Citrus Sinensis ID: 005193
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | 2.2.26 [Sep-21-2011] | |||||||
| Q5YLB4 | 731 | DNA gyrase subunit B, chl | N/A | no | 0.994 | 0.964 | 0.8 | 0.0 | |
| Q94BZ7 | 732 | DNA gyrase subunit B, mit | yes | no | 0.946 | 0.916 | 0.801 | 0.0 | |
| Q9SS38 | 730 | DNA gyrase subunit B, chl | no | no | 0.952 | 0.924 | 0.798 | 0.0 | |
| Q5NBJ3 | 729 | DNA gyrase subunit B, chl | yes | no | 0.928 | 0.902 | 0.773 | 0.0 | |
| P77993 | 636 | DNA gyrase subunit B OS=T | yes | no | 0.868 | 0.968 | 0.513 | 0.0 | |
| P94604 | 637 | DNA gyrase subunit B OS=C | yes | no | 0.871 | 0.970 | 0.513 | 0.0 | |
| P05652 | 638 | DNA gyrase subunit B OS=B | yes | no | 0.874 | 0.971 | 0.507 | 0.0 | |
| O50627 | 637 | DNA gyrase subunit B OS=B | yes | no | 0.874 | 0.973 | 0.512 | 1e-178 | |
| Q8CQK4 | 643 | DNA gyrase subunit B OS=S | yes | no | 0.877 | 0.967 | 0.520 | 1e-176 | |
| Q5HK03 | 643 | DNA gyrase subunit B OS=S | yes | no | 0.877 | 0.967 | 0.520 | 1e-176 |
| >sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1 | Back alignment and function desciption |
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Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/730 (80%), Positives = 642/730 (87%), Gaps = 25/730 (3%)
Query: 4 LLLKAPYLHIRVLMASRCFC---------SFSS------SLFFKPRTNFAIRGVSSQVLT 48
LL P H MASR SFSS S+ PR +R +S +L
Sbjct: 3 LLKPFPLQHSLRCMASRFLLHSHYHTHTLSFSSISLSRPSIVLNPRVINKLRRLSDAILI 62
Query: 49 RSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLH 108
R N+V RAF+SSS TEAF+EN SK YGSEQIQVLEGL+ VRKRP MYIGSTGPRGLH
Sbjct: 63 R-NMVSLRAFMSSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLH 121
Query: 109 HLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHPATNKSALETVLTV 159
HLVYEILDNAVDEAQAG+A+ I+V L ADNS IP +LHP T KS+LETVLTV
Sbjct: 122 HLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTV 181
Query: 160 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT 219
LHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY QKYSRGKP+TTL
Sbjct: 182 LHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLI 241
Query: 220 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 279
CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP+LTIAL+KED D
Sbjct: 242 CHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDID 301
Query: 280 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTML 339
PEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+ALQWCSDAYSDTML
Sbjct: 302 PEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTML 361
Query: 340 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 399
GYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHVREGLTC+ISV+V
Sbjct: 362 GYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKV 421
Query: 400 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 459
PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL+ALKAALAAKR
Sbjct: 422 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKR 481
Query: 460 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLR 519
AR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQGRDRRFQAILPLR
Sbjct: 482 ARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLR 541
Query: 520 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 579
GKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR
Sbjct: 542 GKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 601
Query: 580 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 639
TLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAELKKV+ SFPSNA Y+I
Sbjct: 602 TLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNASYNI 661
Query: 640 QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAA 699
QRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSLMG+RVD RK+LIQN+A
Sbjct: 662 QRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSRVDIRKQLIQNSA 721
Query: 700 NLVNLDHLDI 709
+++NL+ LDI
Sbjct: 722 SMMNLEQLDI 731
