|-.++.+|..+|++..|+++|+..+..-
T Consensus 644 kN~yAANGIgiVLA~kg-~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKG-RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred chhhhccchhhhhhhcc-CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988899988888767 778888888775432 233488899999999999999999999876543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-13 Score=132.93 Aligned_cols=393 Identities=19% Similarity=0.188 Sum_probs=224.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHH-HHHHHHHHHcC-----------
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAKRCNLFDEA-IEWFERMYKTG----------- 252 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A-~~~~~~m~~~g----------- 252 (710)
+.+-|.|+.+ ...|.+.++.-+|+.|...|+..+...-..|+. +|....++--| .+.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4445555554 345667777777777777776666655555544 22222222111 22333333222
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 253 --------LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324 (710)
Q Consensus 253 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (710)
.+-+..+|..||.++|+-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 122556777777777777777777777777766666777777777776543222 26677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC-
Q 005178 325 PNLVVYNTLLEAMGKAGKPGL----ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD-ALELWERMRE----NKWP- 394 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~- 394 (710)
||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 777777777777777776654 45566777777777777777777777777666533 3444444332 1121
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 395 ---MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY---CKPD---NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 395 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
-|...|...+..|....+.+-|.++..-...... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 1344555666667777777777776665544221 1222 233556666677777777777777777766566
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH---HHHHH
Q 005178 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV---AFLNL 542 (710)
Q Consensus 466 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~ 542 (710)
|+..+...++++..-.|+++-.-+++..++..|-..+...-..++..++... .+|+.. .+-..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k--------------~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK--------------LHPLTPEREQLQVA 496 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC--------------CCCCChHHHHHHHH
Confidence 6777777777777777777777777777766554322222222222222111 123211 22222
Q ss_pred HHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 543 IEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 543 L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
.+.+-+...+..+.+..-+.+.... ....+..+-.+.+.|+.++|.++|......+
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2222111111222222222221222 2245666667889999999999998875544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-11 Score=126.98 Aligned_cols=468 Identities=12% Similarity=0.061 Sum_probs=354.0
Q ss_pred CCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 148 IPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227 (710)
Q Consensus 148 ~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~ 227 (710)
+...+..+++-.-.-.+...+.|..+.-...+. .+.++..|--.++.= .+...=.+++++.++. ++-++..|-.
T Consensus 312 Ce~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~--~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKa 385 (913)
T KOG0495|consen 312 CEECPRSEDVWLEAIRLHPPDVAKTVVANAVRF--LPTSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKA 385 (913)
T ss_pred HhhCCchHHHHHHHHhcCChHHHHHHHHHHHHh--CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHH
Confidence 333343333333333344455555555444433 344444443332221 2223335666666665 3335556644
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 307 (710)
.+ .....+.|.-++.+..+.- ..+...| -+|.+..-++.|.++++...+. ++.+...|.+-...--..|.
T Consensus 386 AV----elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 386 AV----ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HH----hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence 44 4466677888888888752 2244444 4566778899999999999875 67888999888888888999
Q ss_pred HHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 005178 308 YDGIRYVLQEM----KSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 308 ~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 381 (710)
.+...+++++- ...|+..+..-|-.=...|-..|..-.+..+....+..|+... ..||..-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 99999888764 4578888999999889999999999999999999888876543 56888899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+.+|...++- ++-+...|...+..--..|..++-..+|++....- +.....|.....-+...|++..|..++.++.+
T Consensus 536 rAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 536 RAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999876 34477888888888888999999999999998864 66777888888889999999999999999998
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.... +...|-+-+........++.|..+|.+... ..|+..+|.--+....-.++.++|.+++++..+..|+..-++-
T Consensus 613 ~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~l 689 (913)
T KOG0495|consen 613 ANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWL 689 (913)
T ss_pred hCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHH
Confidence 6544 678899999999999999999999998765 5678888888888888899999999999999999999999999
Q ss_pred HHHhhcCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc
Q 005178 542 LIEDNSTGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL 620 (710)
Q Consensus 542 ~L~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 620 (710)
++|..+.+.++.-.....|......-|. .+.|-.|...--+.|.+-+|+.+|+++.-.+ +++..-|-..++.-
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN------Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN------PKNALLWLESIRME 763 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC------CCcchhHHHHHHHH
Confidence 9998877666444444556666777665 4589999999999999999999999876332 23677888776663
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHhc
Q 005178 621 -SVGAAQTALEEWMWTLAKIVLRE 643 (710)
Q Consensus 621 -~~G~~~~Al~~~~~~~~~~~~~~ 643 (710)
..|+.+.|-...-+.+++....|
T Consensus 764 lR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHcCCHHHHHHHHHHHHHhCCccc
Confidence 56888888777766666554444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-11 Score=122.43 Aligned_cols=435 Identities=13% Similarity=0.074 Sum_probs=345.8
Q ss_pred CCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHH----HHCCCCCCHHHHH
Q 005178 151 QPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEM----VSNEIELDNITYS 226 (710)
Q Consensus 151 ~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~~~~ 226 (710)
.+...+....|..+..++.|..+++.+++. ++.+..+|-+-...=-.+|+.+...+++++- ...|+..+...|-
T Consensus 406 cp~s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 406 CPQSMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 444455555666666789999999999887 6788888988888888899999999887764 4568888999998
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
.=...|-..|..--+..+....+..|+.- -..||+.-...|.+.+.++-|..+|...++- .+.+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence 88888989999999999998888887753 2568999999999999999999999999875 35567888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|..++...+|++.... ++-....|-....-+-..|+...|..++.+..+.. +-+...|-+-+.....+..++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999999885 34455677777888888999999999999999874 34678898899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
|.+.... .++..+|.--+...-..++.++|.+++++..+.- +.-...|..+.+.+-+.++++.|...|..-.+. .
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 9998864 5677777776777777899999999999998864 445678889999999999999999988776553 2
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+-....|..|...--+.|.+-.|..++++....+.+ +...|...+.+-.+.|+.+.|..++.++.+.-|+..-.+.--.
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 224567777878888899999999999999877655 6778999999999999999999999999998888765542222
Q ss_pred hhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 545 DNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.. ...++.......-+++-..+| .+.-+....++...+++.|++.|+++...
T Consensus 795 ~l-e~~~~rkTks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 795 WL-EPRPQRKTKSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred Hh-ccCcccchHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 21 111223333444444444444 35557777788888999999999988744
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-12 Score=139.44 Aligned_cols=445 Identities=13% Similarity=0.069 Sum_probs=311.7
Q ss_pred HHhhCCCCCCHHHHHHHHHhc----cCHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 005178 144 AITEIPHQPTRENALLILNSL----KFWQKSYFFFNWIKSQNLFP-METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218 (710)
Q Consensus 144 ~l~~~~~~~~~~~~~~~l~~l----~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 218 (710)
+..++...+....++..|... +++..+..+.+-+....... --...|--+.++|-..|++++|...|.+....
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-- 336 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-- 336 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--
Confidence 334555555555554444333 25777777777666543111 12345778999999999999999999887765
Q ss_pred CCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCH
Q 005178 219 ELDNITY--STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----KVEEVLSLYERGVASGWKPDP 292 (710)
Q Consensus 219 ~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~ 292 (710)
.+|.+++ --+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..++.+..+.- +.|.
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 4555444 4566789999999999999999988742 25677888888887775 5677777777777653 5677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH---
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMK----SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPDE--- 362 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~--- 362 (710)
..|-.+..+|-...-+.. +.+|.... ..+-.+.....|.+...+...|+++.|...|...... ...++.
T Consensus 415 ~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 888877777765544433 66665543 4555678889999999999999999999999988754 122333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 363 ---KTLTALIKIYGKARWAKDALELWERMRENKWPMD-FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 363 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
.+--.+...+-..++.+.|.+.|..+.+.. |. +..|..++.+.-..+...+|...+......+ ..++..++.
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl 569 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSL 569 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHH
Confidence 222235666677789999999999998762 23 2334444433444577889999999988876 566777777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSEL-GVAINVMGCTCLIQCLGK------------ARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
+.+.|.+...+..|.+-|..+.+. ...+|..+..+|.+.|.+ .+..+.|+++|.+.+....+ |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 888888888888888877766553 223577777777765542 34567888888888875433 5556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHH---HhccCCCChhhHHHHHHHHHh
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVI---KDTEVDARRPFCNCLIDICRN 582 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~l~~~~~~ 582 (710)
-|.+.-+++..|++.+|..+|.++.+..-+...++-.|+.|+...|++..++.-|- ++.....+..+...|..++.+
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 67778888899999999999999887665666677777777776674444333332 223334456688889999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 005178 583 RNLNERAHELLYLGTL 598 (710)
Q Consensus 583 ~g~~~~A~~~~~~~~~ 598 (710)
.|.+.+|.+.+..+..
T Consensus 729 ~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARH 744 (1018)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999888877653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.5e-12 Score=123.65 Aligned_cols=330 Identities=13% Similarity=0.082 Sum_probs=251.5
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD--EVTY 260 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~ 260 (710)
...|.+.+-.....+.+.|....|++.|...+.. -+..|.+.+....-..+.+.+. .... |...| ...=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHH
Confidence 4567777777777888999999999999888765 2233444443322223333332 2222 22212 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV--QPNLVVYNTLLEAMG 338 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~ 338 (710)
-.+..+|....+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... --|..+|..++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 345567777789999999999999998877777777777778889999999999999998631 126678887765543
Q ss_pred HcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 339 KAGKPG-LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 339 ~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
...++. -|..++. + . +--..|+.++...|+-.++.++|...|++..+.+.. ....|+.+.+-|....+...|+
T Consensus 311 ~~skLs~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhHHHHHHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 322221 1222221 1 1 223468888999999999999999999999987655 5678999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+-++...+.+ +.|-..|..|.++|...+...-|+-.|++..+... .|...|.+|..+|.+.++.++|++.|.+....
T Consensus 385 ~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999876 78999999999999999999999999999998543 27899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 498 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|-. +...+..|...|.+.++.++|.++|++..+
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 643 567899999999999999999999988755
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-11 Score=120.66 Aligned_cols=240 Identities=17% Similarity=0.287 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+..+|.+||.++++--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 67899999999999999999999999998887788999999999775432 33789999999999999999999999
Q ss_pred HHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC--C--CC----CCHHHHHH
Q 005178 301 MFGESGDYDG----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL-ARSLFDEMVES--G--LT----PDEKTLTA 367 (710)
Q Consensus 301 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~----p~~~~~~~ 367 (710)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | ++ .|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998875 56788999999999999999999999999887644 55555555432 2 22 24556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENK----WPMD---FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
-+..|....+.+-|.++..-+.... +.|+ .+-|..+..+.|+....+.-...|+.|.-.-. -|+..+...++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y-~p~~~~m~~~l 440 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY-FPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-cCCchhHHHHH
Confidence 8888999999999999887765421 2233 33566788888999999999999999987664 68899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 441 NIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
++....|.++-.-+++..+...|..
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhh
Confidence 9999999999999999999886543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-13 Score=131.61 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAI 242 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~ 242 (710)
..+|+..++-+.+..-++.....--.+...+.+.+.+.+|++.|+-.+..-...+ ....+.+-..+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 4556666665554433332223333345566777777788877766665421111 123444444566777888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 243 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 285 (710)
.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 777776665 46665555555555566777777777777764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-10 Score=111.57 Aligned_cols=420 Identities=13% Similarity=0.129 Sum_probs=316.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEAI 242 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~ 242 (710)
.+++..|..+|+++.... ..+...|--.+.+=.++.++..|..+++..+.. -|-+ ..|--.+..--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345788999999988764 567888999999999999999999999999875 2333 34555555556689999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 005178 243 EWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL- 321 (710)
Q Consensus 243 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 321 (710)
++|++..+- .|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--....--++|....|..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998875 899999999999999999999999999999874 599999999999999999999999999988763
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCH---HHHHH-----HHHHHHh
Q 005178 322 GV-QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWA---KDALE-----LWERMRE 390 (710)
Q Consensus 322 g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~ 390 (710)
|- .-+...+++...--.++..++.|..+|+-.++. ++.+ ...|..+...--+-|+. ++++- -|+.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 112234555555555678899999999988875 2333 34455555444455553 33332 2444554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHH--------HHhCCCHHHHHHHHHHHH
Q 005178 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN--YSYTAMLNI--------YGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 391 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~m~ 460 (710)
.+ +-|-.+|--.+..-...|+.+...++|++.+..- +|-. ..|...|.. -....+++.+.++|+..+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 43 3377778888888888999999999999998754 4532 222222211 124688999999999998
Q ss_pred HcCCCcCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 461 ELGVAINVMGCTCLIQCL----GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+. ++....||..+--.| .++.++..|.+++...+ |.-|...+|...|..-.+.+.++...++|++..+..|.+
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 83 344455655554444 57889999999998864 577889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHhccCCC--Chh--hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTEVDA--RRP--FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 537 ~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
-..+.-++......| ..+.+..++.-.-.+| |.+ .|.+.|+.-...|.+++|+.++++.+..
T Consensus 471 c~~W~kyaElE~~Lg-dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 471 CYAWSKYAELETSLG-DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred hHHHHHHHHHHHHhh-hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 887776666544445 5566777776544444 333 7999999999999999999999987644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-10 Score=123.96 Aligned_cols=358 Identities=13% Similarity=0.085 Sum_probs=270.0
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEW 244 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 244 (710)
++.++|..++..++++. +.+...|..|..+|-..|+.+++...+-...... +-|...|..+.....+.|++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 67999999999999884 6788899999999999999999998876666553 33678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS----VLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
|.+.++.... +...+---+..|-+.|+...|..-|.++....-+.|..-+. .++..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998543 55566666788999999999999999998864222222222 345566777888999999988876
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHH
Q 005178 321 LG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT---------------------------PDEKTLTALIKIY 372 (710)
Q Consensus 321 ~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~~~~~li~~~ 372 (710)
.+ -..+...++.++..+.+...++.|......+...... ++..+ .-++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 22 2345567889999999999999999988888762212 22222 1122233
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 373 GKARWAKDALELWERMRENK--WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
......+....+.....+.+ +.-+...|.-+..+|.+.|++.+|..+|..+..... -.+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHH
Confidence 34444444444444445544 344567889999999999999999999999998764 456789999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI--------DRGVKPDDRLCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~g~~~~a 522 (710)
+|...|+..+..... +...-..|...+.+.|+.++|++.++.+. ..+..|+..........+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999885322 45566677778999999999999999864 234556666666777788889998876
Q ss_pred HHHHHHH
Q 005178 523 GKVITCL 529 (710)
Q Consensus 523 ~~~~~~~ 529 (710)
+.....+
T Consensus 546 i~t~~~L 552 (895)
T KOG2076|consen 546 INTASTL 552 (895)
T ss_pred HHHHHHH
Confidence 5544433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-12 Score=130.96 Aligned_cols=281 Identities=9% Similarity=0.049 Sum_probs=119.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 005178 200 GRQFQLIEQLANEMVSNEIELDNITYSTI-ITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY--SAILDVYAKSGKVEEV 276 (710)
Q Consensus 200 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A 276 (710)
.|+++.|++.+....+.. ++...+..+ ..+..+.|+++.|.+.|.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 356666665555444321 111222122 22335556666666666555543 2232211 1224455555666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 005178 277 LSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL-------VVYNTLLEAMGKAGKPGLARSL 349 (710)
Q Consensus 277 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 349 (710)
...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66665555543 334455555555555556666666555555554322111 0111222222222223333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 005178 350 FDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC 429 (710)
Q Consensus 350 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 429 (710)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+..
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 3333221 1223334444444444444444444444444432 1222111 1112222344444444444444333
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+.|...+..+...|.+.|++++|.+.|+.+.+ ..|+...|..+...+.+.|+.++|..++++.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444444444444 2344444444444444444444444444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=128.64 Aligned_cols=131 Identities=11% Similarity=-0.082 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS--YTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGC 471 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 471 (710)
+...+..+...+...|+.++|.+++++..+.. +.+... ...........++.+.+.+.++...+.... |. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHH
Confidence 44455555555555555555555555555543 111110 011111122234555555555555543211 22 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
.++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555556666666666666664333334555555556666666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-11 Score=118.43 Aligned_cols=219 Identities=14% Similarity=0.066 Sum_probs=174.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++....|++....+ +-|+.+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHH
Confidence 4457888899999999988765543 337777888999999999999999999887 6788899999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|..=|++.+..... +...|..+.-+.-+.+++++++..|++.+++ +.--...|+-...++...++++.|.+.|+.+..
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999985433 5677777777778899999999999999865 333456889999999999999999999999999
Q ss_pred hCCcHH------H-HH-HHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 532 ANPKLV------A-FL-NLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 532 ~~p~~~------~-~~-~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+.|... . .+ ..+... ...+...+|..++.+ +..+|.-. .|.+|+..-...|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL--QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhh--chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888722 1 11 111111 123466777887765 56777654 78999999999999999999999865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.6e-12 Score=131.90 Aligned_cols=285 Identities=11% Similarity=-0.021 Sum_probs=161.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNL-VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE--KTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A 381 (710)
.|+++.|.+.+.+..+. .|+. ..+-....++.+.|+++.|.++|.+..+.. |+. .........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555554443 2222 222333444455555555555555554431 222 1222234455555666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA----MLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 457 (710)
...++.+.+.... +...+..+...|...|++++|.+++..+.+.+. .+...+.. ....+...+..+++...+.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666555322 445555556666666666666666666665542 22222211 0111122222222233333
Q ss_pred HHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 458 EMSELGV---AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL-CGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 458 ~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
.+.+... +.+...+..++..+...|+.++|.+++++..+......... ...........++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3333221 12667777777777778888888888777776432211111 1111112233466777888888888888
Q ss_pred CcHH--HHHHHHHhhcCCcccHHHHHHHHHH---hccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 534 PKLV--AFLNLIEDNSTGFENIKEEFRNVIK---DTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 534 p~~~--~~~~~L~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
|++. .+.+.||+.+...+ ..++|.++++ .....|+...+..++..+.+.|+.++|.+++++.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~-~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHG-EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcc-cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888 78888888776666 6777777877 45668888888899999999999999999999864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-11 Score=117.57 Aligned_cols=350 Identities=12% Similarity=0.071 Sum_probs=252.4
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHH-HHHHHHHcCC
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYST-IITCAKRCNL 237 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~-li~~~~~~g~ 237 (710)
++...+....|+..|...... .|..-.+|-.|.... -+.+.+..+ .. |...| ...-.. +..++....+
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHHHHHHHHHHHHHH
Confidence 445556678888888776544 343444444444333 233333222 21 12212 222222 2336777778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW--KPDPIAFSVLGKMFGESGDYDG-IRYV 314 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~-A~~~ 314 (710)
.+++..-.+.....|..-+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.--.+.++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 899999888888888775555555555666678899999999999998731 1256778777644333222221 2222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
+ .+- +--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+.+-|....+...|++-|+..++.+..
T Consensus 323 ~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 323 S-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred H-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 2 111 2345577788888999999999999999999875 445678999999999999999999999999997544
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
|-..|..|.++|.-.+...=|+-.|++..+.. +.|...|.+|.++|.+.++.++|++.|.+....|-. +...+..|
T Consensus 397 -DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 397 -DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred -hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 88999999999999999999999999999876 678999999999999999999999999999987643 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSID----RGVKPD-DR-LCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
.+.|-+.++.++|...|++-++ .|..-+ .+ ...-|..-+.+.+++++|..+-...
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999999999988775 233323 22 2223555667788888887654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-11 Score=126.99 Aligned_cols=283 Identities=10% Similarity=0.042 Sum_probs=219.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVT-YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS--VLGKMFGESGDYDGI 311 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A 311 (710)
.|++++|.+.+....+.. ++... |.....+..+.|+++.|...|.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 12333 333345558899999999999999875 46654333 346788999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 005178 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE-------KTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 384 (710)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 346778889999999999999999999999987654322 1333344444445556666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7766443 3447888889999999999999999999999874 4555322 33444466999999999999988654
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
. |...+..+...|.+.|++++|.+.|+.+.+ ..|+...|..+..++.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 677788999999999999999999999987 578999999999999999999999999987754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=133.37 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=192.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVLGKMFGESGDYDGIRYV 314 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 314 (710)
+..+|+..|..+.+.- .-+..+...+..+|...+++++|+++|+.+.+.. .--+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4567777777755442 2234566677778888888888888888877642 112456666666544321 11222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 315 L-QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 315 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+ +++.+. -+-.+.+|-++.++|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 122221 13356678888888888888888888888877653 22566777777777777788888888887766522
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 473 (710)
+ +...|.-+.-.|.+.++++.|+-.|+...+.+ +.+.+....++..+.+.|+.|+|+++++++...+.+ |...--.
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 2 23334445667778888888888888887766 567777777777888888888888888888775554 4444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+..+...+++++|+..++++.+ +.|+.. ++..+...|.+.|+.+.|..-|.-+..++|.-..
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 55666777888888888888776 455544 5666777788888888888777777777775443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-10 Score=122.36 Aligned_cols=340 Identities=12% Similarity=0.114 Sum_probs=245.1
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
|.+...-...+.+...|++++|.+++.++++.. +.+...|.+|..+|-..|+.+++...+-.+...... |...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 333333334444555699999999999999874 346789999999999999999999877655544433 778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHc
Q 005178 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV----VYNTLLEAMGKA 340 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~ 340 (710)
....+.|+++.|.-.|.++++.. +++...+---+..|-+.|+...|..-|.++.+...+.|.. ..-.++..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999874 4555555566778999999999999999999863222222 223346667777
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------------------------
Q 005178 341 GKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-------------------------- 393 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------------------- 393 (710)
++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 88899999998887631 234556788899999999999999888887765221
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH
Q 005178 394 -PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC 471 (710)
Q Consensus 394 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 471 (710)
.++..+. .+.-++......+....+.....+... ..-+...|.-+.++|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 2222221 122233334444444444444444331 1344567888888888999999999999888876555567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
-.+..+|...|.+++|++.|+..+.. .|+. ..-..|...+.+.|+.++|.+.++.+.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 88888888899999999998888763 3432 344467777888888888888887765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=141.12 Aligned_cols=258 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASG-WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
...+.+.|++++|+++++...... -+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332221 1223333333444444455555555555555443311 23334444443 45555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK-WPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
+++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555444332 1333344445555555555555555555544321 22344455555555555555555555555
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+..+.. |.|......++..+...|+.+++..++....+.. +.|...|..+..+|...|+.++|+.+|++...... .
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 555544 3345555555555555555555555555554432 22334455555555555556666655555554221 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
|..+...+..++.+.|+.++|.++.+++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4444445555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-14 Score=141.93 Aligned_cols=249 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 297 VLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|+..++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55778889999999999996654433 233455666677777788999999999999987652 255567777776 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
+++++|.+++....+.. ++...+..++..+...++++++.++++.+......+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776553 4566677888889999999999999999876553356788899999999999999999999
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 456 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+++.++.... |......++..+...|+.+++..+++...+.. ..|...+..+..+|...|+.++|..+|++..+.+|+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999885432 57788889999999999999888888887543 334557788899999999999999999999888887
Q ss_pred HHHHHHHHHhhcCCcc
Q 005178 536 LVAFLNLIEDNSTGFE 551 (710)
Q Consensus 536 ~~~~~~~L~~~~~~~~ 551 (710)
+..+...++.++...|
T Consensus 247 d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 247 DPLWLLAYADALEQAG 262 (280)
T ss_dssp -HHHHHHHHHHHT---
T ss_pred cccccccccccccccc
Confidence 7766655555444333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-11 Score=113.56 Aligned_cols=267 Identities=18% Similarity=0.223 Sum_probs=165.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHH
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL------VVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~ 344 (710)
++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..|.|+++.+.+.+. ||. .+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34444444444444421 112223334444455555555555555544442 221 12333555566666677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Q 005178 345 LARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF----ILYNTLLNMCADIGLVEEAERLF 420 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 420 (710)
.|+.+|..+.+.+ ..-......|+..|-...++++|+++-+++.+.+..+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777776666543 223345556677777777777777777776665544332 23555556666677888888888
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 421 EDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK 500 (710)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 500 (710)
.+..+.+ +..+..-..+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++.+..+.++.+....
T Consensus 204 ~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8888766 55666666777888888888888888888888665555677888888888889988888888888875444
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 501 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++.. ..+...-....-.++|..++.+-.+.+|+...+..++..-
T Consensus 282 ~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 282 ADAE--LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYH 325 (389)
T ss_pred ccHH--HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhh
Confidence 4433 2333333333444677777777777778777777666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=132.84 Aligned_cols=265 Identities=14% Similarity=0.131 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG--VQPNLVVYNTLLEAMGKAGKPGLARSL 349 (710)
Q Consensus 272 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 349 (710)
+..+|+..|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 467788888885443 33344666677888888888888888888887642 1125567777665543221 1222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005178 350 F-DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428 (710)
Q Consensus 350 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (710)
+ +++.+.. +-...+|.++...|.-.++.+.|++.|++....+.. ...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2222221 335677888888888888888888888887765322 56677777777777777888888888777544
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
+.+..+|..|...|.+.++++.|.-.|+.+.+-+.. +.+....+...+-+.|+.|+|+++|+++...+.+ |...-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHH
Confidence 345556666777788888888888888877774332 4555566666777778888888888877764433 3333333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
.+..+...+++++|.+.++++.++-|+...+..++|..+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 455566677777787777777777777666655555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-09 Score=102.68 Aligned_cols=433 Identities=14% Similarity=0.129 Sum_probs=316.5
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD-EVTYSAI 263 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 263 (710)
.+...|--...-=-.++++..|..+|+..+.... .+...|--.+.+-.++..+..|..++++.+.. -|. ...|.-.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 4556666666666778899999999999998653 36677888888888999999999999999875 333 3456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP 343 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 343 (710)
+.+=-..|++..|.++|++-.+ +.|+...|++.|+.-.+...++.|..++++..- +.|++.+|--...--.+.|..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence 6666778999999999999887 589999999999999999999999999999987 479999999999988999999
Q ss_pred HHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 005178 344 GLARSLFDEMVES-GL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 344 ~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
..|..+|...++. |- .-+...+.++...-.++..++.|..+|+..++. ++-+ ...|..+..---+-|+....++.
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999988764 21 123445566666666778899999999999876 3333 45566666555566765444433
Q ss_pred --------HHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHH--------HHHhc
Q 005178 420 --------FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGCTCLIQ--------CLGKA 481 (710)
Q Consensus 420 --------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~ 481 (710)
++.+...+ +.|-.+|--.+..-...|+.+...++|++++.. ++|-. ..|...|- .-...
T Consensus 303 Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555 678899999999999999999999999999875 44421 12222221 11357
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHH----HHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDD-RLCGCLL----SVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~ 556 (710)
.+.+.+.++|+..++ +.|.. .||.-+- ..-.++.+...|.+++..+.+.-|.+..|-..+--. ...+ ..+.
T Consensus 380 ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE-lqL~-efDR 455 (677)
T KOG1915|consen 380 EDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE-LQLR-EFDR 455 (677)
T ss_pred hhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH-HHHh-hHHH
Confidence 889999999999988 45543 3444333 334468889999999999999999887765443221 1112 3445
Q ss_pred HHHHHHh-ccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHH
Q 005178 557 FRNVIKD-TEVDARR-PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWM 633 (710)
Q Consensus 557 a~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~ 633 (710)
...++++ +...|.. .+|.-....-...|+.++|+.+|+.++.... +.. -...|...|..- +.|..+.|-.++.
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---ldm-pellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---LDM-PELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc---ccc-HHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 5556655 4556654 3788888888899999999999999874432 222 235677665553 5677777777775
Q ss_pred HHH
Q 005178 634 WTL 636 (710)
Q Consensus 634 ~~~ 636 (710)
.-+
T Consensus 532 rlL 534 (677)
T KOG1915|consen 532 RLL 534 (677)
T ss_pred HHH
Confidence 533
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-10 Score=107.34 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=177.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP------IAFSVLGKMFGESGDY 308 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~ 308 (710)
.++.++|+++|-+|.+.... +..+.-+|.+.|.+.|.++.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46677777777777764322 4455566777777777788888777777764 442 2334566667777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE----KTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~ 384 (710)
|.|+.+|..+.+.| ..-......|+..|-...+|++|+++-+++...+-.+.. ..|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888877644 223445667778888888888888888777766544332 2345555555566778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
+.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+. ..-..+...|..+|.+.|+.++...++.++.+...
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNP-EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8887776433 334444566777788888888888888887763 33455677788888888888888888888877433
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (710)
+...-..+...-....-.+.|..++.+-+. -+|+...+..++..-.
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHL 326 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhh
Confidence 333333343333444445566666555444 3678877777776544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-10 Score=109.73 Aligned_cols=295 Identities=12% Similarity=0.067 Sum_probs=202.9
Q ss_pred HHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 191 NVTMKSLR--FGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 191 ~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
..+..++. -.|+|.+|+++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 34444443 358888888888887776533 233444445577778888888888888887644556777777788888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHcC
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV-------VYNTLLEAMGKAG 341 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~li~~~~~~g 341 (710)
..|+++.|..-.+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--+.. +|+.+++-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888888888888775 5567778888888888888888888888888877654442 4565655555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
..+.-...++..... .+-+...-.+++.-+.++|+.++|.++..+..+++..+.... .-.+.+.++.+.-++..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHH
Confidence 555544455554432 233444555667777778888888888887777766655211 223445666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
...+.. +.++..+.+|...|.+.+.+.+|...|+..++ ..|+..+|+.+..+|.+.|+..+|.+++++.+.
T Consensus 319 ~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 319 KWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 655543 34556777777778888888888888876665 457777788788888888888777777777653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-10 Score=109.92 Aligned_cols=293 Identities=13% Similarity=0.076 Sum_probs=192.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|+|..|+++..+-.+.+-. ....|..-+.+..+.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666655554422 22344444555555666666666666665542244445555555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-------NYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
..++.+.+.. +........++|.+.|++.....++..+.+.+.. .+ ..+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l-~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL-SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC-ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 6666655444 4555666666666666666666666666666542 22 2456666666666666666566666
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 458 EMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 458 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
+.... .+-+...-.+++.-+.++|+.++|.++.++..+.+..|+. +..-.+.+-++.+.-++..++..+..|+++
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 65432 3345666667777788888888888888888877776652 223345567777777888888888888888
Q ss_pred HHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCccc
Q 005178 538 AFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLH 606 (710)
Q Consensus 538 ~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 606 (710)
.....||+.+.+.+ .+.+|.++++. +...|+...|+-+.+++.+.|+.++|.++.++++..-..|+.+
T Consensus 329 ~L~~tLG~L~~k~~-~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 329 LLLSTLGRLALKNK-LWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred hHHHHHHHHHHHhh-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 88888887766655 55556666654 6788888999999999999999999999999987665555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-09 Score=109.11 Aligned_cols=376 Identities=12% Similarity=0.056 Sum_probs=252.6
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEA 241 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A 241 (710)
-+.+++|++++.|++.. .|| +..|.....+|...|+|+++.+--.+.++. .|+- ..+.--.+++-..|++++|
T Consensus 128 ~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 34699999999999875 566 888999999999999999999988888775 3442 3444445577777888777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH--------HHHHh-CC--CCCCHHHHHHHHHHHHh------
Q 005178 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY--------ERGVA-SG--WKPDPIAFSVLGKMFGE------ 304 (710)
Q Consensus 242 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~g--~~~~~~~~~~li~~~~~------ 304 (710)
+.=.. ..+++.++....-.-.+.+++ ++-.+ .+ +-|+.....+....+..
T Consensus 203 l~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 203 LFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 63221 112222221111111111221 11111 11 22333222222222110
Q ss_pred -------------------cC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 305 -------------------SG---DYDGIRYVLQEMKSL---GVQPN---------LVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 305 -------------------~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
.+ .+..|...+.+-... ....+ ..+...-..-+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 11 233333333222110 00111 111111122234468889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 005178 351 DEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430 (710)
Q Consensus 351 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 430 (710)
+..+.....++ ..|.-+..+|....+.++..+.|++..+.+.. |..+|..-.+++.-.+++++|..=|++.+... +
T Consensus 350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--p 425 (606)
T KOG0547|consen 350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--P 425 (606)
T ss_pred HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--h
Confidence 99998753333 23777888899999999999999999987655 67778888888888999999999999999876 6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHH-
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-----VKPDDR- 504 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~- 504 (710)
-+...|..+..+..+.++++++...|++.++. ++--..+|+-....+...++++.|++.|+..++.. +..+..
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 77888888888888999999999999999875 44467899999999999999999999999988632 111222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc
Q 005178 505 -LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT 564 (710)
Q Consensus 505 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~ 564 (710)
+.-+++..-. .+++..|.++++++.+++|.-..+...|+....+.| ..++|.++|++.
T Consensus 505 lV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~-~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG-KIDEAIELFEKS 563 (606)
T ss_pred hhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 2223332222 488999999999999999999999888887766667 778888888763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-10 Score=111.54 Aligned_cols=285 Identities=12% Similarity=0.027 Sum_probs=231.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 253 LMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332 (710)
Q Consensus 253 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (710)
..-+......-.+-|...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34466666677777888999999999999998874 6777778888889999999888888888888752 446679999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN--KWPMDFILYNTLLNMCADI 410 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~ 410 (710)
+.--|...|+..+|.+.|.+....+ +.=...|-.+...|+-.|.-|+|+..|...-+. |.. -+..| +.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHh
Confidence 9999999999999999999887542 112457888999999999999999988877653 221 12223 34457789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC----cCHHHHHHHHHHHHhcCCH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL--GVA----INVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~ 484 (710)
++++.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+++
T Consensus 394 ~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999998765 789999999999888999999999999988731 011 1345689999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++|+..|++.+....+ |..++.++.-.|...|+++.|+..|.+..-++|++.....+|+.+
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999976443 778999999999999999999999999999999998888888753
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-10 Score=121.76 Aligned_cols=246 Identities=13% Similarity=-0.026 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 342 KPGLARSLFDEMVESGLTPD-EKTLTALIKIYG---------KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
++++|..+|++..+. .|+ ...|..+..+|. ..+++++|...+++..+.+.. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 356777777777765 333 444544444433 224478899999988887544 6777888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++|+..|++..+.+ +.+...+..+...|...|++++|...++++.+.+.. +...+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999988876 567778888888999999999999999998885433 2223333444566788899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHH-HHHHHHHHhccCCCC
Q 005178 492 GVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIK-EEFRNVIKDTEVDAR 569 (710)
Q Consensus 492 ~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~-~~a~~~~~~~~~~~~ 569 (710)
+++.... .| +...+..+..++...|+.++|...++++....|+.......++..+...++.. .....+++.....+.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhc
Confidence 8887643 23 34456667778888999999999998888888888877777776655444321 123334444444554
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 570 RPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.+.+.. ..|.-+|+.+.+..+ +++.
T Consensus 509 ~~~~~~--~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 509 NPGLLP--LVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred CchHHH--HHHHHHhhhHHHHHH-HHhh
Confidence 444433 445667887777665 6544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-07 Score=95.50 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=142.7
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 155 ENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR 234 (710)
Q Consensus 155 ~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~ 234 (710)
.+.+.++...++....+..|+.+.....+.....+|...+......|-++.+..+|++.++- ++..-+.-|..++.
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 34455555555666666777666555445555566777777777777777777777766653 33335555555666
Q ss_pred cCCHHHHHHHHHHHHHc----------------------------------------CC--CCC--HHHHHHHHHHHHHc
Q 005178 235 CNLFDEAIEWFERMYKT----------------------------------------GL--MPD--EVTYSAILDVYAKS 270 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~----------------------------------------g~--~~~--~~~~~~li~~~~~~ 270 (710)
.+++++|.+.+...+.. |+ -+| ...|.+|.+.|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 66666665555544321 00 111 13477888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH------------------------------------------HHHHHH-------
Q 005178 271 GKVEEVLSLYERGVASGWKPDPIAF------------------------------------------SVLGKM------- 301 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~~~~~~~~------------------------------------------~~li~~------- 301 (710)
|.+++|..+|++.+..- .+..-| ..|++.
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 88888888887755321 010001 111100
Q ss_pred -H----------------HhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 005178 302 -F----------------GESGDYDGIRYVLQEMKSLG-----VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT 359 (710)
Q Consensus 302 -~----------------~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 359 (710)
+ ...|+..+-..+|.+..+.- +-.-...|..+...|-..|+++.|..+|++..+...+
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 0 11233444444555544320 0111235666677777777777777777776654322
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCC------CHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 360 PD---EKTLTALIKIYGKARWAKDALELWERMREN-----------KWPM------DFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 360 p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
-- ..+|......-.+..+++.|+++.+..... +.++ +...|...++..-..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 345555556666666677776666654321 1111 122344444444555666666666
Q ss_pred HHHHHhCCC
Q 005178 420 FEDMKLSDY 428 (710)
Q Consensus 420 ~~~~~~~~~ 428 (710)
++.+.+..+
T Consensus 500 YdriidLri 508 (835)
T KOG2047|consen 500 YDRIIDLRI 508 (835)
T ss_pred HHHHHHHhc
Confidence 666655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=106.72 Aligned_cols=196 Identities=13% Similarity=0.067 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444455555555555555555555554432 1233444445555555555555555555554432 2233344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 372 YGKARWAKDALELWERMRENKW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
+...|++++|.+.|++..+... ......+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence 4444555555555544443211 1112233333444444444444444444444332 223333444444444444444
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
+|...++++.+. ...+...+..++..+...|+.++|..+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444444332 11223333333333334444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-09 Score=104.33 Aligned_cols=445 Identities=14% Similarity=0.073 Sum_probs=264.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
++..|+-+-++.-.. ..|+..---+..+|.-.|+++.|..+...-.-. ..|..+......++.+..++++|..++
T Consensus 31 ~y~~a~f~adkV~~l---~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl 105 (611)
T KOG1173|consen 31 RYKTALFWADKVAGL---TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVL 105 (611)
T ss_pred hhhHHHHHHHHHHhc---cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666655555433 344444455778888888888888777654332 237777777777888888888888888
Q ss_pred HHHHHc--C-----------CCCCHHH----HHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 246 ERMYKT--G-----------LMPDEVT----YSAI-------LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301 (710)
Q Consensus 246 ~~m~~~--g-----------~~~~~~~----~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 301 (710)
...... + +.+|..- -+.- ...|....+.++|...|.+.+. .|+..|..+...
T Consensus 106 ~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~l 181 (611)
T KOG1173|consen 106 GRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKL 181 (611)
T ss_pred cccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHH
Confidence 722110 0 0111110 0111 1224444556777777776664 344444433322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 302 FGESGDYDGIRYVLQEMKSLGV----QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
-.. ..-.+.+.++.+..... .-+......+.....-...-+.....-.+..-.+...+......-.+-|...++
T Consensus 182 vs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~ 259 (611)
T KOG1173|consen 182 VSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCR 259 (611)
T ss_pred HHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcCh
Confidence 211 11112122222221100 001111111111110000000000000001111234455556666677778889
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
+.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.. |....+|-++.--|...|++++|.+.|.
T Consensus 260 f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 260 FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 999999999888763 3355555556668888888888777777887765 6677889999988888899999999998
Q ss_pred HHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 458 EMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDR--GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 458 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
+.... .|. ...|-.+...|+-.|..|.|+..+..+-+. |.. .-+--+..-|.+.++.+-|.++|.++..+.|
T Consensus 337 Kat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 337 KATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 87663 233 467888889999999999999888877643 222 1122344557778888999999999999999
Q ss_pred cHHHHHHHHHhhcCCcccHHHHHHHHHHhc-------cCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcc
Q 005178 535 KLVAFLNLIEDNSTGFENIKEEFRNVIKDT-------EVD-A-RRPFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGL 605 (710)
Q Consensus 535 ~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-------~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 605 (710)
.++-+.+-+|......+ ...+|..+++.. ..+ + -.++++.|+.+|++++++++|+..+++++..
T Consensus 412 ~Dplv~~Elgvvay~~~-~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l------ 484 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYE-EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL------ 484 (611)
T ss_pred CcchhhhhhhheeehHh-hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc------
Confidence 99888888876554434 444555544431 111 1 3456888999999999999999999987633
Q ss_pred cccccccchhcccccC-hHHHHHHHHHHHHHH
Q 005178 606 HNKTLDEWSLDVRSLS-VGAAQTALEEWMWTL 636 (710)
Q Consensus 606 ~~~~~~~w~~~~~~~~-~G~~~~Al~~~~~~~ 636 (710)
.++++..+..+.-.+. .|+.+.|++.+-+.+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2223333333322222 488888888776644
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-10 Score=121.13 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAK---------SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY 308 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 308 (710)
+++|+++|++..+.... +...|..+..+|.. .+++++|...++++++.. +-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666655322 33444444433332 123455555555555543 23444555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 55555555555542 1233345555555555555555555555555442 22 11222223333444555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+.+...+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 5443212123334444445555555555555555544322 122233333333444444 24444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=109.12 Aligned_cols=205 Identities=14% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 334 LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413 (710)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (710)
..+|.+.|.+.+|.+.|+.-++. .|-..||..|-++|.+..+.+.|+.+|.+-.+. ++-|+....-+...+...++.
T Consensus 230 gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhH
Confidence 33344444444444444433333 233334444444444444444444444444443 222333333344444445555
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 414 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
++|.++++...+.. +.++.....+...|.-.++.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|-++..|++
T Consensus 307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555555555544 345555555555566666666666666666666654 556666666666666666666666666
Q ss_pred HHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 494 SIDRGVKPDD--RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 494 m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
.+..--.|+. .+|..+.......|++.-|.+.|+-....+|++...++.|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 5543333332 24555555555566666666666555555555544444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-09 Score=104.54 Aligned_cols=197 Identities=16% Similarity=0.086 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
..+..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555544432 2233444444455555555555555555544432 12333444444455
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
...|++++|.+.|++...... ......+..+...+...|++++|...+.+..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443211 112223334444445555555555555554443211 333444444555555555555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
...+++..+.. +.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555544432 233444444444444555555555544444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-07 Score=93.24 Aligned_cols=431 Identities=12% Similarity=0.102 Sum_probs=284.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSN-EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 266 (710)
..|-..+..+.++|++......|+..+.. -+......|...+......+-++-++.+|++.++. +...-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56888888999999999999999998765 22234467999999999999999999999999875 55557788888
Q ss_pred HHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHCCCCCCH--HHHHHHHH
Q 005178 267 YAKSGKVEEVLSLYERGVASG------WKPDPIAFSVLGKMFGESGDYDGI---RYVLQEMKSLGVQPNL--VVYNTLLE 335 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~p~~--~~~~~li~ 335 (710)
+++.+++++|-+.+...+... .+.+...|.-+-+..++.-+.-.. ..+++.+... -+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 999999999999998876431 245667788777777766554333 3344444332 3444 37899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHhCCC
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR----------------------WAKDALELWERMRENKW 393 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~~~ 393 (710)
-|.+.|+++.|..+|++.+.. ..+..-|+.+.++|++-. +++-.+.-|+.+.+.+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999998875 334445555555554321 12233334444443211
Q ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 394 -----------PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 394 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
+-++..|..-+. ...|+..+-...|.+..+.-. .-.-...|..+...|-..|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112223332222 235667777777877765421 001235688999999999999999999999
Q ss_pred HHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHHHHHHHHHHHHhcCC
Q 005178 459 MSELGVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV----------KP-------DDRLCGCLLSVVSLCET 518 (710)
Q Consensus 459 m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~p-------~~~~~~~ll~~~~~~g~ 518 (710)
..+...+-- ..+|......-.++.+++.|+++++......- .| +..+|..++..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 988544322 45677777777789999999999988763211 11 23466667777777899
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccC--CCChh-hHHHHHHHHH-hCC--CHHHHHH
Q 005178 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEV--DARRP-FCNCLIDICR-NRN--LNERAHE 591 (710)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~--~~~~~-~~~~l~~~~~-~~g--~~~~A~~ 591 (710)
++....+|+++..+.--.+.++-.++-.+.... ..+++.+.+++ ++. -|... +|++.+--+. +.| ..+.|+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~-yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHK-YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH-HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999998876555555544443322222 55666555544 443 23332 8888765443 333 5899999
Q ss_pred HHHHHHHcCCCCcccccccccchhccccc--ChHHHHHHHHHHHH
Q 005178 592 LLYLGTLYGLYPGLHNKTLDEWSLDVRSL--SVGAAQTALEEWMW 634 (710)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~G~~~~Al~~~~~ 634 (710)
+|+++++ |..|. +++. .+-+ -..+ ..|.+..|+..+.+
T Consensus 572 LFEqaL~-~Cpp~-~aKt--iyLl-YA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 572 LFEQALD-GCPPE-HAKT--IYLL-YAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHh-cCCHH-HHHH--HHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 9999997 55543 3221 1111 1111 23666666666554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-07 Score=96.31 Aligned_cols=207 Identities=15% Similarity=0.094 Sum_probs=145.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 005178 218 IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKP-DPIAFS 296 (710)
Q Consensus 218 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~ 296 (710)
+.-|...|..+.-++..+|+++.+.+.|++....-+. ....|+.+...|.-.|.-..|..+++......-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457788888888889999999999999988765333 67788999999999999999999988776543223 344444
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC-CC
Q 005178 297 VLGKMFG-ESGDYDGIRYVLQEMKSL--GV--QPNLVVYNTLLEAMGKA-----------GKPGLARSLFDEMVESG-LT 359 (710)
Q Consensus 297 ~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~ 359 (710)
..-..|. +.+.+++++.+-.+.... |. ......|..+.-+|... ....++++.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334443 456777777776666651 11 12334455555555432 12356777788877654 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
|+...| +.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+..
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 444333 444567788999999999999988767788899999888999999999999998877653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-10 Score=119.75 Aligned_cols=246 Identities=15% Similarity=0.085 Sum_probs=134.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 212 EMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291 (710)
Q Consensus 212 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 291 (710)
.+...|+.|+.+||..+|.-|+..|+.+.|- +|.-|.-.....+...++.++.+..+.++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444444444444444444444444444444 4444443333334444444444444444443332 244
Q ss_pred HHHHHHHHHHHHhcCCH-----------------------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 292 PIAFSVLGKMFGESGDY-----------------------DGIRYVLQEMKS-LGVQPNLVVYNTLLEAMGKAGKPGLAR 347 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~-----------------------~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (710)
..+|..|..+|...||+ ..-..++..+.- .+.-||..+ .+.-..-.|-++.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHH
Confidence 44444444444444443 333333322211 112233322 333344556667777
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 348 SLFDEMVESGL-TPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 348 ~~~~~m~~~g~-~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
+++..+..... .|..+ ++.-+.... .+++-..+.+...+ .|+..+|.++++.-...|+++.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 76666543211 11111 233333222 23333333333332 47888888888888888888888888888888
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
.|. +.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 233 ~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 885 6666666666654 77788888888888888888888888888777777555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-08 Score=105.82 Aligned_cols=291 Identities=16% Similarity=0.132 Sum_probs=178.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc----
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF-SVLGKMFGES---- 305 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~---- 305 (710)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+...| ..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345566666666666554332 22234445555666666666666666666666653 443333 3333333111
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005178 306 -GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKP-GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALE 383 (710)
Q Consensus 306 -g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 383 (710)
...+....+|+++...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|......+....
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 24555666666665531 3222222221111111122 23444555566666543 45555555554444444444
Q ss_pred HHHHHHhC--------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 384 LWERMREN--------------KWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 384 ~~~~m~~~--------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
++...... .-+|.. .++.-+.+.|-..|++++|.+++++.++.. +..+..|..-...|-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence 44444321 123344 344666778888999999999999998876 455778888899999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCh
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR------LC--GCLLSVVSLCETS 519 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~ll~~~~~~g~~ 519 (710)
++.+|...++.....+.. |...-+..+..+.++|++++|.+++......+..|-.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999887655 77777788888899999999999998887665444221 22 3456688899999
Q ss_pred HHHHHHHHHHHHh
Q 005178 520 EDVGKVITCLQQA 532 (710)
Q Consensus 520 ~~a~~~~~~~~~~ 532 (710)
..|.+.|..+.++
T Consensus 322 ~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 322 GLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.2e-07 Score=87.85 Aligned_cols=301 Identities=13% Similarity=0.040 Sum_probs=211.5
Q ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 005178 290 PDPIAFSVLGKMFG--ESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE-KTL 365 (710)
Q Consensus 290 ~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~ 365 (710)
++.......+.+++ -.++...|...+-.+... -++-|......+...+...|+.++|+..|++.... .|+. ...
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 33333334444443 344444555444444332 24557778888999999999999999999988754 3432 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
....-.+.+.|+.+....+...+.... .-....|..-+.......+++.|+.+-++.++.+ +.+...|..-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHh
Confidence 233334567888888888887776542 1133334444444556788999999999988876 5777888877888899
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH--HhcCChHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL-SVV--SLCETSEDV 522 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~--~~~g~~~~a 522 (710)
.|+.++|.-.|+..+.... -+...|..|+.+|...|++.+|.-.-+..... +.-+..+...+. .+| .-.++ +.|
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r-EKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR-EKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH-HHH
Confidence 9999999999999877422 36889999999999999999998887766542 222444444332 222 23444 889
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 523 GKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.+++++..+++|++..++..++......| ..+.+..++++ +...||....+.|++.+.-.+.+.+|...|..++..
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg-~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEG-PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhC-ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999988888876544434 55666666655 677888888999999999999999999999987744
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-08 Score=92.07 Aligned_cols=406 Identities=12% Similarity=0.083 Sum_probs=245.4
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDE 240 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 240 (710)
.-.++++++|+..+..+.... .++...+-.+.-.+.-.|.+.+|..+-....+ +.-.-..++....+.|+-++
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHH
Confidence 445678888888888876643 45566666666666777888888877654432 33334445556667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHH
Q 005178 241 AIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG-KMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 241 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 319 (710)
-..+...+.. ...---+|.......-.+.+|+++|.+++.. .|+-...|..+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 7766665543 2233344555555556788899999888765 35555555544 35667777787888877776
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCC
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA-----RWAKDALELWERMRENKWP 394 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~ 394 (710)
+. ++-++...|..+....+.=+-..|..-..++.+.+-.. | -.+.-.++. +.-+.|++++--+.+.
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 64 23344455555554444322233333344444332111 1 122333333 2446677776666543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCcC
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG-------NVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~ 467 (710)
=+..--.|+--|.+.+++.+|..+.+++. +.++.-|..-.-.++..| .+.-|.+.|+-.-+.+..-|
T Consensus 284 -IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 -IPEARLNLIIYYLNQNDVQEAISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -ChHhhhhheeeecccccHHHHHHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 12233345556788899999988877764 344444433333333333 34456666655444433322
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CcHHHHHHHHHh
Q 005178 468 -VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQAN-PKLVAFLNLIED 545 (710)
Q Consensus 468 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~L~~ 545 (710)
+..--++..++.-..++|+.+.+++.....=.. |...-..+..++...|++.+|+++|-.+.+.+ .+......+|++
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 223445556666677788888888887665333 43434457888888999999999888776655 344556688888
Q ss_pred hcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 546 NSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
|+...+ ..+-|.+++-++....+.. ........|.+.+.+=-|-+.|+...
T Consensus 437 Cyi~nk-kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNK-KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcC-CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 887665 6677888777765555544 33445577999999887777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-07 Score=95.78 Aligned_cols=410 Identities=11% Similarity=0.035 Sum_probs=269.2
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMP-DEVTYS 261 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 261 (710)
+..|..+|..+.-++..+|+++.+.+.|++....- --....|+.+-.+|...|.-..|+.+++.-......| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 56788999999999999999999999999987642 2356789999999999999999999998766543234 344444
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 005178 262 AILDVYAK-SGKVEEVLSLYERGVAS--G--WKPDPIAFSVLGKMFGES-----------GDYDGIRYVLQEMKSLGVQP 325 (710)
Q Consensus 262 ~li~~~~~-~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p 325 (710)
..-..|.+ .+.+++++.+-.+++.. + -......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 44444443 56778887777776652 1 123345566666565432 2245788888888875422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
|..+...+.--|+..++++.|.+..++..+.+-..+...|..|.-.+.-.+++.+|+.+.+...+.- .-|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333445677789999999999999988657788899988888899999999999998776531 111111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC---------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSD---------------------------YCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~---------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
.-...++.++|......+...- .......++..+....... ...+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccccc-
Confidence 2223445555444433322110 0001112222222111110 000000000
Q ss_pred HHHcCC--CcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 459 MSELGV--AIN------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 459 m~~~~~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
+....+ .|+ ...|......+.+.+..++|.-.+.+..... .-....|......+...|.+++|.+.|..+.
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111111 122 3457777888999999999998888876532 2244567777778889999999999999999
Q ss_pred HhCCcHHHHHHHHHhhcCCcccHHHH-HHHHH-HhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 531 QANPKLVAFLNLIEDNSTGFENIKEE-FRNVI-KDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 531 ~~~p~~~~~~~~L~~~~~~~~~~~~~-a~~~~-~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
.++|++...+..|+.++...|+..-. ...++ +....+|+.. .|-.|+.++.+.|+.++|.+-|..+.+.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999998887766633222 22244 4467788655 9999999999999999999999987644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-07 Score=90.29 Aligned_cols=301 Identities=12% Similarity=0.047 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH
Q 005178 324 QPNLVVYNTLLEAM--GKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF-IL 399 (710)
Q Consensus 324 ~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~ 399 (710)
.|+..+....+.++ +-.++...|...+-.+... -++-|+.....+.+.+...|+.++|+..|++....+ |+. ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence 33333333344444 4455555666555555433 356678888999999999999999999999988652 222 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
.....-.+.+.|+++....+...+.... ..+..-|-.-+.......+++.|+.+-++.++.+.. +...|-.-...+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~ 345 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHH
Confidence 2222334567889999888888887644 345555655566667788999999999999885443 5667766678889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH-hhcCCcccHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE-DNSTGFENIKEEF 557 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~-~~~~~~~~~~~~a 557 (710)
..|+.++|.-.|+..+.. .| +..+|..|+.+|...|.+.||.-.-+...+.-|.....+.++| ..........+.|
T Consensus 346 ~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred hccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH
Confidence 999999999999998763 43 5679999999999999999999999999888899988888887 4444444467889
Q ss_pred HHHHHh-ccCCCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHH
Q 005178 558 RNVIKD-TEVDARR-PFCNCLIDICRNRNLNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 558 ~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~ 634 (710)
+.+.++ +..+|+- +..+.+...|...|++++++.++++.+.. +|+ ......+...+ .+...++|++.|..
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D-----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPD-----VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccc-----cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 998876 6788864 36778889999999999999999987632 222 11111122223 34667778877776
Q ss_pred HHHH
Q 005178 635 TLAK 638 (710)
Q Consensus 635 ~~~~ 638 (710)
.++.
T Consensus 497 ALr~ 500 (564)
T KOG1174|consen 497 ALRQ 500 (564)
T ss_pred HHhc
Confidence 6553
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-09 Score=101.46 Aligned_cols=233 Identities=12% Similarity=0.063 Sum_probs=107.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
+.++|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-++. ++-|+....-+...+...++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444444444444444444444332 233334444444444444444444444444332 11122222233344444445
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005178 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE 457 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 457 (710)
.++|.++|+...+.. +.++.....+...|...++.+.|..+++++.+.| ..+...|+.+.-+|.-.+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555544431 1133333334444444455555555555555554 2444455555555555555555555555
Q ss_pred HHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 458 EMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 458 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+....--.|+ ...|-.+.......|++..|.+.|+-.+..+-. +...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 5444322222 234444444445555555555555555433221 2335555555555556666666666555555554
Q ss_pred HH
Q 005178 536 LV 537 (710)
Q Consensus 536 ~~ 537 (710)
..
T Consensus 462 m~ 463 (478)
T KOG1129|consen 462 MA 463 (478)
T ss_pred cc
Confidence 43
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-09 Score=108.82 Aligned_cols=240 Identities=18% Similarity=0.164 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL-----GV-QPNLV-VYNTLLEAMGKAGKPGLARSLFDEMVES-----GL- 358 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 358 (710)
..+...|..+|...|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344445666666777777776666665542 21 22222 2334666777778888888888777642 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 005178 359 TP-DEKTLTALIKIYGKARWAKDALELWERMREN-----KWP-MDF-ILYNTLLNMCADIGLVEEAERLFEDMKLS---- 426 (710)
Q Consensus 359 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 426 (710)
.| -..+++.|..+|.+.|++++|...+++..+. |.. +.+ ..++.+...|+..+++++|..+++...+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 1346667777788888887777776665431 111 122 24566777788888888888888765442
Q ss_pred -CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 005178 427 -DYCK-PDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL----GV--AI-NVMGCTCLIQCLGKARRIDDLVRVFGVSID- 496 (710)
Q Consensus 427 -~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 496 (710)
+... --..+++.|...|...|++++|.++|++++.. +- .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1101 12467899999999999999999999998752 11 11 245678889999999999999999987653
Q ss_pred ---CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 497 ---RGV-KPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 497 ---~~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
.|. .|+. .+|..|...|...|++++|+++.+.+.+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 2333 3788999999999999999999888753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-06 Score=89.16 Aligned_cols=437 Identities=12% Similarity=0.069 Sum_probs=271.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHH-HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 005178 138 EEAFLRAITEIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN 216 (710)
Q Consensus 138 ~~~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 216 (710)
......+|..+++.|...... ..|+.+++-++|....+...+. -..+.++|.++.-.+....++++|++.|......