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Seems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. Nicotiana benthamiana (taxid: 4100) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana GN=GYRBM PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana GN=GYRBC PE=2 SV=3 | Back alignment and function description |
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| >sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GYRB PE=2 SV=1 | Back alignment and function description |
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| >sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2 | Back alignment and function description |
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| >sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB PE=3 SV=2 | Back alignment and function description |
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| >sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gyrB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| 255562314 | 732 | DNA gyrase subunit B, putative [Ricinus | 0.976 | 0.945 | 0.823 | 0.0 | |
| 297739950 | 707 | unnamed protein product [Vitis vinifera] | 0.976 | 0.978 | 0.817 | 0.0 | |
| 225441215 | 719 | PREDICTED: DNA gyrase subunit B, chlorop | 0.987 | 0.973 | 0.800 | 0.0 | |
| 356504692 | 726 | PREDICTED: DNA gyrase subunit B, chlorop | 0.998 | 0.975 | 0.779 | 0.0 | |
| 75288399 | 731 | RecName: Full=DNA gyrase subunit B, chlo | 0.994 | 0.964 | 0.8 | 0.0 | |
| 224139720 | 700 | predicted protein [Populus trichocarpa] | 0.949 | 0.961 | 0.808 | 0.0 | |
| 356571931 | 724 | PREDICTED: DNA gyrase subunit B, chlorop | 0.968 | 0.948 | 0.793 | 0.0 | |
| 224086827 | 653 | predicted protein [Populus trichocarpa] | 0.908 | 0.986 | 0.839 | 0.0 | |
| 297810505 | 729 | hypothetical protein ARALYDRAFT_487191 [ | 0.987 | 0.960 | 0.768 | 0.0 | |
| 18414465 | 732 | DNA gyrase subunit B [Arabidopsis thalia | 0.946 | 0.916 | 0.801 | 0.0 |
| >gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis] gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/703 (82%), Positives = 637/703 (90%), Gaps = 11/703 (1%)
Query: 17 MASRCFCSFSSSLF-FKPRTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSK 75
+ + F S S L FKPR +F R V+S+V T N RAF+SSS ATE F+E+ SK
Sbjct: 31 LHCQSFSSLSRPLVSFKPRVSFQWRAVTSRV-TVQNAGSARAFMSSSTATEPFQESASSK 89
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
YGS+QIQVL+GLE VRKRP MYIGSTGPRGLHHLVYEILDNA+DEAQAGYAS ++V L
Sbjct: 90 AYGSDQIQVLKGLEPVRKRPGMYIGSTGPRGLHHLVYEILDNAIDEAQAGYASRVDVILH 149
Query: 136 ADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
+DNS IP DLHP T KSALETVLTVLHAGGKFGGS+SGYSVSGGLHGVGLSV
Sbjct: 150 SDNSVSISDNGRGIPTDLHPVTKKSALETVLTVLHAGGKFGGSNSGYSVSGGLHGVGLSV 209
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALSE LEVTVWRDGMEY Q+YSRG PVT L CH L V+S+DRQGT +RFWPDK+VFTT
Sbjct: 210 VNALSEGLEVTVWRDGMEYRQRYSRGNPVTILMCHSLAVESRDRQGTCVRFWPDKEVFTT 269
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
AI+FD+NTIAGR+RELAFLNPKLTI L+KED+DPEKNQY+EYF+AGGL EYV+WLNTDKK
Sbjct: 270 AIEFDYNTIAGRVRELAFLNPKLTITLKKEDNDPEKNQYDEYFYAGGLIEYVKWLNTDKK 329
Query: 307 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 366
PLHDVVGF K++DGITID+ALQWCSDAYSDT+LGYANSIRTIDGGTHI+G KASLTRTLN
Sbjct: 330 PLHDVVGFGKEIDGITIDMALQWCSDAYSDTILGYANSIRTIDGGTHIDGFKASLTRTLN 389
Query: 367 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 426
SLGKKSK +K+KDI+LSGEHVREGLTCI+SV+VP+PEFEGQTKTRLGNPEVRKVVDQSVQ
Sbjct: 390 SLGKKSKIIKEKDINLSGEHVREGLTCIVSVKVPSPEFEGQTKTRLGNPEVRKVVDQSVQ 449
Query: 427 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTT 486
EYLTEYLELHPDVLDSILSKSL+ALKAALAAK+AR+LVRQKSVLR+SSLPGKLADCSST
Sbjct: 450 EYLTEYLELHPDVLDSILSKSLNALKAALAAKKARELVRQKSVLRTSSLPGKLADCSSTN 509
Query: 487 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 546
PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI L
Sbjct: 510 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGL 569
Query: 547 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 606
GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF+RYQK LF+EGCIYVGVPPL