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 345566677776666544333 4588999999999998887664 3567899999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 005178 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG-WKPDPIAF 295 (710)
Q Consensus 217 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~ 295 (710)
+ +-|...|.-+--.-.+.|+++...+.-.++.+.... ....|..+..++.-.|+...|..+.+...+.. -.|+...|
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 4 235567776666667788888888877777776322 56778888889999999999999999887764 24666665
Q ss_pred HHHHH------HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 296 SVLGK------MFGESGDYDGIRYVLQEMKSLGVQPNLVV-YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 296 ~~li~------~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
.-... ...+.|.+++|.+.+..-... ..|-.. -.+-...+.+.+++++|..+|..++.. .||..-|...
T Consensus 183 e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~ 258 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEG 258 (700)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHH
Confidence 53332 346678888888887765542 123333 345567788999999999999999987 5776666554
Q ss_pred HH-HHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 369 IK-IYGKARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 369 i~-~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
+. ++.+--+.-++. .+|....+. ++-....-..=+.......-.+..-+++..+.+.|+ ++ ++..+...|-.-
T Consensus 259 l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~-p~---vf~dl~SLyk~p 333 (700)
T KOG1156|consen 259 LEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV-PS---VFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC-Cc---hhhhhHHHHhch
Confidence 44 443343444444 666666543 111111111001111111223334455556666663 22 333444444332
Q ss_pred CCHHHHHHHHHHHHH----cC----------CCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 005178 447 GNVDNAIELFEEMSE----LG----------VAINVMGC--TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCL 509 (710)
Q Consensus 447 g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 509 (710)
...+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|..+.+..++. .|+.+ .|..-
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~K 411 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVK 411 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHH
Confidence 222211111111111 10 14555444 44567788889999999999887763 55544 45555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhccCCCCh-h--------hHHH-
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDTEVDARR-P--------FCNC- 575 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~-~--------~~~~- 575 (710)
...+.+.|+.++|..+++++.+++-.+..+. ..+.+ .+..++|.+.......+... . .|--
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr-----An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR-----ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH-----ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhH
Confidence 6788889999999999999888764443222 22222 23566677666554332211 0 2322
Q ss_pred -HHHHHHhCCCHHHHHHHHH
Q 005178 576 -LIDICRNRNLNERAHELLY 594 (710)
Q Consensus 576 -l~~~~~~~g~~~~A~~~~~ 594 (710)
-+.+|.+.|++.+|.+=|.
T Consensus 487 E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 2457888888888864443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-08 Score=105.44 Aligned_cols=252 Identities=14% Similarity=0.074 Sum_probs=172.7
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005178 175 NWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLM 254 (710)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 254 (710)
-.++.. ++.|+.++|..+|.-|+..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+. .
T Consensus 14 a~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 14 ALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334433 48899999999999999999999998 9988887777778889999999999988887776 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH----hCCCCCCH--------------HHHHHHHHHHHhcCCHHHHHH
Q 005178 255 PDEVTYSAILDVYAKSGKVEE---VLSLYERGV----ASGWKPDP--------------IAFSVLGKMFGESGDYDGIRY 313 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~g~~~~~--------------~~~~~li~~~~~~g~~~~A~~ 313 (710)
|-..+|..|..+|...|++.. +.+.+..+. ..|+.-.. ..-..++....-.|-++.+++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999998654 333222222 11211100 011123334444556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
++..+...... ..... .+.-+... ..-..++........-.|+..+|.++++.-.-+|+.+.|..++.+|.+.|+
T Consensus 161 ll~~~Pvsa~~-~p~~v--fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 161 LLAKVPVSAWN-APFQV--FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHhhCCccccc-chHHH--HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 66554322100 01111 12222221 222333333322211158899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
+.+..-|-.|+-+ .++...++.++.-|.+.|+ .|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchh
Confidence 9888776666655 7888889999999999997 8999999888887777655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-08 Score=104.06 Aligned_cols=237 Identities=18% Similarity=0.209 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVAS-----GW-KPDPI-AFSVLGKMFGESGDYDGIRYVLQEMKSL-----GV-QP 325 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p 325 (710)
+...+...|...|++++|+.++++.++. |. .|... ..+.+...|...+++++|..+|+++... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555666666666666666555432 10 12222 2223455566666666666666666441 21 11
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 005178 326 N-LVVYNTLLEAMGKAGKPGLARSLFDEMVES-----GLT-PDE-KTLTALIKIYGKARWAKDALELWERMREN---KWP 394 (710)
Q Consensus 326 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 394 (710)
. ..+++.|...|.+.|++++|...++...+- |.. |.+ ..++.+...|+..+++++|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 224556666666666666666665554321 111 111 23455556666677777777666654431 111
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---
Q 005178 395 M----DFILYNTLLNMCADIGLVEEAERLFEDMKLSD----Y--CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE--- 461 (710)
Q Consensus 395 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 461 (710)
+ -..+++.|...|...|++++|+++|+++.... . ..-....++.|...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 13466777777777777777777777664421 1 011234566677777777777777777766432
Q ss_pred -cCCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 462 -LGVA-IN-VMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 462 -~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
.|.. |+ ..+|..|...|...|++++|+++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2322 22 4567777778888888888877777665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=81.79 Aligned_cols=47 Identities=43% Similarity=0.569 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIY 372 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 372 (710)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=81.52 Aligned_cols=49 Identities=29% Similarity=0.536 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-07 Score=98.40 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
.-+...|...|++++|++++++.++.... .+..|..-...|-..|++.+|.+.++.....+ .-|...-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHH
Confidence 33444455556666666666655554211 24445555555555666666666666555554 3455555555555556
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCH--H----H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINV--M----G--CTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~--~----~--~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+|++++|.+++......+..|-. . . ......+|.+.|++..|++.|....
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666655555444322211 1 1 1334556666777766666655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-06 Score=86.65 Aligned_cols=454 Identities=14% Similarity=0.066 Sum_probs=286.7
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
.+++...+.+.+.+... ++....+.....-.+...|+-++|........+..+. +.+.|+.+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34566777777777664 3444455555555667889999999998888776443 67888888888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005178 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG- 322 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 322 (710)
.|......+.. |...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..++.-.|++..|..++++..+..
T Consensus 97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999887643 78888877777778888888887777777652 3346678888889999999999999999998753
Q ss_pred CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 323 VQPNLVVYNTLL------EAMGKAGKPGLARSLFDEMVESGLTPDEK-TLTALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 323 ~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
-.|+...|.... ....+.|..++|.+.+..-... ..|.. .-..-...+.+.+++++|..+|..++.. .|
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 246665554332 3445678888888777665432 12222 2234556778899999999999999987 45
Q ss_pred CHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 396 DFILYNTLLN-MCADIGLVEEAE-RLFEDMKLSDYCKPDNYSYTAMLNIYGS-GGNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 396 ~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
|..-|.-.+. ++.+.-+.-++. .+|....+.- |....-..+--.... ..-.+..-.++..+.+.|+++-. .
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~ 324 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---K 324 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---h
Confidence 6555555444 443344444444 6666655432 211111111111111 22233444566667777776433 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSI----DRG----------VKPDDRLCG--CLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+...|-.-.+.+-..++.-.+. ..| -.|....|. .+...+-..|+++.|..+++.+.+..|..
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 33333332222221111111111 111 145555444 67778889999999999999999999998
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHhcc-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCccccccccc
Q 005178 537 VAFLNLIEDNSTGFENIKEEFRNVIKDTE-V-DARRPFCNCLIDICRNRNLNERAHELLYLGTLYGL--YPGLHNKTLDE 612 (710)
Q Consensus 537 ~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 612 (710)
...+-+=++.+...| ..++|..++.... . .+|..+=.--+.-..+.++.++|.++.-.-...|. ..++. .-+..
T Consensus 405 iEly~~KaRI~kH~G-~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~-~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAG-LLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLA-EMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHH-HhhhH
Confidence 877755555544446 6677777776542 2 34443333455666788999999998887765553 22222 14567
Q ss_pred chhc--cccc-ChHHHHHHHHHHHH
Q 005178 613 WSLD--VRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 613 w~~~--~~~~-~~G~~~~Al~~~~~ 634 (710)
|-.. ...+ ++|..-+|+.-|-+
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 7643 2223 45666677765544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.4e-08 Score=96.61 Aligned_cols=195 Identities=13% Similarity=-0.008 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.|..+...|...|+.++|...|++..+.. +.+...|+.+...|...|++++|...|++.++.... +..+|..+..++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34445555555566666666666555544 345555666666666666666666666665553221 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA-NPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
...|++++|++.|++..+. .|+..........+...++.++|...|++.... +|+.. .+. +...+.......+..
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~-~~~-~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQW-GWN-IVEFYLGKISEETLM 218 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc-HHH-HHHHHccCCCHHHHH
Confidence 5666666666666665543 232221111112223345556666655443322 22221 111 111111000011111
Q ss_pred HHHHHhccC----CC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 558 RNVIKDTEV----DA-RRPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 558 ~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
..+.+.... .| ....|..|+.++.+.|++++|+..|+++++.+
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111111111 11 12378899999999999999999999988554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-07 Score=84.68 Aligned_cols=206 Identities=14% Similarity=-0.029 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
+..-|.-+|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++....... +..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456677888888888888888888764 344667788888888888888888888888776444 5667777777788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|...|++........--..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 888888888888888775443334567888888888888888888888888875433 4556677777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+++.....+. ++.......+..-...|+.+.+-++=..+.+..|....
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888776554 77777777777777788877777776667777776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=94.40 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005178 236 NLFDEAIEWFERMYKTG-LMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIR 312 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 312 (710)
+..+.++.-+.+++... ..| ....|..+...|.+.|+.++|...|++.++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555431 111 13445566666666677777777666666643 334566666666667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (710)
..|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 7776666542 1134456666666666677777777776666542 322111111222334456666666665544321
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY-----CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.++...+ .+ .....|+...+ +.+..+.+... .+....+|..+...|.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2221111 11 22233444333 23333332110 01123456666666666666666666666666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-05 Score=82.71 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFE--------EMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
...+|.+++....+... ......--.++......|+++.|.+++. .+.+.+..| .+...++..|.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~p-~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHP-EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccC
Confidence 46677777777765542 2224566677778888999999999998 555544444 444556666778888
Q ss_pred HHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 484 IDDLVRVFGVSIDR--GVKPDDR----LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 484 ~~~A~~~~~~m~~~--~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
.+.|..++.+.+.. .-.+... ++.-+...-.+.|+.++|..+++++.+.+|++..++.-+..++... ..+.|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~--d~eka 510 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL--DPEKA 510 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc--CHHHH
Confidence 77777777776531 1111222 3333334444679999999999999999998887665554444422 45667
Q ss_pred HHHHHhccCC
Q 005178 558 RNVIKDTEVD 567 (710)
Q Consensus 558 ~~~~~~~~~~ 567 (710)
..+-+.++..
T Consensus 511 ~~l~k~L~p~ 520 (652)
T KOG2376|consen 511 ESLSKKLPPL 520 (652)
T ss_pred HHHhhcCCCc
Confidence 7777766443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-06 Score=86.48 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI-ELDNITY-STIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
...|..+...+...|+.+.+.+.+....+... .++.... ......+...|++++|.+++++..+.... +...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 44555666666666777776666665544321 1222211 12222556678888888888877765322 3333332 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 265 DVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 265 ~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
..+.. .+....+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222 334444444444311 1112223344455567777788888888888777753 23455667777777777
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 341 GKPGLARSLFDEMVESGL-TPDE--KTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
|++++|...+++...... .++. ..|..+...+...|++++|..+|++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888877777665421 1222 2344566677777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-06 Score=84.83 Aligned_cols=385 Identities=13% Similarity=0.053 Sum_probs=209.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 005178 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNLFDEA 241 (710)
Q Consensus 163 ~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A 241 (710)
+-++++.|+..|-..+... ++|.+.|..-..+|.+.|++++|.+=-.+-.+. .|+ ...|+-...++.-.|++++|
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 3457889999998887764 568888999999999999999888766666554 455 46788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHh--------
Q 005178 242 IEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYE------RGVAS---GWKPDPIAFSVLGKMFGE-------- 304 (710)
Q Consensus 242 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~~~~~---g~~~~~~~~~~li~~~~~-------- 304 (710)
+.-|.+-++.... +...++.+..++.... . +.+.|. .+... ........|..++..+-+
T Consensus 90 ~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKDPS-NKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcCCc-hHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 9999887776422 5667777777772111 0 111111 11000 000011122222222211
Q ss_pred --cCCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHH
Q 005178 305 --SGDYDGIRYVLQEM-----KSLG-------VQP------------N----------LVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 305 --~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~ 348 (710)
-.++..+.-++... ...| ..| | ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111121111110 0000 011 0 1123446666667777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHH
Q 005178 349 LFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT-------LLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~ 421 (710)
-+....+.. .+..-++....+|...|.+......-....+.|.. ...-|+. +..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777653 34445566666777777777776666666555433 2222222 2235555667777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+...... .|+. ..+....+++....+.....+... ..-...-...+.+.|++..|++.|.+++.....
T Consensus 323 kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~- 390 (539)
T KOG0548|consen 323 KALTEHR-TPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE- 390 (539)
T ss_pred HHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-
Confidence 7655432 2221 223333444444444433322111 111122245566677777777777777665422
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCCh
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARR 570 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (710)
|...|.....+|.+.|.+..|.+--+...+++|+....+.-=|.++....++.+....+.+....+|+.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 455666666677777777777776666666777665544333333322232333333344444445543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-06 Score=82.32 Aligned_cols=187 Identities=12% Similarity=0.043 Sum_probs=96.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
..+.+.|+++.|.+-+..|.-......|++|...+.-.=. .+++.+..+-+.-+.+.+. -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3456778888888888888655444567777766543322 2334444444444444433 3467888888888888888
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhCCcH--HHHHHHHHhhcCCcccHHHHHHHH
Q 005178 485 DDLVRVFGVSIDRGVK-PDDRLCGCLLSVVS-LCETSEDVGKVITCLQQANPKL--VAFLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~--~~~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
+-|..++-+-.....+ .+...|+ |+.++. -.-..++|.+-++.+.+.-.+- ..++..-.. .. .+..++.+..
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~-r~--~~dd~a~R~a 402 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA-RH--NRDDEAIRKA 402 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cccHHHHHHH
Confidence 8888887542211111 1122232 333333 2344566666554432210000 000000000 00 0011223333
Q ss_pred HHhccC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 561 IKDTEV--DARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 561 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++.... +.-.++..+-.+.|++..++..+.++|..-.
T Consensus 403 i~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 403 VNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 332211 1123355667788999999999999998754
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-06 Score=78.89 Aligned_cols=402 Identities=9% Similarity=0.012 Sum_probs=238.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
-.++..|+.+++.-..... +....+---+..++...|++++|...+.-+... -.++...+-.+..++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 3468888888887653321 111122233556677889999999998887764 34566777777777777888888887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+-.+..+ +...-..|+..-.+.|+-++-..+.+.+.+. ..---+|.......-.+++|++++..+...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 7655432 3344445556666778877777776666542 233344555555566788999999988875
Q ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 324 QPNLVVYNT-LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNT 402 (710)
Q Consensus 324 ~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (710)
.|+....|. +.-+|.+..-++-+.+++.--.++ ++.+....|....-..+.=.-..|.+-...+.+.+-. . | -
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~ 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-P 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-h
Confidence 345555553 344566777777787877776655 2233344443333333322223333334444433211 1 1 1
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 403 LLNMCADI-----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 403 li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+.-+++. .+-+.|++++--+.+. -| ..-..|+--|.+.+++.+|..+.+++.- .+..-|-.-...
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~---IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH---IP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh---Ch--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 22223332 2346677766655532 12 3345567778999999999998876542 122223222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 478 LGKAR-------RIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 478 ~~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
++..| ...-|.+.|+-.-+.+..-|.+ --.++.+++.-..++++.+-++..+....-++..|.-.++.+...
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence 33333 3455666665544444443333 223566677777889999999999988777777777667665555
Q ss_pred cccHHHHHHHHHHhc-cCC-CChhhHHH-HHHHHHhCCCHHHHHHHHHH
Q 005178 550 FENIKEEFRNVIKDT-EVD-ARRPFCNC-LIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~-~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~ 595 (710)
.| ...+|++++-.+ +.+ .+..+|-+ |...|.+.|..+.|..++-+
T Consensus 406 tg-ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 406 TG-NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hc-ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 56 556677766544 222 23445654 55667788889999877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-05 Score=77.14 Aligned_cols=319 Identities=12% Similarity=0.029 Sum_probs=195.8
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHcCCCCCHHH-H
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---CAKRCNLFDEAIEWFERMYKTGLMPDEVT-Y 260 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~ 260 (710)
.++.-.--+...+...|++.+|+.-|...++. |...|.++.+ .|...|+-..|+.=|.+.++. +||-.. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 34444455667777788888888888877764 5555555544 677778888888777777765 555332 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA----------------FSVLGKMFGESGDYDGIRYVLQEMKSLGVQ 324 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (710)
..-...+.+.|.++.|..=|+.++... |+..+ ....+..+.-.|+...|+.....+++.. +
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 223345678888888888888887653 32111 1122333445566666666666666532 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 404 (710)
-|...|..-..+|...|++..|+.-++..-+.. ..+..++--+-..+...|+.+.++...++.++. .||.-..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C---- 259 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC---- 259 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH----
Confidence 355555556666666666666665555554433 223333334445555666666666666666543 2332211
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhc
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKA 481 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 481 (710)
|..-..+.+..+.++.|.+ ....++|.+++.-.+...+...... ...+..+-.+|...
T Consensus 260 --f~~YKklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 260 --FPFYKKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred --HHHHHHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 1111122222223333322 2345667777777777776543322 23445566778889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 482 RRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
|++.+|++...+.++ +.|| ..++.--..+|.-..++++|+.-|+.+.+.++++..+-
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 999999999999887 5565 66888888899999999999999999999999887653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-06 Score=79.32 Aligned_cols=196 Identities=12% Similarity=0.020 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG 306 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 306 (710)
.|.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|++.+... +-+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3444667777777777777777766432 45666777777777777777777777776653 344566677777777777
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 307 DYDGIRYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELW 385 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 385 (710)
++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7777777777776532111 23466666666667777777777777766653 222344555666666677777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 386 ERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 386 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
+.....+. ++..+.-..|..--..|+.+.+-+.=.++.+.
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77666554 56666666666666667766666665555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-06 Score=83.96 Aligned_cols=363 Identities=13% Similarity=0.064 Sum_probs=231.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCc-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPME-TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD-NITYSTIITCAKRCNL 237 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 237 (710)
.+-.++++++|++=-...++. .|+ ...|.....++.-.|++++|+.-|.+-++. .|+ ...++-+..++....
T Consensus 45 a~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~- 118 (539)
T KOG0548|consen 45 AYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDY- 118 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHH-
Confidence 345566788887766666554 344 467999999999999999999999999886 344 466677776662110
Q ss_pred HHHHHHHH------HHHHHcC---CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHH-----HhCC------
Q 005178 238 FDEAIEWF------ERMYKTG---LMPDEVTYSAILDVYAKS----------GKVEEVLSLYERG-----VASG------ 287 (710)
Q Consensus 238 ~~~A~~~~------~~m~~~g---~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-----~~~g------ 287 (710)
.+.+.| ..+.... .......|..++..+-+. .++..+.-.+... ...|
T Consensus 119 --~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~ 196 (539)
T KOG0548|consen 119 --AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILAS 196 (539)
T ss_pred --HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCC
Confidence 111111 1111100 000112233333332211 0111111111100 0001
Q ss_pred -CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 288 -WKP------------D----------PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 288 -~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
..| | ..-...+.++..+..+++.|++-+....... -+..-++....+|...|.+.
T Consensus 197 ~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~ 274 (539)
T KOG0548|consen 197 MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYA 274 (539)
T ss_pred CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHH
Confidence 111 0 1224467777788889999999999888753 35555677788899999888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 345 LARSLFDEMVESGLTPDEKTLT-------ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
++...-....+.|.. ...-|+ .+..+|.+.++++.|+..|.+.......||.. .+....+++.
T Consensus 275 ~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~ 344 (539)
T KOG0548|consen 275 ECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKAL 344 (539)
T ss_pred HhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHH
Confidence 888777777666522 222222 34446777889999999999977654444322 2333445555
Q ss_pred HHHHHHHhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 418 RLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.......-.+ |.. .-...-.+.+.+.|++..|+..|.++++... -|...|....-+|.+.|.+..|+.-.+..++
T Consensus 345 k~~e~~a~~~---pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 345 KEAERKAYIN---PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHhhC---hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5554444332 332 2223337778899999999999999999773 3788999999999999999999999888877
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 497 RGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 497 ~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
. .|+.. .|.-=..++....+++.|.+.|.+..+.+|+...+.+.+.+|..
T Consensus 421 L--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 421 L--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred c--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 5 44433 44444556666778899999999999999999999988887754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-08 Score=98.02 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=152.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (710)
-.|++..++.-.+ .....-..+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 4566666665554 222111112334445666777777766433 3333322 4555555544444433344444544
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 349 LFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 349 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443332222 2233333334556678888888877643 256666777888888899999999988888643
Q ss_pred CCCCCHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005178 428 YCKPDNYSYTAM----LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD 503 (710)
Q Consensus 428 ~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 503 (710)
.|. +...+ +..+...+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +.
T Consensus 162 ---eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~ 235 (290)
T PF04733_consen 162 ---EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DP 235 (290)
T ss_dssp ---CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HH
T ss_pred ---CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CH
Confidence 332 22233 33333345688999999997664 4568888888888899999999999998887754433 45
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCcHHHHHH
Q 005178 504 RLCGCLLSVVSLCETS-EDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.+...++.+....|+. +.+.+++.++....|++..+.+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 5666777777788876 6677888888888888765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-06 Score=85.41 Aligned_cols=304 Identities=13% Similarity=-0.007 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGL-MPDE-VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
..|..+...+...|+.+.+...+.+..+... ..+. .........+...|++++|..++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4455556677777888887777776655422 2232 222333445677899999999999988763 444445543 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 301 MFGE----SGDYDGIRYVLQEMKSLGVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 301 ~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
.+.. .+..+.+.+.++.. .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 3333 45555555555541 122333 3455567778899999999999999999874 44566788889999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHH-H--HHHHHHHhCCCH
Q 005178 376 RWAKDALELWERMRENKW-PMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY-T--AMLNIYGSGGNV 449 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~ 449 (710)
|++++|...+++..+... .++. ..|..+...+...|++++|..++++........+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999887532 2232 345578888999999999999999986443101222211 1 333344445544
Q ss_pred HHHHHH--HHHH-HHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------C-CHHHHHHHHHHHHhcC
Q 005178 450 DNAIEL--FEEM-SELGV-AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-------P-DDRLCGCLLSVVSLCE 517 (710)
Q Consensus 450 ~~A~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~~ll~~~~~~g 517 (710)
+.+.++ +... ..... ............++...|+.++|..+++.+...... . .........-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 433333 2111 11100 111122235667788899999999999988743211 0 1112222333456789
Q ss_pred ChHHHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQ 531 (710)
Q Consensus 518 ~~~~a~~~~~~~~~ 531 (710)
+.++|.+.+..+..
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-07 Score=95.84 Aligned_cols=250 Identities=16% Similarity=0.109 Sum_probs=154.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++..+.... |......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445666666666666666553 334556666666666666666666666666665333 555666666666666766677
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHH-------HHHHhCCCHHHHHHHHHHH-HHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAML-------NIYGSGGNVDNAIELFEEM-SELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
.+.++...... ++-...-..-. ..+.....+....++|-++ .+.+..+|......|.-.|--.|.+++|+
T Consensus 373 l~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77766665432 11100000000 0111111222333444444 34454567777777777788888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCC
Q 005178 489 RVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVD 567 (710)
Q Consensus 489 ~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~ 567 (710)
+.|+.++. ++| |..+||-|...++...+.++|+..|.++.++.|.+..+...||.++...|.+.+++..|+..+...
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 88888876 444 455888888888888888888888888888888888877777777777775555555566554322
Q ss_pred C-----------ChhhHHHHHHHHHhCCCHHHHHHH
Q 005178 568 A-----------RRPFCNCLIDICRNRNLNERAHEL 592 (710)
Q Consensus 568 ~-----------~~~~~~~l~~~~~~~g~~~~A~~~ 592 (710)
+ +..+|.+|=.++.-.++.|.+.++
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 123787777777777777755433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-06 Score=89.59 Aligned_cols=240 Identities=13% Similarity=0.156 Sum_probs=131.5
Q ss_pred cHHHHHHHHH--HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-------C-C
Q 005178 186 ETIFYNVTMK--SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-G-------L-M 254 (710)
Q Consensus 186 ~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-------~-~ 254 (710)
|..+-.++++ .|...|+.+.|.+-.+-+. +...|..|.+.|.+.++++-|.-.+-.|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444543 2455566666655554443 2345666666666666555555444444321 1 0 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
++ .+-..+.......|.+++|+.+|.+... |..|=+.|-..|++++|.++-+.-.... =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 11 2222222233456677777777766654 3344455666677777776654432211 112444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----------CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005178 335 EAMGKAGKPGLARSLFDEMVE----------SG---------LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM 395 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~----------~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 395 (710)
.-+-..++.+.|++.|++.-. .. -..|...|.-....+-..|+.+.|+.+|...++
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 445555666666666653311 00 012333444444555566777777777776653
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|.+++...|-.|+.++|-++-++- -|......|...|-..|++.+|..+|-++.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556667777778888777765542 355566677788888888888888877664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-05 Score=78.29 Aligned_cols=213 Identities=16% Similarity=0.089 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245 (710)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 245 (710)
.+++|.+..+++.... +.|...+..-+-++.+.+.|++|+.+.+.-... ..+.+-+-.=..+.-+.+..++|+..+
T Consensus 27 e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred HHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 3899999999988763 666777888888889999999998665443221 111111111223555788999999888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 246 ERMYKTGLMP-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 246 ~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+ |+.+ +..+...-...+.+.|++++|+.+|+.+.+.+.+-- ...-..++..-. +..+ +.+.....
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPE 169 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccC
Confidence 7 3333 344666667778899999999999999987652211 111111221111 1111 11222222
Q ss_pred CCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCC------CCC-HH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 005178 324 QPNLVVYNT---LLEAMGKAGKPGLARSLFDEMVESGL------TPD-EK-------TLTALIKIYGKARWAKDALELWE 386 (710)
Q Consensus 324 ~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~------~p~-~~-------~~~~li~~~~~~g~~~~A~~~~~ 386 (710)
.| ..+|.. ..-.+...|++.+|+++++...+.+. ..+ .. .-..|..++...|+-++|..+|.
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 23 223332 34456778999999999998843211 111 11 11234556778999999999999
Q ss_pred HHHhCCCCCCH
Q 005178 387 RMRENKWPMDF 397 (710)
Q Consensus 387 ~m~~~~~~~~~ 397 (710)
.++..+.. |.
T Consensus 249 ~~i~~~~~-D~ 258 (652)
T KOG2376|consen 249 DIIKRNPA-DE 258 (652)
T ss_pred HHHHhcCC-Cc
Confidence 99988655 43
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-05 Score=91.73 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
+...+..++.+.|+.++|.+.+.++++..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45567778999999999999999887554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-06 Score=89.65 Aligned_cols=343 Identities=17% Similarity=0.156 Sum_probs=193.7
Q ss_pred CCCCHHHHHHHHHhccCHHHHHHHHHHHHhC--------CCCCCcHHHH-HHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 005178 150 HQPTRENALLILNSLKFWQKSYFFFNWIKSQ--------NLFPMETIFY-NVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 150 ~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~--------~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 220 (710)
.....+.+-.++..+++++.|++.|++-..- ..+|..++.. ..-...+...|+++.|..-|-+..
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------ 733 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------ 733 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence 3334445555666666777777666531110 0022222111 112223344455555544443221
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
...-.|.+......|.+|+.+++.+.... .-..-|..+.+-|...|+++-|.++|-+.- .++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 11223345566778888888888777652 234457777888888999999988886542 3566788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 380 (710)
+|.+.|+|++|.++-++.. |.+.....|.+-..-+-+.|++.+|.++|-.+. .|+. .|.+|-+.|..++
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchH
Confidence 8999999999988877664 334455567666777778888888888775443 3443 4667778888887
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
.+++..+-... .-..|...+..-|-..|++..|+.-|-+..+ |.+-+++|-..+.+++|.++-+.--
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc
Confidence 77776654321 1123455566677778888888777655432 4556677777777777766643210
Q ss_pred HcCCC-cCHHHHH------HHHHHHHhcC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005178 461 ELGVA-INVMGCT------CLIQCLGKAR-------------RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 461 ~~~~~-p~~~~~~------~li~~~~~~g-------------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 520 (710)
..+.. .-...|. +.+..+-++| .++-|.++-+-..+. -.|.. ...+...+...|+++
T Consensus 936 g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 936 GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFE 1012 (1636)
T ss_pred cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchh
Confidence 00000 0001111 1122223333 344444443333222 12222 223344456788888
Q ss_pred HHHHHHHHHHHhCCcHHHH
Q 005178 521 DVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~ 539 (710)
+|-+-|-++.+++.-+.++
T Consensus 1013 daskhyveaiklntynitw 1031 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLNTYNITW 1031 (1636)
T ss_pred hhhHhhHHHhhcccccchh
Confidence 8888887777766554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-06 Score=85.05 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=112.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH--H
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV--D 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~ 450 (710)
..+..++|+.+..++++.+.. +..+|+.--.++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhH
Confidence 345556666666666654322 3334444444444555 4566677766666655 45555666555555555542 5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----hHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC---ET----SEDVG 523 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~a~ 523 (710)
++..+++++++.+.+ |..+|+....++.+.|+++++++.++++++.+.. |...|+....++.+. |. .+++.
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 566666666665443 6666766666666777777777777777765544 444555554444433 21 23556
Q ss_pred HHHHHHHHhCCcHHHHHHHHHhhcCCccc---HHHHHHHHHHh-ccCCCCh-hhHHHHHHHHHh
Q 005178 524 KVITCLQQANPKLVAFLNLIEDNSTGFEN---IKEEFRNVIKD-TEVDARR-PFCNCLIDICRN 582 (710)
Q Consensus 524 ~~~~~~~~~~p~~~~~~~~L~~~~~~~~~---~~~~a~~~~~~-~~~~~~~-~~~~~l~~~~~~ 582 (710)
.+..++...+|++..++..++..+...+. ...++.++... ...+|.. .....|++.|+.
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 66667777777777766666554433111 11234444333 2334432 255667777664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.4e-05 Score=83.24 Aligned_cols=381 Identities=13% Similarity=0.115 Sum_probs=232.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-E--------IELDNITYSTIITCAKR 234 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~~p~~~~~~~li~~~~~ 234 (710)
.++.+.|......+. +-.+|..|.+++.+..+++-|.-.+-.|... | -.++ .+=.-+......
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 456777766665543 4468999999999999999888777766432 1 1122 222222233456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 235 CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYV 314 (710)
Q Consensus 235 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 314 (710)
.|.+++|+.+|.+-++. ..|-..|...|.+++|.++-+.--.-. =..||.....-+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence 79999999999888763 445567788999999998876533221 124555566666677888888887
Q ss_pred HHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 315 LQEM----------KSLG---------VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 315 ~~~m----------~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
|++. +... -..|...|.-....+-..|+.+.|+.+|....+ |-+++...|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 7652 2111 112444455555555667899999999887763 56788888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CC-CCHHHHHHHHHHHHh--CCC
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY----CK-PDNYSYTAMLNIYGS--GGN 448 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~~li~~~~~--~g~ 448 (710)
|+.++|-++-++-. |......|...|-+.|++.+|..+|.+...-.. |+ .|. -..|.+.+.. ..+
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSD 1023 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchh
Confidence 99999998877643 667788899999999999999999987653110 00 000 0122222222 223
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFG--------VSIDR--GVKPDDRLCGCLLSVVSLCET 518 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--~~~p~~~~~~~ll~~~~~~g~ 518 (710)
.-.|-++|++.- .. +..-+..|-++|.+.+|+++-= +++.. ...-|+...+.-...+....+
T Consensus 1024 ~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q 1095 (1416)
T KOG3617|consen 1024 LVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ 1095 (1416)
T ss_pred HHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH
Confidence 344555555432 11 1223345778888888776521 12222 233356666666777777888
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhcc-CCCC----hhhHHHHHHHHHhCCCHHHHHHHH
Q 005178 519 SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE-VDAR----RPFCNCLIDICRNRNLNERAHELL 593 (710)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 593 (710)
++.|..++-...+. -..|+-|..+.-...++..+++.--. ..|+ ..+...+.+.|.++|.+..|-+=|
T Consensus 1096 yekAV~lL~~ar~~-------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREF-------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 88888877665432 22333332222223334333332111 1222 226677888899999888775544
Q ss_pred HHH
Q 005178 594 YLG 596 (710)
Q Consensus 594 ~~~ 596 (710)
-++
T Consensus 1169 TQA 1171 (1416)
T KOG3617|consen 1169 TQA 1171 (1416)
T ss_pred hhh
Confidence 443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-05 Score=90.75 Aligned_cols=337 Identities=14% Similarity=0.019 Sum_probs=188.4
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGL------MPD--EVTYSAILDVYA 268 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 268 (710)
+...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666555542110111122222233345567888888888877654310 011 112222334456
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPD----PIAFSVLGKMFGESGDYDGIRYVLQEMKSL----GV-QPNLVVYNTLLEAMGK 339 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 339 (710)
..|++++|...+++....--..+ ....+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 77888888888887765311111 123455666677788888888888777642 11 0112344556667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 005178 340 AGKPGLARSLFDEMVES----GLT--P-DEKTLTALIKIYGKARWAKDALELWERMRENK--WPM--DFILYNTLLNMCA 408 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~ 408 (710)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 88888888887776542 211 1 12234445556667788888888877765421 111 1233444556677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHh
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSY-----TAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGK 480 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~ 480 (710)
..|+.++|.+.+.+.............+ ...+..+...|+.+.|..++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 7888888888877765421100111111 1122344557888888888766544211111 1113456667778
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 481 ARRIDDLVRVFGVSIDR----GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
.|++++|...+++.... |...+. .+...+..++...|+.++|...+.++.+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888877642 322222 245566667778888888888888877654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-05 Score=84.42 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHHHHhcc-CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHH
Q 005178 156 NALLILNSLK-FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLAN 211 (710)
Q Consensus 156 ~~~~~l~~l~-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 211 (710)
.+...+.-+. ++.+|..+|-. ++ + -...|.+|....+|++|+.+-+
T Consensus 535 kvra~lail~kkfk~ae~ifle---qn----~---te~aigmy~~lhkwde~i~lae 581 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIFLE---QN----A---TEEAIGMYQELHKWDEAIALAE 581 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHHHh---cc----c---HHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444 36777666532 11 1 2345677777788888877653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-05 Score=85.96 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=116.9
Q ss_pred HHHHHHHhhCCCCCCHHHHHH----HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 005178 139 EAFLRAITEIPHQPTRENALL----ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 139 ~~~~~~l~~~~~~~~~~~~~~----~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
.++..+++++...+...-+.. ++....+...|.+.|+.+.+.. ..|...+....+.|++..+++.|..+.-..-
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 344455555544443332222 2333334677888888887653 4577888889999999999999988843332
Q ss_pred HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-
Q 005178 215 SNEI-ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP- 292 (710)
Q Consensus 215 ~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~- 292 (710)
+... ..-..-|...--.|...++...|+..|+...+..+. |...|..++.+|.+.|++..|+++|.+.... .|+.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH
Confidence 2210 001122333333677788899999999988887654 7889999999999999999999999888764 3432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
..---...+.+..|.+.+|...+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2222233345677888888888877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-06 Score=93.47 Aligned_cols=225 Identities=13% Similarity=0.058 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP-----NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK 363 (710)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 363 (710)
+-+...|-..|......++.++|++++++.+.. +.+ -.-.|.++++.-..-|.-+...++|+++.+. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 334667888888888899999999999888753 111 1235777777777777788888889888875 22355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.|..|...|.+.+.+++|.++|+.|.++ +......|...++.+.+..+-+.|..++.+..+.-.-.-......-.++.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7888889999999999999999999876 334677888888888888888899999988877531112455566677777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCET 518 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~ 518 (710)
.+.|+.+.+..+|+.......+ -...|+.+|+.-.++|+.+.+..+|++.+..++.|... .|.-.+..-.+.|+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 8899999999999988875433 56789999999999999999999999999888876543 55566665555666
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-07 Score=88.89 Aligned_cols=248 Identities=17% Similarity=0.169 Sum_probs=116.1
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEV 276 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 276 (710)
+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344566666654443 111111112233334445666666655433 2222221 44444444443333322344444
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 277 LSLYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 277 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (710)
+.-+++........ +.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444433322221 2222222333455566666666666542 2445555566666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 356 SGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP 431 (710)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 431 (710)
.+ .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+.-++...|++++|++++.+....+ +.
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~ 233 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PN 233 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cC
Confidence 42 232 22233333322 22466666666665543 44456666666666666666666666666655444 34
Q ss_pred CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNV-DNAIELFEEMSE 461 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 461 (710)
+..+...++.+....|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555555566655555555 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.7e-06 Score=88.86 Aligned_cols=384 Identities=11% Similarity=-0.038 Sum_probs=236.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
+...|...|-+..+..+. =...|..|...|+..-+...|.+.|+...+.+ .-+...+....+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356666666665554221 25678889999988888999999999998764 4467788889999999999999999844
Q ss_pred HHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 317 EMKSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 317 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
..-+.. +.-. ..|....-.|.+.++...|+.-|+...+.. +.|...|..+..+|...|++..|+++|.+.......
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 333321 0111 123334455677889999999999888764 457788999999999999999999999988765322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-------Hc
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC-----KPDNYSYTAMLNIYGSGGNVDNAIELFEEMS-------EL 462 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~ 462 (710)
+...-.-..-+.+..|.+.+|...+..+...... .--..++..+...+...|-...|..+++.-+ ..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2222222334456789999999888877653210 0112233333333333343334444433332 22
Q ss_pred CCCcCHHHHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLG-----------------------KARRI---D---DLVRVFGVSIDRGVKPDDRLCGCLLSVV 513 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~-----------------------~~g~~---~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 513 (710)
...-+...|-.+.++|. ..+.. | -+.+.+-.-+. ..-+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 21223333333322221 11111 1 01111111111 111233454454444
Q ss_pred Hh----c----CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCC
Q 005178 514 SL----C----ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRN 584 (710)
Q Consensus 514 ~~----~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g 584 (710)
.+ + .+...|+..+++..++..++..+++.||.. ...|+..-.-+.+++..-.+|... .|-.++-.|.+..
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 33 2 222467788888888999999999999876 444656666777888876666544 8888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccccccchhccccc-ChHHHHHHHHHHHH
Q 005178 585 LNERAHELLYLGTLYGLYPGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMW 634 (710)
Q Consensus 585 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~ 634 (710)
+++-|...|..... +.+.+...|-..-... .+|...+++..|-.
T Consensus 865 d~E~A~~af~~~qS------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS------LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhh------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999998652 2333556776432222 35766676666655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.5e-05 Score=80.52 Aligned_cols=358 Identities=13% Similarity=0.076 Sum_probs=187.9
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 262 (710)
.|+..-...+.++...+-+.+-+++++++.-... .-+...-|.||-...+ -+..+..+..+++-.... |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 4555566677777777777777888777764321 1112222333333332 344555666665543321 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
+...+...+-+++|..+|+..- .+....+.||.- .+.++.|.+.-++.. ....|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 2334445566677777766542 344444444432 344555555444432 34456666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
..+|++-|-+. .|...|..++....+.|.+++-.+++...+++...|.+. ..||-+|++.+++.+.++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 66666555332 244556666666666666666666666665554444432 346666666666655554421
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 005178 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV--------- 493 (710)
Q Consensus 423 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------- 493 (710)
.||..-...+.+-|...|.++.|.-+|. ++.-|..|...+...|.+..|...-++
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~ 1254 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKE 1254 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHH
Confidence 2455555555555555555555555443 222333444444444444433332222
Q ss_pred ---------------HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc--ccHHHH
Q 005178 494 ---------------SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF--ENIKEE 556 (710)
Q Consensus 494 ---------------m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~--~~~~~~ 556 (710)
|...++.....-...++..|...|.+++.+.+++...++..-+-.+..-|+-.|.+. ....+-
T Consensus 1255 VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EH 1334 (1666)
T KOG0985|consen 1255 VCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEH 1334 (1666)
T ss_pred HHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 222223334445666778888888888888888888777666665665555443322 111122
Q ss_pred HHHHHHhccCC------CChhhHHHHHHHHHhCCCHHHH
Q 005178 557 FRNVIKDTEVD------ARRPFCNCLIDICRNRNLNERA 589 (710)
Q Consensus 557 a~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A 589 (710)
.+-+..+..+. -....|+-|+-.|.+-..++.|
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 22222222211 0122577777777776666655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-05 Score=71.69 Aligned_cols=302 Identities=14% Similarity=0.129 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H
Q 005178 255 PDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVL---GKMFGESGDYDGIRYVLQEMKSLGVQPNLVV-Y 330 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 330 (710)
.++.-..-+...+...|++..|+.-|...++. |+..|.++ ...|...|+-.-|+.=+..+++. +||-.. -
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 35556667888888999999999999998874 44444444 45788889999999999998875 677653 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDE----KTL------------TALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
..-...+.+.|.+++|..-|+.+++.. |+. ..+ ...+..+.-.|+...|+.....+++. .+
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~ 186 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QP 186 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Cc
Confidence 334556789999999999999998763 321 111 22344556678888888888888886 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHH---
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGC--- 471 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--- 471 (710)
.|...|..-..+|...|.+..|+.=+....+.. ..+..++.-+-..+...|+.+.++...++-++ +.||....
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH
Confidence 477788888888888888888888877777665 46677777777888888888888888888877 34554322
Q ss_pred -HHH---HHHH------HhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 472 -TCL---IQCL------GKARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 472 -~~l---i~~~------~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
-.| ...+ ...+++.+++...+..++....-..+ .+..+-.++...|++.+|++.-.++.+++|++..
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 211 2111 23455666666666665543321122 3334445666677778888877778888887766
Q ss_pred HHHHHHhhcCCcccHHHHHHHHHHhccCCCC
Q 005178 539 FLNLIEDNSTGFENIKEEFRNVIKDTEVDAR 569 (710)
Q Consensus 539 ~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (710)
++---+.++...+.+.++++.+-+....+++
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 5533333333333233444444444444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-05 Score=71.22 Aligned_cols=323 Identities=13% Similarity=0.077 Sum_probs=207.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTII-TCAKRC 235 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li-~~~~~~ 235 (710)
++.-+-.=.++.+|++++....+.. +.+......+..+|-...++..|-..++++... .|...-|...- ..+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 3333344456888888887776653 447777788888889999999999999998875 45555554433 366678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDV--YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRY 313 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 313 (710)
+.+.+|+.+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8899999998887652 222211111222 234678888888888877533 45555555666778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHH---
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-------------DEK--------TLTALI--- 369 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~--------~~~~li--- 369 (710)
-|+...+-|---....||.- -+..+.|+++.|++...++++.|++. |.. .-+.++
T Consensus 166 kFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 99998885433345677754 45567889999999999998877531 211 112233
Q ss_pred ----HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 370 ----KIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 370 ----~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
..+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.-+ .+++.+..+-+.-+...+ +-...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN--PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence 3456788999998888887533 23457777766543322 344555555555555555 455678999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVA-INVMGCTCLIQCLG-KARRIDDLVRVFGVS 494 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 494 (710)
+..-++.|-.++.+-...-.+ .+...|+. +.++. ..-..++|++-++.+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 999999999888764321111 13333433 33332 334556666555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.3e-07 Score=91.03 Aligned_cols=218 Identities=12% Similarity=0.026 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
+.+.|++.+|.-.|+..+..+.. +...|..|...-+..++-..|+..+.+..+.. +.|....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 56789999999999999887554 78889999888899999999999999999887 6788999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCh
Q 005178 452 AIELFEEMSELGVAINVMGCTCLI-----------QCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSLCETS 519 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~ 519 (710)
|+..++.-+...++ |..+. ..+..........++|-++. ..+..+|..+..+|.-.|.-.|.+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999988663321 00000 01111222334455555554 566567888888899899999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++|+..|+.+...+|++..+++-||..++......+++..|-+.+..+|.-. ++..|+-.|...|.+++|.+.|-.++
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999998877754433333444445567777644 66677778888888888887776665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-05 Score=89.50 Aligned_cols=240 Identities=15% Similarity=0.149 Sum_probs=184.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 245 FERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-----PIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 245 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
|++..... +-....|...|......++.++|.+++++++.. +.+. ...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444442 224667899999999999999999999998864 2221 3467788888888888899999999998
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 005178 320 SLGVQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPM-DF 397 (710)
Q Consensus 320 ~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 397 (710)
+. -| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+.=.+- ..
T Consensus 1525 qy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 85 24 346889999999999999999999999875 23467789999999999999999999999988652221 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLI 475 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li 475 (710)
....-.++.-.+.|+.+.+..+|+...... |.-...|+.+|++-.++|+.+.+..+|++.+..++.|- -..|...+
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 345556667778999999999999998776 56778999999999999999999999999999877654 23455555
Q ss_pred HHHHhcCCHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFG 492 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~ 492 (710)
..--.+|+-..+..+=.
T Consensus 1679 eyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred HHHHhcCchhhHHHHHH
Confidence 55555566554444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-05 Score=79.93 Aligned_cols=204 Identities=10% Similarity=0.049 Sum_probs=124.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV--EE 415 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~ 415 (710)
..++.++|+.++.++++.. +-+..+|+.-..++...| ++++++..++++.+.+.+ +..+|+.-...+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3455566666666666542 222334444444444455 456777777766665443 444555444444455542 56
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc---CCH----HHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA---RRI----DDLV 488 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~ 488 (710)
+..+++.+.+.+ +.|..+|+....++...|+++++++.++++++.++. |...|+.....+.+. |.. ++++
T Consensus 127 el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 677777777666 567777777777777777777888888877776654 566666665555443 222 4566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 489 RVFGVSIDRGVKPDDRLCGCLLSVVSLC----ETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 489 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
.+..+++..... |...|+.+..++... +...+|.+.+.++.+.+|+...++..|...+.
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 666666664332 455777777777662 33456777777777778887777777766543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=90.02 Aligned_cols=221 Identities=13% Similarity=0.070 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
|-...-..+...+...|-...|..+|+++. .|..+|.+|+..|+.++|..+..+..+. +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333444567788889999999999998864 4667889999999999999999888874 78999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
+......-+++|.++++....+ .-..+.......++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhh
Confidence 8888888889999998876543 11222222334789999999999988876 56778999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+.. +..+|...+-....-|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999988874322 5788999999999999999999999999988744 4556777777788999999999999988
Q ss_pred HHh
Q 005178 530 QQA 532 (710)
Q Consensus 530 ~~~ 532 (710)
..+
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0012 Score=67.77 Aligned_cols=115 Identities=11% Similarity=0.226 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHH----H
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK-RCNLFDE----A 241 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~----A 241 (710)
+++++..++.+... ++.....|..-|..-.+..+++..+++|.+.+.. ..+...|..-|.--. ..|+... .
T Consensus 35 ~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 35 IDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred HHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 55566666766554 5666777888888888888888888888887765 235666766665222 2333332 2
Q ss_pred HHHHHHHH-HcCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHh
Q 005178 242 IEWFERMY-KTGLMP-DEVTYSAILDV---------YAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 242 ~~~~~~m~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 285 (710)
.+.|+-.. +.|+.+ +-..|+..+.. |....+++...++|.+++.
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 23333333 234333 23345555443 3334456667777777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0016 Score=71.36 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
...+|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+...++..-+|...+ .||-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 4456777777777777777777666443 3666777777777788888877777777766554554443 5777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
+|++.++..+..+++ .-||......+.+-|...+.++.|.-+|..+ .-|..|...+...|.+..
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 777777776654443 2466666666677777777777776666543 235556666666666666
Q ss_pred HHHHH
Q 005178 416 AERLF 420 (710)
Q Consensus 416 A~~~~ 420 (710)
|.+.-
T Consensus 1239 AVD~a 1243 (1666)
T KOG0985|consen 1239 AVDAA 1243 (1666)
T ss_pred HHHHh
Confidence 65443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-05 Score=84.65 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+...|..|+..+...+++++|.++.+...+.... ....|..+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3456777777777777777777777766655221 223333333355566654444333 2333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKD 380 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 380 (710)
......++..+..+...|...+ -+..++..+..+|-+.|+.++|..+|+++++.. +-|..+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3334444444444444454432 244566677778888888888888888887775 45677777777777777 7777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|++++.+.... |....++..+.+++.++.... +.+...+ ..+.+.+.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f----------------~~i~~ki~ 214 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFF----------------LRIERKVL 214 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHH----------------HHHHHHHH
Confidence 77777766543 555667777777777777654 2232222 23333333
Q ss_pred Hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 461 EL-GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVS 514 (710)
Q Consensus 461 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 514 (710)
.. |..--+.++-.+...|...+++++++.+++.+++.... |......++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 23334455666667788888888888888888875433 3444455555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0022 Score=65.88 Aligned_cols=402 Identities=10% Similarity=0.123 Sum_probs=238.5
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+-|..+|+.||+-+..+ .++++.+.++++... .+-....|..-|..-.+..+++....+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67899999999988777 999999999999875 3335678999999999999999999999988876 3467777777
Q ss_pred HHHHHH-cCCHH----HHHHHHHHHHh-CCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC--
Q 005178 264 LDVYAK-SGKVE----EVLSLYERGVA-SGWKP-DPIAFSVLGKM---------FGESGDYDGIRYVLQEMKSLGVQP-- 325 (710)
Q Consensus 264 i~~~~~-~g~~~----~A~~~~~~~~~-~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p-- 325 (710)
++--.+ .|+.. ...+.|+-.+. .|+.+ +-..|+..+.. |..+.+++...++++++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 764433 22322 22334444332 33222 22335544443 344557778888898888642211
Q ss_pred ----CHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHHhcCC
Q 005178 326 ----NLVVYNTLLEAM-------GKAGKPGLARSLFDEMVE--SGLTPDEKT---------------LTALIKIYGKARW 377 (710)
Q Consensus 326 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~ 377 (710)
|-..|..=|+.. -+...+-.|..+++++.. .|+..+..+ |-.+|.---.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111222112211 123456677888877753 343222211 3334432211111
Q ss_pred H--------HHHHHHHHHH-HhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCCHHHH
Q 005178 378 A--------KDALELWERM-RENKWPMDFILYN-----TLLNMCADIGL-------VEEAERLFEDMKLSDYCKPDNYSY 436 (710)
Q Consensus 378 ~--------~~A~~~~~~m-~~~~~~~~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~ 436 (710)
- ....-+|++. .-.+..|++.... ..-+.+...|+ -+++..+++.....-. .-+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~-~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL-KENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 1111222222 1223333322111 11123334444 4556666666654332 3344555
Q ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 005178 437 TAMLNIYGSGG---NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSV 512 (710)
Q Consensus 437 ~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 512 (710)
..+.+---..- ..+....+++++...-..--..+|..+++.-.+..-++.|..+|.++.+.+..+ +..++++++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 55444322222 255666777777653222224567778888888888999999999999888777 45567777776
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhc---cCCCC--hhhHHHHHHHHHhC
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDT---EVDAR--RPFCNCLIDICRNR 583 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~---~~~~~--~~~~~~l~~~~~~~ 583 (710)
|+ .++.+-|.++|+.-.+..++...++ +.|...- ....++.++++. ...++ ..+|+.+++.-...
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-----dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-----DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 65 4666999999999888777766533 4444321 223455566553 22333 35999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005178 584 NLNERAHELLYLG 596 (710)
Q Consensus 584 g~~~~A~~~~~~~ 596 (710)
|+.+.+.++-++.
T Consensus 486 GdL~si~~lekR~ 498 (656)
T KOG1914|consen 486 GDLNSILKLEKRR 498 (656)
T ss_pred ccHHHHHHHHHHH
Confidence 9999998887765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0037 Score=68.26 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=134.8
Q ss_pred HHHHHhcc--CHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH--HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 158 LLILNSLK--FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSL--RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233 (710)
Q Consensus 158 ~~~l~~l~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 233 (710)
.-++..+. ++..|+.-.+.+.++. |+. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|.
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR 88 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH
Confidence 34555554 5888888888877764 332 244444444 6788888888888777665544 7788888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESG------- 306 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g------- 306 (710)
..++.++|..+|++..+. .|+......+..+|.|.+.+.+-.+.--++-+. .+-+...+=++++.+...-
T Consensus 89 d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccc
Confidence 888888888888888765 466777777778888877665433333222221 2233444434444443221
Q ss_pred ---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 307 ---DYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFD-EMVESGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 307 ---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
-..-|.+.++.+.+.+ ---+..-...-...+-..|++++|.+++. ...+.-..-+...-+--+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 1233555555555543 11111122223334455667777777773 333332233344444556666777777777
Q ss_pred HHHHHHHHhCCCC
Q 005178 382 LELWERMRENKWP 394 (710)
Q Consensus 382 ~~~~~~m~~~~~~ 394 (710)
.++-.++..+|..
T Consensus 246 ~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 246 FELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHhCCc
Confidence 7777777776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.9e-05 Score=71.23 Aligned_cols=124 Identities=12% Similarity=0.040 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCC--HHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL-GKARR--IDD 486 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~ 486 (710)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666666655 566677777777777777777777777777664432 556666666653 45555 367
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
|.+++++.++.+.. +...+..+...+.+.|++++|+..++++.+..|...
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777664433 445666666667777777777777777766655443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.8e-06 Score=72.05 Aligned_cols=121 Identities=7% Similarity=-0.011 Sum_probs=87.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.+|++..+.. |+ .+..+...+...|++++|...|+.+...... +...|..+..++.+.|++++|+..|++....