Sbjct: 570 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQKALFEEGCIYVGVPPL 629
Query: 607 YKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLK 666
YKVERGKQV YCYD+AELKK++SSFP NA Y+IQRFKGLGEMMP+QLWETT++PEQR+LK
Sbjct: 630 YKVERGKQVYYCYDEAELKKLRSSFPQNASYNIQRFKGLGEMMPLQLWETTMDPEQRLLK 689
Query: 667 QLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 709
QLV+EDAAEANVVFSSLMGARVD RKELIQ++A VN+D LDI
Sbjct: 690 QLVVEDAAEANVVFSSLMGARVDVRKELIQSSARAVNIDLLDI 732
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225441215|ref|XP_002266668.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356504692|ref|XP_003521129.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|75288399|sp|Q5YLB4.1|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana] | Back alignment and taxonomy information |
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| >gi|224139720|ref|XP_002323244.1| predicted protein [Populus trichocarpa] gi|222867874|gb|EEF05005.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356571931|ref|XP_003554124.1| PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa] gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18414465|ref|NP_568133.1| DNA gyrase subunit B [Arabidopsis thaliana] gi|75165162|sp|Q94BZ7.1|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana] gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana] gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 709 | ||||||
| TAIR|locus:2146698 | 732 | GYRB2 "DNA GYRASE B2" [Arabido | 0.946 | 0.916 | 0.738 | 1.6e-269 | |
| UNIPROTKB|Q5NBJ3 | 729 | GYRB "DNA gyrase subunit B, ch | 0.952 | 0.925 | 0.693 | 1.1e-254 | |
| UNIPROTKB|Q7NHM9 | 644 | gyrB "DNA gyrase subunit B" [G | 0.888 | 0.978 | 0.536 | 2.7e-178 | |
| UNIPROTKB|A8IIG8 | 649 | TOP3 "DNA gyrase subunit B-lik | 0.882 | 0.964 | 0.515 | 1.5e-163 | |
| TIGR_CMR|CHY_2705 | 635 | CHY_2705 "DNA gyrase, B subuni | 0.867 | 0.968 | 0.486 | 8e-156 | |
| UNIPROTKB|P05652 | 638 | gyrB "DNA gyrase subunit B" [B | 0.874 | 0.971 | 0.458 | 2.3e-149 | |
| UNIPROTKB|Q8TQG0 | 634 | gyrB "DNA gyrase subunit B" [M | 0.871 | 0.974 | 0.481 | 5.5e-148 | |
| TIGR_CMR|BA_0005 | 640 | BA_0005 "DNA gyrase, B subunit | 0.870 | 0.964 | 0.469 | 9e-148 | |
| UNIPROTKB|P77993 | 636 | gyrB "DNA gyrase subunit B" [T | 0.867 | 0.966 | 0.471 | 2.4e-147 | |
| UNIPROTKB|O67137 | 792 | gyrB "DNA gyrase subunit B" [A | 0.871 | 0.780 | 0.421 | 8e-142 |
| TAIR|locus:2146698 GYRB2 "DNA GYRASE B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2592 (917.5 bits), Expect = 1.6e-269, P = 1.6e-269
Identities = 506/685 (73%), Positives = 560/685 (81%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDL 144
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD S IP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 145 HPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGME 204
HPAT KS+LETVLTVLHA NALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 205 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 264
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 265 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 324
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 325 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 384
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 385 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 444
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 445 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 504
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 505 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 564
KQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHK
Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587
Query: 565 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 624
IIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+L
Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADL 647
Query: 625 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 684