T Consensus 14 ~~~~~al~~~---p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSVD---PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHcC---HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555432 33 3445677777888888888888888775432 6777788888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 498 GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 498 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+.. +...+..+..++...|+.++|+..|+.+.+..|++...+...+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 432 55677778888888888888888888888888888777766654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-07 Score=58.54 Aligned_cols=32 Identities=50% Similarity=0.819 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 322 GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 322 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 33444444444444444444444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-05 Score=74.12 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN-L---VVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
....+..+...+...|++++|...|+++.... |+ . .++..+..++.+.|++++|...|+++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34555556666666666666666666665532 22 1 24455556666666666666666666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
|+.||..+|++||.+|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-05 Score=81.49 Aligned_cols=212 Identities=12% Similarity=0.128 Sum_probs=125.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 307 (710)
+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..+. +||+..|..+.+......-
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 3345566666666666665543 2455566666666666666666666553 4666666666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
+++|.++++..... +-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 66666666654321 11111222233566666666666655432 23445666666666666777777776666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 388 MRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
....... +...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.+
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6653222 45567777777777777777777777766655 34445566666666667777777777766654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0002 Score=80.34 Aligned_cols=240 Identities=10% Similarity=0.077 Sum_probs=145.9
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYS-TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSA 262 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 262 (710)
+.+...+..|+..|...+++++|.++.+...+. .|+...+- .+...+.+.++.+++.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456778899999999999999999999877765 45543332 222256666665554433 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
++.......++.-...++..|.+. .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 333344444554444455555553 2445577778888888888888888888888876 44777888888888888 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 343 PGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 343 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
+++|++++.+.+.. |...+++..+.++|.++...... |... -..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~----------------f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDF----------------FLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchH----------------HHHHHHH
Confidence 88888888777643 44556677777777777665222 2111 1122222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 423 MKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 423 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+...-....-+.++-.+-..|...++++++..+++.+++.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2221101223344445555555666666666666666654333 4444555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.7e-05 Score=69.05 Aligned_cols=158 Identities=18% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
..+-..+...|+-+....+....... .+.|....+.++....+.|++.+|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555555555555555554332 12233444445566666666666666666665543 45566666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
|+++.|..-|.+..+.... +...++.|.-.|.-.|+++.|..++......+ .-|...-..+.-.....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666666654333 44555556666666666666666666666554 34555556666666666666666665
Q ss_pred HHH
Q 005178 456 FEE 458 (710)
Q Consensus 456 ~~~ 458 (710)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00012 Score=68.47 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 366 TALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
..+-..+...|+-+....+........ .-|.......+....+.|++..|+..|.+..... ++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHH
Confidence 445555666666666666666544332 2255556666777777777777777777777665 6777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 446 GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.|+.++|..-|.+..+.... +...++.|...|.-.|+.+.|..++......+.. |..+-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777764332 4556666666677777777777777776654433 445555666666777777777665
Q ss_pred HH
Q 005178 526 IT 527 (710)
Q Consensus 526 ~~ 527 (710)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00026 Score=78.69 Aligned_cols=200 Identities=16% Similarity=0.135 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGI-RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (710)
+.....+=.+.+.-|.-++| .+++.+..+ ++..........+++.-...... ....+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 34444444455666666665 344444442 23333332223333222222222 23445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHH
Q 005178 371 IYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 450 (710)
+..+.|.+++|..+++...+.... +......++..+.+.+++++|...+++..... +.+......+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchH
Confidence 777888888888888887775322 45566667777778888888888888877765 566667777777778888888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+|..+|+++...+. -+..++..+..++...|+.++|...|++..+. ..|...-|+.+
T Consensus 172 ~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 172 QADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 88888888877332 24677777777788888888888888877753 22333444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00046 Score=64.54 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS- 445 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 445 (710)
.-...|+..|++++|++...... +......=+..+.+..+++-|++.+++|.+. .+..|.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKL 182 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHH
Confidence 33445666677777776665522 2222222234445566667777777777652 344455545444433
Q ss_pred ---CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-
Q 005178 446 ---GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED- 521 (710)
Q Consensus 446 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~- 521 (710)
.+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..++++.++...+ ++.+...++.+-...|...+
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 44566777777777553 4466677777777777777777777777777755443 44555555544445554333
Q ss_pred HHHHHHHHHHhCCcHH
Q 005178 522 VGKVITCLQQANPKLV 537 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~ 537 (710)
..+.+.++....|++.
T Consensus 261 ~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 261 TERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHhcCCcch
Confidence 3445555555566554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.7e-05 Score=69.22 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCC--HHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGN--VDN 451 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~ 451 (710)
.++.+++...++...+.+.. |...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 45556666666666665433 67777777777777777777777777777765 5667777777765 356666 477
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
|..++++..+.+.. +...+..+...+.+.|++++|+..|+++++.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777775543 5667777777777788888888888777754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-05 Score=67.78 Aligned_cols=96 Identities=11% Similarity=-0.064 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.+.+. .+...+..+..++
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34455666777788888888888777765 56777777788888888888888888888777543 2667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005178 479 GKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~ 497 (710)
.+.|++++|+..|+..+..
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-05 Score=73.36 Aligned_cols=186 Identities=13% Similarity=-0.004 Sum_probs=121.6
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE-- 257 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-- 257 (710)
+.....+..+...+...|++++|...|+++.... |+. ..+..+..++.+.|++++|+..|+++.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455667777778888899999999988887752 331 45666777888889999999999888876332111
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 258 VTYSAILDVYAKS--------GKVEEVLSLYERGVASGWKPDP-IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLV 328 (710)
Q Consensus 258 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 328 (710)
.++..+..++.+. |++++|.+.|+.+.... |+. ..+..+..... ... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~--------~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA--------G 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH--------H
Confidence 2455555555544 67888888888887652 332 22222211100 000 000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGL--TPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
....+...+.+.|++++|...|+...+..- +.....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678888999999998888876521 223467778888888999999999888887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00037 Score=65.16 Aligned_cols=138 Identities=23% Similarity=0.253 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK--- 374 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 374 (710)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+. .+..|.+.|..+|.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345556666666666555421 2222222233444555556666666666543 133444444444432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 375 -ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 375 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
.+.+.+|.-+|++|-++ ..|+..+.+-...++...|++++|+.+++...... ..+..+...+|.+-...|
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLG 255 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 23455555555555443 34455555555555555555555555555555444 234444444444333333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00029 Score=78.32 Aligned_cols=235 Identities=10% Similarity=0.010 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVL-SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
+......+=.+....|..++|- +++.++.+ ++...+......+++.-...... ....+...+-.|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444444445566677766663 44444432 22222222222333222222222 2345688899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 335 EAMGKAGKPGLARSLFDEMVESGLTPD-EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLV 413 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 413 (710)
....+.|++++|..+++...+. .|+ ......+..++.+.+++++|+..+++....... +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 9999999999999999999986 454 567778889999999999999999999987554 777888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 414 EEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 414 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
++|.++|+++...+ +.+..++..+..++...|+.++|...|++..+.- .+....|+.++ +++..-..++++
T Consensus 171 ~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~ 241 (694)
T PRK15179 171 EQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRR 241 (694)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHH
Confidence 99999999999854 5668999999999999999999999999998752 23445555543 233344455555
Q ss_pred HHHC----CCCCCHHHHHHHHHHHHh
Q 005178 494 SIDR----GVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 494 m~~~----~~~p~~~~~~~ll~~~~~ 515 (710)
+.-. |..........++.-|..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 242 LGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred cCcccccCCCceeeeeHHHHHHHHhh
Confidence 5422 222223344555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-05 Score=67.39 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.++.+.... +.+......+...+...|++++|...|+.+...+. .+...|..+..+|.+.|++++|..++++.++.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444433 33455566677777778888888888887776543 266777777778888888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
. .+...+..+..+|...|++++|.+.|+.+.+..|+...+.
T Consensus 82 p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 P-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 2 2455666677778888888888888888888887766544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0023 Score=65.31 Aligned_cols=139 Identities=19% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
.+...|.+++|+..++.++..- +-|...+......+.+.++.++|.+.++++...... .....-.+.++|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 3445556666666666655441 223344444455556666666666666666554211 14444455556666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|+.+++...... +-|...|..|..+|...|+..++..-..++ |...|+++.|+..+....
T Consensus 393 ai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHH
Confidence 666666655544 455556666666666666655555444332 334555666655555554
Q ss_pred H
Q 005178 496 D 496 (710)
Q Consensus 496 ~ 496 (710)
+
T Consensus 453 ~ 453 (484)
T COG4783 453 Q 453 (484)
T ss_pred H
Confidence 3
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0019 Score=60.14 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 341 GKPGLARSLFDEMVES---G-LTPDEK-TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
.+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666666532 3 334433 34455555667778888888888877653 2122222211222445688888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|+++++.+.+.+ +.|..++-.-+-..-..|+--+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 105 A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 888888888777 677777777777777777777888777777664 44588888888888888888888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCcHH
Q 005178 496 DRGVKP-DDRLCGCLLSVVSLC---ETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 496 ~~~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~ 537 (710)
-. .| ++..+..+...+.-. .+.+-+.++|.+..+++|.+.
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 63 44 334444555544433 345667888888888888443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00034 Score=71.11 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=102.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCE 517 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 517 (710)
..-.+...|++++|+..++.++..-. -|...+......+.+.|+.++|.+.+++++.. .|+ ......+..+|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 33345567788888888888776432 36666677777888888888888888888763 455 445666777888888
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
++.+|+++++.....+|++...+++|+..+...|+..+ .--+....|...|+++.|+..+..+.
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~----------------a~~A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE----------------ALLARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH----------------HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888877665553322 22345667888899999998888875
Q ss_pred Hc
Q 005178 598 LY 599 (710)
Q Consensus 598 ~~ 599 (710)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 43
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=63.80 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
......+...+...|++++|.+.|+.+...+ +.+...|..+...|...|++++|..++++..+.+. .+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 3445555666667777777777777776654 45666777777777777777777777777666432 24566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~ 496 (710)
+|...|++++|+..|++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777666
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.006 Score=56.90 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=121.7
Q ss_pred CChHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHH
Q 005178 201 RQFQLIEQLANEMVS---NE-IELDNIT-YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAILDVYAKSGKVE 274 (710)
Q Consensus 201 g~~~~A~~l~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~ 274 (710)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...- |... +...-.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 455666666666543 23 4455543 4445557777888888888888877652 3222 2211122244468888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 275 EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 275 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
+|+++|+.+++.+ +.|.+++---+.+.-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888775 556677776666777777777887777777664 45688888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 005178 355 ESGLTPDEKTLTALIKIYGKA---RWAKDALELWERMREN 391 (710)
Q Consensus 355 ~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 391 (710)
-.. +.+...+..+...+.-. .+.+.+.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 652 33444444454444333 3566777777777765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=69.38 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=70.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~ 520 (710)
-..+.+++.+|+..|.++++.... |.+-|..-..+|.+.|.++.|++-.+..+. +.|.. ..|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 355677777777777777775433 566666667777777777777777777666 34443 37777777777777777
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+|++.|+++.+++|++..+...|..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 7777777777777777766655554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00041 Score=71.38 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=74.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
.-..++..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++++.++.... +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33445555566667777777777766652 332 333555666666666777776666654322 4555555566666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 269 KSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+.++++.|+.+.+++.... +-+-.+|..|..+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666666642 2233466666666666666666666666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.064 Score=59.00 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=122.2
Q ss_pred HHHHHHhhCCCCCCHHHHH-HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 005178 140 AFLRAITEIPHQPTRENAL-LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI 218 (710)
Q Consensus 140 ~~~~~l~~~~~~~~~~~~~-~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 218 (710)
.+..+++.+++.+.....- ..+-.+++.++|..+++...... ..|..+...+-.+|...++.++|..+|+.....
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 4455566666555433322 23556677888887777665543 347788888888888888888888888888775
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhCC-
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----------KVEEVLSLYERGVASG- 287 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~g- 287 (710)
.|+......+..+|.+.+.+.+-.+.=-+|.+. ..-+...+=++++.+...- -..-|.+.++.+.+.+
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g 185 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG 185 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC
Confidence 566777777777888877766444333333332 1113333333444433321 1334555666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQ-EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 288 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
-.-+..-.......+-..|++++|..++. ...+.-..-+...-+.-++.+...++|.+..++-.++...|
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 11122222233344556677888877773 33322222334444455666666777777777766666654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00047 Score=70.95 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhc
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKA 481 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 481 (710)
++..+...++-.+|.+++.+..+.. +.+......-...|.+.++++.|..+.+++.+. .| +..+|..|..+|.+.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhc
Confidence 3333334444444444444444332 233344444444444445555555555544442 22 233455555555555
Q ss_pred CCHHHHHHHHHHH
Q 005178 482 RRIDDLVRVFGVS 494 (710)
Q Consensus 482 g~~~~A~~~~~~m 494 (710)
|+++.|+..++.+
T Consensus 282 ~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 282 GDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHhcC
Confidence 5555555444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0014 Score=58.13 Aligned_cols=125 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH--HHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD---NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV--MGCTCL 474 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l 474 (710)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+........++. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33334333 3666666666666666654 233 223333445666677777777777777665432221 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
...+...|++++|+..++....... ....+.....+|...|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666677777777777755332222 2334555666777777777777766653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.4e-05 Score=49.23 Aligned_cols=33 Identities=33% Similarity=0.646 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 502 (710)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=68.34 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=64.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRID 485 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 485 (710)
+.+.+++++|+..|.+.++.. +.|.+-|..-..+|++.|.++.|++=.+..+.. .|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 456677777777777777665 566667777777777777777777777666662 233 456777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
+|++.|++.++ +.|+-.+|..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 77777777665 5666555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00078 Score=57.40 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVA--INVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK--PDDRLCGCLL 510 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll 510 (710)
++..++..+.+.|++++|...|.++.+.... .....+..+..++.+.|++++|+..|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666667777777777666653211 11334555666677777777777777766643211 1133455566
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.++.+.|+.++|.+.++.+.+..|+...+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 666677777777777777777666655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0016 Score=57.84 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVE 414 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~ 414 (710)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+.+....++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555432 111 11222233445555555555555555555432221 112333445555555555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
+|+..++..... ......+....+.|.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443221 22333444555555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00063 Score=70.27 Aligned_cols=102 Identities=13% Similarity=-0.011 Sum_probs=53.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 521 (710)
.+...|++++|+..|+++++.... +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555553322 3445555555555555555555555555543211 33345555555555555555
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 522 VGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
|...|+++.+++|++..+...++.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 665555555555555554444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.5e-05 Score=48.33 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.2e-05 Score=48.48 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL 220 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 220 (710)
.+||.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.7e-05 Score=48.18 Aligned_cols=33 Identities=48% Similarity=0.818 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD 361 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 361 (710)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00072 Score=54.42 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
.+...+...|++++|..+++++.+.... +...+..+..++...|++++|.+.|+........ +..++..+..++...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 3344444445555555555544442211 2234444444455555555555555554443211 2234444444555555
Q ss_pred ChHHHHHHHHHHHHhCC
Q 005178 518 TSEDVGKVITCLQQANP 534 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p 534 (710)
++++|...+....+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=65.47 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
.+|..++...-+.+..+.|..+|.+..+.+. .+...|.....+ |...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 3566666666666667777777777765442 233334443333 22345555677777777664 3346667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
.+.+.|+.+.|..+|++.+.. +.++. ..|..++..-.+.|+.+.+.++.+++.+..|+...+....
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777777777777643 22222 3777777777788888888888888877777655444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0054 Score=61.15 Aligned_cols=264 Identities=12% Similarity=-0.031 Sum_probs=126.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPN-LVVYNTLLEAMGK 339 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 339 (710)
......+.+..++.+|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-.+. ++. .....-.-.++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 334566667777778888887777764 334555555666666677777766655544432 211 1133333444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFILYNTL-LNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~ 417 (710)
.++..+|.+.|+.-. .+ ....++..++.+..... +|....+..+ ..++...|++++|.
T Consensus 130 ~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443110 00 01111111111111111 1222333322 23344555666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH-------------HHHHHHHHHHhcCCH
Q 005178 418 RLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM-------------GCTCLIQCLGKARRI 484 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------------~~~~li~~~~~~g~~ 484 (710)
.+--.+.+.+ ..+......-..++-..++.+.|...|++.+..+ |+.. .+..=.+-..+.|++
T Consensus 190 ~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 190 SEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred HHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 5555555443 2222222222223334555566666666555532 2211 111112233456666
Q ss_pred HHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc
Q 005178 485 DDLVRVFGVSIDR---GVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFE 551 (710)
Q Consensus 485 ~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~ 551 (710)
..|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+.+.+++|.....+-.-+.|+...+
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 6666666666532 234444455555555666666666666666666666665555444444444444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00073 Score=69.82 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKT--GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFS 296 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 296 (710)
..+......++..+....+++++..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555555555555556666655555443 111223344566666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 297 VLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655544444445554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0034 Score=67.80 Aligned_cols=70 Identities=11% Similarity=-0.116 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+...|.++.......|++++|...++++++.+ |+...|..+..+|...|+.++|...|+++..++|.+.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 45667777666667788888888888888744 67778888888888888888888888888888887765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00098 Score=68.90 Aligned_cols=124 Identities=16% Similarity=0.089 Sum_probs=99.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 252 GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVAS--GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 252 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
+...+......+++.+....+++++..++-+.... ....-..|..++|+.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33446777777888888888888888888887765 2223345567899999999999999999999899999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
+|.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988877667777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0037 Score=54.62 Aligned_cols=94 Identities=9% Similarity=0.053 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
...+...+...|++++|..+|+-+.... +.+..-|..|.-+|-..|++++|+..|..+...++ -|...+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444555566777777777777777665 45666677777777777777777777777776554 25666666777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSID 496 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~ 496 (710)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=52.95 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...+++..+.... +..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHH
Confidence 3344555556666666666666665543 334455666666666666666666666666554322 3345666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSID 496 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~ 496 (710)
..|++++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.032 Score=55.84 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVA-----INVM-GCTCLIQCLGKARRIDDLVRVFGVSIDR--GVKPD--DR 504 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~ 504 (710)
++..+...+.+.|++++|..+|++....-.. .+.. .|...+-++...|+...|.+.|++.... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455566677777777777777776653221 1221 2333344566677777777777776532 22222 22
Q ss_pred HHHHHHHHHH
Q 005178 505 LCGCLLSVVS 514 (710)
Q Consensus 505 ~~~~ll~~~~ 514 (710)
....|+.+|-
T Consensus 237 ~~~~l~~A~~ 246 (282)
T PF14938_consen 237 FLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455565554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.061 Score=53.94 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=30.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMY 249 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 249 (710)
....+-+..++.+|+..+...++.... +..-|..-...+...|++++|.--.+.-.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 344555666666666666666665322 34444555555555566666654444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0017 Score=52.54 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAG--------KPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|++|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444566666666666666665 556666665555554432 223344555555555555555555555
Q ss_pred HHHHH
Q 005178 369 IKIYG 373 (710)
Q Consensus 369 i~~~~ 373 (710)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0028 Score=65.47 Aligned_cols=87 Identities=11% Similarity=-0.078 Sum_probs=46.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
+...|++++|++.|.++.+.. +.+...|..+..+|...|++++|+..++++++.... +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 344555555555555555544 344555555555555555555555555555553221 34455555555555555555
Q ss_pred HHHHHHHHHH
Q 005178 487 LVRVFGVSID 496 (710)
Q Consensus 487 A~~~~~~m~~ 496 (710)
|+..|++.+.
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0033 Score=57.72 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
.+..+...+...|++++|...|++..+.....++ ...+..+...|.+.|++++|...+++..+.... +...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3444444455555555555555555443210111 234444555555555555555555555442211 23334444444
Q ss_pred HHhcCCHHHH
Q 005178 478 LGKARRIDDL 487 (710)
Q Consensus 478 ~~~~g~~~~A 487 (710)
|...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 4444444333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0051 Score=52.26 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--INVMGCTCLI 475 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li 475 (710)
++..+...+.+.|++++|.+.|..+...... +.....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777654310 011345566777777777777777777777664322 1244566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.++.+.|+.++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=44.58 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 005178 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNE 217 (710)
Q Consensus 189 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 217 (710)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0037 Score=57.16 Aligned_cols=121 Identities=7% Similarity=-0.047 Sum_probs=80.3
Q ss_pred HHHHHHHHHHH-HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 005178 450 DNAIELFEEMS-ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 450 ~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
..+...+..+. ..+..-....|..++..+...|++++|+..|++.+.....+. ..++..+..+|...|++++|.+.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443 222222355667777778888999999999988876533322 247788888999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 527 TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 527 ~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+.+..+.|........++.. +..+...+.+.|++++|...++++
T Consensus 96 ~~Al~~~~~~~~~~~~la~i--------------------------~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVI--------------------------CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHH--------------------------HHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988888776655555542 223333445678877776666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00016 Score=44.56 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0027 Score=62.98 Aligned_cols=131 Identities=13% Similarity=-0.024 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCCHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRE----NKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMK----LSDYCKPDNYS 435 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 435 (710)
|..|...|.-.|+++.|+...+.-.+ .|-+ .....+..+..++.-.|+++.|.+.|+... +.|.-.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34444444445566666655443221 1111 012244455555666666666666555432 22211122344
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSEL-----GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
..+|.+.|.-...+++|+.++.+-+.- +..-....|.+|..+|...|..+.|+.+.+.-+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666666666665543220 111133455556666666666666655554433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0037 Score=62.24 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD-IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
.+|..++....+.+..+.|..+|.+.++.+. .+..+|......-.. .++.+.|..+|+...+.- +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3577777777777778888888888875422 233444444444333 456666888888877764 567777888888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+...|+.+.|..+|++.... +.++ ...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888764 2222 24788888888888888888888888876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0028 Score=55.37 Aligned_cols=90 Identities=6% Similarity=-0.082 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHH
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNE 587 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 587 (710)
+...+...|++++|.++|+.+..++|.+...+-.||.++...|++.+++..+-......|+.+ .+-.++.++.+.|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 333444555555555555555555555555555555554444433333333333333444333 4556667778888888
Q ss_pred HHHHHHHHHHH
Q 005178 588 RAHELLYLGTL 598 (710)
Q Consensus 588 ~A~~~~~~~~~ 598 (710)
.|++.|+.++.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 88888887663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=49.55 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+...+.+.|++++|+..|+++++.... +...+..+..++.+.|++++|..+|+.+.+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345567777777777777777765422 44466677777777777777777777777777765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00043 Score=54.78 Aligned_cols=81 Identities=22% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555544431001223333345555555555555555544 211111 122222334455555555555555
Q ss_pred HHH
Q 005178 491 FGV 493 (710)
Q Consensus 491 ~~~ 493 (710)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.013 Score=53.71 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMD--FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
..+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..... +.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 3455556666666777777777776665432221 3456667777777777777777777777654 44566666677
Q ss_pred HHHHhCCCHHHHHHHHH
Q 005178 441 NIYGSGGNVDNAIELFE 457 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~ 457 (710)
.+|...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 77777666555444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0048 Score=49.99 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKAR--------WAKDALELWERMRENKWPMDFILY 400 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~ 400 (710)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677888888889999988888 888889988888876643 234566677777777777777777
Q ss_pred HHHHHHHHH
Q 005178 401 NTLLNMCAD 409 (710)
Q Consensus 401 ~~li~~~~~ 409 (710)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=58.22 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005178 221 DNITYSTIITCAKRC-----NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAF 295 (710)
Q Consensus 221 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 295 (710)
|-.+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 556666666655432 4455555555556666666666666666655533 2211 001111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
.-| -.+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12234566666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0098 Score=59.49 Aligned_cols=183 Identities=14% Similarity=0.225 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005178 307 DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES----GLTPD-EKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 381 (710)
++++|..+|++. ...|-..|++++|.+.|.+..+. +-... ...|......|.+ .++++|
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~A 93 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEA 93 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHH
Confidence 556666655554 34556667777777777665321 10000 1122222222222 244444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-GNVDNAIELFEEMS 460 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 460 (710)
...+++ .+..|...|++..|-+++..+ ...|... |++++|+..|++..
T Consensus 94 i~~~~~---------------A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~ 142 (282)
T PF14938_consen 94 IECYEK---------------AIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAA 142 (282)
T ss_dssp HHHHHH---------------HHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHH
Confidence 444333 345566777777776665554 4456666 88999999988876
Q ss_pred Hc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 461 EL----GVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-----PDDR-LCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 461 ~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+. |..- -..++..+...+.+.|++++|+++|++....-.. .+.. .+...+-++...|+...|.+.++..
T Consensus 143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 2111 1345677888899999999999999998864332 1222 3334444667789999999999998
Q ss_pred HHhCCcH
Q 005178 530 QQANPKL 536 (710)
Q Consensus 530 ~~~~p~~ 536 (710)
.+..|..
T Consensus 223 ~~~~~~F 229 (282)
T PF14938_consen 223 CSQDPSF 229 (282)
T ss_dssp GTTSTTS
T ss_pred HhhCCCC
Confidence 8877643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=62.59 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLC 506 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 506 (710)
+.+...|.++.-.+...|++++|...++++++.+ |+...|..+...|...|+.++|.+.+++.... .|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 4566778877777777899999999999988854 67888898999999999999999999888764 4443343
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0053 Score=56.26 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 255 PDEVTYSAILDVYAKS-----GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 255 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
.+-.+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 3555565555555432 4455555555555555555555555555554433 2211 00011110
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
..-| -.+-+-|++++++|...|+.||..++..++..+++.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0000 12335567777777777777777777777777765553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0012 Score=49.95 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCC
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANP 534 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 534 (710)
+...|..+...+.+.|++++|+..|++.++.+.. +...|..+..+|...| ++++|++.++++.+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456666667777777777777777777664311 3446666666777777 57777777777766665
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=62.08 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSE----LGVA-INVMGCTCLIQCLGKARRIDDLVRVFGVSID----RGV-KPDD 503 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~ 503 (710)
..|..|.+.|.-.|+++.|+...+.-+. .|-+ .....+..+.+++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4567777777778888888877665332 2211 1234677788888888888888888876542 221 1123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
..+.+|.+.|.-...++.|+.++.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4566667777666666677666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0053 Score=56.08 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIEL--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
....|..+...+...|++++|+..|++.......+ ...+|..+..++...|++++|+..+++..+... .....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 34556666666777777777777777776542221 123566666677777777777777777665421 133445555
Q ss_pred HHHHH
Q 005178 264 LDVYA 268 (710)
Q Consensus 264 i~~~~ 268 (710)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00063 Score=53.82 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 375 ARWAKDALELWERMRENKWP-MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35556666666666554321 1233334456666666666666666655 2221 122333334455666666666666
Q ss_pred HHHHH
Q 005178 454 ELFEE 458 (710)
Q Consensus 454 ~~~~~ 458 (710)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.093 Score=55.93 Aligned_cols=238 Identities=16% Similarity=0.107 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 005178 219 ELDNITYSTIITCAKRCNLFDEAIEWFERMYKT-GLMP--------DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWK 289 (710)
Q Consensus 219 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 289 (710)
.|....|..+.......-.++-|...|-+.... |++. +...-.+=+.+| -|++++|+++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 467788888877766667777777776555432 2211 111112223333 47888888888777654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 290 PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLG-VQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
...|..+.+.|+|-...++++.--... -.--...|+.+...++....|++|.+.|..-... ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 234666777788766666654321100 0011246778888888888888888877654321 124
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
+.+|.+..++++-..+-+.+.+ |....-.+.+++...|.-++|.+.|-+-.. |. ..+..|....+
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHH
Confidence 5566666666655554444433 555666777788888888877776654331 21 23455666666
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 449 VDNAIELFEEMSELGVAINVMGC--------------TCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+.+|.++-++..- |.+.+. .--|..+.+.|+.=+|.+++.+|.
T Consensus 894 W~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 894 WGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 6666666544322 222211 112344566677666666666665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=49.57 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=41.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
.+.|++++|+++|+++...... +...+..+..+|.+.|++++|..+++.+...+|++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3567777777777777654322 4556666777777777777777777777777777655554443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.32 Score=49.07 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+|+..++|++-..+... +-.+..|..++.+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 44555666777888888888866664 58888999999999999999887776432 23557888899999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.+.|+.++|..+..+ +. +..-+..|.++|++.+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999999888876 22 23456778889998888764
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.17 Score=45.18 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cCHHHHHH
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-INVMGCTC 473 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 473 (710)
|++..-..|..++...|+..+|...|++... |+.-.|......+.++....++...|...++.+.+.... -+..+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444444555555566666666666655543 333455555555555555666666666666655543210 01223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+...|...|++.+|...|+..+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 445556666666666666666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.25 Score=47.94 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 369 IKIYGKARWAKDALELWERMREN--KWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33444444444444444444432 1111222333444445555555555444433
|
|
| >smart00463 SMR Small MutS-related domain | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=49.13 Aligned_cols=75 Identities=31% Similarity=0.523 Sum_probs=58.6
Q ss_pred chhcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccc--hhhHHHHHHHHhhhcCCCccccCCCCceE
Q 005178 613 WSLDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKF--SQGLATAFASHVNKLAAPFRQSEGKAGCF 690 (710)
Q Consensus 613 w~~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~g~~ 690 (710)
|..++++++.+.|.+++..|++..+.. + .+....|.||.|.|+. ...++..+...+....-+|.+. .|.|++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~---~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK---G--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc---C--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 677899999999999999888865553 2 2267999999999987 3556888889888777666653 788998
Q ss_pred Eec
Q 005178 691 VAT 693 (710)
Q Consensus 691 ~~~ 693 (710)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 753
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.042 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 005178 404 LNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~ 424 (710)
...|...|++++|..+|++..
T Consensus 45 astlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 45 ASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.37 Score=46.77 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=30.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPDPIAF---SVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
...+.+.|++++|.+.|+.+...- +-+.... -.++.+|.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333445666666666666665542 1112221 23445556666666666666666653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.062 Score=50.48 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-----HH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY-----SA 262 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-----~~ 262 (710)
.+-+.++..+.-.|.+.-...++.+.++...+.+......+.+.-.+.|+.+.|...|++..+..-..|..+. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455666666667777777777777777655556666777777777777777777777766543222222222 23
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 263 ILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 263 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
....|.-.+++.+|...|++++..+ +.|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334445566666667676666553 334444444444444456677777777777664
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.47 Score=47.91 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
.+.-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++-.. + -.++-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 3444555566777777766655553 46777777777777777777766654332 1 134667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
.|+..+|..+...+. +..-+.+|.++|++.+|.+.-.+.
T Consensus 250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777777766622 134566777777777776664443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.56 Score=46.97 Aligned_cols=248 Identities=14% Similarity=0.087 Sum_probs=127.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEK--TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE 417 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 417 (710)
.|+++.|.+-|+.|... |... -...|.-.-.+.|+.+.|..+-+..-+.-.. -...+.+.+...|..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 45666666666665531 1111 1122222233456666666655555443221 2345556666666666666666
Q ss_pred HHHHHHHhCCCCCCCHHH--HHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCcCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 005178 418 RLFEDMKLSDYCKPDNYS--YTAMLNIYG---SGGNVDNAIELFEEMSELGVAINVMG-CTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++.-+....+.++..- -..|+.+-. -.-+...|...-.+..+ +.||... -..-..++.+.|+..++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 666665554443444322 122222211 12234455555555444 4455432 223345677888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH---HHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCC
Q 005178 492 GVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI---TCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVD 567 (710)
Q Consensus 492 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~---~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~ 567 (710)
+.+-+....|+. + .+..+.+.|+ .+..-+ +++..++|++....-...+.-...++. ..|..--+. ....
T Consensus 287 E~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREA 359 (531)
T ss_pred HHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhC
Confidence 887776555543 2 2223445554 333333 344556777765444444332222322 222222222 3456
Q ss_pred CChhhHHHHHHHHH-hCCCHHHHHHHHHHHHHcC
Q 005178 568 ARRPFCNCLIDICR-NRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 568 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 600 (710)
|...+|--|.++-. ..|+-.+++..+-++...-
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 66677777777744 4488888888888775443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.3 Score=43.65 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPDPIAFSVLG 299 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li 299 (710)
++.---.|..++.+.|+..+|...|++...--..-|....-.+..+....+++.+|...++.+.+... ..++...-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33333334444444455555555554444332233444444444444445555555555554444310 01122223344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARS 348 (710)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 348 (710)
+.|...|++.+|..-|+..... -|+...-......+.+.|+.+++..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555555555555443 2333332223333444444444433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.73 Score=49.53 Aligned_cols=318 Identities=14% Similarity=0.069 Sum_probs=169.8
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHH
Q 005178 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEI--ELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 162 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~ 239 (710)
.-.+++++|..++-.+.++ ...|..+.+.|+|-...++++.-- .+. ..-...|+.+...+.....|+
T Consensus 745 ~~~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred hhhcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777655432 235677788888877776664311 111 011357778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|.+.|..-.. ....+.+|.+..++++-+.+-..+. -+....-.+..++.+.|.-++|.+.|-+..
T Consensus 814 ~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc
Confidence 88888765322 1345666667677766665555543 355666677888888888888887775543
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL--------------TALIKIYGKARWAKDALELW 385 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~ 385 (710)
. |. .-+..|...++|.+|.++-+... -|...+. .--|..+.+.|+.-+|.+++
T Consensus 880 ~----pk-----aAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 880 L----PK-----AAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred C----cH-----HHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 2 21 24456667777777776655432 1111111 12356778888877777777
Q ss_pred HHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 386 ERMREN----KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 386 ~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+|-+. +.++-..--.-++.+ .-..+..++.+-.+.....|. ..+... +...|-..++-++.+..-.
T Consensus 947 ~qmae~e~~K~~p~lr~KklYVL~A-lLvE~h~~~ik~~~~~~~~g~-~~dat~-------lles~~l~~~~ri~~n~Wr 1017 (1189)
T KOG2041|consen 947 SQMAEREQEKYVPYLRLKKLYVLGA-LLVENHRQTIKELRKIDKHGF-LEDATD-------LLESGLLAEQSRILENTWR 1017 (1189)
T ss_pred HHHhHHHhhccCCHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhcCc-chhhhh-------hhhhhhhhhHHHHHHhhhh
Confidence 777543 333221111111111 112233444444455554442 112111 2233334444444443221
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR-GVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
......|..|.+--...|.++.|++.--.+.+. .+-|...+|..+.-+-+....+...-+.|-++
T Consensus 1018 ---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1018 ---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred ---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 012334444444455678888887765555432 35555666665544444444444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.64 Score=50.52 Aligned_cols=301 Identities=17% Similarity=0.115 Sum_probs=151.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005178 191 NVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL--FDEAIEWFERMYKTGLMPDEVTYSAILDVYA 268 (710)
Q Consensus 191 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 268 (710)
..+|+-+...+.+..|+++-..+-..-.. ....|.....-+.+..+ -+++.+.+++=.+.... ....|..+..-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHH
Confidence 34566677778888888877665433211 13455555555555422 12333333332222222 3445666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 269 KSGKVEEVLSLYERGVASGWK----PDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
.+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+.+. .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 788888888887653332211 12233445556666777777777776666542 1111111111 1112
Q ss_pred HHHHHHHHHHH----------------------------------CCCCCCHHHHHHHHHHHHhcCCHH---HH------
Q 005178 345 LARSLFDEMVE----------------------------------SGLTPDEKTLTALIKIYGKARWAK---DA------ 381 (710)
Q Consensus 345 ~A~~~~~~m~~----------------------------------~g~~p~~~~~~~li~~~~~~g~~~---~A------ 381 (710)
.|..+|.+..+ .|..|+. ......|.+..... +|
T Consensus 590 ~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 590 LALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 22222222211 1112221 12223333332211 11
Q ss_pred -HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 382 -LELWERMRE-NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 382 -~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
+++.+.+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 111111111 1222222334444555666677777777666655 467777777777777777777666655443
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 460 SELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 460 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
. ....|.-++.+|.+.|+.++|.+++-+.-. .. -.+.+|.+.|++.+|.++
T Consensus 742 k------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 742 K------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 2 245566667777777777777777754311 11 355667777776666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.084 Score=44.54 Aligned_cols=92 Identities=21% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKIYGKARWAKDALELWERMRENKWP--MDFILYNTLLNMCA 408 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~ 408 (710)
+..++-..|+.++|+.+|++....|+... ...+..+...|...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 33445555666666666666666554433 223444555566666666666666665543211 01112222233445
Q ss_pred HcCCHHHHHHHHHHHH
Q 005178 409 DIGLVEEAERLFEDMK 424 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~ 424 (710)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5666666666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0072 Score=44.91 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+...|++++|...|+++++.... +...+..+..++.+.|++++|+.+|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443211 33344444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.044 Score=53.61 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV-KP-DDRLCGCL 509 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l 509 (710)
..|...+..+.+.|++++|...|+.+++...... ...+-.+..+|...|++++|+..|+.+++.-. .| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555445566777777777777776432211 24566677777778888888888887774311 11 13344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
..++...|+.++|.++|+.+.+..|+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 66677788888888888888877776543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0067 Score=45.53 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444333 23344444444444444444444444444433
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0093 Score=44.91 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-RIDDLVRVFGVSI 495 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 495 (710)
..|..+...+...|++++|+..|++.++.+.. +...|..+..+|.+.| ++++|++.|++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443211 3334444444444444 3444444444443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.19 Score=53.29 Aligned_cols=38 Identities=32% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 312 RYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 312 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
..-++++.++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 334556666666566543 34555666677777666643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.091 Score=50.94 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
|...|..|..+|...|+++.|..-|.+..+.. +++...+..+..++.... .-.++..+|++++..+.. |+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 45555555555555555555555555555543 344444444444432211 223455555555553322 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.|...+...|++.+|...|+.|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444555555555555555555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.66 Score=43.90 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH---
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML--- 440 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li--- 440 (710)
+.+.++..+.-.+.+.-....+++.++...+.++.....|...-.+.|+.+.|...|++..+... +-|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 34556666666777777888888888877677888888888888888888888888887766543 44444444433
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 441 --NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 441 --~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
..|.-.+++..|...+.+....+.. |....|.-.-+..-.|+..+|++.++.|... .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 2345567777777777777665433 4555555555555667788888888887763 34444333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.092 Score=55.47 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHH---------HHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCC
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLAN---------EMVSNEIELDNITYSTIITCAKRCNLF--DEAIEWFERMYKTGLMP 255 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~---------~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~ 255 (710)
.+.+.+-+-.|...|.+++|..+-- .+... ..+.--++..=.+|.+..+. -+.+.-++++.++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3444555555666676666654311 11000 01222333333455544433 34444556677777666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERG 283 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 283 (710)
+.... ...++-.|.+.+|-++|.+-
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 65433 33445567777777776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=44.42 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..|.+.+++++|+++++.++..+.. +...+.....++.+.|++++|.+.|+.+.+..|+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4566777777777777777764322 344566666677777777777777777777777665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1 Score=45.16 Aligned_cols=120 Identities=10% Similarity=0.078 Sum_probs=72.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCc-CHHHHHHHHHHHHhc
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-GVAI-NVMGCTCLIQCLGKA 481 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~ 481 (710)
..++.+.|++.++-.+++.+-+.. |.+..+.. ..+.+.|+ .++.-+++..+. .++| |..+-..+..+-...
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~e---PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAE---PHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcC---CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 456777788888888888777654 34333322 22334444 333333333221 1233 456666677777778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHh
Q 005178 482 RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CETSEDVGKVITCLQQA 532 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 532 (710)
|++..|..--+.... ..|....|..|...-.. .|+-.++...+.+..+.
T Consensus 343 ~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 343 GEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 888777766666554 56777777777666544 38877788777777654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.2 Score=45.54 Aligned_cols=397 Identities=11% Similarity=0.083 Sum_probs=207.2
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
|.|..+|-.||..|..+|..++..+++++|..- .+--...|..-|++-...+++.....+|.+.+... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 567888999999999999999999999998753 23345678888887777788888888888887763 346666666
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHh-CCCCC-CHHHHHHHHHHH---H------hcCCHHHHHHHHHHHHHCCCCCC
Q 005178 264 LDVYAKSGKV------EEVLSLYERGVA-SGWKP-DPIAFSVLGKMF---G------ESGDYDGIRYVLQEMKSLGVQPN 326 (710)
Q Consensus 264 i~~~~~~g~~------~~A~~~~~~~~~-~g~~~-~~~~~~~li~~~---~------~~g~~~~A~~~~~~m~~~g~~p~ 326 (710)
++--.+.+.. ....+.|+-.+. .++.| ....|+..+..+ - .+.++|...+.+.+|....+. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~-n 194 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMG-N 194 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccc-c
Confidence 6554443311 111233333332 22222 233344433322 1 233455566667776653211 1
Q ss_pred H-HHHH------HHHHHHHH-------cCCHHHHHHHHHHHHH--CCCC----CCHHHHH-----------HHHHHHHhc
Q 005178 327 L-VVYN------TLLEAMGK-------AGKPGLARSLFDEMVE--SGLT----PDEKTLT-----------ALIKIYGKA 375 (710)
Q Consensus 327 ~-~~~~------~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~----p~~~~~~-----------~li~~~~~~ 375 (710)
. ..|+ .=++-... .--+-.|...+++... .|+. .+..+++ ..|.--...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 1 1121 11111110 1123456666666543 2321 1222222 122211111
Q ss_pred C-----C-H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 376 R-----W-A-KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 376 g-----~-~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
| + . ...--+|++.... +.....+|----.-+...++-+.|......-.+. .|.... .+-..|.-..+
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~---spsL~~--~lse~yel~nd 348 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM---SPSLTM--FLSEYYELVND 348 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC---CCchhe--eHHHHHhhccc
Confidence 1 0 1 1111222332221 1112223333333334455666666555443322 122111 11111111111
Q ss_pred HHHHHHHHHHHHH--------------cCC---------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005178 449 VDNAIELFEEMSE--------------LGV---------------AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG- 498 (710)
Q Consensus 449 ~~~A~~~~~~m~~--------------~~~---------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 498 (710)
-+.....|+...+ .+. .-=..+|..+++.-.+..-++.|..+|-++.+.|
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 1111111111100 011 0123456777777778788899999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH----HHHHhhcCCcccHHHHHHHHHHhc--cCCCC--h
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL----NLIEDNSTGFENIKEEFRNVIKDT--EVDAR--R 570 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~----~~L~~~~~~~~~~~~~a~~~~~~~--~~~~~--~ 570 (710)
+.++..++++++..++ .|+..-|-++|+.-....||....+ ..|... + ..+.|..+++.. ..+.+ .
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i----n-de~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI----N-DEENARALFETSVERLEKTQLK 502 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh----C-cHHHHHHHHHHhHHHHHHhhhh
Confidence 5566668888887665 4666889999998888888876543 333332 2 345566666632 11222 4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 571 PFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 571 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
++|..+|+--.+.|+...+..+=+++
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 58999999999999998776555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.051 Score=54.69 Aligned_cols=121 Identities=8% Similarity=-0.054 Sum_probs=83.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
-...|.+.|++..|..-|++....= . |.+.-+.++...... .-..++..+..+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l---~-----------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL---E-----------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh---h-----------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhh
Confidence 3556777777877777777765421 0 111111122111111 22346777888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
++.+|++..++.+..+. +|.....-=..+|...|+++.|+..|+++.++.|++..+-+-|..+
T Consensus 272 ~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred hHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999987643 3555666668899999999999999999999999998777666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=49.33 Aligned_cols=118 Identities=11% Similarity=-0.037 Sum_probs=82.8
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---RIDDLVRVFGVSI 495 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~ 495 (710)
-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+... +|...+..+..++.... ...++..+|++++
T Consensus 144 ~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444444 67888899999999999999999999988887432 35666666666554332 2457888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 496 DRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 496 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
..+.. |......|...+...|++.+|...++.|.+..|.+....
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 74322 444566677788888999999999988888776655433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.63 Score=43.84 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 266 VYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
.+...|++.+|...|+.+.... -+--....-.++.++.+.|++++|...++++.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555554431 011122333444555555555555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.15 Score=45.13 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCcCHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-----LGVAINVMG 470 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 470 (710)
....++..+...|++++|..+...+.... |.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556667777888888888888887776 56777888888888888888888888877643 466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.26 Score=43.51 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=64.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
--+...|++++|+.+|.-+...+ +-+..-|..|..+|-..+++++|+..|......+. -|...+-....+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33456788888888888777766 45666677777777788888888888877665543 2455555667778888888
Q ss_pred HHHHHHHHHHHH
Q 005178 485 DDLVRVFGVSID 496 (710)
Q Consensus 485 ~~A~~~~~~m~~ 496 (710)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888877766
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.68 Score=43.62 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDD----RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~ 520 (710)
+..-|.+.|.+..|+.-++.+++. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 445566677777777777666643 1222 23344555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.099 Score=51.18 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD--EVTYSAILDVYAKSGKVEEVLSLYERGVASG--WKPDPIAFSVL 298 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~l 298 (710)
..|...+..+.+.|++++|+..|+.+++...... ...+..+...|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3444444444555677777777777666532211 2455666667777777777777777776531 11123444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 005178 299 GKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
...|...|+.++|..+|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666777777777777777664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.05 E-value=2.1 Score=43.85 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 192 VTMKSLRFGRQFQLIEQLANEMVSNE---IELDNITYSTIITCAKR---CNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
.++-.|....+++..+++.+.+...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446888889999999998887651 11111111122235556 7888899998888666655667788877776
Q ss_pred HHHHc---------CCHHHHHHHHHHHHh
Q 005178 266 VYAKS---------GKVEEVLSLYERGVA 285 (710)
Q Consensus 266 ~~~~~---------g~~~~A~~~~~~~~~ 285 (710)
.|-.. ...++|+..|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 66331 124555555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.3 Score=45.33 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.-.+..++.++.-.|+.++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 333444455555555555555555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=45.68 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=75.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
....-+...|++++|..+|.-+.-.+.. |..-|..|..+|-..+++++|+..|......+.. |+..+-....+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444456899999999999998876554 6777888999999999999999999988765432 4555666788899999
Q ss_pred ChHHHHHHHHHHHHhCCc
Q 005178 518 TSEDVGKVITCLQQANPK 535 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~ 535 (710)
+.+.|...|+.+.+ +|.
T Consensus 120 ~~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 120 KAAKARQCFELVNE-RTE 136 (165)
T ss_pred CHHHHHHHHHHHHh-Ccc
Confidence 99999999988876 344
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.032 Score=43.15 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-cC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSEL----GVA-IN-VMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+|+.+...|...|++++|+..|++..+. |-. |+ ..++..+..+|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555555431 100 11 334444555555555555555555444
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.84 E-value=4.1 Score=47.12 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhc
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVM--GCTCLIQCLGKA 481 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~ 481 (710)
.+-+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 33334455555555555544321 12345566666666666666655431 1211 124455556666
Q ss_pred CCHHHHHHHHHHHH
Q 005178 482 RRIDDLVRVFGVSI 495 (710)
Q Consensus 482 g~~~~A~~~~~~m~ 495 (710)
++.-+|-++..+..
T Consensus 1013 ~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYL 1026 (1265)
T ss_pred ccchhHHHHHHHHh
Confidence 66666666665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.029 Score=37.74 Aligned_cols=41 Identities=5% Similarity=0.010 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
++..+..+|.+.|++++|+++|+++.+..|++..+...|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56678888889999999999999999999988887776654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.07 Score=40.54 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
|.+.+++++|.+++++++..+.. +...|.....++.+.|++++|...|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444443221 333333344444444444444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=2 Score=40.75 Aligned_cols=205 Identities=18% Similarity=0.087 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVES-GLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN- 405 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~- 405 (710)
..+......+...+++..+...+...... ........+..+...+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444555555555555555444431 112233344444444455555555555555555432222 111111122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
.+...|+++.|...+.+....... ......+......+...++.+.+...+.++...........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 555666666666666666442100 0123333334444556666677777666666532211345566666666666677
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 485 DDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+.|...+...... .|+ ...+..+...+...+..+++...+.......|.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777766653 222 233333444444555667777777766666665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.047 Score=42.21 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDR--GVK---PD-DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
..+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..+|...|++++|.+++++..++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357888999999999999999999998843 122 22 347788889999999999999999887653
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.4 Score=45.95 Aligned_cols=86 Identities=16% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
..+|.++-++..+.+.. |......+..++...|+++.|...|++... +.||.. +|....-.+..+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566666666665443 666666666666666777777777777665 344433 44444445556777777777777
Q ss_pred HHHHhCCcHH
Q 005178 528 CLQQANPKLV 537 (710)
Q Consensus 528 ~~~~~~p~~~ 537 (710)
+..+++|.-.
T Consensus 397 ~alrLsP~~~ 406 (458)
T PRK11906 397 KSLQLEPRRR 406 (458)
T ss_pred HHhccCchhh
Confidence 7777777643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.2 Score=42.40 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH----
Q 005178 332 TLLEAMGKAGKPGLARSLFDEMVESGL-----TPDEKTLTALIKIYGKARWAKDALELWERMRE----NKWPMDFI---- 398 (710)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~---- 398 (710)
+|..++...+.++++++.|+...+... .....+|..|...|.+..++++|.-+..+..+ .++. |..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHH
Confidence 355566666667777777776554211 11234566777777777777777665554432 2222 211
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 399 --LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 399 --~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
....|.-++-..|.+..|.+.-++..+.....-|. .....+.+.|...|+.+.|+.-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12233445566777777777766654432212233 344567777888888888887777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.08 Score=46.94 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444555555555555555555442 334555555555555555555555555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.27 Score=41.89 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCcCHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-LGVAINVMGCTCLIQC 477 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~ 477 (710)
.|+..+..+++.+|+..|++..|+++.+...+ .+++.+..+|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45555555555555555555555555555433 2444445555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.19 Score=52.01 Aligned_cols=65 Identities=12% Similarity=-0.088 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN---YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
+...++.+..+|...|++++|+..|++..+.+ +.+. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677777777777777777777777777654 2223 34777777777777777777777777763
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.5 Score=43.49 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=71.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSEL-----GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID----RGVKPDDRLCG 507 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~ 507 (710)
.+|..++...+.++++++.|+...+. +.-....+|..|...|.+..++++|+-+..+..+ .+++.-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 44566666677777777777776542 1112245677777778888888877766665543 23221111222
Q ss_pred H-----HHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh-hHHHHHHHHH
Q 005178 508 C-----LLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP-FCNCLIDICR 581 (710)
Q Consensus 508 ~-----ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~ 581 (710)
+ |..++-..|...+|.+.- +||-++--.++..+--. ..-++.|.|+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C----------------------------~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECC----------------------------EEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHH----------------------------HHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 2 222333344444443333 33433333333332211 3356778888
Q ss_pred hCCCHHHHHHHHHHH
Q 005178 582 NRNLNERAHELLYLG 596 (710)
Q Consensus 582 ~~g~~~~A~~~~~~~ 596 (710)
..|+.|.|..-++.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888877666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.9 Score=39.57 Aligned_cols=202 Identities=18% Similarity=0.099 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIK 370 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 370 (710)
...+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344455555555556666555555555431 112233444455555555555666666666655432222 111112222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhC
Q 005178 371 -IYGKARWAKDALELWERMRENKW--PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-DNYSYTAMLNIYGSG 446 (710)
Q Consensus 371 -~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 446 (710)
.+...|+++.|...|.+...... ......+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 56666777777777776644211 1123333344444566777788888877777654 33 466777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
++++.|...+......... ....+..+...+...|..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888877763222 2344444444455666788888888777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.08 E-value=4.8 Score=41.41 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHH-HHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMG-CTCL 474 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l 474 (710)
-..+|...+..-.+..-++.|..+|-+..+.++..+++..++++|..++. |+..-|..+|+--... -||... -+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 45667777877777788888888888888888667888888888886654 6677788888764442 234333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+.-+...|+-..|..+|+..+.. +.-+ ..+|..++..-..-|+...+..+-+.+...-|....
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 66677888888888888865532 2222 347888888888888888888888888888777644
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.97 E-value=5.2 Score=41.29 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCc----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPME----TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT--CAK 233 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~--~~~ 233 (710)
++...+++.+|..+|.++-....-.|. ....+.++++|... +.+.....+.+..+. .| ...|-.+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 445555677777777776544221111 12234555555433 444444444444433 12 222333333 233
Q ss_pred HcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH
Q 005178 234 RCNLFDEAIEWFERMYKT--GLMP------------DEVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKPDPIAF 295 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~~~~ 295 (710)
+.+.+++|++.+...... +..+ |...=+..+..+...|++.++..+++++... .+.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 566677777776665544 2211 1112244555666777777777776666543 233566666
Q ss_pred HHHHHHHHh
Q 005178 296 SVLGKMFGE 304 (710)
Q Consensus 296 ~~li~~~~~ 304 (710)
+.++-++++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.2 Score=47.71 Aligned_cols=30 Identities=37% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAM 337 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 337 (710)
++=....++.|.+.|++.|..+|+.|++.+
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 333444445555555555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.45 Score=40.58 Aligned_cols=53 Identities=8% Similarity=0.007 Sum_probs=41.2
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSL 515 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 515 (710)
...|+..+..+++.+|+..|++..|+++.+... ..++..+..+|..|+.=+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456788888888888888888888888888877 56777777788887764443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.6 Score=43.00 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=100.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN---KWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++... +++.....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456677777777777654 3566777777777788888888777777777654 222222222333444557788888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---GVAINVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
|++.-++..+.+ +.|...-.++...+...|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888888887776 577777788888888888888888876654331 000012234444445666788888888887
Q ss_pred HHH
Q 005178 493 VSI 495 (710)
Q Consensus 493 ~m~ 495 (710)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.2 Score=48.02 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=58.3
Q ss_pred HHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH
Q 005178 189 FYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTG---LMPDEVTY 260 (710)
Q Consensus 189 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~ 260 (710)
.|+.++..+.- ....+.|.++++.+..+ -|+...|...-. .+...|++++|++.|++..... .+.....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444432 45677888888888876 577776665554 6667788888888888655321 01122333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVAS 286 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~ 286 (710)
--+.-.+.-.++|++|...|.++.+.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 34444555666777777777766654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.1 Score=37.46 Aligned_cols=40 Identities=3% Similarity=-0.044 Sum_probs=16.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAK 233 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~ 233 (710)
++..+...+.+......++.+...+. .+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33333333444444444444443331 23334444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.5 Score=44.05 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 378 AKDALELWERMRE-NKWPMD-FILYNTLLNMCAD---------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 378 ~~~A~~~~~~m~~-~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++-+...+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhh
Confidence 4567777777762 123333 2333333322221 234567788888888887 68888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHH
Q 005178 447 GNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a 522 (710)
|+++.|...|++....+ || ..+|......+.-+|+.++|.+.+++.++ ..|... +....+..|...+- ++|
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~-~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPL-KNN 426 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCch-hhh
Confidence 88999999999988843 54 45566666667778999999999998765 334322 33334446666665 677
Q ss_pred HHHHHH
Q 005178 523 GKVITC 528 (710)
Q Consensus 523 ~~~~~~ 528 (710)
+++|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 766544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.37 Score=49.88 Aligned_cols=68 Identities=16% Similarity=-0.065 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF--ILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 359 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
+.+...++.+..+|.+.|++++|+..|++.++.+..... .+|..+..+|...|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345778999999999999999999999999886443221 46899999999999999999999999875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.7 Score=46.76 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHHHhcCCHHH
Q 005178 411 GLVEEAERLFEDMKLSDYCKPDNYSYTA-MLNIYGSGGNVDNAIELFEEMSELG---VAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
...+.|.++++.+.+.- |+...|.. -...+...|++++|++.|++..... .+.....+--+..++.-.+++++
T Consensus 247 ~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45666777777766543 45444433 3345556677777777777544311 11233445555666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCh-------HHHHHHHHHHHH
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLS-VVSLCETS-------EDVGKVITCLQQ 531 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~-------~~a~~~~~~~~~ 531 (710)
|...|..+.+.. .....+|..+.. ++...|+. ++|.++|+++.+
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777777532 223444444333 33446665 677777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.74 E-value=3.5 Score=40.14 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 268 AKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
...|++.+|..+|+...... +-+...--.|+.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555444431 122233334444444444444444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=46.63 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 220 LDNITYSTIITCAKR-----CNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIA 294 (710)
Q Consensus 220 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 294 (710)
-|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 355666666555433 24445555555666666666666666666655433211 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 342 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 342 (710)
+....-.|-+ +-+-+++++++|...|+.||..+-..|++++++.+.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 123355666666666666666666666666655543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.55 E-value=1 Score=47.79 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred HHcCCHHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 233 KRCNLFDEAIEWFE--RMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 233 ~~~g~~~~A~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
.-.++++++.++.+ ++.. . -...-.+.++..+-+.|..+.|+++-..-. .-.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N--IPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c--CChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHH
Confidence 34566666655553 1111 0 123445566666666666666665533221 11233445566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
|.++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 65554332 2455666666666666666666666655432 34444555555555555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 391 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 422 (710)
.|- ++....++...|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 321 33334444445555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.2 Score=45.27 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=83.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGL 412 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 412 (710)
-.+.|.+.|++..|..-|+..+.. +. |.+.-+.++..... .+ -...++.+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-AL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhhhh
Confidence 346788888888888888876642 00 11111112211111 11 22346667777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHH-HHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDD-LVRV 490 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~-A~~~ 490 (710)
+..|++..+...+.+ ++|+.....-..+|...|+++.|+..|+++++. .|+ -..-+.|+.+-.+..+..+ ..++
T Consensus 273 ~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred HHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777 677777777788888888888888888888773 343 3333444444334333332 3555
Q ss_pred HHHHH
Q 005178 491 FGVSI 495 (710)
Q Consensus 491 ~~~m~ 495 (710)
|..|.
T Consensus 349 y~~mF 353 (397)
T KOG0543|consen 349 YANMF 353 (397)
T ss_pred HHHHh
Confidence 66555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.51 E-value=2.1 Score=36.12 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
....++.+...|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344555666666666666666665433 466666666666666666666666666666665543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.1 Score=36.31 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=7.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWER 387 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~ 387 (710)
++..|.+.+.++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33333334444444443333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.41 E-value=3.3 Score=43.33 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVA-INVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
.+..++.+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455556666666666665542211 12334455556666666666666665554
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.55 Score=49.75 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 321 (710)
+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 444555555555555555555555554432 334444444555554444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.34 E-value=7.4 Score=40.22 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..+|..++..+-+.|.++.|...+..+...+.. .........-+......|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666677777777666666653310 01233334444555566666666666666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.15 E-value=9.7 Score=40.89 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
+..+|...++--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++....+.-++-...+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666666666667776666666665431 001123344444444444666666666655544322222222111122
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+...|++..|..+++.+.+.-|+...
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhh
Confidence 234456677777777766654466544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.95 E-value=7.4 Score=38.75 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 293 IAFSVLGKMFGESGDYD---GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
.++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+++.+++..|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655543 3444555554332 112334444455555567777777777777654
|
It is also involved in sporulation []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.2 Score=42.79 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=48.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHhcCChH
Q 005178 445 SGGNVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSID-RGVKPDD-RLCGCLLSVVSLCETSE 520 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~g~~~ 520 (710)
+.|++..|...|...++....- ....+--|..++...|++++|..+|..+.+ .+-.|.. ..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3444555555555555532110 122333355556666666666666655553 2222221 34444555555666666
Q ss_pred HHHHHHHHHHHhCCcHHHH
Q 005178 521 DVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~ 539 (710)
+|...|+++.+.-|+....
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 6666666666666655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.75 E-value=3.7 Score=34.69 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
.+..+...|+-+.-.+++.++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444443321 3344444444444444444444444444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.71 E-value=9.8 Score=39.40 Aligned_cols=393 Identities=12% Similarity=0.064 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHH--HHccCChHHHHHHHHHHHHC--CCCC------------CHHHHHHHHH
Q 005178 167 WQKSYFFFNWIKSQNLFPMETIFYNVTMKS--LRFGRQFQLIEQLANEMVSN--EIEL------------DNITYSTIIT 230 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~p------------~~~~~~~li~ 230 (710)
.+.-...+..+++..+..+ |-.+..+ +-+.+.+++|.+.+.....+ +..+ |...=+..+.
T Consensus 61 ld~Me~~l~~l~~~~~~s~----~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 61 LDLMEKQLMELRQQFGKSA----YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred HHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 4444444455555543222 3333333 35788899999888777654 2221 2233345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhC-----
Q 005178 231 CAKRCNLFDEAIEWFERMYKT----GLMPDEVTYSAILDVYAKSGK---------------VEEVLSLYERGVAS----- 286 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~---------------~~~A~~~~~~~~~~----- 286 (710)
++...|++.++..++++|... ...-+..+|+.++-++++.-- ++.+.-...+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 888999999999999888764 334688899887776655321 12222222222211
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 005178 287 -GWKPDPIAFSVLGKMFGES--GDYDGIRYVLQEMKSLGVQPNLV-VYNTLLEAMGKAGKPGLARSLFDEMVESGLT--- 359 (710)
Q Consensus 287 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 359 (710)
.+.|.......++....-. .+..--.++++.-...-+.|+-. +...|+..+.+ +.+++..+-+.+....+.
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 1223333333333322211 11112222222222222344432 23344444433 444444444433322111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH----HcCCHHHHHHHHHHHHhCC
Q 005178 360 -PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL-------YNTLLNMCA----DIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 360 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~~~~----~~g~~~~A~~~~~~~~~~~ 427 (710)
.=..+|..++....+.++-..|.+.+.-+.-.. |+... -..+.+..+ ...+...-+.+++.+...+
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 123467778888888888888888877766532 22111 112222222 1123334445555554433
Q ss_pred CCCCCHH-HHHHHHH---HHHhCCC-HHHHHHHHHHHHHcCCCcCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHH
Q 005178 428 YCKPDNY-SYTAMLN---IYGSGGN-VDNAIELFEEMSELGVAINVMGCTCLI----QCLGK---ARRIDDLVRVFGVSI 495 (710)
Q Consensus 428 ~~~~~~~-~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~ 495 (710)
+ |.. .-.-|+. -+.+.|. -++|+.+++.+.+... -|..+-|.+. .+|.+ ...+.+-+++-+-+.
T Consensus 373 i---DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~ 448 (549)
T PF07079_consen 373 I---DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT 448 (549)
T ss_pred c---cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 221 2222222 2445555 6778888888776311 1333322222 22322 122333444444444
Q ss_pred HCCCCCCH----HHHHHHHHH--HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCC
Q 005178 496 DRGVKPDD----RLCGCLLSV--VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDAR 569 (710)
Q Consensus 496 ~~~~~p~~----~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (710)
+.|+.|-. ..-|.|..| +...|++.++.-+-.-+.++.| ...+..++|-|..... ..++|.+++..++. +
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-~Y~eA~~~l~~LP~--n 524 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-RYQEAWEYLQKLPP--N 524 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-hHHHHHHHHHhCCC--c
Confidence 66776633 244444433 3456777777666555667777 5566677777665444 66777777777654 3
Q ss_pred hhhHHH
Q 005178 570 RPFCNC 575 (710)
Q Consensus 570 ~~~~~~ 575 (710)
..+|++
T Consensus 525 ~~~~ds 530 (549)
T PF07079_consen 525 ERMRDS 530 (549)
T ss_pred hhhHHH
Confidence 335544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=5.7 Score=39.26 Aligned_cols=153 Identities=11% Similarity=0.056 Sum_probs=98.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDP----IAFSVLGKMFGESGDYD 309 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~ 309 (710)
..|+..+|-..++++++.- +.|...++..=++|.-.|+.+.-...++++... +.+|. .+...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567777777777777753 337777777778888888888888888887754 23443 33334444556788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWE 386 (710)
Q Consensus 310 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 386 (710)
+|.+.-++..+.+ +.|...-.++...+--.|+..++.++..+-...=-..+ ..-|--..-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888887754 34666777778888888888888877655432100000 1112222233455688888888887
Q ss_pred HHH
Q 005178 387 RMR 389 (710)
Q Consensus 387 ~m~ 389 (710)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.23 Score=30.94 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+|..+..+|...|++++|+..|+++.+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 356677777777788888888888877777763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.6 Score=35.45 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=28.1
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005178 196 SLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 196 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (710)
+++..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445555555555555554431 124445555555555555555555555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.25 E-value=16 Score=40.45 Aligned_cols=18 Identities=0% Similarity=-0.060 Sum_probs=10.6
Q ss_pred HccCChHHHHHHHHHHHH
Q 005178 198 RFGRQFQLIEQLANEMVS 215 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~ 215 (710)
....+++.|...|..+.+
T Consensus 260 g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAE 277 (552)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 344566666666666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.14 E-value=9.2 Score=37.38 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
.....|++.+|..+|....+..- -+...--.|+.+|...|+.+.|..++..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555555555544321 122333344555555555555555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=2 Score=36.04 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCcCH---HHHHHHHHHHHhcC
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-GVAINV---MGCTCLIQCLGKAR 482 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~---~~~~~li~~~~~~g 482 (710)
++..|+++.|++.|.+....- +.....||.-..+|.-.|+.++|+.=+++..+. |-+ .. ..|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 445566666666666655443 455566666666666666666666666665552 211 11 12222233455556
Q ss_pred CHHHHHHHHHHHHHCC
Q 005178 483 RIDDLVRVFGVSIDRG 498 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~ 498 (710)
+-|.|..=|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.80 E-value=11 Score=37.58 Aligned_cols=129 Identities=19% Similarity=0.300 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCC--
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGK--AR----WAKDALELWERMRENKWP---MDFILYNTLLNMCADIGL-- 412 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~-- 412 (710)
++...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++...- ++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455566666666666665555442222222 11 244566677777664321 233344444332 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-CC--HHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 413 --VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-GN--VDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 413 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
.+.++.+|+.+.+.|..+-|..-+.+-+-++... .. +..+..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445556666665554333332222222222211 11 33555566666666666555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.67 E-value=19 Score=39.83 Aligned_cols=180 Identities=17% Similarity=0.134 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 005178 203 FQLIEQLANEMVSNEIELDNITYSTIIT----C-AKRCNLFDEAIEWFERMYK-------TGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 203 ~~~A~~l~~~m~~~g~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 270 (710)
...|.+.++.....| +...-..+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888887775 2222222222 2 4456788999999988876 33 333556666666664
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 005178 271 G-----KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE-SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG----KA 340 (710)
Q Consensus 271 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----~~ 340 (710)
. +.+.|+.+|....+.| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 5677888888887776 3444433333332222 24567888888888877732 22222222221 23
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005178 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWP 394 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 394 (710)
.+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 46777777887777776 2222222222333333 6666666666666655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.62 E-value=16 Score=38.62 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESG-LTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
..+..++-+.|+.++|++.|++|.+.. ...+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555666677777777777776432 111233455566777777777777777666543
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.45 E-value=21 Score=41.63 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVL 315 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 315 (710)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|+.+|..=.+ .-...|.+....+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666665554442 22344455555567777777776532111 11233444445555667777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 316 QEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEK--TLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 316 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+..-+. .--+.+|..+|+|.+|..+-.++... .+.. +-..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 665431 12456777788888888877776531 1222 2245666677777777777777666543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
..-.+..|++...+++|..+.....+
T Consensus 1029 ------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1029 ------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 22344456666677777776665553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.7 Score=38.80 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 005178 203 FQLIEQLANEMVSNEIELDNITYSTIITCAKR--C----NLFDEAIEWFERMYKTGL---MPDEVTYSAILDVYAKSGK- 272 (710)
Q Consensus 203 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~- 272 (710)
+++...+++.|.+.|+.-+..+|-+....... . ....+|.++|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888887777666553333322 1 234577788888877632 2334445555433 2222
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 273 ---VEEVLSLYERGVASGWKPDPI--AFSVLGKMFGESGD--YDGIRYVLQEMKSLGVQPNLVVYNTL 333 (710)
Q Consensus 273 ---~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 333 (710)
.+.++.+|+.+.+.|+..+.. ....++........ ...+..+++.+.+.|++.....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 345566666666666544322 22222222211111 33566666666666666665555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.38 E-value=4.8 Score=34.90 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYC-KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
-.....+.|++++|.+.|+.+...-.. +-....-..++.+|.+.|++++|...+++.++.....--.-|...+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344455778888888888888775321 2234566677888888888888888888888765544445565556665544
Q ss_pred CC
Q 005178 482 RR 483 (710)
Q Consensus 482 g~ 483 (710)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 33
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.35 Score=29.98 Aligned_cols=32 Identities=9% Similarity=-0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
.|..+..+|...|++++|++.|+++.+++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566777777788888888888777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.23 E-value=23 Score=39.80 Aligned_cols=429 Identities=12% Similarity=0.051 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHH-ccCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHHcCCH
Q 005178 167 WQKSYFFFNWIKSQNLFPME--TIFYNVTMKSLR-FGRQFQLIEQLANEMVSNEIELDNI-----TYSTIITCAKRCNLF 238 (710)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~ 238 (710)
...|+..++.+.+...++|. ..++--+...|. ...+++.|+..+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34566666666654444443 345555666664 7788888888888775432222221 122344566665555
Q ss_pred HHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 005178 239 DEAIEWFERMYKTG----LMPDEVTYSAI-LDVYAKSGKVEEVLSLYERGVASG---WKPDPIAFSVLGKMFG--ESGDY 308 (710)
Q Consensus 239 ~~A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~ 308 (710)
. |...+++.++.- ..+-...|..+ +..+...+++..|.+.++.+...- ..+-..++-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888887766541 11122233333 333333478888888888776432 1333444444444433 44556
Q ss_pred HHHHHHHHHHHHCC---------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH---CC-CC--------------
Q 005178 309 DGIRYVLQEMKSLG---------VQPNLVVYNTLLEAMG--KAGKPGLARSLFDEMVE---SG-LT-------------- 359 (710)
Q Consensus 309 ~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~---~g-~~-------------- 359 (710)
+++.+.++++.... ..|-..+|..+++.++ ..|+++.+...++++.+ .. -.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 66777776663321 1234556777766554 46676666666555532 10 00
Q ss_pred ------------CCHHHH---------HHHHHH--HHhcCCHHHHHHHHHH-------HH-hCCCCCC--------HHHH
Q 005178 360 ------------PDEKTL---------TALIKI--YGKARWAKDALELWER-------MR-ENKWPMD--------FILY 400 (710)
Q Consensus 360 ------------p~~~~~---------~~li~~--~~~~g~~~~A~~~~~~-------m~-~~~~~~~--------~~~~ 400 (710)
+....| .-++.+ ++..+..+.|.+++++ .. .....+. ...|
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 101111 111221 2333444355554444 33 1111111 1122
Q ss_pred HHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHH-------
Q 005178 401 NTLLNM---------CADIGLVEEAERLFEDMKLSDYCKPD-------NYSYTAMLNIYGSGGNVDNAIELFE------- 457 (710)
Q Consensus 401 ~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~------- 457 (710)
...+.. .+-.+++..|...+..+.....-.|+ ...+....-.+...|+.+.|...|.
T Consensus 356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~ 435 (608)
T PF10345_consen 356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC 435 (608)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence 222222 23468899999999988764311122 2223333333556799999999997
Q ss_pred -HHHHcCCCcCHHHHHHH--HHHHHhcCC--HHH--HHHHHHHHHHC-CCCC--CHHHHHHHH-HHHHhcC--ChHHHHH
Q 005178 458 -EMSELGVAINVMGCTCL--IQCLGKARR--IDD--LVRVFGVSIDR-GVKP--DDRLCGCLL-SVVSLCE--TSEDVGK 524 (710)
Q Consensus 458 -~m~~~~~~p~~~~~~~l--i~~~~~~g~--~~~--A~~~~~~m~~~-~~~p--~~~~~~~ll-~~~~~~g--~~~~a~~ 524 (710)
.....+...+...+..+ +..+...+. .++ +..+++.+... .-.| +..++.+++ .++.... ...++..
T Consensus 436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~ 515 (608)
T PF10345_consen 436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKR 515 (608)
T ss_pred hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHH
Confidence 44445555555544432 222222222 223 66777665421 2222 333455444 3333221 2235555
Q ss_pred HHHHHHH-----hCCc-HHH-HHHHHHhhcCCcccHHHHHHHHHHh---ccCCC--ChhhHHH-----HHHHHHhCCCHH
Q 005178 525 VITCLQQ-----ANPK-LVA-FLNLIEDNSTGFENIKEEFRNVIKD---TEVDA--RRPFCNC-----LIDICRNRNLNE 587 (710)
Q Consensus 525 ~~~~~~~-----~~p~-~~~-~~~~L~~~~~~~~~~~~~a~~~~~~---~~~~~--~~~~~~~-----l~~~~~~~g~~~ 587 (710)
.+....+ .+-. ... ++++++.... .++..+.+...... ....+ ....|.. +.+.+...|+.+
T Consensus 516 ~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ 594 (608)
T PF10345_consen 516 HLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRD 594 (608)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHH
Confidence 4444322 1111 122 3466665443 23233332222222 12223 3346733 344588899999
Q ss_pred HHHHHHHHHH
Q 005178 588 RAHELLYLGT 597 (710)
Q Consensus 588 ~A~~~~~~~~ 597 (710)
+|..+..+..
T Consensus 595 ka~~~~~~~~ 604 (608)
T PF10345_consen 595 KAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHH
Confidence 9998877643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.18 E-value=11 Score=35.77 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMV 214 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 214 (710)
..|.--..+|....++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555556666666666666655554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.15 E-value=11 Score=36.03 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDF---ILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
+...|.+.|.+..|..-++.|.+. .+-+. ..+-.+..+|...|..++|.+.-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445566666666666666666654 22122 233344555666666666655544443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.01 E-value=11 Score=35.64 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
.|.-...+|....++++|...+.+..+. .+-+...|.+ ...++.|.-+.+++.+. +--...|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455777788888888877666532 1112222211 22344555555555442 122334555666788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC---HHHHHHHHHHHHhcCC
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES---GLTPD---EKTLTALIKIYGKARW 377 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~---~~~~~~li~~~~~~g~ 377 (710)
.+|..+.|-..+++.-+. .+.-++++|+++|++.... + ..+ ...+..+-..+.+...
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~-dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEED-DRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhhHhhhhHH
Confidence 888887777776665431 2334455555555544321 1 001 1123333444555566
Q ss_pred HHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhCCCHH
Q 005178 378 AKDALELWERMREN----KWPMDF-ILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPDNYSYTAMLNIYGSGGNVD 450 (710)
Q Consensus 378 ~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 450 (710)
+++|-..|.+-... .--++. ..|-..|-.|....++..|+..++.-.+.+.+ .-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 66655544432210 000111 22334444455556777777777664332210 23445556666655 345555
Q ss_pred HHHHH
Q 005178 451 NAIEL 455 (710)
Q Consensus 451 ~A~~~ 455 (710)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 54444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.3 Score=40.96 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDY-CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..|..++...|++++|..+|..+.+... .+.-+.++--|..+..+.|+.++|..+|++..+
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444444444444444444443221 011123344444444444444444444444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.93 E-value=14 Score=36.68 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=95.2
Q ss_pred HccCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCC----
Q 005178 198 RFGRQFQLIEQLANEMVSNE--IELDN------ITYSTIITCAKRCN-LFDEAIEWFERMYKT--------GLMPD---- 256 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~---- 256 (710)
.+.|+++.|..++.+....- ..|+. ..|+.-...+ ..+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46778888888887776532 12222 2233333333 445 888888777766543 12233
Q ss_pred -HHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 257 -EVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT 332 (710)
Q Consensus 257 -~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 332 (710)
..++..++.+|...+.. ++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++.+|...- .-....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 24667788888887764 45666666665442 2235566666777777999999999999998852 112334555
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 333 LLEAMGK--AGKPGLARSLFDEMVESGLTPDE 362 (710)
Q Consensus 333 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~ 362 (710)
++..+.. ......|...++.++...+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5544422 22334566666666554444443
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.9 Score=42.25 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE-----LGVAINVMGCTC 473 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 473 (710)
++..++..+...|+++.+...++++.... +.+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45566667777777777777777777765 56777777777777777777777777777654 355555554444
Q ss_pred HHH
Q 005178 474 LIQ 476 (710)
Q Consensus 474 li~ 476 (710)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.88 E-value=5.5 Score=34.50 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVA--INVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+.|++++|.+.|+.+...-.. -....-..++.+|.+.|++++|+..+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555543111 1233444455555555666665555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.61 E-value=27 Score=39.22 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005178 192 VTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG 271 (710)
Q Consensus 192 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 271 (710)
...+.+.+.|++++|..-|-+-+.. +.|. .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.+
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc
Confidence 3344556788888888777665532 2222 3445555566666777777888887766 6666677888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 272 KVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFD 351 (710)
Q Consensus 272 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 351 (710)
+.++-.++.+... .|.- ..-....+..+.+.+-+++|..+-..... +......+ +-..+++++|++++.
T Consensus 446 d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 446 DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 8887776665544 2211 11234556666677777777666555432 23333333 335677888888887
Q ss_pred HHH
Q 005178 352 EMV 354 (710)
Q Consensus 352 ~m~ 354 (710)
.|.
T Consensus 515 slp 517 (933)
T KOG2114|consen 515 SLP 517 (933)
T ss_pred cCC
Confidence 663
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=14 Score=35.53 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+.+-|.+.|.+-.|..-+++|++. ..-+. ..+-.+..+|...|..++|.+.-+-+..-.|+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 456688888888888888888865 22122 244556677888888777776655444444544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.43 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.102 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.|+.|+.+|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999864
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.4 Score=41.52 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID-----RGVKPDDRLCG 507 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 507 (710)
..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..|+.+.. .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456677888899999999999999999886543 788999999999999999999999988764 58888766655
Q ss_pred HHHHH
Q 005178 508 CLLSV 512 (710)
Q Consensus 508 ~ll~~ 512 (710)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.16 E-value=6.7 Score=35.81 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=72.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAI----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLC 516 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 516 (710)
-+...|++++|..-|.++++.-... ..+.|..-..++.+.+.++.|+.-..+.++.+ |+.. ....-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 4677889999999888888742211 23456666778889999999999998888754 4322 222334578888
Q ss_pred CChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 517 ETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
..+++|+.-|+++.+.+|....+-..+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999999997665544333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.88 Score=30.38 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=9.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 005178 403 LLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
+...|...|++++|+++|+++.+
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.06 E-value=11 Score=33.50 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=37.1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS 270 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 270 (710)
.+.++.++++.+++.+.-. .|.......+-. .+...|++.+|+.+|+.+...+ |......+|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4556677777777666553 344333322222 4556677777777777765542 3344444555444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.85 E-value=24 Score=37.24 Aligned_cols=166 Identities=16% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
...+++..++.+-...-...+..+|.+.|- +...|..+++.|... ..++-..+++++.+-. -.|++.-..|..-|
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 344455555555555555566666655432 445556666666655 3355555666555544 23444444455544
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcC
Q 005178 444 GSGGNVDNAIELFEEMSELGVAI-----NVMGCTCLIQCLGKARRIDDLVRVFGVSI-DRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g 517 (710)
-+ ++...+..+|.++...=++. -...|..++..- ..+.|.-+.+..++. ..|..--.+.+..+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44 55566666666555431110 112344443211 234455555555554 3343333445555556666677
Q ss_pred ChHHHHHHHHHHHHhCCcHH
Q 005178 518 TSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~ 537 (710)
++.+|+++++.+.+.+-.+.
T Consensus 220 N~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred CHHHHHHHHHHHhhhcchhh
Confidence 77777777776666555444
|
|
| >PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.1 Score=35.12 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=42.8
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchhhHHHHHHHHhhhcCCCccc---------cCCC
Q 005178 616 DVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQGLATAFASHVNKLAAPFRQ---------SEGK 686 (710)
Q Consensus 616 ~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~~ 686 (710)
+++++....|..++..+++. ....+. ....|.||.|.|+-.-.++.++...|++ ...+.+ ...|
T Consensus 2 DLHG~~~~eA~~~l~~~l~~---~~~~~~---~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g~ 74 (83)
T PF01713_consen 2 DLHGLTVEEALRALEEFLDE---ARQRGI---RELRIITGKGNHSKGGVLKRAVRRWLEE-GYQYEEVLAYRDAEPEDGN 74 (83)
T ss_dssp E-TTS-HHHHHHHHHHHHHH---HHHTTH---SEEEEE--STCTCCTSHHHHHHHHHHHH-THCCTTEEEEEE--CCCTG
T ss_pred CCCCCcHHHHHHHHHHHHHH---HHHcCC---CEEEEEeccCCCCCCCcHHHHHHHHHHh-hhccchhheeeecCCCCCC
Confidence 45666665555555555543 333332 5688999999999875589999999987 544443 2346
Q ss_pred CceEEe
Q 005178 687 AGCFVA 692 (710)
Q Consensus 687 ~g~~~~ 692 (710)
.|+++.
T Consensus 75 ~G~~~V 80 (83)
T PF01713_consen 75 SGATIV 80 (83)
T ss_dssp GGEEEE
T ss_pred CeEEEE
Confidence 687764
|
It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.41 E-value=25 Score=39.46 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=119.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL----IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
...-++.+++...++.|+.+-+.- +. +..+...+ ...+.+.|++++|...|-+.+.. +.|. .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 345677888888888887765433 22 33333334 34456789999999988887754 3332 2556
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
-|....++.+-..+++.+.+.|. .+..--..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 66777788888889999999884 666677789999999999998888776554 2222 112345667778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+|..+-.+... ....... .+...+++++|.++++.+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88877765432 2233333 345678899999888765
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.16 E-value=16 Score=34.01 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=58.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
++.+++-+..|+.=|....... |.-+.+||.+.-.+...|+++.|.+.|+...+....-+-...|--|. +--.|++.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchH
Confidence 3555565677776666665543 33356788888888999999999999999888643222223333333 22358888
Q ss_pred HHHHHHHHHHHcC
Q 005178 240 EAIEWFERMYKTG 252 (710)
Q Consensus 240 ~A~~~~~~m~~~g 252 (710)
-|.+-|-+.-+..
T Consensus 151 LAq~d~~~fYQ~D 163 (297)
T COG4785 151 LAQDDLLAFYQDD 163 (297)
T ss_pred hhHHHHHHHHhcC
Confidence 8887777666653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.72 E-value=38 Score=37.79 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL 237 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 237 (710)
.++...|..|...|++++|-.+.-.|... +..-|...+.-+...++
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34555555555555555555555555543 44444444444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=25 Score=34.98 Aligned_cols=218 Identities=11% Similarity=0.051 Sum_probs=95.5
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF----DEAIEWFERMYKTGLMPDEVTY 260 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 260 (710)
+|..+....+..+...|.. ++...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 4444555555555555542 222333333332 2444444445555555542 3455555554332 3444444
Q ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 261 SAILDVYAKSGKV-----EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 261 ~~li~~~~~~g~~-----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
...+.++...+.- ..+...+..... .++..+-...+.++++.++ +++...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444444443311 122222222222 2344444455555555554 3444444444442 34444444444
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 336 AMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 336 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
++++.+ ....+...+..+.. .++..+-...+.++++.++ ..|+..+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 444432 12344444444442 3344445555555555555 23444444443331 1 123445555555553
Q ss_pred HHHHHHHHHHh
Q 005178 415 EAERLFEDMKL 425 (710)
Q Consensus 415 ~A~~~~~~~~~ 425 (710)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 45555555543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=16 Score=32.71 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=59.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHH--HHHHHHhcCCHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPD-EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPI-AFSV--LGKMFGESGDYD 309 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~--li~~~~~~g~~~ 309 (710)
+.+..++|+.-|..+.+.|..-- +.....+.......|+...|...|+++-...-.|-.. -..- -.-.+...|.|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34555555555555555543211 1111222333445566666666666554432222211 0011 112344566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 005178 310 GIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVES 356 (710)
Q Consensus 310 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 356 (710)
+....++-+-..+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666665554443333344455555566666666666666666543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.98 E-value=43 Score=37.40 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 197 LRFGRQFQLIEQLANEMVSNEIEL---DNITYSTIITCAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 197 ~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (710)
+.+.+.+++|+++.+..... .+ -...+...|..+.-.|++++|-...-.|..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 34445555555554443322 22 123445555555556666666555555543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.76 E-value=7.9 Score=36.49 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCccc----
Q 005178 478 LGKARRIDDLVRVFGVSIDRGVKPDDRL-CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFEN---- 552 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~---- 552 (710)
|....+++.|+..|.+.+. +.|+..+ |..=+.++.+..+++.+..--+.+.++.|+..-....||.+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 4445556666665555444 4455432 33444555556666666666666666666665544444443322211
Q ss_pred --HHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 553 --IKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 553 --~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
.+.+|..+.+..++.+...++..|.++=.+.=...++.++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 2344555555556666666888888775554455566665544
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.9 Score=28.09 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 505 LCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 505 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+|..+...|...|++++|.+.|++..+++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666777777777777777777766663
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.72 E-value=4.5 Score=37.01 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
.+..+..-|.+.|+.++|++.|.++.+....+... .+-.++..+...+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45555556666666666666666665554444333 34455555566666666655555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.62 E-value=1 Score=28.49 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
|..|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444445555555544444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.58 E-value=6.1 Score=36.13 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNL--VVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
+..+...|.+.|+++.|.+.|.++.+....+.. ..+-.+|......+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555555555555554443222111 12334444444455555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.6 Score=43.53 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=72.8
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 005178 374 KARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 374 ~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (710)
..|++-.|- +++.-+......|+.+...+.| +...|+++.+...+......- .....+...++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHH
Confidence 456665554 4444555444445555444444 456788888877776655432 34556677777777778888888
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..+-+.|....++ +......-...-...|-+|++.-.|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8777777765554 4444443333445567777777777777653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.07 E-value=19 Score=32.30 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 314 VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 314 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
.+..+.+.|++|+...+..+++.+.+.|++..- ..++..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--
Confidence 344444555666666666666666666655433 333344444443333322222211 112222222222221
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 394 PMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
=...+..+++.+...|++-+|.++....
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012444555666666666666666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.97 E-value=43 Score=36.21 Aligned_cols=115 Identities=12% Similarity=0.088 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHH
Q 005178 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFE 246 (710)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~ 246 (710)
+.+..+++.+... +|.-.--|......=.+.|..+.+.++|++-+.. ++.+...|...+. +....|+.+...+.|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3444555555443 2323334566666667788888888888887763 5556667766666 3445677777777888
Q ss_pred HHHHc-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 247 RMYKT-GLM-PDEVTYSAILDVYAKSGKVEEVLSLYERGVA 285 (710)
Q Consensus 247 ~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 285 (710)
..+.. |.. .....|...|..-..++++.....+|++.++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 77765 432 2455677777777777888888888888876
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.88 E-value=19 Score=31.96 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.++.+++..++..+.- +.|... ++.. ..+...|+|.+|..+|+.+.+..|...-.-.+++.|
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44555555555555543 223222 2222 223455556666666665555555544444444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.64 E-value=13 Score=34.39 Aligned_cols=78 Identities=9% Similarity=-0.076 Sum_probs=57.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKT---GLMPDEVTYSAILDVYAKSGKVE 274 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~ 274 (710)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|...+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 678888888887765545555555555554 67889999998888764 33678899999999999999988
Q ss_pred HHH
Q 005178 275 EVL 277 (710)
Q Consensus 275 ~A~ 277 (710)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.62 E-value=21 Score=32.12 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=13.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 247 RMYKTGLMPDEVTYSAILDVYAKSGKVE 274 (710)
Q Consensus 247 ~m~~~g~~~~~~~~~~li~~~~~~g~~~ 274 (710)
.+.+.++.++...+..+++.+.+.|++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3334445555555555555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.59 E-value=14 Score=32.16 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHH
Q 005178 481 ARRIDDLVRVFGVSIDRGVKPDD---RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEF 557 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a 557 (710)
.++.+++..+++.|.- +.|+. .++... .+...|+|++|.++|+.+.+-.+...-...+++.|+.-.+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~------ 92 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG------ 92 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC------
Confidence 6666666666666654 23322 233332 2456677777777777666655554433344444433222
Q ss_pred HHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 558 RNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
.+.|..........|...+|+.+.+...
T Consensus 93 ------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 2246666666566666666666666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.20 E-value=22 Score=31.89 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=89.5
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITY-STIITCAKRCNLFDEAIEWFERMYKTGLMPDEV-TYSAI 263 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l 263 (710)
....|..-++ +...+..++|+.-|..+.+.|..--.+.- --+.......|+...|+..|+++-.....|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444555444 35667778888888888887654222211 112235567888888888888887764444333 11111
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 264 --LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP 325 (710)
Q Consensus 264 --i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (710)
.-.+...|.++......+-+-..|-+.-...-..|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22345678888888888877766544455566777777888899999999998887643333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.10 E-value=0.61 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=18.2
Q ss_pred ccCCCChh-hHHHHHHHHHhCCCHHHHH
Q 005178 564 TEVDARRP-FCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 564 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 590 (710)
+..+|+.+ .|+.|+.+|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 33445433 6777777788888888775
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.91 E-value=15 Score=32.03 Aligned_cols=51 Identities=6% Similarity=-0.056 Sum_probs=29.2
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHc
Q 005178 199 FGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEAIEWFERMYKT 251 (710)
Q Consensus 199 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~ 251 (710)
..+++++++.+++.|.-. .|+..-...+-. .+...|++++|+.+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 366777777777776553 333322222211 345667777777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.8 Score=26.71 Aligned_cols=27 Identities=4% Similarity=0.053 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 470 GCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 470 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.99 E-value=12 Score=36.77 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 005178 217 EIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTG---LMP--DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD 291 (710)
Q Consensus 217 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 291 (710)
|......+...++.......+++.++..+-++.... ..+ ...+|..+ +. .-+.++++.++..-+..|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---ll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---LL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---HH-ccChHHHHHHHhCcchhccccc
Confidence 334444455555555455566666666665554321 111 12222222 22 2355566666666666777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKS 320 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 320 (710)
..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777776666665554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.76 E-value=1 Score=28.07 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A 452 (710)
|.+...|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 34444555555555555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=54 Score=34.81 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
|....-+++..+..+..+.-.+.+-.+|+..| -+-..|..++.+|... .-++-..+++++.+..+ |.+...--+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 55556666677766666666677777776654 5566666777777666 44566666776666533 3333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTP--D---EKTLTALIKIYGKARWAKDALELWERMREN-KWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~ 409 (710)
.+...++...+..+|.++...=++. + ...|.-+...- ..+.+..+.+...+.+. |...-.+.+.-+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333466666666776665432110 0 12333333211 23445555555544432 233333444444455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 442 (710)
..++++|++++..+.+.+ ..|..+--.++..
T Consensus 218 ~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD--EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc--chhhhHHHHHHHH
Confidence 666666666666666655 3555555555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.49 E-value=9.1 Score=41.03 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|+++.|..++..+. ....+.++.-+-+.|..++|+++- +|...- .....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHH
Confidence 455555555443332 123344555555666666555432 222111 1223456777777766
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.|...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 55543 456677777777777777777777766553 34456666666666655555555554443
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
. |.-..+|...|+++++++++.+
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHh
Confidence 2 2223345667777777666643
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.25 E-value=3.8 Score=40.45 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=40.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 521 (710)
|.+.|.+++|+..|...+.. .| |.+++..-..+|.+..++..|..-....+..+-. -...|..-+.+-...|+..+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHH
Confidence 45555555555555554442 22 4445544455555555554444443333321100 00122222222223444555
Q ss_pred HHHHHHHHHHhCCcHHHH
Q 005178 522 VGKVITCLQQANPKLVAF 539 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~ 539 (710)
|.+-++.+..+.|+....
T Consensus 184 AKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 184 AKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHhHHHHHhhCcccHHH
Confidence 555555555555654433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.08 E-value=5.4 Score=35.92 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc----------cHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhCCCHHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFE----------NIKEEFRNVIKD-TEVDARRPFCNCLIDICRNRNLNER 588 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~----------~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 588 (710)
++|+.-|+++..++|+...++-.||.++...+ ...+.|.+++++ ...+|+..+|+.-+..+. +
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------T
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------h
Confidence 45555566666777777666655554443221 234555555554 467888888887777664 2
Q ss_pred HHHHHHHHHHcC
Q 005178 589 AHELLYLGTLYG 600 (710)
Q Consensus 589 A~~~~~~~~~~~ 600 (710)
|-++..+..+.+
T Consensus 126 ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHH
Confidence 444544444333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.99 E-value=72 Score=35.87 Aligned_cols=348 Identities=15% Similarity=0.148 Sum_probs=143.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH---HHH
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK-------VEEVLSLYERGVASGWKPDPI---AFS 296 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~---~~~ 296 (710)
.+|-.|.|+|++++|.++....... .......+...+..|....+ -+....-|++........|+. +|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHH
Confidence 5666788999999999988555433 34455667778888877532 345556666666543222433 233
Q ss_pred HHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCC--
Q 005178 297 VLGKMFGESGDYDGIR-YVLQEMKSLGVQPNLV--VYNTLLEAMGKAGK-----------PGLARSLFDEMVESGLTP-- 360 (710)
Q Consensus 297 ~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p-- 360 (710)
.+ +++.-...-. .+ ..+.. .|--|. +.+... +++-.+.+.+.-+.-+.+
T Consensus 195 il----g~cD~~~~~~~~V---------~~tiED~LW~~L~--~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~ 259 (613)
T PF04097_consen 195 IL----GRCDLSRRHLPEV---------ARTIEDWLWLQLS--LVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGS 259 (613)
T ss_dssp HH----HT--CCC-S-TTC-----------SHHHHHHHHHH--H---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HH----hcCCccccchHHH---------hCcHHHHHHHHHH--hhccCCCccccccccccHHHHHHHHHHhchhhcccch
Confidence 22 1111100000 00 01111 111111 111110 111111111221222222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
+... ....+.-.|.++.|++.+-+. .+...|.+.+...+. ..|-+......-..+.......+...-+..||
T Consensus 260 ~p~~---Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI 331 (613)
T PF04097_consen 260 NPLL---YFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLI 331 (613)
T ss_dssp -------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHH---HTT------------------------HHHHH
T ss_pred hHHH---HHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHH
Confidence 2222 334455678999999888771 122334444444333 33333322222122222211012225677888
Q ss_pred HHHHh---CCCHHHHHHHHHHHHHcCCCcCHHHHHH-HHHHHHhcCCHHHHH-----------HHHHH---HHHCCCCC-
Q 005178 441 NIYGS---GGNVDNAIELFEEMSELGVAINVMGCTC-LIQCLGKARRIDDLV-----------RVFGV---SIDRGVKP- 501 (710)
Q Consensus 441 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~-----------~~~~~---m~~~~~~p- 501 (710)
..|.+ ..+..+|.++|--+....-+.....+.. +-......++++.-+ .++++ ++ ++..
T Consensus 332 ~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~ 409 (613)
T PF04097_consen 332 GQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDD 409 (613)
T ss_dssp HHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSS
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCc
Confidence 88876 4677788888877665322111222222 222222233222111 11111 11 1221
Q ss_pred CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC----------CcccHHHHHHHHHHhccCCC
Q 005178 502 DDR---LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST----------GFENIKEEFRNVIKDTEVDA 568 (710)
Q Consensus 502 ~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~----------~~~~~~~~a~~~~~~~~~~~ 568 (710)
+.. +......-+...|++++|+.+|.-+.+.+.-...+...|+.... ...+....|..+.+.....+
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~ 489 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNP 489 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCc
Confidence 111 23334445667899999999887765332222222233322111 12345666666666543322
Q ss_pred C---------hhhHHHHHHH-----HHhCCCHHHHHHHHHHHHHcCCCC
Q 005178 569 R---------RPFCNCLIDI-----CRNRNLNERAHELLYLGTLYGLYP 603 (710)
Q Consensus 569 ~---------~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~ 603 (710)
. ..++..|++. +...|++++|.+.+++ .++.|
T Consensus 490 ~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~---L~liP 535 (613)
T PF04097_consen 490 HISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK---LDLIP 535 (613)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---TT-S-
T ss_pred chHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh---CCCCC
Confidence 1 1255555543 4688999999888875 55666
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.32 E-value=44 Score=32.84 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 202 QFQLIEQLANEMVS-NEIELDNITYSTIITCAKR-CN-LFDEAIEWFERMYKT-GLMPDEVTYSAILDVYAKSGKVEEVL 277 (710)
Q Consensus 202 ~~~~A~~l~~~m~~-~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (710)
.+.+|+.+|+..-. ..+--|......+++.... .+ ....--++.+-+... |-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555552111 1123355555555554443 11 222222333333322 34567777777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 005178 278 SLYERGVAS-GWKPDPIAFSVLGKMFGESGDYDGIRYVLQE-----MKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 278 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~ 335 (710)
++++..... +..-|...|..+|+...+.|+..-..++.++ +.+.|+..+...-..|-.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 777776654 4456777777777777777777766666654 233445555444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.39 E-value=41 Score=31.81 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHHhCCcH
Q 005178 517 ETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~ 536 (710)
.+.-.+...+++..+++|..
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 45555666666666667754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.15 E-value=49 Score=32.44 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
++.....|..+|.+.+|.++.++....+ +.+...+..++..++..|+--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445566677777777777777766652 3355666677777777777666665555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.09 E-value=2.7 Score=25.80 Aligned_cols=28 Identities=14% Similarity=-0.140 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|..++.+|...|++++|++.|++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.13 E-value=2.9 Score=27.10 Aligned_cols=26 Identities=31% Similarity=0.192 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+++.|+.+|...|++++|.++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 67899999999999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.35 E-value=23 Score=38.10 Aligned_cols=163 Identities=13% Similarity=0.165 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHH-----HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005178 186 ETIFYNVTMKSL-----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTY 260 (710)
Q Consensus 186 ~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 260 (710)
++..|..++..+ .-.|+++.|..++..+.+ ..-+.++..+.+.|..++|+++- +|..-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh-
Confidence 455555554433 456788888776655442 23445566677777777776542 22211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKA 340 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 340 (710)
-.....+.|+++.|.++..+. -+..-|..|.++....|++..|.+.|..... |..|+-.+...
T Consensus 643 --rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~ 705 (794)
T KOG0276|consen 643 --RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSS 705 (794)
T ss_pred --hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhc
Confidence 123345678888887776554 3567788888888888888888888877654 33466666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 341 GKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (710)
|+.+....+-....+.| .-|. .| -+|...|+++++.+++..-
T Consensus 706 g~~~~l~~la~~~~~~g-~~N~-AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 706 GNAEGLAVLASLAKKQG-KNNL-AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred CChhHHHHHHHHHHhhc-ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence 77776666666666665 2232 22 2455678888888877655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.31 E-value=47 Score=31.03 Aligned_cols=28 Identities=14% Similarity=-0.076 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 572 FCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|--|+.-+...|+.++|..+|+.++..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 5556778888999999999999987754
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.15 E-value=57 Score=31.82 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHh---CCCCCCCHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERM----RENKWPMDFILYNTL-LNMCADIGLVEEAERLFEDMKL---SDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~ 438 (710)
-++..+.+.|.+.+|+.+.+.+ .+..-+++..+...+ -.+|-...++.++..-+...+. .-.|||-...---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4677788888888888765543 333334443322211 2344444555554444433332 2235555555555
Q ss_pred HHHHH--HhCCCHHHHHHHHHHHHH
Q 005178 439 MLNIY--GSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 439 li~~~--~~~g~~~~A~~~~~~m~~ 461 (710)
|+.+. |...++..|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 55543 334556667777766654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.00 E-value=17 Score=35.74 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+.++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.44 E-value=14 Score=29.42 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
+..++.+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666667777777777777777777777777766653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.0 bits (216), Expect = 5e-18
Identities = 33/272 (12%), Positives = 82/272 (30%), Gaps = 46/272 (16%)
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGES 305
+ + L + A + ++ A +L
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPL------------------AHHLLVVHH--- 154
Query: 306 GDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL 365
+ L +YN ++ + G + + ++GLTPD +
Sbjct: 155 -----------GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 366 TALIKIYGKA-RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMK 424
A ++ G+ + A E+M + + + LL+ +++ ++
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
Query: 425 LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484
L P + + ++Y A + +L + + + C Q +
Sbjct: 264 LPPQLPPPVNTSKLLRDVY--------AKDGRVSYPKLHLPLKTLQCLFEKQ-----LHM 310
Query: 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516
+ RV VS+++ P + ++ +L
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLR 342
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 2e-12
Identities = 40/291 (13%), Positives = 71/291 (24%), Gaps = 16/291 (5%)
Query: 79 TKNDRTPLLSKPKSTWVNPTKPRRSVLSLQRQKRSTYSYNPRVR--DLKLFARKLND--- 133
+ P W + + R +R + + K R+L
Sbjct: 11 VQMGAKDATPVPCGRWAKILEKDKRTQQ-MRMQRLKAKLQMPFQSGEFKALTRRLQVEPR 69
Query: 134 --CDNTEEAFLRAITEIPHQPTREN--ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIF 189
+ P P E LL K + SQ +
Sbjct: 70 LLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQR 129
Query: 190 YNVTMKSL----RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWF 245
K + L+ L Y+ ++ R F E +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHG-QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 246 ERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLY-ERGVASGWKPDPIAFSVLGKMFGE 304
+ GL PD ++Y+A L + + + E+ G K + +VL
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355
+ + V P V + LL + L +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.3 bits (197), Expect = 1e-15
Identities = 83/622 (13%), Positives = 168/622 (27%), Gaps = 224/622 (36%)
Query: 115 YSYNPRVRD-LKLFARKLNDCDNTEEAFLRAI---TEIPH---QPTRENALLILNSLKFW 167
Y Y + F DC + ++ ++I EI H + L L FW
Sbjct: 16 YQYKDILSVFEDAFVDNF-DCKDVQD-MPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69
Query: 168 QKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYST 227
+ S+ E + + LR +F L+ + E + + Y
Sbjct: 70 T--------LLSKQ----EEMVQKFVEEVLRINYKF-LMSPIKTE--QRQPSMMTRMY-- 112
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
IE +R+Y V+AK V
Sbjct: 113 --------------IEQRDRLYNDN------------QVFAK------------YNV--- 131
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
+ P Y +R L E++ N+++ + +GK +A
Sbjct: 132 SRLQP---------------YLKLRQALLELRP---AKNVLID-----GVLGSGKTWVAL 168
Query: 348 S-LFDEMVESGLTPDEKTLTALIKIY----GKARWAKDALE----LWERMRENKWPMDFI 398
V+ + KI+ + LE L ++ N
Sbjct: 169 DVCLSYKVQCKM-DF--------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML---NIYGSGGNVDNAIEL 455
N L + L +K Y +L N+ + A
Sbjct: 220 SSNIKLR------IHSIQAELRRLLKSKPYEN-------CLLVLLNVQNA-----KAWNA 261
Query: 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLV------RVFGVSIDRGVKPDDRLCGCL 509
F + C L+ + +++ D + + + PD+ +
Sbjct: 262 FN-----------LSCKILL--TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----V 303
Query: 510 LSVVSLCETSEDVGKVITCL-QQA---NPKLVAFL-NLIEDNSTGFENIK----EEFRNV 560
S++ + L ++ NP+ ++ + I D ++N K ++ +
Sbjct: 304 KSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 561 IKD-----TEVDARRPFCNCLI-----DI-----------------------CRNRNL-N 586
I+ + R+ F + I +L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 587 ERAHELLYLGTLYGLY----------PGLHNKTLDEWSLDVRSLSVGAAQTALEE-WMWT 635
++ E ++ +Y LH +D +++ S L++ +
Sbjct: 419 KQPKESTI--SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 636 LA----KIVLREEV--LPQLFL 651
+ I E + +FL
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFL 498
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 80/640 (12%), Positives = 165/640 (25%), Gaps = 231/640 (36%)
Query: 64 LSEQLKP-LSSTTL-----SPTKNDRT-----PLLSKPKSTWVNPTKPRRSVLSLQRQ-- 110
+ + K LS + S T LLSK + ++ V + R
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV------QKFVEEVLRINY 91
Query: 111 ----KRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRE-------NALL 159
+++ + + N + F + +R ALL
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQPYLKLRQALL 145
Query: 160 ILNSLKFWQKSYFFFNWI---------KS------------QNLFPMETIFYNVTMKSLR 198
L K + K+ Q + IF+ L
Sbjct: 146 ELRPAK----------NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFW------LN 188
Query: 199 FGRQF---QLIEQLAN---EMVSNEIELDNITYSTIITCAKRCNLFDEAIE--WFERMYK 250
++E L ++ N + + + + R + + + Y+
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPYE 244
Query: 251 TGLMP-DEVTYSAILDVYAKSGKV--------------------------------EEVL 277
L+ V + + + S K+ +EV
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 278 SLYERGVASGWKPD----------PIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPN 326
SL + + +P P S++ + + +D ++V + + ++
Sbjct: 305 SLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 327 LVVYNTLLEAMGKAGKPGLARSLFDEMV---ESGLTPDEKTLTALIKIYGKARWAKDALE 383
N L +P R +FD + S P L+ + W
Sbjct: 361 -SSLNVL--------EPAEYRKMFDRLSVFPPSAHIP-TILLSLI--------WFDVIKS 402
Query: 384 LWERMRE--------NKWPMDFI--LYNTLLNMCADIG--------LVEEAERLFEDMKL 425
+ K P + + + L + + +V+ + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDS 461
Query: 426 SDYCKP--DNYSYTA----MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479
D P D Y Y+ + NI E + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNI--------EHPERMTLFRMVFL--------------- 498
Query: 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539
D R F +++ ++ D S+++ LQQ L +
Sbjct: 499 ------DF-R-F---LEQKIRHDSTAWNASGSILNT-------------LQQ----LKFY 530
Query: 540 LNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDI 579
I DN +E + + + E + L+ I
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.1 bits (137), Expect = 6e-09
Identities = 35/265 (13%), Positives = 83/265 (31%), Gaps = 18/265 (6%)
Query: 202 QFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYS 261
+Q A + + E D + + ++ K P+
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD----EIKPSSAPELQAVR 69
Query: 262 AILDVYAKSGKVEEVLSLYERGVASGWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKS 320
+ A + + +++ +R ++ + + ++ + D L + S
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 321 LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDE---KTLTALIKIYGKARW 377
L V + + K + LAR +M + D + TA + +
Sbjct: 130 LECMAMTV------QILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEK 181
Query: 378 AKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437
+DA +++ M + K +L N G E AE + ++ D P+
Sbjct: 182 LQDAYYIFQEMAD-KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 438 AMLNIYGSGGNVDNAIELFEEMSEL 462
+L+ + G + ++ +
Sbjct: 241 VVLSQH-LGKPPEVTNRYLSQLKDA 264
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 6e-09
Identities = 31/240 (12%), Positives = 86/240 (35%), Gaps = 17/240 (7%)
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
++ +++ EA ++ E+ K + D+ +E ++YER +++
Sbjct: 43 LLVLGHHPDIWYEAAQYLEQSSKL--------LAEKGDMNNAKLFSDEAANIYERAISTL 94
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
K + + + Y+ + + + ++ +VY ++ +A R
Sbjct: 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
+F + E T +TA + Y ++ A +++E + K+ ++
Sbjct: 155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-KYGDIPEYVLAYIDYL 213
Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNY-----SYTAMLNIYGSGGNVDNAIELFEEMSEL 462
+ + LFE + S P+ + A + G++ + +++ +
Sbjct: 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI---GDLASILKVEKRRFTA 270
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 40/209 (19%)
Query: 266 VYAKSGKVEEVLSLYERGVA----SGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL 321
V G +E L + + + +A SVLG++ G+ ++Q+ + +
Sbjct: 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 82
Query: 322 GVQPN-----LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR 376
Q + L E + G A ++
Sbjct: 83 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK------------------------ 118
Query: 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFED-MKLSDYCKPDN-- 433
A +L + PM L + ++EAE +++ +P
Sbjct: 119 ----AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174
Query: 434 YSYTAMLNIYGSGGNVDNAIELFEEMSEL 462
++ + G++DNA + L
Sbjct: 175 QCLAMLIQCSLARGDLDNARSQLNRLENL 203
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 45/488 (9%), Positives = 133/488 (27%), Gaps = 59/488 (12%)
Query: 40 ISCNSKSSENVAAESPNPETKTLSLSEQLKPLSSTTLSPTKNDRTPLLSKPKSTWVNPTK 99
+ +++ +P + + + + N+ LS + +
Sbjct: 1 MVVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLA 60
Query: 100 PRRSVLSLQRQKRSTYSYNP-----RVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTR 154
S ++R+ + + +R + A + + +
Sbjct: 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN---- 116
Query: 155 ENALLILNSLKFWQKSYFF-FNWIKSQNLFPMETIFYNVTMKSLR-------------FG 200
N L + Y + ++L+ + + L
Sbjct: 117 PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET 176
Query: 201 RQFQLIEQLANEMVSNE--IELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD-E 257
F+ E+ AN+++ + I+L+ + FD A E ++ +
Sbjct: 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCY 234
Query: 258 VTYSAILDVYAKSGKVE-EVLSLYERGVASGWKPDPIA--FSVLGKMFGESGDYDGIRYV 314
+ ++ + + E +++ S + + + +
Sbjct: 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294
Query: 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374
L + L + + + + + + ++ +++E D L ++
Sbjct: 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVYP-LHLA 347
Query: 375 ARWAK----DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK 430
+ + + + P + + + + + EA R F K S
Sbjct: 348 SLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS--KSSTM-D 403
Query: 431 PDN-YSYTAMLNIYGSGGNVDNAIELFEEMSEL----GVAINVMGCTCL--------IQC 477
P ++ + + G D AI + + L + +G + +
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463
Query: 478 LGKARRID 485
L + +
Sbjct: 464 LQSSYALF 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 43/379 (11%), Positives = 105/379 (27%), Gaps = 63/379 (16%)
Query: 129 RKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQK-----SYFFFNWIKSQNLF 183
L++ D +E + A+ + L+ + L ++ + + K F
Sbjct: 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270
Query: 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243
Y + + + + E + + E + ++ T R F + +
Sbjct: 271 LRS--LYMLKLNKTSHEDELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRSR-FIDVLA 326
Query: 244 WFERMYKTGLMPDEV-TYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKM 301
++ + + P + Y L +SG+ ++ + V P+ + + +G
Sbjct: 327 ITTKILE--IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIY 382
Query: 302 FGESGDYD-----------------------GIRYVLQEM---------KSLGVQPNLV- 328
+ + ++ + +
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442
Query: 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTL-----TALIKI--YGKARWA-KD 380
Y L + G LA L + L A ++
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500
Query: 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYS-YTAM 439
AL L ++ + N+ + L + + + + A L ++ + +TA+
Sbjct: 501 ALLLVKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLL---LSTNDANVHTAI 556
Query: 440 LNIYGSGGNVDNAIELFEE 458
+Y AI E
Sbjct: 557 ALVYLHKKIPGLAITHLHE 575
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 26/254 (10%), Positives = 76/254 (29%), Gaps = 34/254 (13%)
Query: 238 FDEAIEWFER---MYKTGLMPDEV----TYSAILDVYAKSGKVEEVLSLYERGVASGWKP 290
+ EAI ++ + D++ + + + Y + + + +
Sbjct: 117 YVEAIGYYREAEKELPF--VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 291 DP----IAFS--VLGKMFGESGDYD-GIRY---VLQEMKSLGVQPNL-VVYNTLLEAMGK 339
S V+ + + YD + + L+ + + + + + +
Sbjct: 175 PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234
Query: 340 AGKPGLARSLFDE---MVESGLTPDE-KTLTALIKIYGK-------ARWAKDALELWERM 388
+G +A F + + + K L L K ++ ++ L+
Sbjct: 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294
Query: 389 RENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448
+ F+ + D + + FE L Y + + ++ S +
Sbjct: 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE---ACARSAAAVFESSCH 351
Query: 449 VDNAIELFEEMSEL 462
+ A + ++ +
Sbjct: 352 FEQAAAFYRKVLKA 365
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 31/312 (9%), Positives = 88/312 (28%), Gaps = 44/312 (14%)
Query: 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT---------CAKRCNLFDE 240
+N+ ++ L + ++ EQ + EI+ + ++ +
Sbjct: 62 HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLS 121
Query: 241 AIEWFER---MYKTGLMPDEV----TYSAILDVYAKSGKVEEVLSLYERGVA-----SGW 288
AI++F++ + D + + + + Y + + + +
Sbjct: 122 AIKFFKKAESKLIF--VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179
Query: 289 KPDPI-AFSVLGKMFGESGDYD-GIRY---VLQEMKSLGVQPNL-VVYNTLLEAMGKAGK 342
+ S+ F + Y+ I + ++ + + +
Sbjct: 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239
Query: 343 PGLARSLFDE----MVESGLTPDE-KTLTALIKIYGK-------ARWAKDALELWERMRE 390
A F ES + P + + +I+ K + + ++ +
Sbjct: 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299
Query: 391 NKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVD 450
+ +F +L D ++ E L + + Y N
Sbjct: 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE---DFAIDVAKYYHERKNFQ 356
Query: 451 NAIELFEEMSEL 462
A F ++ ++
Sbjct: 357 KASAYFLKVEQV 368
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 5e-04
Identities = 47/377 (12%), Positives = 106/377 (28%), Gaps = 62/377 (16%)
Query: 127 FARKLNDC-DNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFN--WIKSQNLF 183
+ RK++ E + + + + +S +++ + +
Sbjct: 56 YVRKVSQKKFKLYEVYEFTLGQFENYW---------DSYGLYKEYIEEEGKIEDEQTRIE 106
Query: 184 PMETIF----YNVTMKSLRFGRQFQLIEQLANEMVSNEI----------------ELDNI 223
+ + + F+ E N++ +I ++ +
Sbjct: 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166
Query: 224 T-------YSTIITCAKRCNLFDEAIEWFERM---YKTGLMPDEVTYSAILDVYAK---- 269
+ +I + RM + L Y++
Sbjct: 167 IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFF-YSEYLIG 225
Query: 270 SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329
G+ E+ + ERG+ G + E Y ++ ++ +
Sbjct: 226 IGQKEKAKKVVERGIE--MSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283
Query: 330 YNTL-----LEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384
L L + K L R LF E+ G+ P A I+ Y +
Sbjct: 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIE-YYATGSRATPYNI 342
Query: 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444
+ K P +L IG E A LF+ ++ + + +M+
Sbjct: 343 FSSGLL-KHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTS------RMWDSMIEYEF 395
Query: 445 SGGNVDNAIELFEEMSE 461
G+++ EL ++ +
Sbjct: 396 MVGSMELFRELVDQKMD 412
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 63/389 (16%), Positives = 115/389 (29%), Gaps = 43/389 (11%)
Query: 103 SVLSLQRQKRSTYSYNPRVRDLKLFARKLNDCDNTEEAFLRAITEIPHQPTRENALLILN 162
SVLSL R+L A K+ + +N + R +P + + I +
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLN-ENLSKDEGRGSQVLPSNTSLASFFGIFD 175
Query: 163 ---SLKFWQKSYFFFNWI----KSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVS 215
+ S + + T + L L+ V
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235
Query: 216 NEIELDN-ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE 274
+ + + + N +A + L P +Y + A +
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQ 293
Query: 275 EVLSLYERGVASGWKPD-PIAFSVLGKMFGESGDYDG-IRYVLQEMKSLGVQPNLVV-YN 331
E +++ A P+ P + G+M+ DY K+ + P V Y
Sbjct: 294 EFFKFFQK--AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ---KAQSLNPENVYPYI 348
Query: 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDE--------KTLTAL------IKIYGKA-R 376
L + K GK + + F+E P + LT IK Y A R
Sbjct: 349 QLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406
Query: 377 WAKDALELWERM-RENKWPMDFILYNTLLNMCADIGLVEEAERLFED-MKLSDYCKPDNY 434
+ ++ + ++ D A +L +L P +
Sbjct: 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL----DPRSE 462
Query: 435 -SYTAMLNIYGSGGNVDNAIELFEEMSEL 462
+ + + +D AIELFE+ + L
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.74 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.74 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.53 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.4 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.37 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.15 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.04 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.89 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.85 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.82 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.69 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.52 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.48 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.48 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.29 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.69 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.47 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.49 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.48 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.23 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.97 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.93 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.83 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.63 | |
| 3fau_A | 82 | NEDD4-binding protein 2; SMR, small-MUTS related d | 92.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.83 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.32 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 88.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 86.81 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.12 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.6 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.58 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 85.48 | |
| 2vkc_A | 135 | NEDD4-binding protein 2; human BCL3 binding protei | 84.37 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.74 | |
| 2d9i_A | 96 | NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 | 83.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.73 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=335.43 Aligned_cols=433 Identities=9% Similarity=-0.026 Sum_probs=255.2
Q ss_pred CcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005178 185 METIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAIL 264 (710)
Q Consensus 185 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 264 (710)
+++..|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|+.+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 34555555555555555555555555555532 345555555555555555555555555555332 34555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 265 DVYAKSGKVEEVLSLYERGVAS---------------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
.+|.+.|++++|+++|+++... |.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence 5555555555555555532111 1122345555555555555555555555555554321 12222
Q ss_pred --------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 330 --------------------------------------YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 330 --------------------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222244455566667777777666654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|.+.|++++|+++|+++.+.+.. +..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHH
Confidence 77777777777777776655433 55566667777777777777777777766544 4566667777777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|..+|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777665432 2456677777777777777777777777665432 2555666677777777777777777777776
Q ss_pred hCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-------cCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 532 ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-------EVDAR--RPFCNCLIDICRNRNLNERAHELLYLGTLYGLY 602 (710)
Q Consensus 532 ~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 602 (710)
..|++...+..++..+...| ..++|.++++++ +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 546 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKS-DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-- 546 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred hCCCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 66666666666665555444 455555555443 33555 3467777777777777777777777766543
Q ss_pred Ccccccccccchhccccc-ChHHHHHHHHHHHHHH
Q 005178 603 PGLHNKTLDEWSLDVRSL-SVGAAQTALEEWMWTL 636 (710)
Q Consensus 603 ~~~~~~~~~~w~~~~~~~-~~G~~~~Al~~~~~~~ 636 (710)
|+ +...|..+...+ ..|+.++|+..|.+.+
T Consensus 547 p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 547 TN----DANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp SC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 334455444444 3477777777665544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=323.03 Aligned_cols=426 Identities=8% Similarity=-0.038 Sum_probs=364.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+.+|+.+... .|+..++..++.+|.+.|++++|..+|+++... .++..+++.++.+|.+.|++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 3445567799999999998754 467789999999999999999999999988643 57899999999999999999
Q ss_pred HHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH------
Q 005178 239 DEAIEWFERMYKT---------------GLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSV------ 297 (710)
Q Consensus 239 ~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~------ 297 (710)
++|+++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhc
Confidence 9999999853221 223358899999999999999999999999998764 223333333
Q ss_pred --------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 298 --------------------------------LGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGL 345 (710)
Q Consensus 298 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 345 (710)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHH
Confidence 355667889999999999999875 5799999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999875 4477889999999999999999999999998653 44789999999999999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 426 SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
.. +.+..+|+.++.+|.+.|++++|..+|+++.+.+. .+..+|..++.+|.+.|++++|+++|+++.+... .+..+
T Consensus 402 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 477 (597)
T 2xpi_A 402 MD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLL 477 (597)
T ss_dssp HC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 65 57899999999999999999999999999998653 3789999999999999999999999999997543 36889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------CCcH-HHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCC-ChhhHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQA------NPKL-VAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDA-RRPFCNCL 576 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~p~~-~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~l 576 (710)
|+.++.+|.+.|++++|.++|+++.+. +|+. ...+..++.++...| ..++|.+++++ +...| +..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK-MYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999877 6765 567777777766667 56777777766 44555 45689999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 005178 577 IDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+.+|.+.|++++|.++|+++++.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=270.66 Aligned_cols=187 Identities=13% Similarity=0.144 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 005178 188 IFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL---------FDEAIEWFERMYKTGLMPDEV 258 (710)
Q Consensus 188 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 258 (710)
.+++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666677777777777777777777777777777777777776665543 455666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMG 338 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 338 (710)
+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK 374 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (710)
+.|++++|.++|++|.+.|+.|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666665656666666655555543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-26 Score=242.84 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=320.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3456678999999998887763 5567778888888999999999999999888763 447789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|++.|+++.+.... +...|..+..+|.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|..+|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999887432 57789999999999999999999999998864 3346677888889999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
+.. +-+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|+..|++..+.... +..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 863 3357789999999999999999999999998864 445778888999999999999999999998876433 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+..+|...|++++|++.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+...+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999876 5678899999999999999999999999998864 347889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.|++++|+..|+++++.. ..+..++..+..+|.+.|++++|...|+++.+++|+...++..++..