KK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLM
Sbjct: 648 KKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLM 707
Query: 685 GARVDTRKELIQNAANLVNLDHLDI 709
GARVD RKELI+NAA +NL LDI
Sbjct: 708 GARVDVRKELIKNAATRINLQRLDI 732
|
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| UNIPROTKB|Q5NBJ3 GYRB "DNA gyrase subunit B, chloroplastic/mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7NHM9 gyrB "DNA gyrase subunit B" [Gloeobacter violaceus PCC 7421 (taxid:251221)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A8IIG8 TOP3 "DNA gyrase subunit B-like protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2705 CHY_2705 "DNA gyrase, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P05652 gyrB "DNA gyrase subunit B" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8TQG0 gyrB "DNA gyrase subunit B" [Methanosarcina acetivorans C2A (taxid:188937)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_0005 BA_0005 "DNA gyrase, B subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P77993 gyrB "DNA gyrase subunit B" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O67137 gyrB "DNA gyrase subunit B" [Aquifex aeolicus VF5 (taxid:224324)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C5C5 | GYRB_MYCTU | 5, ., 9, 9, ., 1, ., 3 | 0.4480 | 0.8716 | 0.9155 | yes | no |
| P47249 | GYRB_MYCGE | 5, ., 9, 9, ., 1, ., 3 | 0.4567 | 0.8829 | 0.9630 | yes | no |
| P0A4M0 | GYRB_STRR6 | 5, ., 9, 9, ., 1, ., 3 | 0.4711 | 0.8871 | 0.9706 | yes | no |
| Q9ZAQ6 | GYRB_MYCAT | 5, ., 9, 9, ., 1, ., 3 | 0.4796 | 0.8222 | 0.9137 | yes | no |
| P22447 | GYRB_MYCPN | 5, ., 9, 9, ., 1, ., 3 | 0.4552 | 0.8829 | 0.9630 | yes | no |
| Q9ZFK1 | GYRB_BORHE | 5, ., 9, 9, ., 1, ., 3 | 0.4712 | 0.8730 | 0.9763 | yes | no |
| P77993 | GYRB_THEMA | 5, ., 9, 9, ., 1, ., 3 | 0.5138 | 0.8688 | 0.9685 | yes | no |
| Q9X3Y6 | GYRB_BACAN | 5, ., 9, 9, ., 1, ., 3 | 0.5054 | 0.8702 | 0.9640 | yes | no |
| P21558 | GYRB_HALL2 | 5, ., 9, 9, ., 1, ., 3 | 0.5023 | 0.8674 | 0.9624 | N/A | no |
| Q5HK03 | GYRB_STAEQ | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8772 | 0.9673 | yes | no |
| Q9SS38 | GYRBP_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.7988 | 0.9520 | 0.9246 | no | no |
| P33769 | GYRB_BORBU | 5, ., 9, 9, ., 1, ., 3 | 0.4814 | 0.8660 | 0.9684 | yes | no |
| P05652 | GYRB_BACSU | 5, ., 9, 9, ., 1, ., 3 | 0.5070 | 0.8744 | 0.9717 | yes | no |
| O08399 | GYRB_TREPA | 5, ., 9, 9, ., 1, ., 3 | 0.4946 | 0.8631 | 0.9607 | yes | no |
| Q6GD85 | GYRB_STAAS | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| Q8CQK4 | GYRB_STAES | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8772 | 0.9673 | yes | no |
| Q5YLB4 | GYRB_NICBE | 5, ., 9, 9, ., 1, ., 3 | 0.8 | 0.9943 | 0.9644 | N/A | no |
| P0DG05 | GYRB_STRPQ | 5, ., 9, 9, ., 1, ., 3 | 0.4806 | 0.8758 | 0.9553 | yes | no |
| P43053 | GYRB_MYCHP | 5, ., 9, 9, ., 1, ., 3 | 0.4585 | 0.8744 | 0.9567 | yes | no |
| P0A4L9 | GYRB_STRPN | 5, ., 9, 9, ., 1, ., 3 | 0.4711 | 0.8871 | 0.9706 | yes | no |
| P0A0K7 | GYRB_STAAW | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| P0A0K8 | GYRB_STAAU | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| O50627 | GYRB_BACHD | 5, ., 9, 9, ., 1, ., 3 | 0.5124 | 0.8744 | 0.9733 | yes | no |
| P66936 | GYRB_STAAM | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| P66937 | GYRB_STAAN | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| P47720 | GYRB_MYCGA | 5, ., 9, 9, ., 1, ., 3 | 0.4620 | 0.8772 | 0.9598 | yes | no |
| O29720 | GYRB_ARCFU | 5, ., 9, 9, ., 1, ., 3 | 0.4882 | 0.8631 | 0.9683 | yes | no |
| Q2FKQ1 | GYRB_STAA3 | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | N/A | no |
| A5TY73 | GYRB_MYCTA | 5, ., 9, 9, ., 1, ., 3 | 0.4480 | 0.8716 | 0.9155 | yes | no |
| D4GZ01 | GYRB_HALVD | 5, ., 9, 9, ., 1, ., 3 | 0.5055 | 0.8674 | 0.9624 | yes | no |
| O87545 | GYRB_TREDE | 5, ., 9, 9, ., 1, ., 3 | 0.4798 | 0.8730 | 0.9702 | yes | no |