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence 9999999999999998642 22467888999999999999999999999999999988877777654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=268.60 Aligned_cols=206 Identities=17% Similarity=0.259 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 005178 204 QLIEQLANEMVSNEIELDN-ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK---------V 273 (710)
Q Consensus 204 ~~A~~l~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 273 (710)
..++.+.+++.+.++.... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666666666655443 45777788888888888888888888888888888888888888876654 5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77778888888778888888888888888888888888888888887777888888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 354 VESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 87788888888888888888888888888888888877777888888777777764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-26 Score=240.32 Aligned_cols=381 Identities=12% Similarity=0.067 Sum_probs=281.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 272 (710)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|..+++...+.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455677888888888888887753 2244555666667888888888888888887764 3377888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 273 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
+++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888887753 3345678888888888888888888888887753 22445677777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 005178 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432 (710)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 432 (710)
+.+.. +.+..+|..+...|.+.|++++|+..|+++.+.+.. +...+..+...+...|++++|...|.+..... +.+
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCC
Confidence 87753 345677888888888888888888888888876433 56778888888888888888888888887765 556
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
..++..+..+|...|++++|...|+++.+.+.. +..+|..+..+|.+.|++++|+..|+++++.. ..+..++..+..+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 788888888888888888888888888875432 56778888888888888888888888887653 3356678888888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHHhCC
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICRNRN 584 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~~~g 584 (710)
+...|++++|.+.++++.+..|+.......++.++...| ..++|...+++ +...|+.. .|..++.++.+.|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT-CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888888888888888777776666666665555545 33444444433 34444432 5555555555444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-22 Score=215.50 Aligned_cols=327 Identities=13% Similarity=0.018 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.+...|..+...|.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|+..|+++.+.+.. +...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 4567778888888888888888888888877652 235677777777888888888888888888776533 57777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 264 LDVYAKSGKVEEVLSLYERGVASGWKPD-P---IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 264 i~~~~~~g~~~~A~~~~~~~~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
..+|.+.|++++|...|+++.+.. |+ . ..+..++..+.. ..+..+...+.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~ 155 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFG 155 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHH
Confidence 888888888888888888877653 33 3 455555443110 011122333445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|+.+|+++.+... .+..++..+..+|...|++++|...
T Consensus 156 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555432 23445555555555555555555555555554321 2455555555555556666666666
Q ss_pred HHHHHhCCCCCCCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCcC-----HHHHHHHHHHHHhcC
Q 005178 420 FEDMKLSDYCKPDNYSYTAM------------LNIYGSGGNVDNAIELFEEMSELGVAIN-----VMGCTCLIQCLGKAR 482 (710)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g 482 (710)
|+++.+.. +.+...+..+ +..|...|++++|..+|+++.+.. |+ ...|..+..++.+.|
T Consensus 234 ~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCC
Confidence 65555443 3334444333 666777777777777777776632 33 345666677777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
++++|+..++++++.. ..+...|..+..+|...|++++|...++++.+++|++..+...++
T Consensus 310 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 7777777777776532 124566777777777777777777777777777777766666555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-23 Score=224.66 Aligned_cols=403 Identities=11% Similarity=-0.036 Sum_probs=301.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDV 266 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 266 (710)
...+......+.+.|++++|+..|+++.... |+...|..+..++.+.|++++|++.|+++.+.+.. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4556677788888888999988888888764 68888888888888888899998888888877533 67788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------
Q 005178 267 YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL------------------------- 321 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 321 (710)
|.+.|++++|+..|+++...+ +++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 888889999988888888765 334444444444444333333332222111100
Q ss_pred ----------CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHH
Q 005178 322 ----------GV---------QPNLVVYNTLLEAMGK---AGKPGLARSLFDEMVE-----SGLT--------PDEKTLT 366 (710)
Q Consensus 322 ----------g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~~~~ 366 (710)
.. +.+...+..+...+.. .|++++|..+|+++.+ ..-. .+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 1113444444444444 7899999999999887 3111 2345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+...|...|++++|...|+++.+.... ...+..+...|...|++++|...++++.+.. +.+...+..+...|...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHh
Confidence 8888899999999999999998886544 7788888999999999999999999988776 56778889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVI 526 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 526 (710)
|++++|...|+++.+.... +...+..+...|...|++++|+.+|+++.+.... +...+..+..+|...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999886443 6778888899999999999999999998864322 4567888888999999999999999
Q ss_pred HHHHHhCCcHHH------HHHHHHhhcCC---cccHHHHHHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 527 TCLQQANPKLVA------FLNLIEDNSTG---FENIKEEFRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYL 595 (710)
Q Consensus 527 ~~~~~~~p~~~~------~~~~L~~~~~~---~~~~~~~a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 595 (710)
+++.+..|+... .+..++.++.. .| ..++|..+++. +...|+ ..+|..++.+|.+.|++++|.+.|++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999888777643 66777777666 56 56666666655 444554 34788999999999999999999999
Q ss_pred HHHcC
Q 005178 596 GTLYG 600 (710)
Q Consensus 596 ~~~~~ 600 (710)
++...
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 87543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=210.51 Aligned_cols=316 Identities=11% Similarity=0.038 Sum_probs=201.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+.+|+.+... .+.+..+|..+..+|...|++++|+..|+++.+.+. .+...+..+..+|.+.|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHH
Confidence 345567899999999999876 356789999999999999999999999999998742 36788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 240 EAIEWFERMYKTGLMPDE---VTYSAILDV------------YAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
+|.+.|+++.+.... +. ..+..++.. |.+.|++++|+..|+++.+.. +.+..++..++.+|.+
T Consensus 112 ~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 999999999986422 34 667766555 444555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 190 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------- 254 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------- 254 (450)
T ss_dssp TTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-------------
Confidence 555555555555544321 2234444444555555555555555555444331 1111112111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
. ....+..+...|...|++++|..+|+++.+.. +.+ ...|..+..+|.+.|++++|...++++.
T Consensus 255 ----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 255 ----K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp ----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 00011223667777788888888888777654 223 3467777778888888888888888877
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLL 510 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 510 (710)
+... .+...|..+..+|...|++++|+..|+++++. .|+ ...+..+.
T Consensus 323 ~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 323 QMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 6432 25677778888888888888888888887763 343 33444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-22 Score=217.71 Aligned_cols=372 Identities=10% Similarity=0.030 Sum_probs=237.1
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..|+.+.... |+...|..+..+|.+.|++++|+..|+++.+.+ +.+...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 4556678999999999998864 689999999999999999999999999999874 336678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---------------------------------------------------------------
Q 005178 240 EAIEWFERMYKTGLMPD--------------------------------------------------------------- 256 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~--------------------------------------------------------------- 256 (710)
+|+..|+++.+.+.. +
T Consensus 91 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999999876531 2
Q ss_pred ----------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHh
Q 005178 257 ----------------EVTYSAILDVYAK---SGKVEEVLSLYERGVA-----SGW--------KPDPIAFSVLGKMFGE 304 (710)
Q Consensus 257 ----------------~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~ 304 (710)
...+..+...+.. .|++++|+.+|+++.+ ..- +.+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 2222222222222 5666666666666655 210 1123455556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|..+|+++.+.. |+..++..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666666666666666543 235556666666666666666666666665543 23445556666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
|+++.+.... +...+..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+...
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 6666654332 44555666666666666666666666665544 34455666666666666666666666666654221
Q ss_pred C-cC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 465 A-IN----VMGCTCLIQCLGK---ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 465 ~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
. ++ ...|..+..+|.. .|++++|+..|+++.+... .+..++..+..+|...|++++|...|+++.+..|++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 1 11 2356666666666 6666666666666655321 134455566666666666666666666666666666
Q ss_pred HHHHHHH
Q 005178 537 VAFLNLI 543 (710)
Q Consensus 537 ~~~~~~L 543 (710)
......+
T Consensus 483 ~~~~~~~ 489 (514)
T 2gw1_A 483 EEKLQAI 489 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-20 Score=204.70 Aligned_cols=362 Identities=12% Similarity=0.108 Sum_probs=182.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 160 ILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 160 ~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
.+...+++++|+..|+.+.... +.+..+|..+..+|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH
Confidence 3455667888888888887763 5677888888888888999999999998888764 235677888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------------------------------------------------
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSG------------------------------------------------ 271 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g------------------------------------------------ 271 (710)
+|++.|+.+ .. .|+. ....+..+...+
T Consensus 111 ~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 111 DAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp HHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred HHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 998888633 22 1111 111122222223
Q ss_pred -------------------------------CHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCCHHHHH
Q 005178 272 -------------------------------KVEEVLSLYERGVASGWKPD--------PIAFSVLGKMFGESGDYDGIR 312 (710)
Q Consensus 272 -------------------------------~~~~A~~~~~~~~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~ 312 (710)
++++|+.+|+++.+.. |+ ..++..+...+...|++++|.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3444444444444432 22 112333444444445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENK 392 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 392 (710)
..|+++.+. .|+..+|..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|+..|+++.+..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 555554443 2334444444444555555555555555544432 2234444444455555555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCcC
Q 005178 393 WPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-----VAIN 467 (710)
Q Consensus 393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~ 467 (710)
.. +...+..+...|...|++++|.++++++.+.. +.+...+..+...|...|++++|...|+++.+.. ....
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 22 33444444455555555555555555544443 3334444445555555555555555555444321 0011
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 468 VMGCTCLIQCLGKA----------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 468 ~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
...+..+..+|.+. |++++|+..|+++.+... .+...+..+..+|...|++++|.+.|+++.++.|+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 12222333344444 555555555555443221 1233444444555555555555555555555544444
Q ss_pred H
Q 005178 538 A 538 (710)
Q Consensus 538 ~ 538 (710)
.
T Consensus 497 ~ 497 (537)
T 3fp2_A 497 E 497 (537)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-21 Score=211.75 Aligned_cols=400 Identities=13% Similarity=-0.002 Sum_probs=305.8
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
....|..+...+.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|++.|+++.+.... +...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHH
Confidence 34667888999999999999999999999864 347889999999999999999999999999987643 7889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHH---------
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSL------GVQPNLVVY--------- 330 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~--------- 330 (710)
+|...|++++|+..|+ .... .|+ .....+..+...+...+|..+++++... ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999997 4332 232 2223344556666678888888887542 112222221
Q ss_pred ---------------------HHHHHHH--------HHcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHh
Q 005178 331 ---------------------NTLLEAM--------GKAGKPGLARSLFDEMVESGLTPD-------EKTLTALIKIYGK 374 (710)
Q Consensus 331 ---------------------~~li~~~--------~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~li~~~~~ 374 (710)
..+...+ ...|++++|..+|+++.+.. +.+ ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 1111111 11257899999999998763 222 2356677788889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (710)
.|++++|...|+++.+.. |+...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|..
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999864 457888899999999999999999999999876 5788999999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
.|+++.+.... +...|..+..+|...|++++|+.+|+++.+.... +...+..+..+|...|++++|.+.|+++.+..|
T Consensus 332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99999986533 5788999999999999999999999999975422 456888899999999999999999999988766
Q ss_pred cHHHH------HHHHHhhcCCc----------ccHHHHHHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 535 KLVAF------LNLIEDNSTGF----------ENIKEEFRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 535 ~~~~~------~~~L~~~~~~~----------~~~~~~a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+.... ...++.++... | ..++|..++++ +...|+ ..+|..++.+|.+.|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEE-KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54321 22223333322 4 66777777765 445554 448899999999999999999999998
Q ss_pred HHcC
Q 005178 597 TLYG 600 (710)
Q Consensus 597 ~~~~ 600 (710)
++..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-19 Score=182.72 Aligned_cols=328 Identities=12% Similarity=0.017 Sum_probs=228.0
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
|+..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..|+++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666667777777777777777776642 224566666666777777777777777776665322 5566666667
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKP----DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (710)
.|...|++++|...|+++.+.. | +...+..+...+. ...+..+...+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 7777777777777777766542 3 2222322211100 011223356677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
++++|.++|+++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...|...|++++|.+.|+
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888777777653 34566777777777888888888888887776633 366777778888888888888888888
Q ss_pred HHHhCCCCCCCHHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHH
Q 005178 422 DMKLSDYCKPDNYSYT------------AMLNIYGSGGNVDNAIELFEEMSELGVAINV----MGCTCLIQCLGKARRID 485 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 485 (710)
+..+.. +.+...+. .+...+...|++++|...++++.+.... +. ..+..+..+|.+.|+++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 877665 34444443 3366788999999999999999885433 22 33556788899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+|+..|+++.+... .+..++..+..+|...|++++|.+.|+++.+.+|++..+...|+.+
T Consensus 290 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 290 EAIRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 99999999987532 2677888999999999999999999999999999988877766654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-18 Score=176.77 Aligned_cols=320 Identities=10% Similarity=0.026 Sum_probs=203.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 005178 159 LILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLF 238 (710)
Q Consensus 159 ~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 238 (710)
..+...+++++|+..|+.+.... +.+..+|..+..++...|++++|+..|+++.+.. +-+...|..+..++...|++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 34556778999999999998764 5678899999999999999999999999999863 23678889999999999999
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 239 DEAIEWFERMYKTGLM--PDEVTYSAI------------LDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 239 ~~A~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
++|...|+++.+.... .+...+..+ ...+...|++++|+..|+++.+.. +.+...+..+...|..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 9999999999886320 134444444 344455555555555555554432 2344445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.. +.+...+..+
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~---------------- 228 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY---------------- 228 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH----------------
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH----------------
Confidence 555555555555554432 2234444455555555555555555555544331 1111111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
..+. .......+...+...|++++|...++++.+.. +.+. ..+..+..+|...|++++|...++++.
T Consensus 229 -~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 229 -KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp -HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0000 00111233556777888888888888877755 2333 234556777888888888888888887
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCLLSV 512 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~ 512 (710)
+... .+...|..+..+|.+.|++++|+..|+++++. .|+ ...+..+..+
T Consensus 300 ~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 300 QMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKA 349 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 7532 26777888888888888888888888888764 344 3344444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-18 Score=176.71 Aligned_cols=285 Identities=10% Similarity=-0.049 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455666666667777777777777776543 3344555566667777777777777777776643 234566777777
Q ss_pred HHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 336 AMGKAG-KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 336 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
.+...| ++++|...|+++.+.. +.+...|..+...|...|++++|+..|+++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 777777 7777777777777653 334556777777777777888888777777765433 4455666777788888888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCcCHHHHHHHHHHHHhcCCHHH
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG--------VAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
+|.+.++++.+.. +.+...+..+...|...|++++|...++++.+.. ...+..+|..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 8888888887765 5667788888888888888888888888877631 12345678888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
|+..|+++.+.... +...+..+..+|...|++++|.+.++++.+++|++..+...++.++
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 88888888764322 4567778888888888888888888888888888877777776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-15 Score=165.27 Aligned_cols=352 Identities=13% Similarity=0.024 Sum_probs=298.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR----C 235 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~ 235 (710)
.++++.|+..|+..... .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 45789999999988765 356778888888988 899999999999999875 67777788888888 7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGD 307 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 307 (710)
+++++|+++|++..+.| +...+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998875 67888888888887 789999999999999874 78888889999988 899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAK 379 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 379 (710)
+++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998865 67788888888887 789999999999998764 55677778888887 89999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADI-----GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~ 451 (710)
+|+..|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| ++++
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHH
Confidence 9999999998764 566778888888887 89999999999998854 5677888888888867 7899
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVG 523 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 523 (710)
|..+|++..+.| +...+..+...|.. .+++++|+..|++..+.| +...+..|..+|.. .++.++|.
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998863 67888899999988 899999999999999876 56778888888888 89999999
Q ss_pred HHHHHHHHhCC---cHHHHHHHHHhhc
Q 005178 524 KVITCLQQANP---KLVAFLNLIEDNS 547 (710)
Q Consensus 524 ~~~~~~~~~~p---~~~~~~~~L~~~~ 547 (710)
..|+++.+.+| ++..+...|+..+
T Consensus 424 ~~~~~A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 424 AWFDTASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCcCCHHHHHHHHhcC
Confidence 99999998884 4666777777643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-16 Score=174.49 Aligned_cols=406 Identities=9% Similarity=0.034 Sum_probs=281.5
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAI 263 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 263 (710)
+.|...|..++. +.+.|++++|..+|+++++. .+-+...|...+..+.+.|++++|..+|+++++. .|+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 557778888887 46778888888888888875 2335677888888888888888888888888876 3577777776
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 005178 264 LDVY-AKSGKVEEVLS----LYERGVAS-GWK-PDPIAFSVLGKMFGE---------SGDYDGIRYVLQEMKSLGVQPNL 327 (710)
Q Consensus 264 i~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 327 (710)
+... ...|+.++|.+ +|++.+.. |.. .+...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566665554 66666542 433 346677777766554 67888888888888773111112
Q ss_pred HHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc--
Q 005178 328 VVYNTLLEAM-------------GKAGKPGLARSLFDEMV------ESG---LTPD--------EKTLTALIKIYGKA-- 375 (710)
Q Consensus 328 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~-- 375 (710)
..|....... .+.+++..|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3333322211 12345777777776632 211 2443 24555555433322
Q ss_pred --CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCCHHH
Q 005178 376 --RWA----KDALELWERMRENKWPMDFILYNTLLNMCAD-------IGLVE-------EAERLFEDMKLSDYCKPDNYS 435 (710)
Q Consensus 376 --g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~ 435 (710)
++. +.+..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.- .+.+...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHH
Confidence 222 47778898888763 3377888888888775 68877 8999999998632 1567889
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV- 512 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 512 (710)
|..++..+.+.|++++|..+|+++++. .|+ ...|..++..+.+.|++++|..+|++.++.... +...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 999999999999999999999999984 443 358999999999999999999999999875322 23333322222
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cC---CCC--hhhHHHHHHHHHhCCCH
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EV---DAR--RPFCNCLIDICRNRNLN 586 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~---~~~--~~~~~~l~~~~~~~g~~ 586 (710)
+...|+.++|.++|+.+.+..|++..++..++..+...| ..++|..++++. .. .|+ ..+|...+.....+|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g-~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN-EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT-CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC-CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999999999998888877777666656 567777777653 22 222 22888889999999999
Q ss_pred HHHHHHHHHHHHc
Q 005178 587 ERAHELLYLGTLY 599 (710)
Q Consensus 587 ~~A~~~~~~~~~~ 599 (710)
+.+..+++++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-15 Score=166.26 Aligned_cols=353 Identities=12% Similarity=0.053 Sum_probs=171.1
Q ss_pred cHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 005178 186 ETIFYNVTMKSLRF----GRQFQLIEQLANEMVSNEIELDNITYSTIITCAKR----CNLFDEAIEWFERMYKTGLMPDE 257 (710)
Q Consensus 186 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 257 (710)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 445555555555554432 33444444444444 445555555555554432 34
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 258 VTYSAILDVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 258 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
..+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444444444444 445555555555554433 34444444444444 444555555555544432 3444
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 330 YNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYN 401 (710)
Q Consensus 330 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 401 (710)
+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4444444444 445555555555544432 23344444444443 444555555555444432 233344
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 402 TLLNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-----GNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 402 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
.+...|.. .++.++|.+.|++..+.+ +...+..|...|... +++++|...|++..+.| +...+.
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 44444444 444555555554444322 233444444444443 44555555554444432 233444
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 473 CLIQCLGKAR---RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 473 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
.+...|...| +.++|++.|++..+.| +...+..|...|.. .++.++|.+.|+++.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~--------------- 394 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA--------------- 394 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---------------
Confidence 4444444433 3444444444444432 33344444444444 344444444443332
Q ss_pred hcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCC
Q 005178 546 NSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRN----RNLNERAHELLYLGTLYGL 601 (710)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 601 (710)
...+...+..|+.+|.+ .+++++|.+.|+++.+.+.
T Consensus 395 --------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 --------------------EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred --------------------hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 22344577788888888 8999999999999987763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-17 Score=170.24 Aligned_cols=292 Identities=9% Similarity=-0.098 Sum_probs=240.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 289 KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL 368 (710)
Q Consensus 289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 368 (710)
+.+...+..++..+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4567778888999999999999999999998764 3355567778889999999999999999998864 4467788889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 369 IKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 369 i~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
...|...| ++++|...|++..+.... +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 999999999999987543 67789999999999999999999999999876 566778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCh
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--------VKPDDRLCGCLLSVVSLCETS 519 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~ 519 (710)
++++|...++++.+... .+...+..+...|...|++++|+..|+++.+.. ...+..++..+..+|...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999998643 367889999999999999999999999998631 123356888999999999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHH-HhCCCHH
Q 005178 520 EDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDIC-RNRNLNE 587 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~-~~~g~~~ 587 (710)
++|...++++.+..|++..++..++.++...| ..++|..++++ +...|+.. .+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMG-NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT-CHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhc-cHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999998888888887776666 45556665554 55666544 666777766 4555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-18 Score=175.05 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=197.7
Q ss_pred cCCHHHHHH-HHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 235 CNLFDEAIE-WFERMYKTGL---MPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 235 ~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
.|++++|++ .|++..+... ..+...+..+...|.+.|++++|+..|+++++.. +.+..+|..+...|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554443311 1123445666666777777777777777776653 3456666677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 005178 311 IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTA---------------LIKIYGKA 375 (710)
Q Consensus 311 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~ 375 (710)
|...|+++.+.. +.+..++..+...+...|++++|...|+++.+... .+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776643 23566677777777777777777777777766531 11111110 13333378
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIE 454 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (710)
|++++|+..|+++.+..... +..++..+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999998888764332 57788888888999999999999999888765 5678888899999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHH
Q 005178 455 LFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP----------DDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 455 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
.|+++.+... .+...+..+..+|.+.|++++|+..|+++++..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999887543 357788888899999999999999998887532211 15688888999999999998888
Q ss_pred HHHHH
Q 005178 525 VITCL 529 (710)
Q Consensus 525 ~~~~~ 529 (710)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 77643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-17 Score=172.64 Aligned_cols=289 Identities=13% Similarity=-0.010 Sum_probs=201.7
Q ss_pred cCChHHHHH-HHHHHHHCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 200 GRQFQLIEQ-LANEMVSNEIE-L--DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275 (710)
Q Consensus 200 ~g~~~~A~~-l~~~m~~~g~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 275 (710)
.|++++|.. .|++....... | +...+..+...+.+.|++++|+..|+++.+.... +..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 356666665 55544332110 1 2334555666666667777777777766665422 55666666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHHc
Q 005178 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNT---------------LLEAMGKA 340 (710)
Q Consensus 276 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~ 340 (710)
|+..|+++.+.. +.+..++..+...|...|++++|...++++.+.... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777666543 345666666667777777777777777766664311 1111110 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005178 341 GKPGLARSLFDEMVESGLT-PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERL 419 (710)
Q Consensus 341 g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 419 (710)
|++++|...|+++.+.... ++..++..+...|.+.|++++|+..|+++.+... .+...+..+...|...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999876421 1578888999999999999999999999887643 3678899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc----------CHHHHHHHHHHHHhcCCHHHHHH
Q 005178 420 FEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI----------NVMGCTCLIQCLGKARRIDDLVR 489 (710)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~ 489 (710)
|+++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|.+.|+.++|..
T Consensus 274 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99998876 5778899999999999999999999999988743221 26889999999999999999998
Q ss_pred HHHHH
Q 005178 490 VFGVS 494 (710)
Q Consensus 490 ~~~~m 494 (710)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 88643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-16 Score=167.64 Aligned_cols=384 Identities=11% Similarity=0.018 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-----E---IELDNITYSTIITCAKRCNLFDEAIEWFERMYKT---- 251 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 251 (710)
+.....||.+..++...|++++|++.|++.++. + ......+|+.+..+|...|++++|...|++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334566777777777788888888777776531 0 1123456777777777777777777777666542
Q ss_pred -C-C-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 005178 252 -G-L-MPDEVTYSAILDVYAKSG--KVEEVLSLYERGVASGWKPDPIAFSVLGKM---FGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 252 -g-~-~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
+ . .....++..+..++.+.| ++++|+..|++.++.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 0 0 112445555555554433 4667777777666542 2234444444333 334455566666666665542
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 324 QPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 324 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
+.+..++..+...+.. .+++++|.+++++..... +.+...+..+...|...|++++|+..|++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 2244445444444433 345566666666665543 334555666666666666666666666666654322 4445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...|...+... .... ... ........+.+++|...+++..+.... +...+..+...|.
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~--~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLR--ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC--------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------hhHH--HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHH
Confidence 555544443211100 0000 000 000111123467888888888775432 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDR--LCGCLLS-VVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEE 556 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~ 556 (710)
..|++++|+..|++.++....+... .+..+.. .+.+.|+.++|+..|+++.++.|+.......+ ..
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~-----------~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK-----------DK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH-----------HH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-----------HH
Confidence 9999999999999998865443322 2333332 24578999999999999999999876543332 22
Q ss_pred HHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 557 FRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 557 a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
+..+++. +...|+ ..+|..|+.+|...|++++|++.|+++++.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2333322 333443 4489999999999999999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-15 Score=163.75 Aligned_cols=364 Identities=10% Similarity=0.109 Sum_probs=270.2
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHH
Q 005178 163 SLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIIT-CAKRCNLFDEA 241 (710)
Q Consensus 163 ~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A 241 (710)
..++++.|+.+|+.+... .|.+...|...+..+.+.|++++|..+|++++.. .|+...|...+. .....|+.++|
T Consensus 24 ~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 356799999999999877 5778899999999999999999999999999986 468888888776 33456777766
Q ss_pred HH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 005178 242 IE----WFERMYKT-GLMP-DEVTYSAILDVYAK---------SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMF---- 302 (710)
Q Consensus 242 ~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---- 302 (710)
.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.++.........|.......
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 65 77777654 5443 56788888887665 789999999999999831111123444332211
Q ss_pred ---------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHH
Q 005178 303 ---------GESGDYDGIRYVLQEMK------SLG---VQPN--------LVVYNTLLEAMGKA----GKP----GLARS 348 (710)
Q Consensus 303 ---------~~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~ 348 (710)
.+.++++.|..++.++. +.. ++|+ ...|...+...... ++. ..+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 13456788888777642 111 2343 24566555443332 222 47788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 349 LFDEMVESGLTPDEKTLTALIKIYGK-------ARWAK-------DALELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 349 ~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 999988753 4567888888888775 68876 89999999986323346889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 005178 415 EAERLFEDMKLSDYCKPDN-YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC-LGKARRIDDLVRVFG 492 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~ 492 (710)
+|..+|+++.+.. +.+. ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.++|..+|+
T Consensus 339 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 339 KVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 9999999999864 3343 58999999999999999999999999885322 33444333322 346899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 493 VSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 493 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+.++... -+...|..++..+.+.|+.++|..+|+++....|.
T Consensus 416 ~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 416 LGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9987432 25778999999999999999999999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-18 Score=174.88 Aligned_cols=265 Identities=14% Similarity=0.049 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEA 336 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 336 (710)
...+..+...+.+.|++++|+.+|+++++.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446667777777777777777777777653 4456777777777777777777777777777653 2356677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPD-----------EKTLTALIKIYGKARWAKDALELWERMRENKWP-MDFILYNTLL 404 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li 404 (710)
|...|++++|...|+++.+.. |+ ...+..+...|.+.|++++|+.+|+++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776542 21 223344567778888888888888888776432 1577888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
..|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..+|..+..+|.+.|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 88888888888888888888765 567888888888888888888888888888775422 477788888888888888
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 485 DDLVRVFGVSIDRGVK-----------PDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~-----------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
++|+..|+++++.... .+..+|..+..++...|+.+.+.++.+.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888888888753211 0245777788888888887776665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-18 Score=172.89 Aligned_cols=289 Identities=12% Similarity=0.134 Sum_probs=138.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCN 236 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 236 (710)
+..++..+++.++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 3455677888999999999872 2348999999999999999999999653 47789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 237 LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQ 316 (710)
Q Consensus 237 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 316 (710)
++++|+..++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988777664 4567889999999999999999988884 3777899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005178 317 EMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMD 396 (710)
Q Consensus 317 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 396 (710)
.+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ..+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 77 36889999999999999999999998 27889999999999999999996655442 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCc------CH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG--GNVDNAIELFEEMSELGVAI------NV 468 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~ 468 (710)
+.-...++..|.+.|.+++|..+++...... +-....|+-|.-+|++- +++.+.++.|..- .+++| +.
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~ 282 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQA 282 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 4456678999999999999999999998766 57788888888888774 4555666655422 12322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
..|..++-.|.+.+++|.|....
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 67899999999999999988744
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-14 Score=164.66 Aligned_cols=372 Identities=11% Similarity=0.067 Sum_probs=249.3
Q ss_pred HHhccCHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 161 LNSLKFWQKSYFFFNWIKSQNL-FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFD 239 (710)
Q Consensus 161 l~~l~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 239 (710)
+...+.+.+|+.+++++...+. +..+....+.++.+..+. +..+..+...+.... + ...+...+...|.++
T Consensus 995 f~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFE 1066 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHH
Confidence 3344456677777776653322 234455566666555555 334444444333311 1 233455666777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 240 EAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 240 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
+|..+|++.. -.....+.++. ..+++++|.+++++. -+..+|..+..++...|++++|+..|.+.
T Consensus 1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 8877777752 12222233322 567777777777755 24677778888888888888888887553
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005178 320 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFIL 399 (710)
Q Consensus 320 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 399 (710)
-|...|..++.+|.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 366677778888888888888888887766653 33333344777788887777533332 1 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 667778888888888888888774 26778888888888888888888766 35678888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC--CcccHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST--GFENIKEEF 557 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~--~~~~~~~~a 557 (710)
..|++..|...... +..+...+..++..|.+.|.+++|+.+++...+++|.+..+.+-|+..+. ..++..+.+
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888777776543 33356677789999999999999999999999999988888876765443 334344444
Q ss_pred HHHHHhccCCC------ChhhHHHHHHHHHhCCCHHHHH
Q 005178 558 RNVIKDTEVDA------RRPFCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 558 ~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 590 (710)
+.+..++...+ ....|.-++-.|.+.|+++.|.
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44445555444 2337999999999999999997
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=170.99 Aligned_cols=347 Identities=12% Similarity=0.098 Sum_probs=168.8
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 198 RFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVL 277 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 277 (710)
-+.|++++|.++++++. +..+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 47788999999999983 3359999999999999999999999653 47789999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 005178 278 SLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG 357 (710)
Q Consensus 278 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 357 (710)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988887764 4667889999999999999999998884 377789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 005178 358 LTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYT 437 (710)
Q Consensus 358 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 437 (710)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHH
Confidence 36999999999999999999999998 288999999999999999999966655432 3444455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK--ARRIDDLVRVFGVSIDRGVKP------DDRLCGCL 509 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~~~~~~~l 509 (710)
.++..|.+.|++++|+.+++...... +-....|+-|..+|++ -++..+.++.|.. ..++.| +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHH
Confidence 79999999999999999999998755 4467788888888876 4556666766653 222322 33467888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHH
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERA 589 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 589 (710)
+..|.+.++++.|...+-.-...-=++..|.+++..... .+-..+.+.-++.. .| ...+-|+.++...=+..++
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n-~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~ 362 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN-VELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRA 362 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS-THHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhH-HHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHH
Confidence 888888888888876432221111234556666654321 12123333333422 22 2567777777777777777
Q ss_pred HHHHHH
Q 005178 590 HELLYL 595 (710)
Q Consensus 590 ~~~~~~ 595 (710)
.++|++
T Consensus 363 v~~~~~ 368 (449)
T 1b89_A 363 VNYFSK 368 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=166.90 Aligned_cols=265 Identities=11% Similarity=-0.045 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 224 TYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFG 303 (710)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 303 (710)
.|..+...+.+.|++++|+++|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+.. +.+..+|..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555555566666666666665554322 45556666666666666666666666665542 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQ---------PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDEKTLTALIKIYG 373 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~ 373 (710)
..|++++|..+|+++.+.... .....+..+...+...|++++|..+|+++.+.... .+..++..+...|.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 666666666666666543100 01223344567777788888888888888775311 15777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
+.|++++|+..|+++.+... .+..+|..+..+|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877643 367888888899999999999999999888775 567888999999999999999999
Q ss_pred HHHHHHHHcCCC-----------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 454 ELFEEMSELGVA-----------INVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 454 ~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
..|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999998763211 1367899999999999999988887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=162.11 Aligned_cols=278 Identities=10% Similarity=-0.015 Sum_probs=165.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
+..+...+...|++++|+.+|+++.+.... +...+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444555555555555555555554322 44455555555555555555555555555432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTAL-IK-IYGKARWAKDAL 382 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~A~ 382 (710)
.|++++|...++++.+.... +...+..++.. .++......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555555443210 11111111000 0000001111 11 256667778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
..++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+.
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888877765433 67777778888888888888888888877765 566778888888888888888888888887775
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-----------DDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
.. .+...|..+..+|.+.|++++|+..|+++.+..... +...|..+..++...|++++|..++++..+
T Consensus 236 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 42 256777888888888888888888888877532221 355777788888888888888877765433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-16 Score=154.84 Aligned_cols=262 Identities=12% Similarity=0.122 Sum_probs=185.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 267 YAKSGKVEEVLSLYERGVASGWKPDP--IAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG 344 (710)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 344 (710)
....|++..|+..++..... .|+. .....+..+|...|++++|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34567777777777665432 2332 34455667777777777777655441 2455667777777777777788
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 345 LARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 345 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
+|++.++++...+..| +...+..+..+|.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888887777665434 455566666777788888888887776 346777778888888888888888888888
Q ss_pred HhCCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 424 KLSDYCKPDNYS--YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 424 ~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
.+.. +.+... ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|+..|+++++....
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 7764 223211 1233444555688889999998888763 347788888888889999999999999888874322
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHhCCcHHHHHHHHH
Q 005178 502 DDRLCGCLLSVVSLCETSED-VGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+..++..++.++...|+.++ +.++++++.+++|++..+.++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888888888888865 56888899999999887776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-16 Score=157.87 Aligned_cols=280 Identities=13% Similarity=-0.060 Sum_probs=206.5
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
+...+..+...+...|++++|..+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 34456778889999999999999999998864 23778888899999999999999999999998753 37889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCH
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE--AMGKAGKP 343 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~ 343 (710)
.|...|++++|+..|+++.+.. +.+...+..++..+ |+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999999863 22233333221100 11111112212 25556667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
++|...++++.+.. +.+...+..+...|.+.|++++|...++++.+... .+...+..+...|...|++++|.+.|+++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766553 33566677777777777777777777777776532 25677888888888888888888888888
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 424 KLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-----------NVMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 424 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
.+.. +.+..++..+...|...|++++|...|+++.+..... +...|..+..+|.+.|++++|..+++
T Consensus 233 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7765 5678888888999999999999999998887743321 46788889999999999999998886
Q ss_pred HH
Q 005178 493 VS 494 (710)
Q Consensus 493 ~m 494 (710)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 54
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-15 Score=160.60 Aligned_cols=372 Identities=7% Similarity=-0.053 Sum_probs=232.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC-------CCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CC-CCH
Q 005178 157 ALLILNSLKFWQKSYFFFNWIKSQN-------LFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSN-----E-IE-LDN 222 (710)
Q Consensus 157 ~~~~l~~l~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~-p~~ 222 (710)
.-.++...+++++|+..|++..+.. ..+....+|+.+..+|...|++++|...+++..+. + .. ...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 3456667789999999999875421 12345678999999999999999999999988652 1 11 134
Q ss_pred HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 223 ITYSTIITCAKRC--NLFDEAIEWFERMYKTGLMPDEVTYSAILDVY---AKSGKVEEVLSLYERGVASGWKPDPIAFSV 297 (710)
Q Consensus 223 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 297 (710)
.++..+..++... +++++|++.|++..+.... +...+..+..++ ...++.++|++.|++.++.. +.+..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHH
Confidence 6666666566554 4799999999999987533 566666665553 45678889999999988764 445667766
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 298 LGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373 (710)
Q Consensus 298 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (710)
+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+.. +.+..++..+...|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 6655554 467889999999988764 3467789999999999999999999999998764 345667777776664
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAI 453 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 453 (710)
..+.... ... ...........+..+.|...|+...+.. +.+..++..+...|...|++++|.
T Consensus 293 ~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 293 AKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHH
Confidence 3221110 000 0000011111223566666676666654 445556666777777777777777
Q ss_pred HHHHHHHHcCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 454 ELFEEMSELGVAINVM--GCTCLIQ-CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 454 ~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
..|++.++....+... .+..+.. .+...|+.++|+..|++.++ +.|+...... ....+.++++...
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHH
Confidence 7777776644332211 1222222 23356777777777777766 3343322211 1234455566666
Q ss_pred HhCCcHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 005178 531 QANPKLVAFLNLIEDNSTGFENIKEEFRNVIK 562 (710)
Q Consensus 531 ~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~ 562 (710)
+.+|++..++..||.++...| ..++|.++++
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g-~~~~A~~~y~ 454 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNE-KMQQADEDSE 454 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHH-HCC-------
T ss_pred HhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 667777666666766655555 3344444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-16 Score=154.54 Aligned_cols=250 Identities=14% Similarity=0.076 Sum_probs=151.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 232 AKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGI 311 (710)
Q Consensus 232 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 311 (710)
....|++..|+..++++..............+..+|...|+++.|+..++.. -+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345666666666655433211111233444556666666666666554331 244555666666666666667777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005178 312 RYVLQEMKSLGVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRE 390 (710)
Q Consensus 312 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (710)
++.++++...+..| +...+..+..++...|++++|++.|++ +.+...+..++..|.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77776666554333 344555556666667777777766665 34556666666677777777777777777666
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC
Q 005178 391 NKWPMDFILY---NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN 467 (710)
Q Consensus 391 ~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 467 (710)
.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..+|.+.|++++|...|+++++.... +
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~ 233 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-H 233 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 53 232111 122233334467777777777777664 566777777777777777777777777777665432 5
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005178 468 VMGCTCLIQCLGKARRIDD-LVRVFGVSID 496 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 496 (710)
..++..++..+...|+.++ +.++++++++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6677777777777777755 4567777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-18 Score=187.03 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKS---LGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
.+||+||++|++.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+||++||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3444555555555555555555444432 2444555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 370 KIYGKARW-AKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 370 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
.++++.|+ .++|.++|++|.+.|+.||.++|+.++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 55555444 244445555555555555555555444433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=181.40 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 223 ITYSTIITCAKRCNLFDEAIEWFERMYK---TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLG 299 (710)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 299 (710)
.|||++|.+|++.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655442 3555566666666666666666666666666665555556666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 300 KMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 300 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 65555555 34555556666555555565555555544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-15 Score=143.81 Aligned_cols=238 Identities=13% Similarity=0.094 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESG--LTPD----EKTLTA 367 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ 367 (710)
.|..+...+...|++++|..+|+++.+.. .+..+|..+..++...|++++|...|+++.+.. ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555443 344555555555555555555555555554321 0111 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
+...|...|++++|...|++..+.. |+ ...+...|++++|...++++.... +.+...+..+...|...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhc
Confidence 6666666666666666666666532 22 134555667777777777777654 455667777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVIT 527 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 527 (710)
++++|...|+++.+.... +...|..+..+|.+.|++++|+..|+++++... .+...|..+..+|...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888888888888775432 577788888888888888888888888876432 246677788888888888888888888
Q ss_pred HHHHhC------CcHHHHHHHHHhh
Q 005178 528 CLQQAN------PKLVAFLNLIEDN 546 (710)
Q Consensus 528 ~~~~~~------p~~~~~~~~L~~~ 546 (710)
++.++. |++..+...|..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 888777 7777777666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-13 Score=151.00 Aligned_cols=329 Identities=12% Similarity=0.127 Sum_probs=241.0
Q ss_pred HHHHhhCCCCCCHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 005178 142 LRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD 221 (710)
Q Consensus 142 ~~~l~~~~~~~~~~~~~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 221 (710)
...+..+. .-...+...++..++.+++|..+|+++. ......+.++. ..+++++|.+++++. -+
T Consensus 1041 ~eyI~kLd-~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv------n~ 1104 (1630)
T 1xi4_A 1041 MEYINRLD-NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC------NE 1104 (1630)
T ss_pred HHHHHHhh-hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc------CC
Confidence 33333333 3345566677778888899998888762 12222333332 677888888888755 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKM 301 (710)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 301 (710)
..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 678888888999999999999988664 377888888999999999999999998877653 444444458888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDA 381 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 381 (710)
|++.+++++.... .+ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|
T Consensus 1177 YAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 8888888854433 22 356677778888899999999999999885 3688889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 382 LELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.
T Consensus 1241 IEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1241 VDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99888773 6688888888888899988888876653 34566777888899999999999999988776
Q ss_pred cCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHH
Q 005178 462 LGVAINVMGCTCLIQCLGK--ARRIDDLVRVFGVSIDRGVKP------DDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 462 ~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
.. +-....|+-+...|++ -++..+++++|..-. ++.+ +...|..++..|.+.|+++.|...
T Consensus 1309 Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1309 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred cC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44 2345567666666665 445666777776432 2322 345788888888888888888753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-14 Score=136.95 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV--QPN----LVVYN 331 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 331 (710)
..+..+...+...|++++|+..|+++.+.. .+...|..+..+|...|++++|...+++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555555555555555555555544 4455555555555556666666655555544210 111 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005178 332 TLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG 411 (710)
Q Consensus 332 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 411 (710)
.+...+...|++++|...|+++.+. .|+. ..+.+.|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 6666666666666666666666654 2332 2345556677777777777665222 4556667777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
++++|...|+++.+.. +.+...|..+..+|...|++++|...|+++.+... .+...|..+..+|.+.|++++|+..|
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888887777765 45677777788888888888888888888777542 25677777778888888888888888
Q ss_pred HHHHH
Q 005178 492 GVSID 496 (710)
Q Consensus 492 ~~m~~ 496 (710)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.2e-14 Score=138.17 Aligned_cols=249 Identities=10% Similarity=0.005 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD--EKTLTALIKI 371 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~ 371 (710)
.+......+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|+..|+++.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566677777777777777776643 12344666677777777777777777777776321111 2346777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|...|++++|+..|++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887775433 56778888888888999999999998888765 5677888888834444559999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRG-VKPD------DRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~ll~~~~~~g~~~~ 521 (710)
|...|+++.+.... +...+..+..++...|+ +++|+..|+++++.. -.|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998885432 46777788888888888 888888888887531 1233 2477788899999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 522 VGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
|.+.++++.+++|++..+...++...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999999999888887643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=132.29 Aligned_cols=196 Identities=16% Similarity=0.085 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
..+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+.... +...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444444444444444444444444332 223344444444444444444444444444443221 334444444444
Q ss_pred HHc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 408 ADI-----------GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 408 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
... |++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.. .+...+..+..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 444 67777777777776655 4556667777777777777777777777777665 46666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
+|...|++++|+..|+++++.... +...+..+..++...|++++|...+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777653221 44566666667777777777776666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-13 Score=129.99 Aligned_cols=212 Identities=13% Similarity=0.043 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005178 328 VVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407 (710)
Q Consensus 328 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 407 (710)
..|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 455666667777777777777777766553 335666777777777777777777777777665332 566777777888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 005178 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 487 (710)
...|++++|.++|+++.+.+..+.+...+..+...|...|++++|...|+++.+... .+...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888776222134566777888888888888888888888877543 2577788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
+.+|+++.+... .+...+..+..++...|+.++|.++++++.+..|++..+..++
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 888888876432 3566777788888888888888888888888888877665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=131.49 Aligned_cols=185 Identities=11% Similarity=-0.022 Sum_probs=157.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 359 TPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 359 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
+++...+..+...+.+.|++++|+..|++..+.... +...+..+..++.+.|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 456667888889999999999999999999987544 78889999999999999999999999999877 678889999
Q ss_pred HHHHHHhC-----------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 439 MLNIYGSG-----------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 439 li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
+..+|... |++++|+..|++.++.... +...|..+..+|...|++++|+..|+++++.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 9999999999999886433 67888899999999999999999999999876 5788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
.+..+|...|++++|+..|+++.+.+|++..+...++..+..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999998888776555555544333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-12 Score=125.04 Aligned_cols=229 Identities=12% Similarity=0.089 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666666552 244555556666666 666666666666666554 455566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 367 ALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTLLNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 66666666 677777777777666653 55666667777777 777777777777777643 4566667
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 439 MLNIYGS----GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 439 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777776 778888888888777753 45677777777877 888888888888887754 255677777
Q ss_pred HHHHh----cCChHHHHHHHHHHHHhCCcHHH
Q 005178 511 SVVSL----CETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 511 ~~~~~----~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+|.. .+++++|.+.|+++.+.+|+...
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77877 88888888888888888776544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-13 Score=126.49 Aligned_cols=214 Identities=10% Similarity=-0.059 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3455556666666666666666666665542 23455666666666666777777776666665432 255666677777
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 407 CADI-GLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 407 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
|... |++++|...++++.+.+..+.+...+..+..+|...|++++|...++++.+.... +...+..+..+|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 7777777777777662221233567777777777888888888888777765322 4677777788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L 543 (710)
+|+.+++++.+.....+...+..+...+...|+.+++..+++.+.+..|++..+...+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 8888888877643313556666777777788888888888888887888777665544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=133.41 Aligned_cols=215 Identities=12% Similarity=0.068 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|+..|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34456666666777777777777777776643 33566677777777777777777777777776533 26677777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
.|...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887765 56777888888888888888888888888877543 26778888888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+|+..|+++.+... .+..++..+..+|...|++++|.+.++++.+..|++..+...++..
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 99999988886532 2566888888899999999999999999999999888777666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-13 Score=140.35 Aligned_cols=246 Identities=10% Similarity=0.060 Sum_probs=188.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK-PGLARSLFDEMVESGLTPDEKTLTALI 369 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 369 (710)
+...|..+...+.+.|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35677888888888899999999999888754 3356788888888888886 899999988888764 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-CCC
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS-GGN 448 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 448 (710)
.+|...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++.+.. +.+...|+.+..+|.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888888876544 77888888888888888888888888888876 5678888888888888 555
Q ss_pred HHHH-----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---
Q 005178 449 VDNA-----IELFEEMSELGVAINVMGCTCLIQCLGKAR--RIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCE--- 517 (710)
Q Consensus 449 ~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g--- 517 (710)
.++| +..|+++++.... +...|..+...+.+.| ++++|++.++++ + ..| +...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 5666 4778887775433 5677888888888777 578888888776 3 333 4456677777777753
Q ss_pred ------ChHHHHHHHHHH-HHhCCcHHHHHHHHHh
Q 005178 518 ------TSEDVGKVITCL-QQANPKLVAFLNLIED 545 (710)
Q Consensus 518 ------~~~~a~~~~~~~-~~~~p~~~~~~~~L~~ 545 (710)
..++|.++|+++ .+++|....++..++.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 247788888888 7888877777666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=147.09 Aligned_cols=341 Identities=10% Similarity=0.023 Sum_probs=178.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 005178 231 CAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKV---EEVLSLYERGVASGWKPDPIAFSVLGKMFGESG- 306 (710)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g- 306 (710)
.+.+.|++++|+++|++..+.| +...+..|...|...|+. ++|+..|++..+. +...+..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4444555566666665555543 222333444444445555 5666666555532 3444444444333333
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 005178 307 ----DYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPG---LARSLFDEMVESGLTPDEKTLTALIKIYGKARW-- 377 (710)
Q Consensus 307 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 377 (710)
++++|...|++..+.|.. + .+..|...|...+..+ ++.+.+......| +...+..+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 555666666666654421 1 4444555555444322 2333344433333 22344445555555553
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC----CC
Q 005178 378 --AKDALELWERMRENKWPMDFILYNTLLNMCADIG---LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG----GN 448 (710)
Q Consensus 378 --~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~ 448 (710)
.+.+..+++..... +...+..|..+|...| +.++|++.|++..+.+ +++...+..|..+|... ++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCC
Confidence 33333333333322 2225666666666677 6777777777777766 46666656666666544 57
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChH
Q 005178 449 VDNAIELFEEMSELGVAINVMGCTCLIQC-L--GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-----TSE 520 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~ 520 (710)
+++|..+|++.. . -+...+..|... | ...|++++|+..|++..+.| +...+..|...|. .| +.+
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 777777777766 2 345555555555 3 35677777777777777665 4555666666665 44 777
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhcCCc---ccHHHHHHHHHHhccCCCChhhHHHHHHHHHh----CCCHHHHHHHH
Q 005178 521 DVGKVITCLQQANPKLVAFLNLIEDNSTGF---ENIKEEFRNVIKDTEVDARRPFCNCLIDICRN----RNLNERAHELL 593 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 593 (710)
+|.++|+++. |.+......||..+... ....++|..++++.....+...+..|+.+|.. ..+.++|...|
T Consensus 305 ~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 305 AAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 7777777666 66666666666554331 12455666666654444445566677777764 45888999999
Q ss_pred HHHHHcCC
Q 005178 594 YLGTLYGL 601 (710)
Q Consensus 594 ~~~~~~~~ 601 (710)
+++.+.|.