| Q5NBJ3 | GYRB_ORYSJ | 5, ., 9, 9, ., 1, ., 3 | 0.7739 | 0.9280 | 0.9026 | yes | no |
| P94604 | GYRB_CLOAB | 5, ., 9, 9, ., 1, ., 3 | 0.5139 | 0.8716 | 0.9701 | yes | no |
| Q6GKU0 | GYRB_STAAR | 5, ., 9, 9, ., 1, ., 3 | 0.5202 | 0.8787 | 0.9673 | yes | no |
| Q5HJZ1 | GYRB_STAAC | 5, ., 9, 9, ., 1, ., 3 | 0.5186 | 0.8787 | 0.9673 | yes | no |
| Q94BZ7 | GYRBM_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.8014 | 0.9464 | 0.9166 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | 0.979 |
| 3rd Layer | 5.99.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00160301 | hypothetical protein (700 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | fgenesh4_pm.C_LG_X000986 | • | • | • | • | • | 0.988 | ||||
 | fgenesh4_pg.C_scaffold_18720000001 | • | • | 0.839 | |||||||
 | fgenesh4_pg.C_scaffold_1424000002 | • | 0.768 | ||||||||
 | eugene3.00020856 | • | • | 0.756 | |||||||
 | estExt_Genewise1_v1.C_LG_III0383 | • | 0.663 | ||||||||
 | gw1.XI.1444.1 | • | • | 0.661 | |||||||
 | eugene3.29520003 | • | 0.644 | ||||||||
 | grail3.3134000101 | • | 0.625 | ||||||||
 | estExt_Genewise1_v1.C_LG_X6520 | • | 0.619 | ||||||||
 | gw1.X.1153.1 | • | • | • | 0.615 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 709 | |||
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 0.0 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ | 0.0 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 0.0 | |
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B | 0.0 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 0.0 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 0.0 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu | 0.0 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 0.0 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu | 1e-154 | |
| cd00822 | 172 | cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN | 6e-74 | |
| cd03366 | 114 | cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: | 4e-72 | |
| cd01030 | 115 | cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: | 5e-66 | |
| pfam00204 | 173 | pfam00204, DNA_gyraseB, DNA gyrase B | 4e-61 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; | 3e-58 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 4e-41 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 2e-36 | |
| pfam00986 | 65 | pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, ca | 2e-29 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 2e-27 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 7e-23 | |
| cd03365 | 120 | cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome | 1e-21 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 2e-18 | |
| pfam01751 | 86 | pfam01751, Toprim, Toprim domain | 4e-18 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 3e-15 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 1e-10 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 2e-09 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 9e-08 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 4e-07 | |
| cd03481 | 153 | cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc | 5e-04 |
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
Score = 1043 bits (2699), Expect = 0.0
Identities = 369/649 (56%), Positives = 471/649 (72%), Gaps = 25/649 (3%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASN 129
+ ++ Y + QIQVLEGLEAVRKRP MYIGSTG RGLHHLVYEI+DN++DEA AGY +
Sbjct: 1 KEEKAQEYDASQIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDH 60
Query: 130 IEVALLADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLH 180
IEV + D S IP+D+HP T K A+E VLTVLHAGGKFGG GY VSGGLH
Sbjct: 61 IEVTINEDGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG--GYKVSGGLH 118
Query: 181 GVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240
GVG+SVVNALS LEV V RDG Y+Q+Y RG PVT L + D GT + F PD
Sbjct: 119 GVGVSVVNALSTWLEVEVKRDGKIYYQEYERGVPVTPLEV----IGETDETGTTVTFKPD 174
Query: 241 KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW 300
++F T +FD++T+A R+RELAFLN L I L D + + + + GG++EYV++
Sbjct: 175 PEIFET-TEFDYDTLATRLRELAFLNKGLKITLT--DEREGEEKEETFHYEGGIKEYVEY 231
Query: 301 LNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 359
LN +K+PLH + + F + DGI +++A+Q+ D YS+ +L +AN+I T +GGTH EG K
Sbjct: 232 LNRNKEPLHEEPIYFEGEKDGIEVEVAMQYN-DGYSENILSFANNINTHEGGTHEEGFKT 290
Query: 360 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 419
+LTR +N +K+K +K+KD +L+GE VREGLT +ISV+ P P+FEGQTKT+LGN EVR
Sbjct: 291 ALTRVINDYARKNKLLKEKDDNLTGEDVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRG 350
Query: 420 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKL 479
+VD V E L+E+LE +P+V I+ K++ A +A AA++AR+L R+KS L SSSLPGKL
Sbjct: 351 IVDSVVSEALSEFLEENPNVAKKIVEKAILAARAREAARKARELTRRKSALESSSLPGKL 410
Query: 480 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 539
ADCSS PEESE++IVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+ + KNEEI
Sbjct: 411 ADCSSKDPEESELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEI 470
Query: 540 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 599
+ LI ALG G+ G+DF LRYHKIII+TDADVDGAHIRTLLLTFFYRY + L + G +
Sbjct: 471 RALITALGTGI-GDDFDISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYV 529
Query: 600 YVGVPPLYKVERGKQVQYCYDDAELKKVKSSFP--SNALYSIQRFKGLGEMMPVQLWETT 657
Y+ PPLYK+++G + +Y Y D EL ++ + N Y IQR+KGLGEM P QLWETT
Sbjct: 530 YIAQPPLYKIKKGGK-EYAYSDEELDEILAELKLKGNPKYGIQRYKGLGEMNPEQLWETT 588
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
++PE R L Q+ IEDAAEA+ +FS LMG V+ R+E I+ NA + NLD
Sbjct: 589 MDPETRTLLQVTIEDAAEADEIFSILMGDDVEPRREFIEENAKYVRNLD 637
|
Length = 638 |
| >gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|201537 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216679 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 100.0 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 100.0 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 100.0 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 100.0 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 100.0 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 100.0 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 100.0 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 100.0 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 100.0 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 100.0 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 100.0 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 100.0 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 100.0 | |
| cd03366 | 114 | TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome | 100.0 | |
| cd01030 | 115 | TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome | 100.0 | |
| cd03365 | 120 | TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima | 100.0 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: | 100.0 | |
| PF00204 | 173 | DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA | 100.0 | |
| cd03481 | 153 | TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T | 99.97 | |
| PF00986 | 65 | DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term | 99.92 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.72 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.3 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.29 | |
| PF01751 | 100 | Toprim: Toprim domain; InterPro: IPR006171 This is | 99.09 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 98.92 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 98.7 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 98.64 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 98.55 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 97.87 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 97.62 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 97.31 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 96.62 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 94.74 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 93.1 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 91.71 | |