T Consensus 382 ~~A~~~g~ 389 (452)
T 3e4b_A 382 QLAKAQDT 389 (452)
T ss_dssp HHHHTTCC
T ss_pred HHHHHCCC
Confidence 98877663
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-13 Score=139.89 Aligned_cols=239 Identities=7% Similarity=0.064 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD-YDGIRYVLQEMKSLGVQPNLVVYNTLL 334 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 334 (710)
+...|..+..++.+.|++++|+..|++++... +-+..+|+.+..+|...|+ +++|+..|+++.+.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 46778889999999999999999999999864 4568899999999999997 999999999999864 33778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCH
Q 005178 335 EAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCAD-IGLV 413 (710)
Q Consensus 335 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 413 (710)
.++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999875 457889999999999999999999999999987655 78899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----
Q 005178 414 EEA-----ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---- 482 (710)
Q Consensus 414 ~~A-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 482 (710)
++| ++.|++..+.. +.+...|+.+...|...| ++++|+..+.++ +. ...+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 58899988876 678899999999999988 689999999888 43 2336788899999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHH
Q 005178 483 -----RIDDLVRVFGVS-IDRGVKPDDR 504 (710)
Q Consensus 483 -----~~~~A~~~~~~m-~~~~~~p~~~ 504 (710)
..++|+++|+++ .+ +.|...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~ 353 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRK 353 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhH
Confidence 358999999998 55 455443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-12 Score=124.06 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYN 331 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 331 (710)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555552 234455555555555 566666666666655543 455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005178 332 TLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTL 403 (710)
Q Consensus 332 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 403 (710)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55556655 666666666666665543 44555556666666 666666666666666553 44555556
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 404 LNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS----GGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 404 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 666665 666777777776666543 44566666666666 677777777777766643 255666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 005178 476 QCLGK----ARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 476 ~~~~~----~g~~~~A~~~~~~m~~~~ 498 (710)
..|.+ .+++++|+..|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777776643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-13 Score=130.48 Aligned_cols=234 Identities=11% Similarity=0.014 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQP--NLVVYNTLLEA 336 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~ 336 (710)
.+......+...|++++|+..|+++++.. +.+...+..+...|...|++++|+..+++..+.+..+ ...+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776653 2334466667777777777777777777776632111 12346677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEA 416 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 416 (710)
+...|++++|++.|++..+.. +.+...+..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777653 3345677777777788888888888887777653 22566666666344445588888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC-CCcC------HHHHHHHHHHHHhcCCHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN---VDNAIELFEEMSELG-VAIN------VMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~ 486 (710)
.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|.+.|++++
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888887765 4567777777888877777 777888887776531 1122 2567778888888888888
Q ss_pred HHHHHHHHHHC
Q 005178 487 LVRVFGVSIDR 497 (710)
Q Consensus 487 A~~~~~~m~~~ 497 (710)
|+..|+++++.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-12 Score=125.29 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
+..+...|...|++++|+..|+++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3333344444444444444444443321 2233344444444444444444444444443321 1133344444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (710)
.|++++|.++|+++.+.+..| +...+..+...|.+.|++++|...|+++.+.... +...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444311112 2233333444444444444444444444333211 33344444444444444444444
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.++++.+.. +.+...+..+...|...|++++|..+++++.+
T Consensus 197 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444332 23334444444444444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-12 Score=121.14 Aligned_cols=201 Identities=7% Similarity=-0.042 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555555555555555555555432 2234455555566666666666666666655442 2345555666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 372 YGKA-RWAKDALELWERMRENKWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 372 ~~~~-g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
|... |++++|...++++.+.+..| +...+..+..++...|++++|...|+++.+.. +.+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 6666 66666666666666522222 24556666666667777777777777666654 44566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
++|..+++++.+.....+...+..+...+...|+.++|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766643323555666666666777777777777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-13 Score=133.06 Aligned_cols=219 Identities=12% Similarity=0.036 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005178 271 GKVEEVLSLYERGVASGW---KPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347 (710)
Q Consensus 271 g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 347 (710)
|++++|+..|+++.+... +.+..++..+...|...|++++|...|+++.+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 444455555554444311 0123344444455555555555555555554432 123445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD 427 (710)
Q Consensus 348 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 427 (710)
..|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555554432 2234445555555555555555555555555432 222222223333344456666666665554443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 428 YCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+++...+. ++..+...++.++|...+.++.+..... +...|..+..+|.+.|++++|+..|++++.
T Consensus 175 --~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 --DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp --CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23333332 4444555555556666665554421110 134555556666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-10 Score=128.87 Aligned_cols=411 Identities=8% Similarity=-0.001 Sum_probs=274.0
Q ss_pred CCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCCHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL---FDEAIEWFERMYKTG-LMPDEVT 259 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~~~~~~ 259 (710)
+.|...|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.++ ++.+.++|++.+... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 567888888888888888888888888888876 34466777777777777777 888888888887763 1367778
Q ss_pred HHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 005178 260 YSAILDVYAKSGKV--------EEVLSLYERGVA-SGW-KP-DPIAFSVLGKMFGE---------SGDYDGIRYVLQEMK 319 (710)
Q Consensus 260 ~~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 319 (710)
|...+....+.++. +...++|+..+. .|. .+ +...|...+..... .++++.+..+|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 87777766665543 334467776554 344 34 35677777765432 345677788888877
Q ss_pred HCCCCCCHHHHHHH---HHHH----------HHcCCHHHHHHHHHHHHH--CCCC---------------C-----C---
Q 005178 320 SLGVQPNLVVYNTL---LEAM----------GKAGKPGLARSLFDEMVE--SGLT---------------P-----D--- 361 (710)
Q Consensus 320 ~~g~~p~~~~~~~l---i~~~----------~~~g~~~~A~~~~~~m~~--~g~~---------------p-----~--- 361 (710)
......-..+|... ...+ -...+++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211111233221 1111 011234445555655432 1211 1 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCCH
Q 005178 362 EKTLTALIKIYGKAR-------WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAE-RLFEDMKLSDYCKPDN 433 (710)
Q Consensus 362 ~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ 433 (710)
...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.++|. ++|++..... +.+.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~ 378 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCH
Confidence 134444544333322 134456788888876 3447888888888888999999996 9999998753 6778
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------CcC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGV---------AIN------------VMGCTCLIQCLGKARRIDDLVRVFG 492 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~A~~~~~ 492 (710)
..|..++....+.|+++.|..+|+++++... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888999999999999999999999986310 132 3468888888889999999999999
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhc-cCCCC
Q 005178 493 VSIDR-GVKPDDRLCGCLLSVVSLC-ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDT-EVDAR 569 (710)
Q Consensus 493 ~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~ 569 (710)
++++. +. .....|...+..-.+. ++.+.|.++|+...+..|+...++..++......+ ..+.|..+++.. ...++
T Consensus 459 ~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~-~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN-EESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCC
Confidence 99875 22 1234444433333444 44899999999999988888777655544333223 567888888763 33332
Q ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 570 ----RPFCNCLIDICRNRNLNERAHELLYLGTLYG 600 (710)
Q Consensus 570 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (710)
..+|..++..-.++|+.+.+.++.+++.+..
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999999987554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-13 Score=132.41 Aligned_cols=185 Identities=9% Similarity=-0.035 Sum_probs=90.5
Q ss_pred ccCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 199 FGRQFQLIEQLANEMVSNEIE---LDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEE 275 (710)
Q Consensus 199 ~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 275 (710)
..|++++|+..|+++.+.... .+...|..+..++...|++++|++.|+++.+.... +..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 345566666666666554211 12344555555566666666666666665554322 45555556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 276 VLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVE 355 (710)
Q Consensus 276 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 355 (710)
|+..|+++++.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666555532 2234555555555555555555555555555432 2222222233333444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 356 SGLTPDEKTLTALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 356 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
.. +++...+ .++..+...++.++|...+....
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh
Confidence 31 1222222 23333444444444444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-13 Score=127.74 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.+..+...|...|++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 333333333344444444444443333221 133334444444444444444444444444332 23344444444444
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
...|++++|...|+++.+... .+..+|..+..+|.+.|++++|+..|+++.+
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444444444444444444321 1344444444445555555555555554444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-12 Score=137.48 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=161.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--
Q 005178 162 NSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQF---QLIEQLANEMVSNEIELDNITYSTIITCAKRCN-- 236 (710)
Q Consensus 162 ~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-- 236 (710)
...+++++|+..|+.+...+ +...+..+..+|...|+. ++|+..|++..+. +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 34445666666666665442 222344455555555655 6666666666543 3333444444333333
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005178 237 ---LFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVE---EVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDG 310 (710)
Q Consensus 237 ---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 310 (710)
++++|+.+|++..+.|.. ..+..|...|...+..+ ++.+.+......| +...+..|...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 556666666666665432 24555555555544322 2333344333332 34455555566665553333
Q ss_pred ----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 005178 311 ----IRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG---KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA----RWAK 379 (710)
Q Consensus 311 ----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~ 379 (710)
+..+++.... .+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... ++++
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333333222 12225556666666666 6666666666666665 33444444455555443 4666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC-----CHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNM-C--ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG-----NVDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 451 (710)
+|+..|++.. .| +...+..|... | ...+++++|.+.|++..+.+ +...+..|..+|. .| ++++
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 6666666665 22 34444455544 2 34566666666666666533 4555566666655 33 6666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVG 523 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~ 523 (710)
|...|++.. . -+...+..|...|.. ..++++|+..|++..+.|. ...+..|..+|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 666666655 2 245555555555554 2366666666666665542 2233344444442 23556666
Q ss_pred HHHHHHHHhC
Q 005178 524 KVITCLQQAN 533 (710)
Q Consensus 524 ~~~~~~~~~~ 533 (710)
.+|+...+..
T Consensus 379 ~~~~~A~~~g 388 (452)
T 3e4b_A 379 VFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHCC
Confidence 6666555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=143.05 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CH
Q 005178 222 NITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKP-DP 292 (710)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~ 292 (710)
...+......+...|++++|+..|+++.+.+.. + ..++..+...|...|++++|...|+++... +-.+ ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334444444555556666666666555554221 2 234455555555555555555555554321 1000 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 293 IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
.++..+...|...|++++|...+++..+... ..+. .....++..+...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHH
Confidence 2344444444444444444444444433200 0000 0002244455555
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 372 YGKARW--------------------AKDALELWERMREN----KWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 372 ~~~~g~--------------------~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
|...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 66666665554321 1111 1345667777777888888888887776543
Q ss_pred CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 427 DYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 427 ~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..-.++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..|++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 110122 236778888888888888888888887652111 11 457778888888899999998888887642
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 498 GV-KPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 498 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
.. ..+ ..++..+..+|...|++++|.+.++++.++
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 111 346777888888899999999888887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=141.58 Aligned_cols=281 Identities=14% Similarity=0.090 Sum_probs=170.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHH
Q 005178 225 YSTIITCAKRCNLFDEAIEWFERMYKTGLMPDE----VTYSAILDVYAKSGKVEEVLSLYERGVAS----G-WKPDPIAF 295 (710)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~ 295 (710)
+..+...+...|++++|+..|+++.+.+.. +. ..+..+...|...|++++|+..|+++++. + .+....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444666677777777777776665322 22 35666666666677777777766665532 1 01123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 005178 296 SVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGK 374 (710)
Q Consensus 296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~ 374 (710)
..+...|...|++++|...+++..+... ..+- .....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHH
Confidence 5555555566666666665555543100 0000 0012234444444444
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 005178 375 ARW-----------------AKDALELWERMREN----KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432 (710)
Q Consensus 375 ~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 432 (710)
.|+ +++|++.+++..+. +. ......+..+...|...|++++|++.+++..+......+
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 455 55555554443321 10 112345666777777888888888887776553210112
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 005178 433 ----NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-----INVMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GV 499 (710)
Q Consensus 433 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 499 (710)
..++..+...|...|++++|...++++.+.... ....++..+...|...|++++|+..|++.++. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 237788888899999999999999887763111 12567888888999999999999999988742 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 500 KP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 500 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.+ ...++..+..+|...|++++|.++++++.++.+...
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 11 133777888899999999999999999988766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=137.86 Aligned_cols=305 Identities=15% Similarity=0.063 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Q 005178 183 FPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAIEWFERMYKT----GLM 254 (710)
Q Consensus 183 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~ 254 (710)
.......+......+...|++++|...|+++.+.... + ...|..+..++...|++++|...|++..+. +..
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 3556777888889999999999999999999986322 3 357788888999999999999999987653 211
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------H
Q 005178 255 P-DEVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGD--------------------Y 308 (710)
Q Consensus 255 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~ 308 (710)
+ ...++..+...|...|++++|+..+++..+..- ..+ ..++..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 255788899999999999999999999886420 011 3356666777777777 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTP-DEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
++|...+++..+.. . ..+..+ ...++..+...|...|++++|...+++
T Consensus 164 ~~A~~~~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHHH----------------------------H---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------------------------H---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66666665554310 0 000000 112344444445555555555555544
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005178 388 MRENKW-PMD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEE 458 (710)
Q Consensus 388 m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 458 (710)
..+... .++ ..++..+...|...|++++|...+++..+......+ ..++..+...|...|++++|...+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 432100 001 235666666777777777777777766542100111 45677788888888888888888888
Q ss_pred HHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCh
Q 005178 459 MSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCGCLLSVVSLCETS 519 (710)
Q Consensus 459 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~ 519 (710)
+.+.... .+ ..++..+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|+.
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7653111 11 557778888888899999999988887642 21111 23455566666666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-11 Score=124.47 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFG-------ESGDY-------DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK 339 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 339 (710)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555555555432 334555555555543 23554 6677777776652112244566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 005178 340 AGKPGLARSLFDEMVESGLTPD-EK-TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA-DIGLVEEA 416 (710)
Q Consensus 340 ~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A 416 (710)
.|++++|.++|+++++. .|+ .. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777654 332 22 667777777777777777777777776533 23444443333322 25888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 417 ERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VAI--NVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
..+|++..+.. +.+...|..++..+.+.|++++|..+|+++.+.. +.| ....|..++..+.+.|+.++|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887764 5577888888888888888888888888888752 343 466788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 494 SIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 494 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+.+.. |+......+ ..+.. ...+.+..|++...++.||+.
T Consensus 267 a~~~~--p~~~~~~~~-~~~~~----------r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 267 RFTAF--REEYEGKET-ALLVD----------RYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHT--TTTTSSCHH-HHHHT----------TTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHc--ccccccchH-HHHHH----------HHHhcccCCCCHHHHHhcCCC
Confidence 87632 321100000 00000 002345678888888887763
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=136.56 Aligned_cols=280 Identities=13% Similarity=0.062 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN----ITYSTIITCAKRCNLFDEAIEWFERMYKT----GL-MPD 256 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~ 256 (710)
....+..+...+...|++++|+..|+++++.... +. ..|..+..+|...|++++|++.|++..+. +. ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4455667778899999999999999999986422 33 47888888999999999999999988764 11 123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVASG-----WKPDPIAFSVLGKMFGESGD-----------------YDGIRYV 314 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 314 (710)
..++..+...|...|++++|+..|+++.+.. ......++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999887531 01123456666677777777 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 315 LQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 315 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
+++..+. +... +. .....++..+...|...|++++|+..|++..+...
T Consensus 206 ~~~al~~----------------------------~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDL---GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHc---CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5554331 0000 00 00112344444555555555555555555443210
Q ss_pred C-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 005178 394 P-MD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK----PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV 464 (710)
Q Consensus 394 ~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 464 (710)
. .+ ...+..+...|...|++++|.+.|++......-. ....++..+...|...|++++|...+++..+...
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0 01 2356667777777788888877777665432100 1246777888888899999999999888765311
Q ss_pred -----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 465 -----AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 465 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.....++..+...|.+.|++++|...|++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112457788888999999999999999988763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-11 Score=114.47 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAML 440 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 440 (710)
+...|..+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 4556666777777777777777777776665433 56666777777777777777777777776655 45666677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005178 441 NIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 520 (710)
..+...++++.|...+.+..+.... +...+..+..+|.+.|++++|+..|++.++.... +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 7777777777777777777664332 5666777777777777777777777777764322 4556777777777778888
Q ss_pred HHHHHHHHHHHhCCcHH
Q 005178 521 DVGKVITCLQQANPKLV 537 (710)
Q Consensus 521 ~a~~~~~~~~~~~p~~~ 537 (710)
+|.+.|+++.+++|++.
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 88888877777777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=129.77 Aligned_cols=231 Identities=7% Similarity=-0.042 Sum_probs=165.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMREN----KWPM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DNYSYT 437 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 437 (710)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+.+..+...-.+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877653 1111 235677777888888888888888877665311011 245778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKP-DDRLCG 507 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~ 507 (710)
.+...|...|++++|...|++..+.... .+ ..++..+..+|...|++++|+..|++.++. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888889999999999988887753111 11 247888888999999999999999888762 2213 345788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh-----CCcHHHHHHHHHhhcCCccc--HHHHHHHHHHhccCCCChh-hHHHHHHH
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIEDNSTGFEN--IKEEFRNVIKDTEVDARRP-FCNCLIDI 579 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~L~~~~~~~~~--~~~~a~~~~~~~~~~~~~~-~~~~l~~~ 579 (710)
.+..+|...|++++|.+.++++.++ +|.....+..|+..+...++ ..++|..++++....++.. ++..|+.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888999999999999999988765 34444445667777666552 3677778887775444433 67889999
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 005178 580 CRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~~ 598 (710)
|...|++++|.+.++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-11 Score=119.49 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK-------AGKP-------GLARSLFDEMVESGLTPDEKTLTALIKIYGK 374 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 374 (710)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998753 4477788888887763 5886 9999999999973123456789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hCCCHHHH
Q 005178 375 ARWAKDALELWERMRENKWPMDFI-LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG-SGGNVDNA 452 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A 452 (710)
.|++++|..+|++..+.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999985332 333 89999999999999999999999999876 456666665554433 37999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKP--DDRLCGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
..+|+++++.... +...|..++..+.+.|++++|+.+|++.+... +.| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999885432 68899999999999999999999999999863 454 4668889999999999999999999999
Q ss_pred HHhCCcHH
Q 005178 530 QQANPKLV 537 (710)
Q Consensus 530 ~~~~p~~~ 537 (710)
.+..|+..
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 99999743
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-12 Score=130.20 Aligned_cols=280 Identities=15% Similarity=0.107 Sum_probs=148.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHH
Q 005178 227 TIITCAKRCNLFDEAIEWFERMYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWK-PDPIAFSV 297 (710)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~ 297 (710)
.....+...|++++|+..|+++.+.... + ...+..+...|...|++++|+..+++.... +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344566666667776666666665322 2 245556666666666666666666655432 100 11334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHCCCC
Q 005178 298 LGKMFGESGDYDGIRYVLQEMKSLGV-QPN----LVVYNTLLEAMGKAGK-------------PGLARSLFDEMVESGLT 359 (710)
Q Consensus 298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~~g~~ 359 (710)
+...|...|++++|...+++..+... ..+ ..++..+...+...|+ .+++.+.
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------- 158 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA---------- 158 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH----------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH----------
Confidence 55555555555555555555443100 011 1134444444444444 0000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMREN----KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-- 432 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 432 (710)
+++|...+++..+. +. ......+..+...|...|++++|.+.+++..+.....++
T Consensus 159 ------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 159 ------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 44444444443221 00 001234555666666677777777666665432100011
Q ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 005178 433 --NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKP 501 (710)
Q Consensus 433 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p 501 (710)
..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..++++.+. +-.+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 236667777777777777777777776542110 11 456677777777888888888887777642 1111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 502 -DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 502 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
...++..+..+|...|++++|.+.++++.++.+.
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1235667777888888888888888877766543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-12 Score=127.91 Aligned_cols=280 Identities=15% Similarity=0.077 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCH
Q 005178 187 TIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAIEWFERMYKT----GLM-PDE 257 (710)
Q Consensus 187 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 257 (710)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|++.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677889999999999999999986322 3 367778888999999999999999987653 211 125
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 005178 258 VTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGD--------------------YDGIR 312 (710)
Q Consensus 258 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 312 (710)
.++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 6788899999999999999999998865310 122 3477888889999999 78888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 005178 313 YVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN- 391 (710)
Q Consensus 313 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 391 (710)
..+++..... ...++. ......+..+...|...|++++|...+++..+.
T Consensus 164 ~~~~~a~~~~---------------~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLSLV---------------TALGDR---------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHHHH---------------HHHTCH---------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HhcCCH---------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7777654310 000000 000123333444444445555555444444321
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 392 ---KW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 392 ---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
+. .....++..+...|...|++++|...+++..+......+ ..++..+...|...|++++|...++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00 001235666777777888888888887776543210111 5577788888899999999999988876531
Q ss_pred ----C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 464 ----V-AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 464 ----~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
. .....++..+...|.+.|++++|...++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 111447778888999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-11 Score=110.06 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+..+|..+...|.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34455556666666666666666666655542 234555555666666666666666666665554322 4555555556
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
.+...++++.|.+.+.+..... +.+...+..+..+|...|++++|+..|++..+.... +..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 6666666666666666666554 455666666666666666666666666666664322 4556666666666667777
Q ss_pred HHHHHHHHHHH
Q 005178 486 DLVRVFGVSID 496 (710)
Q Consensus 486 ~A~~~~~~m~~ 496 (710)
+|+..|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77776666665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=128.79 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=113.5
Q ss_pred HccCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHH--HHHHcCCHHHHH-----------HHHHHHHHcCCCCC----
Q 005178 198 RFGRQFQLIEQLANEMVSN--EIELDN--ITYSTIIT--CAKRCNLFDEAI-----------EWFERMYKTGLMPD---- 256 (710)
Q Consensus 198 ~~~g~~~~A~~l~~~m~~~--g~~p~~--~~~~~li~--~~~~~g~~~~A~-----------~~~~~m~~~g~~~~---- 256 (710)
.+.+++++|..+++++.+. .+..|. ..|-.++. .....+.++.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5678888888888887653 222233 33333333 112223333444 55555543210000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVAS----GWKP-DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QP----- 325 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----- 325 (710)
...+......+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|...+++..+.-. .+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 011222455566777777777777777653 1011 234566677777777777777777766654200 01
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CC
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPD----EKTLTALIKIYGKARWAKDALELWERMREN----KW-PM 395 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~ 395 (710)
...+++.+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|+..|++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 123555566666666666666666665543200 011 124444555555555555555555554431 11 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
...++..+...|...|++++|.+.+++..
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23344444444555555555555444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-09 Score=115.52 Aligned_cols=410 Identities=12% Similarity=0.102 Sum_probs=229.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ---FQLIEQLANEMVSNE-IELDNITYSTIITCAKRCNLF-- 238 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~-- 238 (710)
..++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+|++.+... ..|+...|...+....+.++.
T Consensus 80 ~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTT
T ss_pred CcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccc
Confidence 4577777888887776 56677778888888777777 888888888887653 136777777777655554443
Q ss_pred ------HHHHHHHHHHHHc-CC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 239 ------DEAIEWFERMYKT-GL-MP-DEVTYSAILDVYA---------KSGKVEEVLSLYERGVASGWKPDPIAFSVLGK 300 (710)
Q Consensus 239 ------~~A~~~~~~m~~~-g~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 300 (710)
+...++|+..+.. |. .+ +...|...+.... ..++++.+..+|++++......-..+|.....
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344677766553 55 44 3467777776543 23446777788888775311111223322111
Q ss_pred HHHh-------------cCCHHHHHHHHHHHHH--CCCC---------------C-----C---HHHHHHHHHHHHHcC-
Q 005178 301 MFGE-------------SGDYDGIRYVLQEMKS--LGVQ---------------P-----N---LVVYNTLLEAMGKAG- 341 (710)
Q Consensus 301 ~~~~-------------~g~~~~A~~~~~~m~~--~g~~---------------p-----~---~~~~~~li~~~~~~g- 341 (710)
.-.. ..+++.|..++.++.. .++. | + ...|...+.---..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 1100 1233444555544322 1111 0 0 123444443322221
Q ss_pred ------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 005178 342 ------KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL-ELWERMRENKWPMDFILYNTLLNMCADIGLVE 414 (710)
Q Consensus 342 ------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 414 (710)
..+.+..+|++.+.. ++-+...|...+..+...|+.++|. ++|++.... ++.+...|...+......|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 123455667776654 2345666766677677777777775 777777654 3445666666777777777777
Q ss_pred HHHHHHHHHHhCC---------CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005178 415 EAERLFEDMKLSD---------YCKP------------DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTC 473 (710)
Q Consensus 415 ~A~~~~~~~~~~~---------~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 473 (710)
.|.++|+.+.... . .| ....|...+....+.|+.+.|..+|.++++.-.......|..
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~ 474 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 7777777766521 0 13 123577777777777777777777777776411112334433
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc---HHHHHHHHHhhcCC
Q 005178 474 LIQCLGKAR-RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK---LVAFLNLIEDNSTG 549 (710)
Q Consensus 474 li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~ 549 (710)
.+..-.+.| +.+.|.++|+..++. ..-+...|...+......|+.+.|..+|+.+....|+ ...++..+......
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 333333433 477777777777754 2224555666666666777777777777777776662 33444444433333
Q ss_pred cccHHHHHHHHHHhc-cCCCChhhHHHHHHHHH
Q 005178 550 FENIKEEFRNVIKDT-EVDARRPFCNCLIDICR 581 (710)
Q Consensus 550 ~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~ 581 (710)
.| ..+.+..+.+++ ...|+..-...+.+-|.
T Consensus 554 ~G-~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 554 VG-SLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp TC-CSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred cC-CHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 34 334455555443 22344344444444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=130.80 Aligned_cols=250 Identities=15% Similarity=0.121 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 257 EVTYSAILDVYAKSGKVEEVLSLYERGVAS-------GWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVV 329 (710)
Q Consensus 257 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 329 (710)
..++..+...|...|++++|+.+|+++.+. ..+....++..+...|...|++++|...+++..+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 344555555555566666666666555441 111223344455555555555555555555544320
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KW-PMDFILYNT 402 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~ 402 (710)
..............+..+...|...|++++|...|+++.+. +. ......+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000000111233444444555555555555555544432 11 112334555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCc---
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-------GVAI--- 466 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p--- 466 (710)
+...|...|++++|.++|+++.+. +..+....++..+...|...|++++|...++++.+. ...+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 566666666666666666665543 110222345666667777777777777777766642 0111
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 467 ----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 467 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
....+..+...+...+.+.+|...++...... ..+..++..+..+|.+.|++++|.++|+++.++.|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11223333344455666666667776665421 113447778888888899999999988888776653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-11 Score=130.79 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDY-DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
++++..+++..... +.+...+..+...|...|++ ++|+..|++..+.. +-+..+|..+..+|.+.|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433321 23445555555555555555 55555555555432 12344555555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 005178 353 MVESGLTPDEKTLTALIKIYGKA---------RWAKDALELWERMRENKWPMDFILYNTLLNMCADI--------GLVEE 415 (710)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 415 (710)
..+. .|+...+..+...|... |++++|+..|++..+.... +...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 5543 24444455555555554 5555555555555544222 344555555555554 55555
Q ss_pred HHHHHHHHHhCCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCK---PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVF 491 (710)
Q Consensus 416 A~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 491 (710)
|++.|++..+.. + .+...|..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|+..+
T Consensus 240 A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555433 2 34555555555555555555555555555543221 3444555555555555555555433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-10 Score=121.04 Aligned_cols=229 Identities=7% Similarity=-0.080 Sum_probs=153.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKW-PMD----FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DNYSYT 437 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~ 437 (710)
....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+..+...-.+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777765311 012 34566677777778888888777777654311011 245677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSEL----GVA-INVMGCTCLIQCLGKARRIDDLVRVFGVSID-----RGVKPDDRLCG 507 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 507 (710)
.+..+|...|++++|...|++..+. +-. ....++..+..+|...|++++|+..|++.++ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7788888888888888888777652 111 1234677778888888888888888888775 3322 255677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh-----CCcHHHHHHHHHhhcCCcc--cHHHHHHHHHHhccCCCChh-hHHHHHHH
Q 005178 508 CLLSVVSLCETSEDVGKVITCLQQA-----NPKLVAFLNLIEDNSTGFE--NIKEEFRNVIKDTEVDARRP-FCNCLIDI 579 (710)
Q Consensus 508 ~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~L~~~~~~~~--~~~~~a~~~~~~~~~~~~~~-~~~~l~~~ 579 (710)
.+..+|.+.|++++|..+++++.++ +|.....+..|+..+...+ ...+++..++++....++.. .+..++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 7888888888888888888888775 4445555566665554433 23666777777654433332 67789999
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 005178 580 CRNRNLNERAHELLYLGT 597 (710)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~ 597 (710)
|...|++++|.+.|+++.
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 999999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-12 Score=126.54 Aligned_cols=169 Identities=16% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVES-------GLTPDEKTLTALIKIYGKARWAKDALELWERMREN------KW 393 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~ 393 (710)
..++..+...+...|++++|..+|+++.+. ........+..+...|...|++++|...|++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666666666666666666542 11122344555555566666666666666555432 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 005178 394 -PMDFILYNTLLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL---- 462 (710)
Q Consensus 394 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 462 (710)
......+..+...|...|++++|.+.|+++.+. +..+.....+..+...|...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112334444455555555555555555544432 100112233444444444555555555555444432
Q ss_pred --CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 463 --GVAI-NVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 463 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+..| ...++..+..+|...|++++|+..|+++.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1011 12234444444444444444444444444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-11 Score=128.93 Aligned_cols=182 Identities=10% Similarity=-0.040 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 005178 361 DEKTLTALIKIYGKARWA-KDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAM 439 (710)
Q Consensus 361 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 439 (710)
+...+..+...|...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|++..+.. |+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHH
Confidence 444455555555555555 5555555555544222 34555555555555666666666665555543 345555555
Q ss_pred HHHHHhC---------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--
Q 005178 440 LNIYGSG---------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA--------RRIDDLVRVFGVSIDRGVK-- 500 (710)
Q Consensus 440 i~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~-- 500 (710)
...|... |++++|+..|+++.+.... +...|..+..+|... |++++|+..|++.++....
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 5556555 6666666666666554322 455566666666655 6666666666666653210
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 501 PDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 501 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
-+...|..+..+|...|++++|.+.|+++.+++|++......++.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 14556666666666666666666666666666666655555554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-10 Score=109.24 Aligned_cols=209 Identities=9% Similarity=-0.018 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005178 325 PNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLL 404 (710)
Q Consensus 325 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 404 (710)
.|...+..+...+...|++++|+..|++.++....++...+..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999988753367777777899999999999999999999886443 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---HHHHHHH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDN-------YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---VMGCTCL 474 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 474 (710)
.+|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|+..|+++++. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999998876 4556 56888888899999999999999999874 454 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 475 IQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
..+|...| ..+++++...+. .+...|.... ....+.+++|...++++.+++|++..+...|+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77776554 344555544322 2334444333 2345668999999999999999998887777653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-10 Score=117.10 Aligned_cols=312 Identities=10% Similarity=-0.019 Sum_probs=143.7
Q ss_pred CcHHHHHHHHHHH--HccCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH--HHHcCCHHHHH---------HHHHH
Q 005178 185 METIFYNVTMKSL--RFGRQFQLIEQLANEMVSN--EIELD--NITYSTIITC--AKRCNLFDEAI---------EWFER 247 (710)
Q Consensus 185 ~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g~~p~--~~~~~~li~~--~~~~g~~~~A~---------~~~~~ 247 (710)
|+..+-+.+-..| .+.+++++|..+++++... .+..| ...|-.++.. ..-.+.+..+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555556666666 6788888888888887552 22223 2333333331 11111222222 44444
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 248 MYKTGLMPD----EVTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 248 m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
+.......+ ...+......+...|++++|+..|++..+.-- .++ ..++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 432110001 01122333445566777777777766654310 011 345555666666666666666666655
Q ss_pred HHCC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 319 KSLG--V---QP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGL-TPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 319 ~~~g--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
.+.. . .+ ...+++.+..+|...|++++|.+.|++..+..- ..+.
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------- 218 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND----------------------------- 218 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-----------------------------
Confidence 4310 0 00 123455555555666666666665555443100 0010
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Q 005178 392 KWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL-----SDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGV-- 464 (710)
Q Consensus 392 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 464 (710)
.....++..+..+|...|++++|++.|++..+ .. +....++..+...|.+.|++++|...+++..+...
T Consensus 219 --~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 219 --RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 00112344444444444555555444444443 22 22244455555555555555555555555544211
Q ss_pred --CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 465 --AINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 465 --~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
......+..+...|...|+ +++|+.++++ .+..|+ ...+..+...|...|++++|.+.|+++.++
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112233344444444555 4455555443 111122 124445555666666666666666655443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-09 Score=110.90 Aligned_cols=264 Identities=13% Similarity=-0.016 Sum_probs=123.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHH
Q 005178 232 AKRCNLFDEAIEWFERMYKTGLMPDE----VTYSAILDVYAKSGKVEEVLSLYERGVASGW-KPD----PIAFSVLGKMF 302 (710)
Q Consensus 232 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~ 302 (710)
+...|++++|...+++........+. .+++.+...|...|++++|...+++.....- ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 33445555555555444443211111 1334444445555555555555555433100 001 12234445555
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHH
Q 005178 303 GESGDYDGIRYVLQEMKSL----GVQ--P-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT----PDEKTLTALIKI 371 (710)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~ 371 (710)
...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 5566666666655555431 111 1 1224444555566666666666666665542111 012345555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPM--DFILYN----TLLNMCADIGLVEEAERLFEDMKLSDYCK--PDNYSYTAMLNIY 443 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~ 443 (710)
+...|++++|...+++.......+ ...... ..+..+...|++++|...+++........ .....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 666666666666666654321111 111111 12233556666666666666655432100 0122345555666
Q ss_pred HhCCCHHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSEL----GVAINV-MGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
...|++++|...++++... |..++. ..+..+..++...|+.++|...+++..
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666666666665431 111111 244444555556666666666665554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-09 Score=111.89 Aligned_cols=274 Identities=11% Similarity=-0.035 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHH
Q 005178 260 YSAILDVYAKSGKVEEVLSLYERGVASGWKPDP----IAFSVLGKMFGESGDYDGIRYVLQEMKSLGV-QPNL----VVY 330 (710)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~ 330 (710)
.......+...|++++|...+++.....-..+. .+++.+...|...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455677899999999999998875422222 2566777888999999999999998765210 1122 346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVES----GLT--PD-EKTLTALIKIYGKARWAKDALELWERMRENKWP----MDFIL 399 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~ 399 (710)
..+...+...|++++|...+++..+. +.. |. ...+..+...|...|++++|...+++..+.... .....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67888899999999999999988653 222 22 345667888899999999999999998764322 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC-HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-NYSYT----AMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMGC 471 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 471 (710)
+..+...+...|++++|...+++.........+ ..... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888999999999999999988754210111 22111 23445789999999999999887643221 13356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDR----GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQAN 533 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 533 (710)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++.+..+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77888999999999999999988642 222222 256667788889999999999998886553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-10 Score=104.00 Aligned_cols=166 Identities=15% Similarity=0.065 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 33444445555555555555555544322 244555555555555566666666555555543 345555555666666
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
..|++++|...++++.+... .+...+..+...|...|++++|+..++++.+... .+...+..+..+|...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555422 2455555566666666666666666666654321 234556666666666666666666
Q ss_pred HHHHHHHhCCc
Q 005178 525 VITCLQQANPK 535 (710)
Q Consensus 525 ~~~~~~~~~p~ 535 (710)
.++.+.+..|+
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 66666555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.2e-10 Score=126.88 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
.|+.|..+|.+.|++++|++.|++.++.... +...|+.+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3444444444444444444444444443221 34444444444444455555555554444443 33444455555555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 523 (710)
...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555554443221 3444555555555555555555555555442211 2334444555555555555555
Q ss_pred HHHHHHHHh
Q 005178 524 KVITCLQQA 532 (710)
Q Consensus 524 ~~~~~~~~~ 532 (710)
+.++++.++
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=100.52 Aligned_cols=163 Identities=15% Similarity=0.058 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
.|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555555556666655555554432 23445555555566666666666666666555422 24555666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|..+++++.+... .+...+..+...|...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666554 45566666666666666666666666666665432 24566666666666777777777
Q ss_pred HHHHHHHH
Q 005178 489 RVFGVSID 496 (710)
Q Consensus 489 ~~~~~m~~ 496 (710)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-09 Score=101.76 Aligned_cols=193 Identities=7% Similarity=-0.091 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
|...+......+...|++++|++.|++..+... +++...+..+..+|...|++++|+..|++..+.... +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 455666666667777777777777777766551 256666666777777777777777777777764322 455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc--HHHHHHHHHhh
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDD-------RLCGCLLSVVSLCETSEDVGKVITCLQQANPK--LVAFLNLIEDN 546 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~L~~~ 546 (710)
.+|...|++++|+..|++.++.... +. ..|..+...+...|++++|++.|+++.+.+|+ ...++..+|.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 7777777777777777777653221 23 34666777778888888888888888888888 77777777776
Q ss_pred cCCcccHHHHHHHHHHhc-cC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 547 STGFENIKEEFRNVIKDT-EV-DARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+...| ..+++++ .. ..+...|..+ .....|.+++|...|+++++.
T Consensus 163 ~~~~~------~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNG------ADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH------HHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 54333 2222221 11 1122233332 234556788999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-10 Score=123.34 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
+|+.|...|.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++.++.... +...|..+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44445555555555555555555544432 223444555555555555555555555555443222 3445555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLV 488 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 488 (710)
..|++++|++.|++..+.. +.+...|+.+..+|...|++++|+..|+++++.... +...|..+..+|...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555544 344555555555555555555555555555553221 3455555555555555555555
Q ss_pred HHHHHHH
Q 005178 489 RVFGVSI 495 (710)
Q Consensus 489 ~~~~~m~ 495 (710)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-10 Score=111.26 Aligned_cols=200 Identities=15% Similarity=0.095 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC--C
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLS------DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL-----GV--A 465 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~--~ 465 (710)
++..+...|...|++++|+..++++.+. +..+....++..+...|...|++++|...|+++.+. +. .
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444332 100122334555555555555555555555554432 00 1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC-----
Q 005178 466 INVMGCTCLIQCLGKARRIDDLVRVFGVSIDR------GVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQAN----- 533 (710)
Q Consensus 466 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 533 (710)
....++..+...|...|++++|+.+|+++++. +-.|+ ..++..+..+|...|++++|..+++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12344555555555555555555555555532 11121 2345555556666666666666665554431
Q ss_pred ----CcHHHHHHHHHhh-----cCCcccHHHHHHHHHHhccCC-CCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 534 ----PKLVAFLNLIEDN-----STGFENIKEEFRNVIKDTEVD-ARR-PFCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 534 ----p~~~~~~~~L~~~-----~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
+.....+..++.. .........++..+++..... |+. .++..++.+|...|++++|.++|+++++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111121111111 011122334444444444322 222 2788899999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-09 Score=109.43 Aligned_cols=175 Identities=11% Similarity=0.000 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCC----H
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPM-D----FILYNTLLNMCADI-GLVEEAERLFEDMKLSDYCKPD----N 433 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~ 433 (710)
+|+.+..+|.+.|++++|+..|++..+..... + ..+++.+..+|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 44445555555555555555555444321000 1 23566677777775 8888888777776653210011 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINV------MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR--- 504 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 504 (710)
.++..+...|...|++++|+..|+++.+....... ..|..+..++...|++++|+..|++.++ +.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C--------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcH
Confidence 46777788888888888888888888775433221 1566677778888888888888887764 233211
Q ss_pred ---HHHHHHHHHH--hcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 505 ---LCGCLLSVVS--LCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 505 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.+..++.+|. ..+++++|++.|+++..++|....++
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 2344555554 35567777777777777777664443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-10 Score=109.94 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSL------GVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMVES------GL 358 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 358 (710)
..++..+...|...|++++|...++++.+. +-.| ...++..+...|...|++++|...|+++.+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666666666666666665542 1111 2234555555555555555555555555432 00
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 359 -TPDEKTLTALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 359 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
+....++..+...|...|++++|...|++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112334444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-08 Score=98.44 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=134.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 346 ARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW-PMDFILYNTLLNMCADIGLVEEAERLFEDMK 424 (710)
Q Consensus 346 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 424 (710)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.++.+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 45566666778888888888888888888876654 2256677778888888999999999998887
Q ss_pred hCCCCCC-----CHHHHHHHHHH--HHh--CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 425 LSDYCKP-----DNYSYTAMLNI--YGS--GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 425 ~~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+. .| +..+...|+.+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 35 24555555555 222 33888999999998764 3443343444457888999999999988765
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 496 DR-----GV---KP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 496 ~~-----~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+. +. .| |..+...++......|+ +|.++++++.+..|+++.+.++-.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 42 00 23 44466566666666776 888999999999999887765543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-08 Score=98.88 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=165.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----HhC--
Q 005178 375 ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG--LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY----GSG-- 446 (710)
Q Consensus 375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 446 (710)
....++|+++++.++..+.. +...|+.--..+...| ++++++++++.+...+ +.+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccc
Confidence 33446788888888776444 5666777667777777 8888888888888776 56666776555555 445
Q ss_pred -CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 005178 447 -GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID--DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET----- 518 (710)
Q Consensus 447 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----- 518 (710)
+++++++.+++.+.+...+ |..+|+.-...+.+.|.++ +++++++++++.+.. |...|+.-..++.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 7888999999999886654 8888888888888888888 999999999886655 67778777777777776
Q ss_pred -hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhcc-CC---C-ChhhHHHHHHHHHhCCCHHHHHHH
Q 005178 519 -SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE-VD---A-RRPFCNCLIDICRNRNLNERAHEL 592 (710)
Q Consensus 519 -~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~A~~~ 592 (710)
++++.+++..+...+|++..++..++..+...|...+++.++..++- .. + ....+..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88999999999999999999887776655444544555666666532 21 3 344788999999999999999999
Q ss_pred HHHHHH
Q 005178 593 LYLGTL 598 (710)
Q Consensus 593 ~~~~~~ 598 (710)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3.1e-08 Score=97.25 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=165.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 005178 300 KMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAK 379 (710)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 379 (710)
+-..-.|.+..++.-...+.. ......-..+..+|...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 444557888777773332211 11223333455777777776532 112344434443333 33322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
|+..|++..+.+ .++...+..+..++...|++++|++++.+....+...-+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888887765 446666678889999999999999999998776521146788899999999999999999999999
Q ss_pred HHcCCCc-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005178 460 SELGVAI-----NVMGCTCLIQC--LGKAR--RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ 530 (710)
Q Consensus 460 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 530 (710)
.+. .| +..+...|+.+ ....| ++.+|+.+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 884 45 35566666666 33334 899999999998764 3553333445558999999999999999877
Q ss_pred Hh----------CCcHHHHH-HHHHhhcCCcccHHHHHHHHHHhc-cCCCChhh
Q 005178 531 QA----------NPKLVAFL-NLIEDNSTGFENIKEEFRNVIKDT-EVDARRPF 572 (710)
Q Consensus 531 ~~----------~p~~~~~~-~~L~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~ 572 (710)
+. +|++..++ +++...+. .|+ ++.+++.++ ...|+.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk---~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALM-QGL---DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC---TTHHHHHHHHHTTCCCHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHH-hCh---HHHHHHHHHHHhCCCChH
Confidence 65 58888877 55322222 232 667777765 45676653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=86.71 Aligned_cols=132 Identities=15% Similarity=0.117 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+. .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 4445555555566666666665555543 34455555555556666666666666666555432 23455555566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..|++++|+.+++++..... .+...+..+..++...|++++|...++++.+.+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666554321 13445555666666666666666666666555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-07 Score=98.29 Aligned_cols=358 Identities=9% Similarity=-0.023 Sum_probs=202.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHH----HcCCH
Q 005178 201 RQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNL-FDEAIEWFERMYKT-GLMP-DEVTYSAILDVYA----KSGKV 273 (710)
Q Consensus 201 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~~-~~~~~~~li~~~~----~~g~~ 273 (710)
|+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..+.. |..+ +...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999998875 4788899888887766663 45667788877765 5433 6778888777654 34678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 274 EEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEM 353 (710)
Q Consensus 274 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 353 (710)
+.+.++|++.+......-...|......-.. .....+..++.+.. +.+..|..+++++
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL---------------------PIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh---------------------HHHHHHHHHHHHH
Confidence 8888999998873111111222222211111 11122222222111 1233334444333
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 005178 354 VESGLTPDEKTLTALIKIYGKAR-------WAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426 (710)
Q Consensus 354 ~~~g~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 426 (710)
...--..+...|...+..-...+ ..+.+..+|+++.... +.+...|...+.-+...|+.+.|..+|++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100012334444443322211 0334566777776642 335667777777777777888888888877765
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------C---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 427 DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG---------V---AINVMGCTCLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 494 (710)
+.+...|.. |......++. ++.+.+.- . ......|...+..+.+.|..+.|..+|+++
T Consensus 243 ---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 243 ---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp ---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 233322322 2211111111 22222110 0 011345777777777788899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhH
Q 005178 495 IDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFC 573 (710)
Q Consensus 495 ~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 573 (710)
.. ...+..+|......-...+ +.+.|..+|+.+.+..|+...++..++......| ..+.|..+++... ....+|
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~-~~~~aR~l~er~~--k~~~lw 387 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG-DEENARALFKRLE--KTSRMW 387 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHSC--CBHHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH--HHHHHH
Confidence 32 1234445543332222333 5888999999988877776655433333222223 3566777877762 245689
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 574 NCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 574 ~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
...++.-..+|+.+.+..+++++..
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-08 Score=99.69 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=11.7
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHH
Q 005178 330 YNTLLEAMGKA-GKPGLARSLFDEMV 354 (710)
Q Consensus 330 ~~~li~~~~~~-g~~~~A~~~~~~m~ 354 (710)
++.+...|... |++++|+..|++..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34444444443 55555555544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=115.25 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=156.2
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 373 GKARWAKDALELWERMR--------ENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++.+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 67899999999999998 432 3366788889999999999999999999999876 678899999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
..|++++|...|+++++.... +...|..+..+|.+.|++++ +..|+++++.+.. +...|..+..+|.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999986543 67889999999999999999 9999999975433 56688899999999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHhhcCCcc-------cHHHHHHHHHHhcc
Q 005178 525 VITCLQQANPKLVAFLNLIEDNSTGFE-------NIKEEFRNVIKDTE 565 (710)
Q Consensus 525 ~~~~~~~~~p~~~~~~~~L~~~~~~~~-------~~~~~a~~~~~~~~ 565 (710)
.|+++.+++|++..+...++.++...+ +..++|...+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999999999999988888887764422 23555555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-08 Score=84.04 Aligned_cols=128 Identities=19% Similarity=0.162 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
|..+...|...|++++|..+|+++.+.+.. +...+..+...+...|++++|..+++++.... +.+...+..+...|.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 344455555555555555555555544222 44555555556666666666666666665544 345556666666666
Q ss_pred hCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..|++++|..+++++.+... .+...+..++..|.+.|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666655432 2455566666666666666666666666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=95.86 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=99.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 405 NMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 405 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
.++...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++.++.... +..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34445677788888877776543 234455667778888888888888888888775433 677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHhCCcHHHHHHHHHhhc
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV-ITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
++|+..|++.++.... +...|..+..+|.+.|++++|.+. ++++.+++|++..++.+.+..+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 8888888888774322 456777788888888887766654 5788888888877776665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-08 Score=93.53 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
+.+..+|...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|+++++.... +..+|..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 347778888899999999998888876 567888888888899999999999999988885433 57788888887766
Q ss_pred cCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 481 ARR--IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 481 ~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.|. .+.+...++.... ..|....+..+..++...|++++|+..|+++.+++|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 554 3445555555432 222222344455666778889999999999999999754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=92.65 Aligned_cols=193 Identities=10% Similarity=-0.082 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD---EKTLTALIKIYGKARWAKDALELWERMRENKWP-M-DFILY 400 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~ 400 (710)
+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|+..|++..+.... + ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566666677777777777777777777652 112 455666677777777777777777777664321 1 23455
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005178 401 NTLLNMCAD--------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCT 472 (710)
Q Consensus 401 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 472 (710)
..+..++.. .|++++|+..|+++.+.. +.+......+.. +..+.. --...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 556666666 677777777777766654 222222222111 111100 0011245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHhCCcHHHH
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSIDRGVKP--DDRLCGCLLSVVSLC----------ETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+..|+...+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66778888999999999998888643221 234666777777765 88889999999999888887543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-08 Score=91.91 Aligned_cols=135 Identities=12% Similarity=-0.004 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
.+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|+..|++..+.. +.+..+|..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3777888889999999999888876443 67888888888999999999999999988876 67788888888887665
Q ss_pred CC--HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 005178 447 GN--VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGC 508 (710)
Q Consensus 447 g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 508 (710)
|. ...+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 54 3445555555543 223333445556667778899999999998876 5677554433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.9e-07 Score=88.63 Aligned_cols=231 Identities=9% Similarity=-0.009 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 005178 309 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESGLTPDEKTLTALIKIY----GKA---RWAK 379 (710)
Q Consensus 309 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~~~ 379 (710)
++|+.+++.++... +-+..+|+.--..+...| ++++++++++.++... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555532 113334555555555555 5666666666655542 22333333322222 333 5667
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC------HHH
Q 005178 380 DALELWERMRENKWPMDFILYNTLLNMCADIGLVE--EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN------VDN 451 (710)
Q Consensus 380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~ 451 (710)
+++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+.+ +.|...|+.-...+...|. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777777777765444 6666666666666667666 7777777777766 5677777776666666665 778
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD-LVRVFGVSIDRG-V-KPDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
+++.+++++...+. |...|+-+...+.+.|+..+ +..+.+++.+.+ . ..+...+..+..+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888888776554 77778777777777777544 444555554322 1 22556677778888888888888888888
Q ss_pred HHH-hCCcHHHHHHHHHh
Q 005178 529 LQQ-ANPKLVAFLNLIED 545 (710)
Q Consensus 529 ~~~-~~p~~~~~~~~L~~ 545 (710)
+.+ .+|-...+++..+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 875 68877777665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-08 Score=106.97 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 005178 376 RWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIEL 455 (710)
Q Consensus 376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 455 (710)
|++++|++.|++..+.... +...+..+...|...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555666666655544222 45556666666666666666666666666554 44566666666666666666666666
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 005178 456 FEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC---ETSEDVGKVITCLQQA 532 (710)
Q Consensus 456 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 532 (710)
|++..+.... +...|..+..+|.+.|++++|++.|++..+.... +...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666654322 4556666666666666666666666666653221 344566666666666 6666666666666666
Q ss_pred CCcHHHHHHHHH
Q 005178 533 NPKLVAFLNLIE 544 (710)
Q Consensus 533 ~p~~~~~~~~L~ 544 (710)
+|+....+.+++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 666544444444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-08 Score=94.83 Aligned_cols=190 Identities=9% Similarity=-0.103 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CCHHHHH
Q 005178 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMD---FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCK-PDNYSYT 437 (710)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 437 (710)
...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++..+...-. .....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444455555555555555555555544221 2 3444455555555555555555555555432101 1133444
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 438 AMLNIYGS--------GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 438 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
.+..+|.. .|++++|+..|+++++.... +......+.. +..+... -...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 45555555 55555555555555543211 1111111100 0000000 00113567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc---HHHHHHHHHhhcCCcc---------cHHHHHHHHHHh-ccCCCChh
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPK---LVAFLNLIEDNSTGFE---------NIKEEFRNVIKD-TEVDARRP 571 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~L~~~~~~~~---------~~~~~a~~~~~~-~~~~~~~~ 571 (710)
..+|...|++++|+..|+.+.+..|+ ...++..++.++...| +..++|...+++ +...|+.+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 88899999999999999999999888 4556667776655331 255666666655 34455543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-07 Score=90.25 Aligned_cols=219 Identities=12% Similarity=0.022 Sum_probs=146.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC-C-CHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG-G-NVD 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 450 (710)
+.+..++|+++++.++..+.. +..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+... + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 334456677777777766444 5566666666666667 4788888888877766 56777777766666665 6 777
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRID--------DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---- 518 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---- 518 (710)
+++.+++++++...+ |..+|+.-...+.+.|.++ ++++.++++++.... |...|+....++.+.+.
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 888888888776544 6777777666666666666 888888888876554 66777777777777765
Q ss_pred ---hHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccH-------------------HHHHHHHHHhccCC--------C
Q 005178 519 ---SEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENI-------------------KEEFRNVIKDTEVD--------A 568 (710)
Q Consensus 519 ---~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~-------------------~~~a~~~~~~~~~~--------~ 568 (710)
++++.++++++...+|++..++..+...+...+.- .....++...+... +
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888888888898888775544322211111 23344444433211 2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 569 RRPFCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
....+.-|+++|...|+.++|.++++...
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33477889999999999999999999864
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-08 Score=112.09 Aligned_cols=172 Identities=6% Similarity=-0.103 Sum_probs=142.9
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005178 408 ADIGLVEEAERLFEDMK--------LSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLG 479 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 479 (710)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|+..|+++.+.+.. +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence 67899999999999998 544 567789999999999999999999999999986433 6789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHH
Q 005178 480 KARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRN 559 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~ 559 (710)
+.|++++|+..|+++++.... +...|..+..+|.+.|++++ ++.|+++.+++|++..++..+|.++...| ..++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g-~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG-DRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC-CHHHHHH
Confidence 999999999999999975432 45678899999999999999 99999999999999999999998888777 4566666
Q ss_pred HHHh-ccCCCChh-hHHHHHHHHHhCCC
Q 005178 560 VIKD-TEVDARRP-FCNCLIDICRNRNL 585 (710)
Q Consensus 560 ~~~~-~~~~~~~~-~~~~l~~~~~~~g~ 585 (710)
.+++ +...|+.. .|..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6655 56778754 77788888877666
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=81.26 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...+......|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 456778888899999999999999998886533 6788888999999999999999999999875432 56688889999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
|...|++++|.+.|+++.+++|++..+...|+.+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999888777765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=9e-06 Score=87.12 Aligned_cols=344 Identities=10% Similarity=-0.028 Sum_probs=177.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCC-hHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHH----HcCC
Q 005178 165 KFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQ-FQLIEQLANEMVSN-EI-ELDNITYSTIITCAK----RCNL 237 (710)
Q Consensus 165 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~-~p~~~~~~~li~~~~----~~g~ 237 (710)
++++.+..+|++.... .|++..|...+....+.++ .+....+|+..+.. |. ..+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 5799999999998764 4699999999998887774 46677888887764 43 236788888887654 3467
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005178 238 FDEAIEWFERMYKTGLMPDEVTYSAILDVYAKS-------------GKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE 304 (710)
Q Consensus 238 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 304 (710)
.+.+..+|++.+.....--...|......-... +.+..|..+++.+...--..+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 889999999999853221223343333221111 1122333334333321000123344444443222
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 305 SG--D-----YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARW 377 (710)
Q Consensus 305 ~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 377 (710)
.+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+.|..+|++.... +.+...+. .|+....
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 11 0 234555666666532 334556666666666667777777777766665 22222221 1222111
Q ss_pred HHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 005178 378 AKDALELWERMRENK---------WPM---DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGS 445 (710)
Q Consensus 378 ~~~A~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 445 (710)
.++ +++.+.+.- ..+ ...+|...+..+.+.+..+.|..+|+.. +.. ..+...|......-..
T Consensus 258 ~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 258 EEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp CTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHH
T ss_pred hhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHH
Confidence 111 122221110 000 1133444455454555666666666666 221 1233333322222222
Q ss_pred CC-CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005178 446 GG-NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGK 524 (710)
Q Consensus 446 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 524 (710)
.+ +.+.|..+|+...+.-. -+...|...++...+.|+.+.|..+|+++. -....|...+..-...|+.+.+.+
T Consensus 332 ~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 46666666666655321 123444555555566666666666666641 134455555555555566666666
Q ss_pred HHHHHH
Q 005178 525 VITCLQ 530 (710)
Q Consensus 525 ~~~~~~ 530 (710)
++++..
T Consensus 406 v~~~~~ 411 (493)
T 2uy1_A 406 LVDQKM 411 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-07 Score=85.02 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 005178 221 DNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSG----KVEEVLSLYERGVASGWKPDPIAFS 296 (710)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~ 296 (710)
+...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 33444444444443 3 4444444444444432 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHC
Q 005178 297 VLGKMFGE----SGDYDGIRYVLQEMKSLGVQ-PNLVVYNTLLEAMGK----AGKPGLARSLFDEMVES 356 (710)
Q Consensus 297 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 356 (710)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .+++++|+..|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444443 44444555544444443210 013344444444444 44444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=6e-07 Score=84.75 Aligned_cols=126 Identities=18% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR----WAKDALELWERMRENKWPMDFILYNT 402 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ 402 (710)
...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|++.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3333334444444444444444444443332 22333333333333 3 3444444444443332 2333333
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHH
Q 005178 403 LLNMCAD----IGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYGS----GGNVDNAIELFEEMSE 461 (710)
Q Consensus 403 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 461 (710)
|...|.. .+++++|++.|++..+.+ +. +...+..|..+|.. .+++++|...|++..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3333333 344444444444444332 10 13444444444444 4444444444444444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-08 Score=88.48 Aligned_cols=158 Identities=9% Similarity=0.040 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcC
Q 005178 333 LLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM-CADIG 411 (710)
Q Consensus 333 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 411 (710)
+...+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|+..|++..+... +...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 3344444555555555554444321 22334444455555555555555555554443321 22222111111 11111
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRIDDLVRV 490 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 490 (710)
...+|+..+++..+.. +.+...+..+..+|...|++++|...|+++++....+ +...+..+...|...|+.++|+..
T Consensus 89 ~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 89 AESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp TSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred ccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223455566555544 4456666666666666666666666666666644322 244566666666666666666666
Q ss_pred HHHHH
Q 005178 491 FGVSI 495 (710)
Q Consensus 491 ~~~m~ 495 (710)
|++.+
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.7e-08 Score=88.27 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=93.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCH
Q 005178 370 KIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
..+...|++++|+..+......... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCch
Confidence 3444556677777777766543111 23345566777777788888888877777765 56777777788888888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005178 450 DNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRV-FGVSIDRGVKP-DDRLCGCLLSVVSLCET 518 (710)
Q Consensus 450 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~ll~~~~~~g~ 518 (710)
++|+..|++.++.... +...|..+...|.+.|++++|.+. +++.++. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 8888888877775432 566777777778888877766654 4666663 33 34455555555555553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-07 Score=86.48 Aligned_cols=191 Identities=9% Similarity=-0.074 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-P-DEKTLTALIKIYGKARWAKDALELWERMRENKWPMDF--ILYN 401 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 401 (710)
+...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888899999999999998875311 1 1356777888888999999999999998876433211 2344
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 402 TLLNMCAD------------------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 402 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.+..++.. .|++++|...|+++.+.. +.+...+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH----
Confidence 44555544 345556666666655543 22222221111000 000000
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 464 VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 464 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+....|+.
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00112455667788888888888888876422111 2356677888888888888888888777766653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-07 Score=92.79 Aligned_cols=164 Identities=9% Similarity=-0.029 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYN-TLLN 405 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~ 405 (710)
...+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...++++.... |+..... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3445556666666666666666666666542 2345556666666666667777766666665442 2332222 2222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI-NVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 484 (710)
.+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...|+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3445566666677777766655 5666777777777777777777777777777644321 255677777777777777
Q ss_pred HHHHHHHHHHH
Q 005178 485 DDLVRVFGVSI 495 (710)
Q Consensus 485 ~~A~~~~~~m~ 495 (710)
++|...|++.+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8.1e-07 Score=84.71 Aligned_cols=188 Identities=11% Similarity=0.013 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQ-P-NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLT-PDE-KTLT 366 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~ 366 (710)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++++.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4566777888899999999999999999875321 1 1357888999999999999999999999876311 111 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 005178 367 ALIKIYGK------------------ARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDY 428 (710)
Q Consensus 367 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 428 (710)
.+..++.+ .|+.++|+..|+++.+.... +...+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 45555554 57899999999999987433 33333221111 00111111
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 429 CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.....+...|.+.|++++|+..|+++++..... ....+..+..+|.+.|+.++|++.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112346677888999999999999988753221 12567888889999999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=86.59 Aligned_cols=162 Identities=9% Similarity=0.036 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI- 442 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~- 442 (710)
.+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|+..|+++.... + +...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHH
Confidence 3455667788899999999999987765332 67788889999999999999999999887654 3 55444333222
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 521 (710)
+...+...+|...+++..+.... +...+..+..++...|++++|+..|+++++....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223334578888888875432 57888889999999999999999999988754433 34578888889999999999
Q ss_pred HHHHHHHHH
Q 005178 522 VGKVITCLQ 530 (710)
Q Consensus 522 a~~~~~~~~ 530 (710)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=92.13 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHH-HH
Q 005178 360 PDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSY-TA 438 (710)
Q Consensus 360 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 438 (710)
.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|...++++.... |+.... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHH
Confidence 34455666777777788888888888887776433 56677777778888888888888888776653 343322 22
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCE 517 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g 517 (710)
....+...++.++|...+++..+.... +...+..+...|...|++++|+..|++++...... +...+..++.+|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333355667777777777777765432 56777777788888888888888888877643221 1456777777777778
Q ss_pred ChHHHHHHHHHH
Q 005178 518 TSEDVGKVITCL 529 (710)
Q Consensus 518 ~~~~a~~~~~~~ 529 (710)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 777777777664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-07 Score=101.16 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005178 305 SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALEL 384 (710)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 384 (710)
.|++++|...|++..+.. +-+...|..+...+...|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987753 3357788899999999999999999999998764 44677888899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Q 005178 385 WERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG---GNVDNAIELFEEMSE 461 (710)
Q Consensus 385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 461 (710)
|++..+.... +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..+|... |++++|...++++.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999886433 67888899999999999999999999998876 56788899999999999 999999999999988
Q ss_pred cCCC
Q 005178 462 LGVA 465 (710)
Q Consensus 462 ~~~~ 465 (710)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=92.89 Aligned_cols=54 Identities=4% Similarity=-0.050 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSL----GVQP-NLVVYNTLLEAMGKAGKPGLARSLFDEMV 354 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 354 (710)
.|...|++++|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444555555555555554431 1000 02245555566666666666666666554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=95.99 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=103.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC--HHHHHHHHH
Q 005178 371 IYGKARWAKDALELWERMRENKW----PM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPD--NYSYTAMLN 441 (710)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~~li~ 441 (710)
.|...|++++|...|.+..+... .. -..+|+.+...|...|++++|+..|++..+...- .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554433110 00 1235556666677777777777777665442100 111 356777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAI-----NVMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCGCLLS 511 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~ 511 (710)
.|.. |++++|+..|++.++..... ...++..+...|.+.|++++|+..|++.+.. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 8877 88888888888876531111 1457788888888999999999998888752 21111 125566667
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
++...|++++|...|++.. +.|+.
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 7777899999999888888 77753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=84.07 Aligned_cols=105 Identities=10% Similarity=-0.025 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
.+...+..+...|.+.|++++|...|+++.+.... +...|..+..+|.+.|++++|+..|++++..... +...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 34567778888888888888888888888875433 6778888888888888888888888888874332 456777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.+|...|++++|...|+++.++.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=9.7e-06 Score=80.69 Aligned_cols=169 Identities=7% Similarity=-0.058 Sum_probs=122.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHH
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCT 472 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 472 (710)
..+..+...|++++|..++++..+.....++. ..+..+...|...|++++|+..|+++.+.... .+ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988754212232 13345777788888999999999999874222 22 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 473 CLIQCLGKARRIDDLVRVFGVSID----R-GVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 473 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.+...|...|++++|+..|+++++ . +..+.. .++..+..+|.+.|++++|.++++++.++.+.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~----------- 228 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR----------- 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999883 1 222222 37788999999999999999988876543221
Q ss_pred cCCcccHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 005178 547 STGFENIKEEFRNVIKDTEVDAR-RPFCNCLIDICRNRNL-NERAHELLYLGTL 598 (710)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 598 (710)
....+. ..+|..++.+|.+.|+ +++|.+.+++++.
T Consensus 229 -----------------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 -----------------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -----------------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----------------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111111 2378889999999995 6999999998853
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-06 Score=82.21 Aligned_cols=132 Identities=8% Similarity=-0.091 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
.+..+...+...|++++|.+.|++.. .++...|..+...|...|++++|...|++..+... .+...|..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 34455666777788888888877663 45777788888888888888888888888777542 2567777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVK--------------PD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~--------------p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
...|++++|+..|+++.+.... |+ ...+..+..+|...|++++|.+.|+++.+..|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888887764321 11 2567778888889999999999999988888865
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=82.87 Aligned_cols=115 Identities=8% Similarity=-0.025 Sum_probs=84.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.|+++.... +.+...+..+...+...|++++|...|+++...... +...|..+..+|...|++++|+..|++++...
T Consensus 9 ~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444433 345566777778888888888888888888775432 67778888888888888888888888887643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV 537 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 537 (710)
.. +...+..+..+|...|++++|.+.|+++.++.|++.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 22 455677788888888888888888888888776643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-07 Score=91.13 Aligned_cols=93 Identities=12% Similarity=-0.106 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYG 444 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 444 (710)
+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 333444444444444444444444433211 34444444444444444444444444444433 334444444444444
Q ss_pred hCCCHHHHHHHHHHHH
Q 005178 445 SGGNVDNAIELFEEMS 460 (710)
Q Consensus 445 ~~g~~~~A~~~~~~m~ 460 (710)
..|++++|...|+++.
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-05 Score=80.22 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWP-MDF----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTA 438 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 438 (710)
.+..+...|++++|..++++..+.... ++. ..+..+...+...|++++|+..|++..+......+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677888888888888888764321 121 12334666666778899999999988874321233 346888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSE----L-GVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDR----GVKPD-DRLCG 507 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 507 (710)
+...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999998874 1 11222 347888899999999999999999888742 22223 55788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 005178 508 CLLSVVSLCET-SEDVGKVITCLQQ 531 (710)
Q Consensus 508 ~ll~~~~~~g~-~~~a~~~~~~~~~ 531 (710)
.+..+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999994 6999998888754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-06 Score=78.78 Aligned_cols=125 Identities=9% Similarity=-0.030 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADI 410 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 410 (710)
..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|+..|++..+... .+...+..+..+|...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence 334455555566666666555542 34555555566666666666666666666555432 2455556666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 411 GLVEEAERLFEDMKLSDYCKPD----------------NYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 411 g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
|++++|++.|++..+.. +.+ ...+..+..+|...|++++|...|+++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666665543 122 256666666777777777777777776664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=82.57 Aligned_cols=142 Identities=10% Similarity=0.038 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQ 476 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 476 (710)
....+...+...|++++|.++|+.+...+ |+......+...|.+.|++++|+..|+...... .|. ...+..+..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 34456667788888999988888887644 443366667778888999999999988655421 111 236777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+|+ ..+...|..
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 89999999999999998875333254 235666777888999999999999999999998 666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-05 Score=76.55 Aligned_cols=181 Identities=8% Similarity=-0.079 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR-IDDLVR 489 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~ 489 (710)
+++++.+++.+.... +.+..+|+.-...+...| .+++++.+++.+.+...+ |..+|+.-...+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHH
Confidence 567777777777765 567777777777777766 377888888888776554 77777777777777777 578888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc-c---
Q 005178 490 VFGVSIDRGVKPDDRLCGCLLSVVSLC--------------ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-E--- 551 (710)
Q Consensus 490 ~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-~--- 551 (710)
.++++++..+. |...|+....++.+. +.++++.+++..+...+|++..++..+....... |
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 88888776544 566666665555544 4577888889999999999988776443222111 1
Q ss_pred ------cHHHHHHHHHHh-ccCCCChhhHHHHHHHH-----HhCCCHHHHHHHHHHHHH
Q 005178 552 ------NIKEEFRNVIKD-TEVDARRPFCNCLIDIC-----RNRNLNERAHELLYLGTL 598 (710)
Q Consensus 552 ------~~~~~a~~~~~~-~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~ 598 (710)
+.++++.+.+++ +..+|+. .|..+.-++ ...|..++....+++..+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 355666666655 4667776 454332222 246777788888887653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-05 Score=77.28 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---
Q 005178 415 EAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN-------VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI--- 484 (710)
Q Consensus 415 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--- 484 (710)
++++.++++.+.. +.|...|+.....+.+.++ ++++++.+++++..... |...|+-+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~ 261 (349)
T 3q7a_A 185 SELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVP 261 (349)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccc
Confidence 5666666666655 4566666666666655554 56666666666654433 555665555555554443
Q ss_pred -----------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HhCCcHHHHHH
Q 005178 485 -----------------DDLVRVFGVSIDRG-----VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQ-QANPKLVAFLN 541 (710)
Q Consensus 485 -----------------~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 541 (710)
.....+..++...+ -.+....+..|+..|...|+.++|.++++.+. +.+|--...++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 262 ILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp GHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 11222222222111 02345556666677777777777777777664 45665444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=80.25 Aligned_cols=126 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCH--H
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC-LGKARRI--D 485 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 485 (710)
..|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.... +...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 4567777777777776655 566777777777888888888888888877764332 56667777777 6677777 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+|+..|+++++.... +...+..+..+|...|++++|...|+++.+..|++..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 888888877764322 4556777777788888888888888888887776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-05 Score=78.63 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--HHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDE------KTLTALIKIYGKARWAKDALELWERMRENKWP---MD--FIL 399 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~ 399 (710)
...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445555666666666666555543211 11 11222333344445555555555554432111 11 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKL---SDYCKP--DNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++.+...|...|++++|...|++..+ .....+ ...++..+...|...|++++|...+++..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555555555554431 110000 01344444455555555555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=72.71 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...|..+...|...|++++|..+++++.+... .+...+..+...+.+.|++++|+.+|+++.+... .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45666677777777777777777777766432 2566677777777777777777777777765432 245567777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
|...|++++|...++++.+..|+...+...++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 777888888888888877777777666655554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-06 Score=74.58 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++..+... .+...|..+..++.+
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 333344444444444444444444333 23344444444444444444444444444444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSID 496 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~ 496 (710)
.|++++|+..|+++.+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.3e-06 Score=74.83 Aligned_cols=128 Identities=13% Similarity=-0.027 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005178 363 KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442 (710)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 442 (710)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 34555566666667777777777766654322 55666666666667777777777777666654 4556666666667
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCT--CLIQCLGKARRIDDLVRVFGVS 494 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 494 (710)
|...|++++|...|+++.+.... +...+. .++..+.+.|++++|+..++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766654322 333332 2222244555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.5e-06 Score=71.79 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.+.. +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHH
Confidence 345556666777777777777777776665 566777777777777777777777777777765432 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 005178 478 LGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~~ 497 (710)
|...|++++|++.|++.++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 77777777777777777763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-06 Score=72.97 Aligned_cols=111 Identities=10% Similarity=0.014 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...|..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 345666777778888888888888887775432 5677788888888888888888888888764322 45677778888
Q ss_pred HHhcCChHHHHHHHHHHHHhC------CcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQAN------PKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~L~~ 545 (710)
+...|++++|...|+++.+++ |++..+...+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 888888888888888888887 777666665554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=9.3e-07 Score=87.52 Aligned_cols=189 Identities=11% Similarity=-0.051 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...++++++.... +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 55677788888999999999999999998876 568889999999999999999999999999885432 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcc
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGV----KPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFE 551 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~ 551 (710)
.+|...|++++|+..|++..+.+. ......+..+ .. .++...........|....+...++... .|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RI------AKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 999999999999999998875321 1111122211 11 1222222222334455555555555432 14
Q ss_pred cHHHHHHHHH-HhccCCCChh-hHHHHHHHHHhC-CCHHHHHHHHHHHHH
Q 005178 552 NIKEEFRNVI-KDTEVDARRP-FCNCLIDICRNR-NLNERAHELLYLGTL 598 (710)
Q Consensus 552 ~~~~~a~~~~-~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 598 (710)
..++|.+.+ +.+...|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 150 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 -ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444443 4456666654 344555556655 668889999987654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0001 Score=73.52 Aligned_cols=189 Identities=11% Similarity=0.060 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKAR--WAKDALELWERMRENKWPMDFILYNTLLNMCADIGL-VEEAERLF 420 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 420 (710)
++++.+++.+.... +.+..+|+.-.-.+.+.+ .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34444444444332 223334433333333333 244445555544444322 44444444444444444 34555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----
Q 005178 421 EDMKLSDYCKPDNYSYTAMLNIYGSG--------------GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA----- 481 (710)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 481 (710)
+.+.+.. +.|...|+.....+... +.++++++.+.+.+...+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 5555444 34444444444333332 2345555555555554322 444554333333333
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 482 ------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLS-----VVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 482 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+.++++++.++++++ +.||.. |..+.. +....|..+++...+.++.+++|.-...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 345667777777665 334432 221111 11234556667777777777777655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=81.40 Aligned_cols=157 Identities=11% Similarity=-0.068 Sum_probs=91.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhCCCH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS----DYCKPDNYSYTAMLNIYGSGGNV 449 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~ 449 (710)
..|++++|.++++.+... .......+..+...|...|++++|...+++.... +..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666644333321 1123455566666666666666666666665441 11012345566677777777777
Q ss_pred HHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCC
Q 005178 450 DNAIELFEEMSEL----GVAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--V-KPD--DRLCGCLLSVVSLCET 518 (710)
Q Consensus 450 ~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~ll~~~~~~g~ 518 (710)
++|...+++..+. +-.+ ....+..+...+...|++++|+..+++..+.. . .+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777776552 1111 23456667777777888888888877766321 1 111 1245667778888888
Q ss_pred hHHHHHHHHHHHH
Q 005178 519 SEDVGKVITCLQQ 531 (710)
Q Consensus 519 ~~~a~~~~~~~~~ 531 (710)
+++|.+.++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-06 Score=80.67 Aligned_cols=168 Identities=12% Similarity=-0.027 Sum_probs=125.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCC--HH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDF-----ILYNTLLNMCADIGLVEEAERLFEDMKLSDYC--KPD--NY 434 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~ 434 (710)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677888999999999999988875433211 22344566677889999999999998754310 122 45
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-H
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSE---LG-VAI--NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG----VKPD-D 503 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~-~ 503 (710)
+|+.+...|...|++++|...|+++.+ .. ..+ ...+|..+...|.+.|++++|+..+++.++.. .... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 889999999999999999999999873 21 111 12588899999999999999999999887431 1111 5
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 005178 504 RLCGCLLSVVSLCETSEDV-GKVITCLQQ 531 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 531 (710)
.+|..+..+|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777877654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=74.13 Aligned_cols=115 Identities=7% Similarity=-0.101 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+.+...|..+...|...|++++|...|+++.+.... +...+..+..+|...|++++|+..|+++.+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 345567777777777888888888888877764322 567777777777788888888888887776432 245677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
..+|...|++++|.+.|+++.+.+|++..+...++.+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 127 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7788888888888888888888887776665555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.47 E-value=6.9e-06 Score=69.13 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+...|++++|.++|+++.+.. +.+..++..+...|...|++++|..+++++.+... .+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHH
Confidence 3455555666666666666666666665544 34556666666666666666666666666665432 24556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.|...|++++|...|+++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666666653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-05 Score=77.85 Aligned_cols=197 Identities=7% Similarity=-0.098 Sum_probs=139.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTL-------LEAMGKAGKPGLARSLFDEMVESGLTPD--------------- 361 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 361 (710)
..++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..++.-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788888888888888753 2355677777 4666666666666666555544 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC--
Q 005178 362 -------EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD-- 432 (710)
Q Consensus 362 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-- 432 (710)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 1233456677888999999999998887654 443366666778889999999999998665421 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 34678889999999999999999999885443253 346777788899999999999999999874 4554344333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=74.79 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++.+.... +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 4456667777778888888888888887766 567778888888888888888888888888775433 5677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDR 504 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (710)
+|.+.|++++|+..|++.++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 888888888888888888763 35543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=9.6e-07 Score=77.24 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
+...+..+...+...|++++|...|+++...+.. +...|..+..+|.+.|++++|+..|++.+..... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 4455666777777788888888888887775432 6677777777888888888888888887764322 4456667777
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+|...|++++|.+.|+.+.++.|++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888777665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-06 Score=85.97 Aligned_cols=115 Identities=9% Similarity=-0.017 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--------------VMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
...|..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34455555555555555555555555555332211 4667777777777777777777777777643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 499 VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 499 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
.. +...|..+..+|...|++++|...|+++.+++|++..+...|+.++.
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 22 45677777777778888888888888777777776655555554433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.2e-06 Score=69.33 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 507 GCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 507 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
..+..+|...|++++|.+.++++.+..|++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 333333333444444444444433333333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=7.8e-06 Score=68.04 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...+..+...+...|++++|...|++..+... .+...+..+..+|...|++++|+..+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 44566666777777777777777777766432 25666777777777777777777777777654322 45566777777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+...|++++|.+.++++.+.+|++..+...++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777888888888888777777777666555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.6e-06 Score=68.90 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
+...+...|++++|...|++..... +.+...+..+...|...|++++|...+++..+... .+...+..+..+|.+.|
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHHhC
Confidence 3333333444444444444333332 22333344444444444444444444444333211 12333334444444444
Q ss_pred CHHHHHHHHHHHH
Q 005178 483 RIDDLVRVFGVSI 495 (710)
Q Consensus 483 ~~~~A~~~~~~m~ 495 (710)
++++|+..|++..
T Consensus 95 ~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 95 KHVEAVAYYKKAL 107 (131)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-06 Score=70.56 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...++++.+.... +...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34455556666666666666666666666544 345666666666666666666666666666654322 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|.+.|++++|+..|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.2e-07 Score=84.12 Aligned_cols=140 Identities=9% Similarity=0.037 Sum_probs=91.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC---------------HHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN---------------VMG 470 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~ 470 (710)
.....|+++.+.+.++...... ......+..+...+...|++++|...|++.++...... ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 3344455555555554333221 12344566666777777777777777777766322211 267
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcC
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNST 548 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~ 548 (710)
|..+..+|.+.|++++|+..+++.++... .+...+..+..+|...|++++|.+.|+++.+++|++..+...++.++.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 78888888889999999999988887532 256678888888889999999999999998888888777776665433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=70.55 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRL 505 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 505 (710)
+.+...+..+...+...|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.++.... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 346777888888888888999998888888874 355 677888888889999999999999888864322 5667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+..+..+|...|++++|.+.|+++.+.+|++..+...+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 78888889999999999999999999999887777666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.7e-06 Score=76.49 Aligned_cols=120 Identities=7% Similarity=-0.004 Sum_probs=83.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhCCCH--H
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNI-YGSGGNV--D 450 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 450 (710)
..|++++|+..++...+... .+...+..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45667777777777666533 256677777777777788888888887777665 4567777777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 451 NAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 451 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|...|+++.+.... +...+..+...|...|++++|+..|+++++.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887775432 4667777777888888888888888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-06 Score=77.80 Aligned_cols=132 Identities=12% Similarity=0.022 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVES----GLTP-DEKTLTALIKIYGKARWAKDALELWERMREN----KWPM--DF 397 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--~~ 397 (710)
++..+...+...|++++|...|++..+. +..+ ....+..+...|...|++++|...+++..+. +-.+ ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4444444455555555555555444331 1011 1223444444444555555555544443321 1000 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
..+..+...+...|++++|...+++..+......+ ..++..+...|...|++++|...+++..
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23444444455555555555555444321000011 1223444444455555555555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=81.79 Aligned_cols=146 Identities=13% Similarity=-0.001 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+...+..+...|.+.|++++|+..|++.++.. |+...+ ..+.+..+- .. ....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~----~~----~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ----AL----RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH----HH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH----HH----HHHHHHHHHH
Confidence 35567777777777778888877777776642 211000 001111100 00 1345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 406 MCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 406 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
+|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.|+.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666655 456666666777777777777777777766664322 4556666666666666666
Q ss_pred HH-HHHHHHHH
Q 005178 486 DL-VRVFGVSI 495 (710)
Q Consensus 486 ~A-~~~~~~m~ 495 (710)
+| ...|+.|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-06 Score=75.14 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|+..|+...... +.+...|..+..+|...|++++|+..|+++.+.... +...|..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 34456667777888888888888888887766 567788888888888888888888888888775432 567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|...|++++|+..|++.++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888775
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.6e-06 Score=69.95 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCL 509 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 509 (710)
+.+...|..+...+...|++++|...|++.++.... +...|..+..+|...|++++|+..|++.+..... +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 345667777777777777777777777777665432 5667777777777777777777777777764322 45567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..+|...|++++|...|+++.+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 77777788888888877777776665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=68.86 Aligned_cols=101 Identities=8% Similarity=-0.007 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG--VKPD----DRLCGC 508 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 508 (710)
++..+...|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555553321 34455555555555555555555555554321 1111 124455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 509 LLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 509 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+..++...|++++|++.|++.....|+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5556666666666666666666655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-06 Score=73.90 Aligned_cols=106 Identities=9% Similarity=-0.047 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
.+...|..+...|...|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|++.++.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566777777888888888888888888775432 6777888888888888888888888888764322 466777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
.+|...|++++|.+.|+++.+++|++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 8888888888888888888888877655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=68.18 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cC----HHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--IN----VMGC 471 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~ 471 (710)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|+..+++.++.... .+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456667777888888888888888887765 567788888888888888888888888887763211 11 2467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
..+..++...|++++|++.|++.+. ..||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 7778888888899999988888876 345655433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.2e-05 Score=66.62 Aligned_cols=96 Identities=8% Similarity=-0.086 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 445566667777777777777777777665 566777777777777777777777777777775432 46677777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~ 496 (710)
|...|++++|+..|++.++
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7778888888877777765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00043 Score=72.80 Aligned_cols=167 Identities=11% Similarity=0.001 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 005178 295 FSVLGKMFGESGDYDGIRYVLQEMKSL-GVQPNL----VVYNTLLEAMGKAGKPGLARSLFDEMVE----SGLTPD-EKT 364 (710)
Q Consensus 295 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~ 364 (710)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555555555555555544331 000111 1122222233334566666666655542 122222 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC-C--HH
Q 005178 365 LTALIKIYGKARWAKDALELWERMREN--KW--PM-DFILYNTLLNMCADIGLVEEAERLFEDMKLSD--YCKP-D--NY 434 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~-~--~~ 434 (710)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... ...| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666777777777777776665431 11 11 23456677777777888888877777654421 1011 1 24
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.+..++..+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556666777778888888877777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.7e-06 Score=69.11 Aligned_cols=98 Identities=9% Similarity=-0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (710)
..+...+.+.|++++|...|+++++.... +...|..+..++...|++++|+..|++.++.... +...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34445555566666666666666553322 4555555666666666666666666666553221 344555556666666
Q ss_pred CChHHHHHHHHHHHHhCCcH
Q 005178 517 ETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p~~ 536 (710)
|++++|...++++.+.+|++
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 66666666666666655544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-05 Score=62.90 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 397 FILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
...+..+...+...|++++|...|++..... +.+...+..+...|...|++++|...+++..+.... +...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666677777777777777776654 456667777777777777777777777777664322 4666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 777777777777777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.8e-06 Score=75.24 Aligned_cols=111 Identities=8% Similarity=0.000 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CC--------Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSEL--------GV--------AI-NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+......+.+.|++++|+..|.+.++. .. .| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555666666777777777777666553 00 11 346788899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHH-HHHHHHHh
Q 005178 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLV-AFLNLIED 545 (710)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~L~~ 545 (710)
.... +...|..+..+|...|++++|...|+++.+++|++. .+...|..
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5422 566888999999999999999999999999999988 55555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-05 Score=81.48 Aligned_cols=168 Identities=10% Similarity=-0.052 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhC
Q 005178 377 WAKDALELWERMRENKWPMDFILYNTLLNMCADIGL----------VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSG 446 (710)
Q Consensus 377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 446 (710)
..++|++.++++.+.+.. +..+|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 345677777777776444 55666665555656666 888888888888876 67788888888888888
Q ss_pred C--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 005178 447 G--NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR-RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC------- 516 (710)
Q Consensus 447 g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------- 516 (710)
| ++++++..++++.+.+.+ |..+|+.-...+.+.| .++++++.++++++..+. |...|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887655 7888888877788888 788888888888776544 666777766666552
Q ss_pred -------CChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCC
Q 005178 517 -------ETSEDVGKVITCLQQANPKLVAFLNLIEDNSTG 549 (710)
Q Consensus 517 -------g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~ 549 (710)
+.++++.+++.++...+|++..++..++..+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 456788888888888888888877777665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=65.64 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVK-PDDRLCGCLL 510 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll 510 (710)
+...+..+...+...|++++|...|+++.+.... +...|..+..++...|++++|+..|++.++.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3445666677777777777777777777664332 5666777777777777777777777777764211 0355677777
Q ss_pred HHHHhc-CChHHHHHHHHHHHHhCCc
Q 005178 511 SVVSLC-ETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 511 ~~~~~~-g~~~~a~~~~~~~~~~~p~ 535 (710)
.+|... |++++|.+.++.+.+..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 777777 7777777777777776664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=2.8e-05 Score=67.68 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|+++.+.+.. +...|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 345556666777788888888887777765 567777777777888888888888888887775432 56667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005178 478 LGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 478 ~~~~g~~~~A~~~~~~m~~ 496 (710)
|...|++++|+..|++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-05 Score=84.16 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
...|..+..+|.+.|++++|+..|+++++.... +...|..+..+|...|++++|...|+++.+++|++..+...++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456677777777778888888777777764322 4567777777888888888888888888877777766666665544
Q ss_pred CCcc
Q 005178 548 TGFE 551 (710)
Q Consensus 548 ~~~~ 551 (710)
...+
T Consensus 396 ~~~~ 399 (457)
T 1kt0_A 396 KKAK 399 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.5e-05 Score=79.81 Aligned_cols=161 Identities=10% Similarity=-0.041 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCcC-HHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDN----YSYTAMLNIYGSGGNVDNAIELFEEMSE----LGVAIN-VMG 470 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 470 (710)
+..+...|...|++++|.+++..+.......++. .+.+.+...+...|++++|..++.+... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4566777777777777777777665421101111 2233444455567888888888887754 222222 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC---CcH----HH
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDR--GV--KPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQAN---PKL----VA 538 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 538 (710)
+..+...|...|++++|..+++++... +. .+. ..++..++..|...|++++|..+++++..+. ++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888899999999999998887632 22 222 3377788889999999999999998876542 221 22
Q ss_pred HHHHHHhhcCCcccHHHHHHHH
Q 005178 539 FLNLIEDNSTGFENIKEEFRNV 560 (710)
Q Consensus 539 ~~~~L~~~~~~~~~~~~~a~~~ 560 (710)
+...+|..+...++..+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566555555444443333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=4.2e-05 Score=70.90 Aligned_cols=94 Identities=14% Similarity=-0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQC 477 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 477 (710)
..+..+..+|...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 455556666666666666666666666554 455666666666666666666666666666654321 44555555555
Q ss_pred HHhcCCHHHHH-HHHHHH
Q 005178 478 LGKARRIDDLV-RVFGVS 494 (710)
Q Consensus 478 ~~~~g~~~~A~-~~~~~m 494 (710)
+...++.+++. ..|..|
T Consensus 166 ~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 55555555444 333333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=5.4e-05 Score=65.09 Aligned_cols=98 Identities=14% Similarity=-0.027 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|...|.+..... +.+...|..+..+|...|++++|...+++..+.... +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 56667777777777788888888877777665 456777777888888888888888888877775433 567777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.+|...|++++|+..|++.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888877764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-05 Score=68.01 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
+...+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566667777778888888888888877765 557777888888888888888888888888775432 577777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005178 476 QCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.+|.+.|++++|+..|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888887753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.6e-05 Score=66.16 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--cC----HHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA--IN----VMGCTC 473 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 473 (710)
+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...++++.+.... ++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444444455555555555555544433 334444555555555555555555555554442110 11 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005178 474 LIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 474 li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+..+|.+.|++++|...|+++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-05 Score=65.12 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK 480 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 480 (710)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.... +...+..+..+|.+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345556667777777777777777665 456777777777777777777777777777765432 56667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 005178 481 ARRIDDLVRVFGVSID 496 (710)
Q Consensus 481 ~g~~~~A~~~~~~m~~ 496 (710)
.|++++|+..|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=64.89 Aligned_cols=107 Identities=13% Similarity=0.031 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCC----HHHHHHH
Q 005178 365 LTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYC-KPD----NYSYTAM 439 (710)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~~l 439 (710)
+..+...+...|++++|...|++..+... .+...+..+...|...|++++|...+++....... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 44444555555555555555555554421 24455555555556666666666666555543210 111 5556666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
..+|...|++++|...|+++.+.. |+...+..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 666666777777777776666632 344444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.2e-05 Score=62.21 Aligned_cols=92 Identities=10% Similarity=-0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP--DNYSYTAMLNIYG 444 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 444 (710)
.+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.|++..+.. +. +...+..+..+|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHH
Confidence 3334444444444444444444433211 33334444444444444444444444444432 22 3444444444444
Q ss_pred hC-CCHHHHHHHHHHHHH
Q 005178 445 SG-GNVDNAIELFEEMSE 461 (710)
Q Consensus 445 ~~-g~~~~A~~~~~~m~~ 461 (710)
.. |++++|.+.+++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00012 Score=62.13 Aligned_cols=102 Identities=16% Similarity=-0.041 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINV---MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD--DRLCGCLLSV 512 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~ 512 (710)
.+...+...|++++|...|+++.+.... +. ..+..+..+|.+.|++++|+..|+++++...... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455666777777777777777664322 22 4666677777777777777777777775332110 4456667777
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+...|++++|...|+.+.+..|+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 7788888888888888877777765443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-05 Score=67.27 Aligned_cols=104 Identities=10% Similarity=0.017 Sum_probs=74.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAI------N-----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-----GV 499 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 499 (710)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445555666666666666666666532220 2 237888888888888888888888888873 12
Q ss_pred CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 500 KPDDR-LC----GCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 500 ~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.|+.. .| .....++...|++++|+..|+++.++.|++...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 66644 77 888899999999999999999999988876543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=62.50 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMK 319 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~ 319 (710)
.+..+...+...|++++|...|++..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 55 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL 55 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333334444444444444444433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=80.87 Aligned_cols=81 Identities=7% Similarity=-0.102 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+...|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|.+.|+++.+++|++..+...|+.+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567788888888888888888888888874322 466788888888889999999999999888888887777766655
Q ss_pred cC
Q 005178 547 ST 548 (710)
Q Consensus 547 ~~ 548 (710)
+.
T Consensus 351 ~~ 352 (370)
T 1ihg_A 351 KQ 352 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00011 Score=79.89 Aligned_cols=173 Identities=7% Similarity=-0.074 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN----------VDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
.-++|.+.++++.+.+ +.+..+|+.--.++...|+ +++++..++++.+...+ +..+|..-..++.+.
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 4468899999999887 6788889888888877777 99999999999997665 888999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc--------
Q 005178 482 R--RIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-TSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF-------- 550 (710)
Q Consensus 482 g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~-------- 550 (710)
| ++++++..++++++...+ +...|+.-..++.+.| .++++.+.+.++.+.+|++..++...+......
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 779999999999987655 7788988888888888 899999999999999999998876655432211
Q ss_pred -----ccHHHHHHHHHH-hccCCCChh-hHHHHHHHHHhCCCHHH
Q 005178 551 -----ENIKEEFRNVIK-DTEVDARRP-FCNCLIDICRNRNLNER 588 (710)
Q Consensus 551 -----~~~~~~a~~~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~ 588 (710)
.+..+++.+++. .+...|+.. .|.-+.+.+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 135566666654 466677544 89999999999888655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=80.62 Aligned_cols=147 Identities=11% Similarity=-0.003 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLI 475 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 475 (710)
....+..+...+.+.|++++|...|.+..... |+... +...|+.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 35567777777788888888888888877643 33321 223344444332221 13677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
.+|.+.|++++|+..|++.++... -+...|..+..+|...|++++|...|+++.+++|++..+...|+.+........+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999888887432 2566788888888889999999999988888888887777666654333233344
Q ss_pred HHHHHHHh
Q 005178 556 EFRNVIKD 563 (710)
Q Consensus 556 ~a~~~~~~ 563 (710)
++..++++
T Consensus 317 ~a~~~~~~ 324 (338)
T 2if4_A 317 KQKEMYKG 324 (338)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.9e-05 Score=66.17 Aligned_cols=138 Identities=11% Similarity=-0.011 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVA-IN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV-KPD----D 503 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 503 (710)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|+..+++..+... ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666667777777777777777776542111 11 24667777778888888888888887764210 011 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHHhC
Q 005178 504 RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICRNR 583 (710)
Q Consensus 504 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (710)
..+..+..++...|++++|.+.++++.+..+.. +.... ....+..+..+|...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~-------------~~~~~~~la~~~~~~ 142 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--------------KDRIG-------------EGRACWSLGNAYTAL 142 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCHHH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------cchHh-------------HHHHHHHHHHHHHHc
Confidence 366777888889999999998887765431110 00000 012567788899999
Q ss_pred CCHHHHHHHHHHHHH
Q 005178 584 NLNERAHELLYLGTL 598 (710)
Q Consensus 584 g~~~~A~~~~~~~~~ 598 (710)
|++++|.+.++++.+
T Consensus 143 g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.2e-05 Score=66.48 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 400 YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD----NYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
+..+...|...|++++|.+.+++..+......+ ...+..+...|...|++++|...+++..
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444455555555544443321100011 2334444555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=66.81 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005178 446 GGNVDNAIELFEEMSELG--VAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVG 523 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 523 (710)
.|++++|+..|++.++.+ -+.+...|..+..+|.+.|++++|+..|++.++.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766643 1123456666777777777777777777777664322 3556666777777777777777
Q ss_pred HHHHHHHHhCCcHHHH
Q 005178 524 KVITCLQQANPKLVAF 539 (710)
Q Consensus 524 ~~~~~~~~~~p~~~~~ 539 (710)
..++++.+..|++..+
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777777766665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.4e-05 Score=80.27 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=56.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 33445555555555555544222 34555555555555555555555555555543 3445555555555555555555
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQC--LGKARRIDDLVRVFG 492 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 492 (710)
|...|+++.+.... +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555553221 22233333333 555555555555555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.89 E-value=1.8e-05 Score=84.53 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=96.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..++++.+.... +...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3445667899999999999999876 677999999999999999999999999999996533 6788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 005178 483 RIDDLVRVFGVSIDRGVKPDDRLCGCLLSV--VSLCETSEDVGKVIT 527 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~ 527 (710)
++++|++.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999874322 22344445444 788899999999998
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=64.28 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+...|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|+..|++.+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3466777777788888888888888887775432 5677777788888888888888888877763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00039 Score=58.77 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHH
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDN---YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN--VMGCTCLIQ 476 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~ 476 (710)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..+|...|++++|...|+++.+...... ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34555666777777777777776654 2233 4666677777777777777777777766432211 455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005178 477 CLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~ 497 (710)
+|.+.|++++|+..|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00024 Score=75.48 Aligned_cols=138 Identities=14% Similarity=-0.006 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...|..+...+.+.|++++|+..|++.++.. |+...+ ..+... .+... ....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~----~~~~~----~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESK----ASESF----LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHH----HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHH----HHHHH----HHHHHHHHHHH
Confidence 4466667777777777777777777766531 111000 000000 00000 13456666667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|+++++.... +...+..+..++.+.|+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776655 456667777777777777777777777777664321 34456666666666666665
Q ss_pred HH
Q 005178 487 LV 488 (710)
Q Consensus 487 A~ 488 (710)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00029 Score=72.38 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005178 327 LVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNM 406 (710)
Q Consensus 327 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 406 (710)
...+..+...+.+.|++++|+..|++.++.- +. +......+.+.. .. +.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~~~----~~----~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADGAK----LQ----PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHHGG----GH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHHHH----HH----HHHHHHHHHHHHH
Confidence 4556777777777888888888777766420 00 000001111110 00 0134456666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+..++.+.++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777766654 455666666666677777777777777666664322 44555555555555555554
Q ss_pred HH
Q 005178 487 LV 488 (710)
Q Consensus 487 A~ 488 (710)
+.
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00046 Score=60.20 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----CH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKP-----DN-----YSYTAMLNIYGSGGNVDNAIELFEEMSEL-----G 463 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 463 (710)
.+......+.+.|++++|++.|++..+.....| +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 344455566667777777777777666541000 23 38888999999999999999999998874 1
Q ss_pred CCcC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 464 VAIN-VMGC----TCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 464 ~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1454 5677 8899999999999999999999875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.9e-05 Score=76.10 Aligned_cols=153 Identities=11% Similarity=-0.057 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 005178 362 EKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLN 441 (710)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 441 (710)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 556777888889999999999999998875 233221 22233344433222 1 136788888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HHhcCCh
Q 005178 442 IYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDD-RLCGCLLSV-VSLCETS 519 (710)
Q Consensus 442 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~-~~~~g~~ 519 (710)
+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++++ +.|+. ..+..+..+ ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888543 2678889999999999999999999998865 34443 344444444 2334566
Q ss_pred HHHHHHHHHHHHhCCcHH
Q 005178 520 EDVGKVITCLQQANPKLV 537 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~ 537 (710)
+++.++|+.+.+..|++.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 777888888887777653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=9.7e-05 Score=64.32 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC-----------ETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
+++|+..|++.++.+.. +...|..+..+|... |++++|++.|+++.+++|++..+...+.
T Consensus 62 ~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34666666666653222 344666666666655 4788999999999999998876665554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.5e-05 Score=62.76 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=7.5
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 005178 403 LLNMCADIGLVEEAERLFED 422 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~ 422 (710)
+..+|...|++++|+..|++
T Consensus 67 l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0028 Score=54.52 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-
Q 005178 265 DVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK- 339 (710)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~- 339 (710)
..|...+.+++|++.|++..+.| +...+..|..+|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333334444444444444432 33344444444443 344444444444444432 33333344444444
Q ss_pred ---cCCHHHHHHHHHHHHHC
Q 005178 340 ---AGKPGLARSLFDEMVES 356 (710)
Q Consensus 340 ---~g~~~~A~~~~~~m~~~ 356 (710)
.+++++|...|++..+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 34444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00052 Score=72.83 Aligned_cols=124 Identities=9% Similarity=-0.048 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCC-HHHHHH
Q 005178 372 YGKARWAKDALELWERMREN---KWPM----DFILYNTLLNMCADIGLVEEAERLFEDMKLS-----DYCKPD-NYSYTA 438 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~ 438 (710)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|+.++++..+. |...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655431 0111 1335555666666666666666655554331 211122 245566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCC-c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSE-----LGVA-I-NVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|...|...|++++|..++++..+ .|.. | ...+.+.+..++...|++++|..+|.++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665543 1221 1 12233444445555555555555555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0045 Score=53.13 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 005178 412 LVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDL 487 (710)
Q Consensus 412 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A 487 (710)
++++|.+.|++..+.+ .++.. |...|...+.+++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3445555555555444 23322 4444444455555555555555432 34444555555554 4555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHh
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSL----CETSEDVGKVITCLQQA 532 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~ 532 (710)
+..|++..+.| +...+..|...|.. .++.++|.++|++..+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555555543 34444445555554 45555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00029 Score=61.34 Aligned_cols=98 Identities=19% Similarity=0.148 Sum_probs=65.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN----------VDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+.+.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++.+.. +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4455667777777766665 5666677766666666654 35777777777774433 566777777777
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 479 GKA-----------RRIDDLVRVFGVSIDRGVKPDDRLCGCLLS 511 (710)
Q Consensus 479 ~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 511 (710)
... |++++|++.|++.++ +.|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 766 478889999988887 5666555544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00045 Score=73.31 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=43.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSL-----G-VQPN-LVVYNTLLEAMGKAGKPGLARSLFDEMVES-----GL-TP-DEKTLTA 367 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p-~~~~~~~ 367 (710)
+..+|++++|+.++++.++. | -.|+ ..+++.|..+|...|++++|..++++.++. |- .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666655431 1 0111 234556666666666666666666554421 10 11 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 005178 368 LIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~ 389 (710)
|...|...|++++|+.+|++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=60.15 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 398 ILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..+++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555555555443 34455555555555555555555555555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0006 Score=53.32 Aligned_cols=78 Identities=6% Similarity=-0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
...+..+...+...|++++|+..|++.++.... +...+..+..+|...|++++|.+.++++.+.+|++..+...++.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 445566666677777777777777776653221 455666777777777777777777777777777766666555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0019 Score=53.31 Aligned_cols=78 Identities=15% Similarity=0.038 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|+..|++..+.... +...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444433221 34444444455555555555555555544443 3344445555555555555555555555444
Q ss_pred H
Q 005178 461 E 461 (710)
Q Consensus 461 ~ 461 (710)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00096 Score=54.44 Aligned_cols=68 Identities=6% Similarity=-0.171 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 468 VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 468 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
...|..+...+.+.|++++|+..|++.++.... +...+..+..+|...|++++|++.++++.+++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 344555555666666666666666666543221 34455566666666666666666666666666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0025 Score=52.52 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 416 AERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
|++.|++..+.. +.+...+..+...|...|++++|...|++.++.... +...|..+..+|...|++++|+..|++.+
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444433 344455555555555555555555555555443221 33444444445555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.003 Score=49.15 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
+..+...|...|++++|...|++..+.... +...+..+..+|.+.|++++|+..|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334444444444444444444332211 23334444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0027 Score=50.97 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI 495 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 495 (710)
.+...+..+..+|...|++++|+..|+++++.... +...|..+..+|.+.|++++|+..|++.+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666666666665554322 34455555555666666666666655554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.011 Score=59.08 Aligned_cols=73 Identities=8% Similarity=-0.092 Sum_probs=62.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
..+..+|..+...+...|++++|+..+++++..+ |+...|..+..++.-.|++++|.+.|+++..++|...++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 4577888888777777899999999999999864 787788788888899999999999999999999988653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0047 Score=49.46 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 396 DFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677778888888888888888888887766 45677888888888888888888888887765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.012 Score=50.45 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR---RIDDLVRVFGVSIDRGVKP--DDRLCGCLLSVVSLCETSEDV 522 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a 522 (710)
.+..+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666776666555 57788778888888887 5668898998888754 24 234556677788999999999
Q ss_pred HHHHHHHHHhCCcHHHHHHHH
Q 005178 523 GKVITCLQQANPKLVAFLNLI 543 (710)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~L 543 (710)
.++++.+.+++|++..+..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999887765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.047 Score=62.39 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 005178 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 487 (710)
...|++++|.++.+. ..+...|..+...+.+.|+++.|.+.|.++.+ |..+...|...|+.+..
T Consensus 663 l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHH
T ss_pred hhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHH
Confidence 445666666555322 23455666666666666666666666665532 22233334445555544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005178 488 VRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITC 528 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 528 (710)
.++-+.....|- ++....+|.+.|++++|++++..
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444433321 22233344455666666655544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0096 Score=61.97 Aligned_cols=86 Identities=8% Similarity=-0.152 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHc---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHHHHHHH
Q 005178 446 GGNVDNAIELFEEMSEL---GVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSID-----RG-VKPDD-RLCGCLLS 511 (710)
Q Consensus 446 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~~-~~~~~ll~ 511 (710)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++ .| -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667777766665541 11121 34566777777777777777777776653 12 12332 26777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005178 512 VVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 512 ~~~~~g~~~~a~~~~~~~~~ 531 (710)
.|...|++++|+.+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.12 Score=58.97 Aligned_cols=45 Identities=27% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 338 GKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERM 388 (710)
Q Consensus 338 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (710)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555543222 23445555555555555555555555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.022 Score=56.86 Aligned_cols=74 Identities=8% Similarity=0.042 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCG 507 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 507 (710)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 5788888888887887899999999999998865 7888888888888899999999999998887 456666654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.017 Score=60.24 Aligned_cols=102 Identities=3% Similarity=-0.091 Sum_probs=69.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCH-HH
Q 005178 440 LNIYGSGGNVDNAIELFEEMSEL---GVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDR-----G-VKPDD-RL 505 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~ 505 (710)
+.-+.+.|++++|..++++.++. -+.|+ ..+++.+...|...|++++|+.+++++++. | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455677888888888877652 11222 456788888888888888888888877631 2 22332 36
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-----hCCcHHHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCLQQ-----ANPKLVAFLN 541 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 541 (710)
++.|...|...|++++|+.+++++.+ ..|++..+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 77888888999999999998888765 3566655443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0029 Score=50.36 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDR-LCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
.+.+.|++++|+..|+++++.... +.. .+..+..+|...|++++|.+.|+++.+.+|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 344555555555555555543211 233 44455555555555555555555555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=61.18 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCccc
Q 005178 480 KARRIDDLVRVFGVSID---RGVKPD----DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFEN 552 (710)
Q Consensus 480 ~~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~ 552 (710)
..|++++|+.++++.++ .-+.|+ ..+++.|..+|...|++++|+.+++++..+. ...+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~------~~~lG-------- 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY------SKHYP-------- 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HHHSC--------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH------HHHcC--------
Confidence 46899999999998874 223343 2488899999999999999999998875420 00111
Q ss_pred HHHHHHHHHHhccCCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 553 IKEEFRNVIKDTEVDARRP-FCNCLIDICRNRNLNERAHELLYLGT 597 (710)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 597 (710)
+..|+.. .++.|+.+|...|++++|+.++++++
T Consensus 376 ------------~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 376 ------------VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1123322 68899999999999999999999885
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=46.76 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVM-GCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLC 516 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 516 (710)
.....+...|++++|...|+++.+.... +.. .|..+..+|...|++++|+..|++.++.... +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 3566788999999999999999886433 567 8999999999999999999999999975432 2222211
Q ss_pred CChHHHHHHHHHHHHhCC
Q 005178 517 ETSEDVGKVITCLQQANP 534 (710)
Q Consensus 517 g~~~~a~~~~~~~~~~~p 534 (710)
+.+.++...|++....+|
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 334556666655544444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.024 Score=45.69 Aligned_cols=78 Identities=8% Similarity=-0.085 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG------VKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
+..-+..|...+.+.|+++.|+..|+..++.- -.+...++..|..+|.+.|++++|..+++++.+++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566667777777777777777766421 123456788888888999999999999999999999887775
Q ss_pred HHHH
Q 005178 541 NLIE 544 (710)
Q Consensus 541 ~~L~ 544 (710)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.05 Score=56.63 Aligned_cols=89 Identities=12% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 005178 301 MFGESGDYDGIRYVLQEMKSLG---VQP----NLVVYNTLLEAMGKAGKPGLARSLFDEMVES-----G-LTP-DEKTLT 366 (710)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~ 366 (710)
.+.+.|++++|+.++++..+.. +.+ ...+++.|..+|...|++++|+.+++++++. | ..| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445556666666665555421 111 1234555666666666666666666655421 1 011 134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 005178 367 ALIKIYGKARWAKDALELWERMR 389 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~ 389 (710)
.|...|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.6 Score=44.67 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCh
Q 005178 449 VDNAIELFEEMSELGVAIN---VMGCTCLIQCLGKA-----RRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSL-CETS 519 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 519 (710)
...|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++. .|+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777888888874 455 56788888888884 9999999999999884332235666677777777 4889
Q ss_pred HHHHHHHHHHHHhCCcH
Q 005178 520 EDVGKVITCLQQANPKL 536 (710)
Q Consensus 520 ~~a~~~~~~~~~~~p~~ 536 (710)
+++.++++++....|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999887763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.084 Score=45.27 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 005178 413 VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG---NVDNAIELFEEMSELGVAI--NVMGCTCLIQCLGKARRIDDL 487 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 487 (710)
+..+++-|.+....+ .++..+...+..++++.+ ++++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666666655 477777777778888877 5668888888877754 13 345555666777888888888
Q ss_pred HHHHHHHHHCCCCCC
Q 005178 488 VRVFGVSIDRGVKPD 502 (710)
Q Consensus 488 ~~~~~~m~~~~~~p~ 502 (710)
.+.++.+++ +.|+
T Consensus 91 ~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHh--cCCC
Confidence 888888887 4554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.14 Score=48.99 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CC
Q 005178 413 VEEAERLFEDMKLSDYCKPD---NYSYTAMLNIYGS-----GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA-RR 483 (710)
Q Consensus 413 ~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~ 483 (710)
...|...+++..+.. |+ ...|..|...|.+ -|+.++|.+.|++.++.+..-+..++..+...++.. |+
T Consensus 179 l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 456667777776654 33 5577777777777 378888888888888754332467777777777774 78
Q ss_pred HHHHHHHHHHHHHCCCC--CCHHHHHH
Q 005178 484 IDDLVRVFGVSIDRGVK--PDDRLCGC 508 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~--p~~~~~~~ 508 (710)
.+++.+.+++.+..... |+....+.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 88888888888876666 66544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.072 Score=43.91 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHH
Q 005178 447 GNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD---LVRVFGVSIDRGVKP--DDRLCGCLLSVVSLCETSED 521 (710)
Q Consensus 447 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~ 521 (710)
..+..+.+-|.+....|. ++..+-..+..++.+....++ ++.+++.+...+ .| .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555556665555444 566776667777887777665 788888776643 23 22344456778889999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHH
Q 005178 522 VGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
|.++++.+.++.|++..+..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998877765543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.14 Score=39.98 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGN---VDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
.|...+..+..++...++ .++|..++++.++.+.. +......+...+.+.|++++|+..|+++++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444433322 45555555555553322 344444455555555555555555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.4 Score=38.76 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=22.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005178 234 RCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGV 284 (710)
Q Consensus 234 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 284 (710)
..|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 445555555554433 144455555555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=39.83 Aligned_cols=67 Identities=9% Similarity=-0.025 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 005178 395 MDFILYNTLLNMCADIGL---VEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG 463 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 463 (710)
.|...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456667777777665544 688888888888876 6778888888888888888888888888888754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.8 Score=37.81 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVA 465 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 465 (710)
..+..++.+...|+-++-.+++..+.... +|++.....+..+|.+.|+..+|.+++.++-+.|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 34445555666666666666666643322 456666666666666666666666666666665554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.74 Score=40.46 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=22.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 444 GSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGV 493 (710)
Q Consensus 444 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 493 (710)
...|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3445555555554443 1444555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.34 Score=38.69 Aligned_cols=65 Identities=6% Similarity=-0.085 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 432 DNYSYTAMLNIYGSGGNVDNAIELFEEMSELG------VAINVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+..-+..|...+...|++..|...|+.+.+.- -.+....+..+..+|.+.|+++.|+..++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445566667777777777777777765521 112456677777777777777777777777776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=2.3 Score=35.16 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=86.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 339 KAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAER 418 (710)
Q Consensus 339 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 418 (710)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356667777777766653 24444554544444444444445555444322 121 23445555444
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005178 419 LFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 498 (710)
.+-.+- .+.......++.....|.-|+-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.++-+.|
T Consensus 83 C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444432 3445556667778888888888888888644 355778888888888999999888888888888888
Q ss_pred CC
Q 005178 499 VK 500 (710)
Q Consensus 499 ~~ 500 (710)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.53 Score=39.82 Aligned_cols=109 Identities=8% Similarity=0.002 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCCcCH-HHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 005178 430 KPDNYSYTAMLNIYGSGGNV------DNAIELFEEMSELGVAINV-MGCTCLIQ------CLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 496 (710)
+.|..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...|. .+...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555666666665555666 6666666666553 33321 11111111 12345788899999998875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 497 RGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 497 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.+-+- ..+|......-.++|+...|.+++....+..|....++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 43332 66777777777789999999999999988888765444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.47 E-value=13 Score=42.14 Aligned_cols=192 Identities=9% Similarity=-0.043 Sum_probs=96.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHH
Q 005178 337 MGKAGKPGLARSLFDEMVESGLTPDE--KTLTALIKIYGKARWAKDALELWERMRENKW-------PMDFILYNTLLNMC 407 (710)
Q Consensus 337 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~li~~~ 407 (710)
....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44556667777666655432101222 2223333344555655667777766554311 01111222232233
Q ss_pred HHcCC-HHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 005178 408 ADIGL-VEEAERLFEDMKLSDYCKPDNY--SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI 484 (710)
Q Consensus 408 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 484 (710)
+..|. -+++.+.+..+.... ..... .-.+|...|.-.|+-+....++..+.+.. .-+..-+..+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33332 245566666655432 11111 12233444567788887788887776532 11222233344445577888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 485 DDLVRVFGVSIDRGVKPDDRLC--GCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 485 ~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+...
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 8888888887753 22222221 23445677888855555577776653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.44 Score=39.25 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHH
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN---AIELFEEMSELGVA-INVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~ 485 (710)
...+..+.+-|......+ .++..+--.+..++.+..+... ++.+++++.+.+.+ -.....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344555666666665555 4677777777777777776555 77777777765311 13344455666788888888
Q ss_pred HHHHHHHHHHHCCCCCC
Q 005178 486 DLVRVFGVSIDRGVKPD 502 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~ 502 (710)
+|.+.++.+++ +.|+
T Consensus 92 ~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHH--hCCC
Confidence 88888888877 4554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.77 E-value=10 Score=39.23 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCC--HHH
Q 005178 366 TALIKIYGKARWAKDALELWERMREN--KWPMD---FILYNTLLNMCADIGLVEEAERLFEDMKL---SDYCKPD--NYS 435 (710)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~ 435 (710)
..|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..++.++.. .....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34566666777777777777766421 11111 23455566677777777777777776532 1111222 234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 436 YTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
+..++..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666667777777777777776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.63 E-value=2.8 Score=35.46 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHHHccCCh------HHHHHHHHHHHHCCCCCCH----HHHHHH-HH--HHHHcCCHHHHHHHHHHHHH
Q 005178 184 PMETIFYNVTMKSLRFGRQF------QLIEQLANEMVSNEIELDN----ITYSTI-IT--CAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 184 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~----~~~~~l-i~--~~~~~g~~~~A~~~~~~m~~ 250 (710)
+.|..+|-..+..+-+.|++ ++..++|++.... ++|+. ..|-.+ |. .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777777777 7777777777653 34432 111111 11 12233566666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 005178 251 TGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287 (710)
Q Consensus 251 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 287 (710)
.+-.- ...|......-.+.|++..|.+++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 42222 5555555555566666666666666666554
|
| >3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.51 Score=35.68 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred hcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccchh--hHHHHHHHHhhhcCCCccccCCCCceEEe
Q 005178 615 LDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFSQ--GLATAFASHVNKLAAPFRQSEGKAGCFVA 692 (710)
Q Consensus 615 ~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~g~~~~ 692 (710)
.+++++....|..+++.|++.......... --.+..|.||.|.|+..- -++..|...|++-.-.|.+ .|.|++..
T Consensus 3 lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~-g~~~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~n~G~l~V 79 (82)
T 3fau_A 3 LDLHGLHVDEALEHLMRVLEKKTEEFKQNG-GKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLKV 79 (82)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCC---------CHHHHHHHHHHHTTCCEEE--EETTEEEE
T ss_pred EECCCCcHHHHHHHHHHHHHHHHHHhhccC-CceEEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceee--CCCEEEEE
Confidence 467888777777777777765433222111 123688999999998642 2789999999987766654 47798764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.83 E-value=4.1 Score=34.15 Aligned_cols=80 Identities=8% Similarity=-0.122 Sum_probs=59.4
Q ss_pred CcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARRI---DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLN 541 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 541 (710)
.|+..+--.+..++.+.... .+++.+++.+...+..-.......|.-++.+.|++++|.++.+.+.++.|++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56777777777788887764 468888888876432212334556777899999999999999999999999887765
Q ss_pred HHH
Q 005178 542 LIE 544 (710)
Q Consensus 542 ~L~ 544 (710)
+..
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.32 E-value=2.2 Score=35.30 Aligned_cols=82 Identities=9% Similarity=-0.100 Sum_probs=59.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHH
Q 005178 463 GVAINVMGCTCLIQCLGKARRI---DDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAF 539 (710)
Q Consensus 463 ~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 539 (710)
+-.|+..+--.+..++.+.... .+++.+++++...+..-....+..|.-++.+.|++++|.++.+.+.++.|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3456667666677777776654 4678888888765421123455667778889999999999999999999998877
Q ss_pred HHHHH
Q 005178 540 LNLIE 544 (710)
Q Consensus 540 ~~~L~ 544 (710)
..+..
T Consensus 115 ~~Lk~ 119 (134)
T 3o48_A 115 GALKS 119 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.01 E-value=1.6 Score=48.21 Aligned_cols=127 Identities=10% Similarity=0.113 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCC-CH
Q 005178 189 FYNVTMKSLRFGRQ-FQLIEQLANEMVSNEIELDNITY--STIITCAKRCN-LFDEAIEWFERMYKT------GLMP-DE 257 (710)
Q Consensus 189 ~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~ 257 (710)
.-..++..+...|+ .+.|..+|+++.... |....+ ..+|..+...+ .--+|++++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34556666666666 578999999988763 333222 23333333332 223566666555431 1111 11
Q ss_pred ----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005178 258 ----------VTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEM 318 (710)
Q Consensus 258 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 318 (710)
.....-...|...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122333455677899999999999988752 445778999999999999999999888876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=88.74 E-value=2.5e-05 Score=79.15 Aligned_cols=261 Identities=10% Similarity=0.013 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 292 PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKI 371 (710)
Q Consensus 292 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 371 (710)
+.+|..|..++.+.+++.+|++.|-+. -|+..|..+|.+..+.|.+++-..++...++.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345666666666666655555544221 133445566666666666666666655544432 222334456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHH
Q 005178 372 YGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDN 451 (710)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (710)
|++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTTSSSSSSCSGGGS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHHHHHHHHHHHHHH
Confidence 66666654432221 123444445566666666666666655555432 2223334455555554
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005178 452 AIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQ 531 (710)
Q Consensus 452 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 531 (710)
|.+.-++ .-+..||-.+-.+|...+.+.-|-..--.++- .|| ....++..|...|.+++.+.+++...+
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 4432221 13566777777777777777666544433332 122 123456667777888888888877777
Q ss_pred hCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCC----------hhhHHHHHHHHHhCCCHHHHH
Q 005178 532 ANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDAR----------RPFCNCLIDICRNRNLNERAH 590 (710)
Q Consensus 532 ~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~ 590 (710)
+..-+..+..-||-.+++- ..+...+.++..-...+ ...|.-|+-.|.+...++.|.
T Consensus 258 lErAHmGmFTELaILYsKY--~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LERAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp STTCCHHHHHHHHHHHHSS--CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCchhHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666666565544432 11222222222211111 125666777777777777653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=86.81 E-value=47 Score=37.62 Aligned_cols=261 Identities=10% Similarity=-0.060 Sum_probs=127.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 005178 302 FGESGDYDGIRYVLQEMKSLGVQPNLV--VYNTLLEAMGKAGKPGLARSLFDEMVESGL--T-----PDEKTLTALIKIY 372 (710)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~~~ 372 (710)
....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445666677766666554321012333 223344445556666678887777664310 0 1111222232233
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 373 GKARW-AKDALELWERMRENKWPMDFIL----YNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 373 ~~~g~-~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
+-.|. -+++.+.+..+.... +... -.+|...++-.|+-+....++..+.+.. ..+..-+..+.-++...|
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 32332 245555555555431 2221 1123333456678788888888776532 122222333344455788
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005178 448 NVDNAIELFEEMSELGVAINVMGC--TCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKV 525 (710)
Q Consensus 448 ~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 525 (710)
+.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888887763 11222211 234456777888776666888887532 22233222333344456665556666
Q ss_pred HHHHHH-hCCcHH-HHHHHHHhhcCCcccHHHHHHHHHHhccCCCChh
Q 005178 526 ITCLQQ-ANPKLV-AFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRP 571 (710)
Q Consensus 526 ~~~~~~-~~p~~~-~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 571 (710)
++.+.+ .+|..- .+.-.||.... |.-..++...+..+..++|..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~a--Gn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACA--GKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHccCCCHH
Confidence 554433 222211 12233343333 222344444555554444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.12 E-value=34 Score=35.31 Aligned_cols=93 Identities=9% Similarity=0.014 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCH--HH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSEL--GVAIN---VMGCTCLIQCLGKARRIDDLVRVFGVSI----DRGVKPDD--RL 505 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~--~~ 505 (710)
..|...|...|++.+|..++.++... |.... ...|...++.|...+++..|..+++++. .....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34445555555555555555554321 11111 2334444555555555555555555542 11111111 13
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 005178 506 CGCLLSVVSLCETSEDVGKVITCL 529 (710)
Q Consensus 506 ~~~ll~~~~~~g~~~~a~~~~~~~ 529 (710)
+.+.+..+.+.+++.+|-+.|.++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555556665555555444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.04 E-value=19 Score=33.90 Aligned_cols=117 Identities=10% Similarity=0.053 Sum_probs=78.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHH
Q 005178 476 QCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKE 555 (710)
Q Consensus 476 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~ 555 (710)
....+.|.+++|+.....-++.... |...-..|+..++-.|+++.|.+-++.+.+++|+......++.... ..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-----~aE 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-----KAA 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-----HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-----HHH
Confidence 3456789999999999888876433 6666678888999999999999999999999999876655543210 111
Q ss_pred HHHH-HHHh--ccCCC-Chh-hHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 005178 556 EFRN-VIKD--TEVDA-RRP-FCNCLIDICR--NRNLNERAHELLYLGTL 598 (710)
Q Consensus 556 ~a~~-~~~~--~~~~~-~~~-~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 598 (710)
..+. ++.. .+.-+ .+. -...|+.++. ..|+.++|.++-+++.+
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1222 2221 12111 122 3355666655 56999999988887753
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.81 E-value=3.2 Score=42.27 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 005178 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKS-----LGVQPNLVV 329 (710)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 329 (710)
.++..+...|++++|+..+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455555566666665555555432 34555566666666666666666666555433 255555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=3.7 Score=41.71 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
++..+...|+.++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555556665555555555444 4455555555555555555555555555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.58 E-value=30 Score=40.81 Aligned_cols=147 Identities=10% Similarity=-0.067 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--------------
Q 005178 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSD----Y-------------- 428 (710)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-------------- 428 (710)
.++..+.+.+..+.+.++..-. +.+......+..+|...|++++|.+.|.+....- .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666665544332 2255555566778888999999999997653210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 429 ---CKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN----VMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 429 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
...-..-|..++..+.+.|.++.+.++-..+++....-+ ...|..+..++...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 001123366777788888888888888777766422222 125788888888889999888888777765443
Q ss_pred CHHHHHHHHHHHHhcCChH
Q 005178 502 DDRLCGCLLSVVSLCETSE 520 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~ 520 (710)
......|+..++..|..+
T Consensus 971 -~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHhCCChh
Confidence 455666777677666643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.48 E-value=3.1 Score=46.01 Aligned_cols=30 Identities=17% Similarity=-0.185 Sum_probs=25.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 569 RRPFCNCLIDICRNRNLNERAHELLYLGTL 598 (710)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (710)
...-|..|+....+.+++++|.+.|...+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~ 641 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIV 641 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334699999999999999999999998763
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.74 E-value=33 Score=33.23 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 005178 326 NLVVYNTLLEAMGKAGKPGLARSLF 350 (710)
Q Consensus 326 ~~~~~~~li~~~~~~g~~~~A~~~~ 350 (710)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4445555666666666666655544
|
| >2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 | Back alignment and structure |
|---|
Probab=83.34 E-value=6.6 Score=30.47 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=54.2
Q ss_pred chhcccccChHHHHHHHHHHHHHHHHHHH--hccCCCCeeEEEeccCcccchh--hHHHHHHHHhhhcCCCccccCCCCc
Q 005178 613 WSLDVRSLSVGAAQTALEEWMWTLAKIVL--REEVLPQLFLAETGTGTHKFSQ--GLATAFASHVNKLAAPFRQSEGKAG 688 (710)
Q Consensus 613 w~~~~~~~~~G~~~~Al~~~~~~~~~~~~--~~~~~p~~~~i~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~g 688 (710)
...+++++....|..+++.|++....... .| -.++.|++|.|.|+... -++..|...|++....|. ..+.|
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g---~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~G 83 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGG---KPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPG 83 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTC---CSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTT
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCC---CeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCc
Confidence 34679999888888888888876543222 23 23689999999998652 368899999999877664 34678
Q ss_pred eEEe
Q 005178 689 CFVA 692 (710)
Q Consensus 689 ~~~~ 692 (710)
.++.
T Consensus 84 a~~V 87 (96)
T 2d9i_A 84 CLKV 87 (96)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.73 E-value=6.7 Score=30.49 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLN 405 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 405 (710)
+.-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++.+ +.....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455556666666666677777777777777777777777777666544 2222334544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 710 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-10 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 4e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 3e-10
Identities = 48/337 (14%), Positives = 101/337 (29%), Gaps = 15/337 (4%)
Query: 129 RKLNDCDNTEEAFLRAITEIPHQPTRENALLILNSLKFWQKSYFFFNWIKSQNLFPMETI 188
+ D + AI P A L ++ + L
Sbjct: 44 FQCRRLDRSAHFSTLAIK---QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Query: 189 FYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERM 248
+ + + + + + D + + + E +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 249 YKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPD-PIAFSVLGKMFGESGD 307
V +S + V+ G++ + +E+ V P+ A+ LG + E+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARI 218
Query: 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPD-EKTLT 366
+D SL + VV+ L + G LA + +E L P
Sbjct: 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYC 275
Query: 367 ALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLS 426
L + +A + + P N L N+ + G +EEA RL+
Sbjct: 276 NLANALKEKGSVAEAEDCYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 427 DYCKPDNY-SYTAMLNIYGSGGNVDNAIELFEEMSEL 462
P+ +++ + ++ G + A+ ++E +
Sbjct: 335 F---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 2e-06
Identities = 37/251 (14%), Positives = 72/251 (28%), Gaps = 12/251 (4%)
Query: 166 FWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDN--- 222
+ + V +L Q LA + LD
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203
Query: 223 ITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYER 282
Y + K +FD A+ + R + + VY + G ++ + Y R
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRR 262
Query: 283 GVASGWKPD-PIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341
+ +P P A+ L E G + N L + G
Sbjct: 263 AIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQG 319
Query: 342 KPGLARSLFDEMVESGLTPDE-KTLTALIKIYGKARWAKDALELWERMRENKWPMDFILY 400
A L+ + +E + P+ + L + + ++AL ++ P Y
Sbjct: 320 NIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAY 376
Query: 401 NTLLNMCADIG 411
+ + N ++
Sbjct: 377 SNMGNTLKEMQ 387
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 30/237 (12%), Positives = 80/237 (33%), Gaps = 11/237 (4%)
Query: 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASG 287
++ +++ EA ++ E+ K + D+ +E ++YER +++
Sbjct: 43 LLVLGHHPDIWYEAAQYLEQSSKL--------LAEKGDMNNAKLFSDEAANIYERAISTL 94
Query: 288 WKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLAR 347
K + + + Y+ + + + ++ +VY ++ +A R
Sbjct: 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154
Query: 348 SLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMC 407
+F + E T +TA + Y K + K+ ++
Sbjct: 155 MIFKKAREDARTRHHVYVTAALMEY-YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL 213
Query: 408 ADIGLVEEAERLFEDMKLSDYCKPDNYS--YTAMLNIYGSGGNVDNAIELFEEMSEL 462
+ + LFE + S P+ + L + G++ + +++ +
Sbjct: 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 710 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.46 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.51 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.26 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.14 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.11 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.03 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.27 | |
| d2d9ia1 | 83 | Nedd4-binding protein 2 {Human (Homo sapiens) [Tax | 93.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.27 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.83 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.46 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.9e-21 Score=197.69 Aligned_cols=369 Identities=14% Similarity=0.085 Sum_probs=180.3
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005178 164 LKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIE 243 (710)
Q Consensus 164 l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 243 (710)
.+++++|+..|+.+.+.. |.+..++..+..+|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|++
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 345555555555554442 3344555555555555555555555555555432 1134455555555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005178 244 WFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGV 323 (710)
Q Consensus 244 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (710)
.+....+.... +...+..........+....+........... .................+....+...+.......
T Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 89 HYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 55555544322 33333333333333444434333333333221 2233333344444445555555555555544432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005178 324 QPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTL 403 (710)
Q Consensus 324 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 403 (710)
+-+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|+..+++....+.. +...+..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 243 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHH
Confidence 1233444455555555555555555555554432 223444555555555555555555555555544222 34444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
...+.+.|++++|+..|++..+.. +.+..+|..+...|...|++++|...++...... +.+...+..+...+.+.|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCC
Confidence 555555555555555555555443 3444555555555555555555555555554432 1244455555555555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 484 IDDLVRVFGVSIDRGVKP-DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
+++|+..|++.++. .| +..++..+..+|.+.|++++|.+.|+++.+++|++..++..||.
T Consensus 321 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~ 381 (388)
T d1w3ba_ 321 IEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55555555555442 22 23344455555555555555555555555555555444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-20 Score=192.73 Aligned_cols=382 Identities=11% Similarity=0.070 Sum_probs=318.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005178 193 TMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGK 272 (710)
Q Consensus 193 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 272 (710)
+...+.+.|++++|++.|+++.+.. +-+...+..+..+|.+.|++++|+..|+++++.... +..+|..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 4556778999999999999998863 235778888888999999999999999999987543 68899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005178 273 VEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDE 352 (710)
Q Consensus 273 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 352 (710)
+++|+..+....+.. +.+...+..........+....+........... .................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 999999999998864 4455556666666666777777766666665543 23445555667777788899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCC
Q 005178 353 MVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPD 432 (710)
Q Consensus 353 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 432 (710)
..... +.+...+..+...+...|++++|...+.+..+.... +...+..+...+...|++++|...+.+..... +.+
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 236 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTC
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhH
Confidence 87653 445778888899999999999999999999886433 67889999999999999999999999999877 578
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005178 433 NYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSV 512 (710)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 512 (710)
...+..+...|.+.|++++|...|+++.+.... +..+|..+...|...|++++|+..++...... ..+...+..+..+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 889999999999999999999999999985433 67889999999999999999999999988653 3467788899999
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHH-HhccCCCChh-hHHHHHHHHHhCCC
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVI-KDTEVDARRP-FCNCLIDICRNRNL 585 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~-~~~~~~~~~~-~~~~l~~~~~~~g~ 585 (710)
+...|++++|++.|+++.+++|++..+...+|.++...|+. ++|...+ +.+...|+.+ +|..|+.+|.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL-QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988888854 4555555 4567788754 89999999999886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.1e-14 Score=141.34 Aligned_cols=282 Identities=12% Similarity=-0.006 Sum_probs=187.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 262 AILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341 (710)
Q Consensus 262 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (710)
.....+.+.|++++|+..|+++++.. +-+..+|..+..+|...|++++|...|++..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34555667777888888877777653 3346677777777777777777777777776643 225566777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFE 421 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 421 (710)
++++|.+.++++.... |+.............. .+.......+..+...+.+.+|.+.|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence 7777777777776542 2211110000000000 011111112233445566788888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 422 DMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 422 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+..+......+...+..+...+...|++++|+..|++....... +...|..+..+|.+.|++++|++.|+++++....
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 87765432456788889999999999999999999999876433 6788999999999999999999999999874322
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 005178 502 DDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTEVDARRPFCNCLIDICR 581 (710)
Q Consensus 502 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 581 (710)
+...|..+..+|.+.|++++|++.|+++.+++|++......++.. ...+|+.+..++.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~----------------------~~~~~~~l~~al~ 296 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM----------------------SENIWSTLRLALS 296 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC----------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH----------------------HHHHHHHHHHHHH
Confidence 456788899999999999999999999999988876544333221 1225666666666
Q ss_pred hCCCHHHHH
Q 005178 582 NRNLNERAH 590 (710)
Q Consensus 582 ~~g~~~~A~ 590 (710)
..|+.+.+.
T Consensus 297 ~~~~~d~~~ 305 (323)
T d1fcha_ 297 MLGQSDAYG 305 (323)
T ss_dssp HHTCGGGHH
T ss_pred HcCCHHHHH
Confidence 667665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.8e-12 Score=129.79 Aligned_cols=243 Identities=12% Similarity=-0.001 Sum_probs=181.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005178 228 IITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGD 307 (710)
Q Consensus 228 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 307 (710)
....+.+.|++++|+..|+++++.... +..+|..+..+|...|++++|+..|++.++.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 445788999999999999999987543 68899999999999999999999999998764 4467889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
+++|.+.+++..... |+............. ..+.......+..+...+.+.+|...|.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999998753 322111000000000 00001111122233445566777788777
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc
Q 005178 388 MRENKW-PMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI 466 (710)
Q Consensus 388 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 466 (710)
..+... ..+..++..+...+...|++++|+..|++..... +.+...|..+...|...|++++|...|+++++....
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 765432 2356778888888889999999999999888765 567888889999999999999999999998875432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
+..+|..+..+|.+.|++++|+..|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888899999999999999999998875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.7e-10 Score=111.73 Aligned_cols=179 Identities=7% Similarity=0.025 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 005178 364 TLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIG-LVEEAERLFEDMKLSDYCKPDNYSYTAMLNI 442 (710)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 442 (710)
.|+.+...+.+.+.+++|+++++++++.+.. +...|+....++...| ++++|+..++...+.. +.+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHH
Confidence 4444555556666666666666666665333 5556666666666654 3666776666666655 4566666666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 005178 443 YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET---- 518 (710)
Q Consensus 443 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---- 518 (710)
+...|++++|+..++++++.... +...|..+...+.+.|++++|+..|+++++.+.. +...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 77777777777777776664433 5666666666777777777777777776664322 44455555555544443
Q ss_pred --hHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 519 --SEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 519 --~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
+++|.+.+.++.+.+|++..++..++..+
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll 230 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGIL 230 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45677777777777777776665555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.1e-09 Score=104.91 Aligned_cols=198 Identities=8% Similarity=0.027 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005178 331 NTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKAR-WAKDALELWERMRENKWPMDFILYNTLLNMCAD 409 (710)
Q Consensus 331 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 409 (710)
+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++...+.... +..+|..+...+.+
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHh
Confidence 333334444444444444444444432 222334444444444433 244444444444443222 34444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC------
Q 005178 410 IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR------ 483 (710)
Q Consensus 410 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------ 483 (710)
.|++++|++.+.++.+.. +.+...|..+...+...|++++|+..++++++.++. +...|+.+...+.+.+.
T Consensus 125 l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 455555555555444443 344445555555555555555555555555443322 34444444444333333
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 484 IDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+++|+..+.++++.... +...|..+...+...| .+++.+.++.+.++.|+
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCC
Confidence 34455555554442211 3334444443333332 24455555555444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=2e-08 Score=100.56 Aligned_cols=203 Identities=10% Similarity=-0.089 Sum_probs=108.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVES----GLTPD---EKTLTALIKIYGKARWAKDALELWERMRENK----WPMDFI 398 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~ 398 (710)
+..+...+...|++..+...+.+.... +.... ...+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 334444555555555555555544321 11111 1233344455556666666666666554421 111233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCc---CHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDY-CKP----DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAI---NVMG 470 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~ 470 (710)
.+..+...+...++...+...+.+...... ... ....+..+...+...|++++|...+++..+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 444445555566666666666554433210 011 12234555566667777777777776665432221 2344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSID----RGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
+..+..++...|++++|...+++++. .+..|+. ..+..+..+|...|++++|.+.++++.++
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55566677777777777777776652 2333332 25666677777788888888777776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.8e-08 Score=99.34 Aligned_cols=271 Identities=9% Similarity=-0.003 Sum_probs=139.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMVSNEIELD----NITYSTIITCAKRCNLFDEAIEWFERMYKTGL-MPD----EVTY 260 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~ 260 (710)
......++...|++++|+.++++.++.....+ ...+..+..+|...|++++|+..|++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33345556777888888888887776522111 23455566677777888888877777654311 111 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 005178 261 SAILDVYAKSGKVEEVLSLYERGVAS----GWKPD---PIAFSVLGKMFGESGDYDGIRYVLQEMKSLG----VQPNLVV 329 (710)
Q Consensus 261 ~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~ 329 (710)
..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 55566667777777777776665431 11111 2234455566666677777776666665421 1112334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVES--GLTPD----EKTLTALIKIYGKARWAKDALELWERMRENKWPM---DFILY 400 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ 400 (710)
+..+...+...+++..+...+.+.... ..... ...+..+...+...|+++.|...+....+..... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444555556666666666665554431 10111 1223334444555556666655555544322111 12333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLS----DYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
..+..++...|++++|...+++.... +..+....++..+..+|...|++++|...+++..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555554321 1101112344445555555555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.1e-08 Score=100.67 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005178 344 GLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDM 423 (710)
Q Consensus 344 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 423 (710)
++|..+|++.++...+.+...|...+..+.+.|+.+.|..+|+++.+........+|...+..+.+.|+++.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33444444443322222333344444444444444444444444443322222233444444444444455555555444
Q ss_pred HhCCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 005178 424 KLSDYCKPDNYSYTAMLNI-YGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRG-VKP 501 (710)
Q Consensus 424 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p 501 (710)
.+.. +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|..++..+.+.|+++.|..+|++.+... ..|
T Consensus 161 l~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 4433 2223333222222 222345555555555554431 1234455555555555555555555555554332 222
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 502 D--DRLCGCLLSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 502 ~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
+ ...|...+..-...|+.+.+.++++++.+..|+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 1 234555555445555555555555555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.3e-08 Score=100.14 Aligned_cols=186 Identities=13% Similarity=0.054 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005178 308 YDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWER 387 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (710)
.++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+++.........|...+..+.+.|+.+.|.++|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555543333344455555555555666666666666655443222233555666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC
Q 005178 388 MRENKWPMDFILYNTLLNM-CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELG-VA 465 (710)
Q Consensus 388 m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 465 (710)
+.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+++.|..+|++.+... ..
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 6655332 33333333322 233467777777777777654 5567777777777777888888888888776643 23
Q ss_pred c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 466 I--NVMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 466 p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
| ....|...+..-..+|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 245677777777777888888888877764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=7.1e-10 Score=111.00 Aligned_cols=232 Identities=5% Similarity=-0.064 Sum_probs=153.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHH
Q 005178 304 ESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG--KPGLARSLFDEMVESGLTPDEKTLT-ALIKIYGKARWAKD 380 (710)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~ 380 (710)
..|++++|+.+++...+.. +-+...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+..++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3445677777777776643 335566666666666554 4677777777777653 33444443 33456666778888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005178 381 ALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMS 460 (710)
Q Consensus 381 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 460 (710)
|+..++.+.+.+.. +...|+.+..++.+.|++++|...+....+.. |+ ...+...+...+..+++...+....
T Consensus 163 Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 163 ELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888877776544 67777777778888887777665554443321 11 1123334455566677777777776
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 461 ELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 461 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.... ++...+..++..+...|+.++|+..+.+....... +...+..+..+|...|+.++|.++++++.+++|+...++
T Consensus 236 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 LGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 6433 24455666677777888888888888877653221 344677788888889999999999999999999888777
Q ss_pred HHHHhh
Q 005178 541 NLIEDN 546 (710)
Q Consensus 541 ~~L~~~ 546 (710)
..|+..
T Consensus 314 ~~L~~~ 319 (334)
T d1dcea1 314 DDLRSK 319 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=2.6e-08 Score=95.15 Aligned_cols=196 Identities=13% Similarity=0.005 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCL 478 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 478 (710)
+|..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|+++++.... +..+|..+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 45555666667777777777777766655 456667777777777777777777777777664332 455666666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH--HHHHHHhhcCCcccHHHH
Q 005178 479 GKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA--FLNLIEDNSTGFENIKEE 556 (710)
Q Consensus 479 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~L~~~~~~~~~~~~~ 556 (710)
...|++++|+..|++.++.... +......+..++.+.+..+.+..+........+.... ........ .......+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 193 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMER 193 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTS-SCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHH
Confidence 7777777777777776653321 2333333333344444444444444444444333221 11111111 111112222
Q ss_pred HHHHHHh-ccCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 557 FRNVIKD-TEVDAR-RPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 557 a~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+...... ....|+ ..+|..|+..|...|++++|.+.|++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2222111 111222 226778899999999999999999998743
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2e-08 Score=95.85 Aligned_cols=129 Identities=14% Similarity=-0.024 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005178 294 AFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYG 373 (710)
Q Consensus 294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 373 (710)
+|..+..+|.+.|++++|+..|++..+.. +-+..+|+.+..++.+.|++++|+..|+++++.. +.+..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 34444555555555555555555555432 2244455555555555555555555555555442 223344555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKL 425 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 425 (710)
..|++++|...|+...+.... +......+...+.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 555555555555555544221 333333333333444444444444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=3.6e-09 Score=105.69 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH----------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005178 307 DYDGIRYVLQEMKSLGVQPNL-VVYNTLLEA----------MGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKA 375 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 375 (710)
..++|+.++++..+. .|+. ..|+..-.. +...|++++|+.+++...+.. +.+...|..+..++...
T Consensus 44 ~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence 345666666666553 2332 233322222 233445677777777777653 34556666666666555
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 005178 376 R--WAKDALELWERMRENKWPMDFILYN-TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 376 g--~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (710)
+ ++++|+..+.++.+.... +...+. .....+...+..++|+..++.+.+.+ +-+...|+.+...+.+.|++++|
T Consensus 121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHH
Confidence 4 477888888877775333 444443 33455666777888888888777766 56777788888888887777776
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQA 532 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 532 (710)
...+....+. .|+ ...+...+...+..+++...+........ ++...+..+...+...|+.++|...+.+....
T Consensus 198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555444331 111 11223334556667777777777665432 22334445555666667777777777777777
Q ss_pred CCcHHHHHHHHHhhcCCcccHHHHHHHHHHh-ccCCCChh-hHHHHHHHHH
Q 005178 533 NPKLVAFLNLIEDNSTGFENIKEEFRNVIKD-TEVDARRP-FCNCLIDICR 581 (710)
Q Consensus 533 ~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~l~~~~~ 581 (710)
+|+...++..+|.++...| ..++|.+++++ +..+|+.. .|+.|...+.
T Consensus 272 ~p~~~~~~~~l~~~~~~~~-~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLL-YEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGG-GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 7777777777777666656 44555555443 45566433 5565554444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=4.4e-07 Score=74.24 Aligned_cols=106 Identities=11% Similarity=-0.006 Sum_probs=83.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005178 439 MLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCET 518 (710)
Q Consensus 439 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 518 (710)
-...+...|++++|+.+|.++++.... +...|..+..+|.+.|++++|+..+++.++.+.. +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 456677888888888888888875433 6777888888888888888888888888875433 56678888888888888
Q ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 519 SEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+++|+..|+++.+.+|++..+...++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888888888777766653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=1.3e-06 Score=84.54 Aligned_cols=200 Identities=11% Similarity=0.023 Sum_probs=120.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHH
Q 005178 334 LEAMGKAGKPGLARSLFDEMVES----GLTP-DEKTLTALIKIYGKARWAKDALELWERMRENKWP-----MDFILYNTL 403 (710)
Q Consensus 334 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~l 403 (710)
...|...|++++|.+.|.++.+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566777777777777766542 1111 1346677777777888888888777765542111 013345555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHhC----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-----H-HHH
Q 005178 404 LNMCAD-IGLVEEAERLFEDMKLS----DYCKP-DNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-----V-MGC 471 (710)
Q Consensus 404 i~~~~~-~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~-~~~ 471 (710)
...|.. .|++++|++.+.+..+. +. ++ ...++..+...|...|++++|..+|+++........ . ..+
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~-~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 556644 58888888888776542 11 11 134577788888888888888888888776432211 1 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCChHHHHHHHHHHHHhCC
Q 005178 472 TCLIQCLGKARRIDDLVRVFGVSIDRGVK-PD---DRLCGCLLSVVSL--CETSEDVGKVITCLQQANP 534 (710)
Q Consensus 472 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p 534 (710)
...+.++...|+++.|...++++.+.... ++ ......++.++.. .+.+++|++.|+.+.+++|
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 44555667788888888888887653211 11 2244556666655 2346677777666555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.5e-06 Score=76.65 Aligned_cols=127 Identities=9% Similarity=-0.058 Sum_probs=91.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
...+...|+++.|++.|.++. +++..+|..+..+|...|++++|+..|++.++.+.. +...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhcc
Confidence 334566777888877776542 566777777788888888888888888887775433 56677777777888888
Q ss_pred HHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcH
Q 005178 484 IDDLVRVFGVSIDRGV--------------KPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKL 536 (710)
Q Consensus 484 ~~~A~~~~~~m~~~~~--------------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 536 (710)
+++|+..|++.+...- .++ ..++..+..++...|++++|.+.++.+.++.|+.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888888777764211 111 2455667778889999999999999888887763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2.1e-06 Score=74.56 Aligned_cols=106 Identities=10% Similarity=-0.055 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005178 438 AMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE 517 (710)
Q Consensus 438 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 517 (710)
.....|.+.|++++|+..|+++++.... +...|..+..+|...|++++|+..|+++++.... +...|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 3456677888888888888888876543 6777888888888888888888888888874322 4467888888888888
Q ss_pred ChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 518 TSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
++++|...++++..++|++..+...++.
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~ 120 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQE 120 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8888888888888888887776655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.3e-06 Score=74.39 Aligned_cols=127 Identities=14% Similarity=0.015 Sum_probs=89.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC
Q 005178 369 IKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN 448 (710)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 448 (710)
...+...|+++.|++.|.++ .+++..+|..+..+|...|++++|++.|++..+.+ +.+...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhcc
Confidence 33456677777777777654 23466677777777778888888888888777766 5677777778888888888
Q ss_pred HHHHHHHHHHHHHcCC--------------Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005178 449 VDNAIELFEEMSELGV--------------AI-NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP 501 (710)
Q Consensus 449 ~~~A~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 501 (710)
+++|...|++.+.... .. ...++..+..+|.+.|++++|.+.|+..+.....+
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 8888877777764211 01 13556677788889999999999998887654443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.45 E-value=0.00043 Score=65.01 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 005178 259 TYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGDYDGIRYVLQEMKSL 321 (710)
Q Consensus 259 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 321 (710)
.+..|...+.+.+++++|++.|++..+.| +...+..|..+|.. ..++..|...+......
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 34444444445555555555555555443 33344444444433 33455555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=0.00086 Score=62.84 Aligned_cols=225 Identities=12% Similarity=0.100 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005178 291 DPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGK----AGKPGLARSLFDEMVESGLTPDEKTLT 366 (710)
Q Consensus 291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 366 (710)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45677778888889999999999999999876 66777778888776 568999999999988765 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 005178 367 ALIKIYGK----ARWAKDALELWERMRENKWPMDFILYNTLLNMCAD----IGLVEEAERLFEDMKLSDYCKPDNYSYTA 438 (710)
Q Consensus 367 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 438 (710)
.+...+.. ..+.+.|...++...+.|.. .....+...+.. ......+...+..... ..+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhh
Confidence 55554443 46789999999998887643 333334334433 4567788888888776 456778888
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005178 439 MLNIYGS----GGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGK----ARRIDDLVRVFGVSIDRGVKPDDRLCGCLL 510 (710)
Q Consensus 439 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 510 (710)
|...|.. ..+...+...++...+.| +......+...|.. ..++++|+..|++..+.| +...+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 8888875 567788888888888754 66666667766765 568999999999999876 566777777
Q ss_pred HHHHh----cCChHHHHHHHHHHHHhCC
Q 005178 511 SVVSL----CETSEDVGKVITCLQQANP 534 (710)
Q Consensus 511 ~~~~~----~g~~~~a~~~~~~~~~~~p 534 (710)
..|.+ ..+.++|.++|+++.....
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 77765 3478899999998866543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=5.4e-06 Score=79.99 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005178 190 YNVTMKSLRFGRQFQLIEQLANEMVSN----EIELD-NITYSTIITCAKRCNLFDEAIEWFERMYK 250 (710)
Q Consensus 190 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (710)
|.-....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|++.+++..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 344455666667777777776666542 11111 23555555566666666666666655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.1e-06 Score=72.14 Aligned_cols=108 Identities=17% Similarity=0.049 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRI---DDLVRVFGVSIDRGVKPDD-RLCGCLLSV 512 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~-~~~~~ll~~ 512 (710)
..+++.+...+++++|.+.|++.+..+.. +..++..+..++.+.++. ++|+.+|++++..+..|+. .++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34666677777778888888877775433 667777777777764443 4588888887765443332 256677888
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHh
Q 005178 513 VSLCETSEDVGKVITCLQQANPKLVAFLNLIED 545 (710)
Q Consensus 513 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~ 545 (710)
|.+.|++++|.+.|+++.+++|++..+..++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 888888888888888888888888777666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=9e-06 Score=66.11 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=68.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 005178 403 LLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKAR 482 (710)
Q Consensus 403 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 482 (710)
-...+.+.|++++|+.+|.+..+.. +.+...|..+..+|...|++++|+..+.++++.+.. +...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 3455667778888888887777765 567777777778888888888888888877776543 6677777777888888
Q ss_pred CHHHHHHHHHHHHHC
Q 005178 483 RIDDLVRVFGVSIDR 497 (710)
Q Consensus 483 ~~~~A~~~~~~m~~~ 497 (710)
++++|+..|++.++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877763
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=5.4e-06 Score=72.69 Aligned_cols=77 Identities=9% Similarity=-0.044 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.+|+.+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|+++.+++|++..+...|+.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46777888999999999999999999985422 677888999999999999999999999999999998888777664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.31 E-value=2.4e-06 Score=77.38 Aligned_cols=102 Identities=9% Similarity=-0.039 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKP-DDRLCGCL 509 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l 509 (710)
|+...+......|.+.|++++|+..|.++++.... +...|..+..+|.+.|++++|+..|+++++ +.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 44455555566666666666666666666654322 555666666666666666666666666654 333 34456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..+|...|++++|...|+++.++.|+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 66666666666666666666665553
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=1.3e-05 Score=69.32 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 005178 402 TLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKA 481 (710)
Q Consensus 402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 481 (710)
.....|.+.|++++|+..|.+..+.. +.+...|..+..+|...|++++|...|+++++.... +..+|..++.+|...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 34556778899999999999988877 678888999999999999999999999999886533 567888899999999
Q ss_pred CCHHHHHHHHHHHHHCC
Q 005178 482 RRIDDLVRVFGVSIDRG 498 (710)
Q Consensus 482 g~~~~A~~~~~~m~~~~ 498 (710)
|++++|+..|++.....
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999988743
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=8.9e-06 Score=73.43 Aligned_cols=99 Identities=14% Similarity=-0.035 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005178 395 MDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCL 474 (710)
Q Consensus 395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 474 (710)
|+...+......|.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..|+++++.... +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHH
Confidence 455556666777777888888888887777765 567777888888888888888888888887764322 46677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005178 475 IQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 475 i~~~~~~g~~~~A~~~~~~m~~ 496 (710)
..+|.+.|++++|+..|+++++
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9.3e-06 Score=66.32 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCcC-HHHHHHHHH
Q 005178 401 NTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGN---VDNAIELFEEMSELGVAIN-VMGCTCLIQ 476 (710)
Q Consensus 401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~ 476 (710)
..++..+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456777788888999999999888877 6788888888888877554 4568888888887554444 346778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 477 CLGKARRIDDLVRVFGVSIDRGVKPDDR 504 (710)
Q Consensus 477 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (710)
+|.+.|++++|++.|+++++ +.|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 89999999999999999887 456544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=4.3e-05 Score=65.35 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
.+|..+..+|.+.|++++|++.++++++.+.. +...|..+..++...|++++|...|+.+.+++|++..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46778889999999999999999999975422 667999999999999999999999999999999998887777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.09 E-value=1.8e-05 Score=63.70 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=47.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 005178 404 LNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARR 483 (710)
Q Consensus 404 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 483 (710)
...+.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|++++|+..|++.++.... +...|..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 334455555555555555555544 344555555555555555555555555555553322 35555555555555555
Q ss_pred HHHHHHHHHHH
Q 005178 484 IDDLVRVFGVS 494 (710)
Q Consensus 484 ~~~A~~~~~~m 494 (710)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0017 Score=62.34 Aligned_cols=282 Identities=12% Similarity=0.101 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005178 256 DEVTYSAILDVYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLE 335 (710)
Q Consensus 256 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 335 (710)
|..--..+.+.|.+.|.++.|..+|..+.. |.-++..|.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 333444455555566666666666654432 445555666666666666655443 14556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005178 336 AMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEE 415 (710)
Q Consensus 336 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 415 (710)
++.+......| .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.+. ++
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK 150 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH
Confidence 66655544332 1222222334444455666666666666666666655432 23355556666666665432 22
Q ss_pred HHHHHHHHHhCCCCCCCHH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 005178 416 AERLFEDMKLSDYCKPDNY----------SYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRID 485 (710)
Q Consensus 416 A~~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 485 (710)
-.+.+.... + ..|.. .|.-++-.|.+.|.++.|..+.- +. .++..-....+..+.+.++.+
T Consensus 151 l~e~l~~~s--~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 151 MREHLELFW--S--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp HHHHHHHHS--T--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHhcc--c--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChH
Confidence 222222211 1 11111 02333444444444444443321 11 122222333445556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCcccHHHHHHHHHHhcc
Q 005178 486 DLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGFENIKEEFRNVIKDTE 565 (710)
Q Consensus 486 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~~~~~~~a~~~~~~~~ 565 (710)
...++....++. .| ...+.++......-+..+.++.+++.. .+.-+..+++...
T Consensus 222 ~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~----------------------~l~li~p~Le~v~ 275 (336)
T d1b89a_ 222 LYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVK----------------------QLPLVKPYLRSVQ 275 (336)
T ss_dssp HHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTT----------------------CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcC----------------------CcHHHHHHHHHHH
Confidence 555555554442 23 233455555555555555555444321 1122223333322
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 005178 566 VDARRPFCNCLIDICRNRNLNERAHELLY 594 (710)
Q Consensus 566 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 594 (710)
......+.++|...|...++++.-++..+
T Consensus 276 ~~n~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 276 NHNNKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 23344588899999999999766554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.3e-05 Score=66.32 Aligned_cols=102 Identities=6% Similarity=-0.128 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhcCCc
Q 005178 471 CTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNSTGF 550 (710)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~~~~ 550 (710)
+..+...|.+.|++++|+..|++.++.+.. +...+..+..+|.+.|++++|++.++++.+++|+.......++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~----- 80 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK----- 80 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH-----
Confidence 445677788889999999999888875432 56788888889999999999999999888877765443333332
Q ss_pred ccHHHHHHHHHHhccCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 551 ENIKEEFRNVIKDTEVDARRPFCNCLIDICRNRNLNERAHELLYLGTLY 599 (710)
Q Consensus 551 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (710)
+|..++..+...|++++|++.|++++..
T Consensus 81 ---------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 81 ---------------------AYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp ---------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5668888999999999999999987643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=2.6e-05 Score=68.00 Aligned_cols=78 Identities=14% Similarity=-0.013 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhhc
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDNS 547 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~~ 547 (710)
..|+.+..+|.+.|++++|+..+++.+.... .+...|..+..+|...|++++|...|+.+.+++|++..+...++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhccc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3566678888999999999999999987543 25668888889999999999999999999999999888777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.96 E-value=4e-05 Score=61.49 Aligned_cols=89 Identities=12% Similarity=-0.083 Sum_probs=63.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCC
Q 005178 368 LIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGG 447 (710)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 447 (710)
+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 455566777777777777777765433 56777777777777777777777777777765 566777777777777777
Q ss_pred CHHHHHHHHHHH
Q 005178 448 NVDNAIELFEEM 459 (710)
Q Consensus 448 ~~~~A~~~~~~m 459 (710)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 777777777764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=8.3e-06 Score=85.24 Aligned_cols=109 Identities=6% Similarity=-0.125 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005178 431 PDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPD-DRLCGCL 509 (710)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 509 (710)
++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|++..+. .|+ ...|+.|
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~L 192 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQL 192 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHH
Confidence 334444555555555555555555554443311 1234444555555555555555555555542 222 2355555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHH
Q 005178 510 LSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIE 544 (710)
Q Consensus 510 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~ 544 (710)
...|...|+..+|...|.+...++|....+...|+
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 55555555555555555555555555555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00028 Score=61.24 Aligned_cols=75 Identities=12% Similarity=-0.075 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQ 476 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 476 (710)
+|+.+..+|.+.|++++|+..++...+.. |.+..+|..+..+|...|++++|...|+++.+..+. |......+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~ 138 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45556666777777777777777776665 456667777777777777777777777777664322 3444433333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.0072 Score=57.88 Aligned_cols=135 Identities=7% Similarity=0.079 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005178 186 ETIFYNVTMKSLRFGRQFQLIEQLANEMVSNEIELDNITYSTIITCAKRCNLFDEAIEWFERMYKTGLMPDEVTYSAILD 265 (710)
Q Consensus 186 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 265 (710)
|..--..+.+.|.+.|.++.|..+|..+.. |.-++.++.+.++++.|.+++.+. -+..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 333344455556666666666666654432 445556666666666666655433 15556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 005178 266 VYAKSGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAG 341 (710)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 341 (710)
++.+......| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 66665554332 1222222344445556666666666666666666665432 1345555666666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=8.1e-05 Score=61.30 Aligned_cols=98 Identities=11% Similarity=0.017 Sum_probs=54.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--C-HHHHHHHH
Q 005178 437 TAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGV---KP--D-DRLCGCLL 510 (710)
Q Consensus 437 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~-~~~~~~ll 510 (710)
-.+...|.+.|++++|+..|.+.++.+.. +...|..+..+|.+.|++++|+..++++++... .+ . ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 34455556666666666666666554332 455556666666666666666666666553110 00 0 12455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCc
Q 005178 511 SVVSLCETSEDVGKVITCLQQANPK 535 (710)
Q Consensus 511 ~~~~~~g~~~~a~~~~~~~~~~~p~ 535 (710)
..+...+++++|++.|++....+|+
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 6666666666666666666655554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.00011 Score=63.90 Aligned_cols=79 Identities=8% Similarity=-0.105 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 467 NVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 467 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|++++|...|+.+.+++|++..+...|..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777888999999999999999999875432 566888999999999999999999999999999998887777654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00078 Score=57.09 Aligned_cols=62 Identities=13% Similarity=-0.094 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
+|+.+..+|.+.|++++|++.++...+.+ +.+..+|..+..+|...|++++|+..|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555556666666666666666665554 455666666666666666666666666666553
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=1.9e-05 Score=82.40 Aligned_cols=109 Identities=11% Similarity=-0.088 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005178 329 VYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKWPMDFILYNTLLNMCA 408 (710)
Q Consensus 329 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 408 (710)
.+..+...+.+.|+.++|...+....... + ...+..+...+...|++++|+..|++..+.... +...|+.|...|.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34444444455555555554444433211 0 123344444445555555555555554443222 3344555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 409 DIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 409 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
..|+..+|...|.+..... +|...++..|...|
T Consensus 198 ~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK--FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHHHH
Confidence 5555555555555544443 34444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00051 Score=59.46 Aligned_cols=61 Identities=8% Similarity=-0.082 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSE 461 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 461 (710)
.|..+..+|.+.|++++|+..+.++.+.. +.+..+|..+..+|...|++++|+..|+++++
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555555555554443 34444555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00014 Score=61.32 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=57.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 005178 407 CADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 407 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 486 (710)
|-+.+.+++|++.|+...+.. |.+..++..+..+|...+++..+.. ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHH
Confidence 344555666666666666655 4556666666655553322211111 1122234
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHhCCcHHHHHHHHHhh
Q 005178 487 LVRVFGVSIDRGVKPDDRLCGCLLSVVSLCE-----------TSEDVGKVITCLQQANPKLVAFLNLIEDN 546 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~L~~~ 546 (710)
|+..|++.++.+.. +..+|..+..+|...| .+++|.+.|+++.+++|++..+...|+.+
T Consensus 60 Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 60 AITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence 44444444432111 2234444444443322 34677777888888888877777776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.51 E-value=0.00095 Score=57.59 Aligned_cols=62 Identities=11% Similarity=-0.025 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
+|+.+..+|.+.|++++|+..++...+.. +.+..+|..+..+|...|++++|...|+++++.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555666666777777777777666655 566666666667777777777777777776664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=9.9e-05 Score=69.14 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=85.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHH
Q 005178 408 ADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSELGVAIN-VMGCTCLIQCLGKARRIDD 486 (710)
Q Consensus 408 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 486 (710)
.+.|++++|+..+++..+.. |.|...+..+...|+..|++++|...|+...+.. |+ ...+..+...+...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 45789999999999998887 7888999999999999999999999999988843 43 4444444444444333333
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHH
Q 005178 487 LVRVFGVSIDRGVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVA 538 (710)
Q Consensus 487 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 538 (710)
+..-.......+ .|+ ...+......+...|+.++|...++++.+..|+...
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 322211111111 222 233444556677889999999999999988887543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0015 Score=56.90 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 399 LYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEM 459 (710)
Q Consensus 399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 459 (710)
.+..+...+...|++++|+..++++.+.. +-+...|..++.+|...|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44455555666666666666666665554 455566666666666666666666666555
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=0.0016 Score=56.58 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 005178 434 YSYTAMLNIYGSGGNVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSI-----DRGVKPDDRL 505 (710)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 505 (710)
..+..+...+...|++++|+..++++++.... +...|..++.+|.+.|+..+|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45666777777788888888888877775433 66777777888888888888887777764 3577776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=0.0006 Score=57.16 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=48.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 005178 374 KARWAKDALELWERMRENKWPMDFILYNTLLNMCAD----------IGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIY 443 (710)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 443 (710)
+.+.+++|+..|+...+.... +...+..+..+|.. .+.+++|+..|++..+.+ |.+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHHH
Confidence 334455555555555554322 44444444444442 234567777777777766 56777777777777
Q ss_pred HhCCC-----------HHHHHHHHHHHHH
Q 005178 444 GSGGN-----------VDNAIELFEEMSE 461 (710)
Q Consensus 444 ~~~g~-----------~~~A~~~~~~m~~ 461 (710)
...|+ +++|...|++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 65543 3455555555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.0014 Score=50.23 Aligned_cols=77 Identities=8% Similarity=-0.136 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHHHH
Q 005178 469 MGCTCLIQCLGKARRIDDLVRVFGVSIDR-----GVKPD-DRLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFLNL 542 (710)
Q Consensus 469 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (710)
..+-.+...+.+.|++++|+..|++.++. ...++ ..++..+..+|.+.|++++|+..++++.+++|++..+...
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445677777888888888888877642 11223 4578889999999999999999999999999999888776
Q ss_pred HHh
Q 005178 543 IED 545 (710)
Q Consensus 543 L~~ 545 (710)
++.
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.14 E-value=0.00037 Score=65.07 Aligned_cols=122 Identities=9% Similarity=-0.064 Sum_probs=79.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 005178 373 GKARWAKDALELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNA 452 (710)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (710)
.+.|++++|+..+++.++.... |...+..+...|+..|++++|.+.|+...+.. +.+...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence 3568888888888888877544 77888888888888888888888888888765 44555665555555433333322
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 453 IELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 453 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
..-.......+..++...+......+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 221111111111223344455566778889999999999988763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.11 E-value=0.0021 Score=54.49 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=59.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCC-c----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 005178 440 LNIYGSGGNVDNAIELFEEMSELGVA-I----------NVMGCTCLIQCLGKARRIDDLVRVFGVSIDR-----GVKPD- 502 (710)
Q Consensus 440 i~~~~~~g~~~~A~~~~~~m~~~~~~-p----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~- 502 (710)
...+...|++++|+..|++.++.... | ....|+.+..+|.+.|++++|+..+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445556666666666666542110 1 1345667777777777777777777776531 12222
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 005178 503 ----DRLCGCLLSVVSLCETSEDVGKVITCLQQANP 534 (710)
Q Consensus 503 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 534 (710)
...+..+..+|...|++++|...|+++.++.|
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12456677888889999999988888776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0073 Score=50.91 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=68.9
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Q 005178 399 LYNTL--LNMCADIGLVEEAERLFEDMKLSDYCKPD----------NYSYTAMLNIYGSGGNVDNAIELFEEMSEL---- 462 (710)
Q Consensus 399 ~~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 462 (710)
+|..+ ...+...|++++|++.|++..+...-.|+ ...|+.+..+|...|++++|...+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 44455668888888888877653211121 357888888999999999999888887652
Q ss_pred -CCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005178 463 -GVAIN-----VMGCTCLIQCLGKARRIDDLVRVFGVSID 496 (710)
Q Consensus 463 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 496 (710)
...++ ...|..+..+|...|++++|+..|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 23567788999999999999999998774
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.036 Score=41.76 Aligned_cols=63 Identities=8% Similarity=-0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005178 435 SYTAMLNIYGSGGNVDNAIELFEEMSEL-----GVAIN-VMGCTCLIQCLGKARRIDDLVRVFGVSIDR 497 (710)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 497 (710)
.+-.+...+.+.|++++|+..|++.++. ...++ ..++..+..+|.+.|++++|+..++++++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445666666777777777777666542 11112 456666777777777777777777777763
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.70 E-value=0.13 Score=41.26 Aligned_cols=15 Identities=13% Similarity=0.033 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHC
Q 005178 307 DYDGIRYVLQEMKSL 321 (710)
Q Consensus 307 ~~~~A~~~~~~m~~~ 321 (710)
+.++|.++|++..+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 344444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.49 E-value=0.17 Score=40.59 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 005178 236 NLFDEAIEWFERMYKTGLMPDEVTYSAILDVYAK----SGKVEEVLSLYERGVASGWKPDPIAFSVLGKMFGE----SGD 307 (710)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~ 307 (710)
.+.++|+++|++..+.| +...+..|...|.. ..+.++|.++|++..+.| ++.....|..+|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45566666666666554 44445555555543 235667777777766654 34444445555543 345
Q ss_pred HHHHHHHHHHHHHCC
Q 005178 308 YDGIRYVLQEMKSLG 322 (710)
Q Consensus 308 ~~~A~~~~~~m~~~g 322 (710)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.12 Score=40.34 Aligned_cols=79 Identities=8% Similarity=-0.143 Sum_probs=58.8
Q ss_pred CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcHHHHH
Q 005178 465 AINVMGCTCLIQCLGKARR---IDDLVRVFGVSIDRGVKPDD-RLCGCLLSVVSLCETSEDVGKVITCLQQANPKLVAFL 540 (710)
Q Consensus 465 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 540 (710)
.+...+--.+..++.+... .++++.+|+++...+. .+. ..+..|.-+|.+.|++++|.++++.+.+++|++..+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 4566666667777776644 5688999998886431 133 4666788889999999999999999999999988776
Q ss_pred HHHH
Q 005178 541 NLIE 544 (710)
Q Consensus 541 ~~L~ 544 (710)
.+..
T Consensus 111 ~L~~ 114 (124)
T d2pqrb1 111 ALKS 114 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.27 E-value=0.84 Score=35.15 Aligned_cols=140 Identities=15% Similarity=0.044 Sum_probs=74.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005178 303 GESGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDAL 382 (710)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 382 (710)
.-.|..++..+++.+.... .+..-||-+|--....-+.+...+.++.+-.. .|. ...+++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456666666666666552 34555555555555555555555555554321 111 0111222211
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 005178 383 ELWERMRENKWPMDFILYNTLLNMCADIGLVEEAERLFEDMKLSDYCKPDNYSYTAMLNIYGSGGNVDNAIELFEEMSEL 462 (710)
Q Consensus 383 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 462 (710)
.-+-.+- .+....+..++.+.+.|+-++-.+++.++.+.+ ++++.....+..+|.+.|...++..++.++-+.
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 1111111 123344455666667777777777777765544 566666667777777777777777777777666
Q ss_pred CCC
Q 005178 463 GVA 465 (710)
Q Consensus 463 ~~~ 465 (710)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: SMR domain-like family: Smr domain domain: Nedd4-binding protein 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.17 Score=36.64 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred hcccccChHHHHHHHHHHHHHHHHHHHhccCCCCeeEEEeccCcccch--hhHHHHHHHHhhhcCCCccccCCCCceEEe
Q 005178 615 LDVRSLSVGAAQTALEEWMWTLAKIVLREEVLPQLFLAETGTGTHKFS--QGLATAFASHVNKLAAPFRQSEGKAGCFVA 692 (710)
Q Consensus 615 ~~~~~~~~G~~~~Al~~~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~g~~~~ 692 (710)
.+++++....|.+++..|+......... ..-..+..|.||.|.|+-. .-++.+|...|++-.-.|.+ .|.|++..
T Consensus 4 iDLHG~~~~eA~~~l~~~l~~~~~~~~~-~~~~~~l~IItG~G~hS~~g~~~lk~~V~~~L~~~~~~~~e--~~~G~~~V 80 (83)
T d2d9ia1 4 LDLHGLHVDEALEHLMRVLEKKTEEFKQ-NGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLKV 80 (83)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEEC--CSTTCEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhhhh-cCCceEEEEEECCCCCCCCCcchHHHHHHHHHHHCCCceec--CCCcEEEE
Confidence 4678888888888887777754332221 2234568899999999864 23689999999987766654 46798875
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.61 E-value=1.7 Score=33.47 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005178 330 YNTLLEAMGKAGKPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMRENKW 393 (710)
Q Consensus 330 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 393 (710)
++.-++.+.++|+-++-.+++.++.+.+ +++....-.+..+|.+.|...++-+++.+.-++|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444444555555555555555544433 34444444455555555555555555555544443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=5.6 Score=38.80 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=20.9
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 005178 569 RRPFCNCLIDICRNRNLNERAHELLYLG 596 (710)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 596 (710)
+..-...+.....+.|.++.|+....++
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4445567778888999999998777653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.68 E-value=1.9 Score=33.33 Aligned_cols=73 Identities=5% Similarity=-0.110 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005178 430 KPDNYSYTAMLNIYGSGG---NVDNAIELFEEMSELGVAINVMGCTCLIQCLGKARRIDDLVRVFGVSIDRGVKPDDR 504 (710)
Q Consensus 430 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 504 (710)
.+...+--....++.++. ++++|+.+++++.+.+..-....+-.|..+|.+.|++++|.+.++.+++ +.|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 355666556666666553 4457888888877643221234566677778888888888888888877 455543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.83 E-value=15 Score=35.59 Aligned_cols=75 Identities=15% Similarity=-0.041 Sum_probs=40.3
Q ss_pred CHHHHHHHHhhCCCCCCHHHH----HHHHHhccCHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHccCChHHHHHHHHH
Q 005178 137 TEEAFLRAITEIPHQPTRENA----LLILNSLKFWQKSYFFFNWIKSQNLFPMETIFYNVTMKSLRFGRQFQLIEQLANE 212 (710)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~----~~~l~~l~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 212 (710)
+...+...|..+++.|....+ +..+..-.+|...+.++ ...+.+...-.....+....|+..+|...+..
T Consensus 54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~ 127 (450)
T d1qsaa1 54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (450)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666667776666554332 22333333454433322 11344555555566666777777777777666
Q ss_pred HHHCC
Q 005178 213 MVSNE 217 (710)
Q Consensus 213 m~~~g 217 (710)
+-..|
T Consensus 128 lW~~~ 132 (450)
T d1qsaa1 128 LWLTG 132 (450)
T ss_dssp HHSCS
T ss_pred HHhcC
Confidence 65544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.46 E-value=3.8 Score=29.75 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005178 342 KPGLARSLFDEMVESGLTPDEKTLTALIKIYGKARWAKDALELWERMREN 391 (710)
Q Consensus 342 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (710)
+.-+..+-+..+....+.|+.....+.+.+|.+.+++..|.++|+-++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666666677767777777777777777777777666543
|