| cd00188 | 83 | TOPRIM Topoisomerase-primase domain. This is a nuc | 91.03 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 90.97 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 87.71 | |
| PF09239 | 160 | Topo-VIb_trans: Topoisomerase VI B subunit, transd | 87.1 | |
| cd00823 | 151 | TopoIIB_Trans TopoIIB_Trans: Transducer domain, ha | 86.84 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 84.69 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 81.76 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 80.69 |
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-214 Score=1759.22 Aligned_cols=622 Identities=55% Similarity=0.933 Sum_probs=593.9
Q ss_pred CCCCCcccceeccChhhHhhCCCeeeccCCC-CchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccc
Q 005193 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPID 143 (709)
Q Consensus 74 ~~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~-~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd 143 (709)
..+|++++||+|+||||||||||||||||+. +||||||||||||||||++||||+.|.|+||+||+ ||||
T Consensus 3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd 82 (635)
T COG0187 3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD 82 (635)
T ss_pred cCcCCHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccc
Confidence 4679999999999999999999999999999 99999999999999999999999999999999887 9999
Q ss_pred cCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeecc
Q 005193 144 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL 223 (709)
Q Consensus 144 ~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~ 223 (709)
+||++++|++|+|||+||||||||++ +|||||||||||+|||||||+||+|+|+|+|+.|+|+|++|+++++++.+.
T Consensus 83 iH~~~~~~~vEvI~T~LHAGGKFd~~--~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G~~~~~l~~ig- 159 (635)
T COG0187 83 IHPKEKVSAVEVIFTVLHAGGKFDND--SYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIG- 159 (635)
T ss_pred cCCCCCCCceEEEEEeeccCcccCCC--ccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCCCcCCCceecc-
Confidence 99999999999999999999999998 999999999999999999999999999999999999999999999987662
Q ss_pred CCCCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhc
Q 005193 224 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 303 (709)
Q Consensus 224 ~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~ 303 (709)
.+..+++||+|+||||++||++ ..|++++|++||||+|||||||+|.|+|+|.... .. .|||+|||++||+++++
T Consensus 160 -~~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~--~~-~~~y~~Gl~~yv~~l~~ 234 (635)
T COG0187 160 -STDTKKTGTKVRFKPDPEIFGE-TEFDYEILKRRLRELAFLNKGVKITLTDERTGEE--KK-EFHYEGGLKDYVEYLNK 234 (635)
T ss_pred -cCCCCCCccEEEEEcChHhcCC-cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcc--cc-eeecccHHHHHHHHHhc
Confidence 1346688999999999999986 5899999999999999999999999999997521 12 59999999999999999
Q ss_pred CCCCCCc-eeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 005193 304 DKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 382 (709)
Q Consensus 304 ~~~~l~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l 382 (709)
+++++|+ ++++..+.+++.|||||||+ ++|+++++||||||+|++||||++||+++|+|+||+|+++.+++|+++ +
T Consensus 235 ~k~~l~~~~~~~~~~~~~~~vEvA~q~~-d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~--l 311 (635)
T COG0187 235 GKTPLHEEIFYFNGEKDGIAVEVALQWN-DGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGD--L 311 (635)
T ss_pred CCCccccCceecccCccceEEEEEEEEe-cCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCcCcccC--C
Confidence 9999995 66667778899999999999 899999999999999999999999999999999999999999988765 9
Q ss_pred CHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005193 383 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 462 (709)
Q Consensus 383 ~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare 462 (709)
+++||||||++||||+||||+|+||||+||+|++++.+|++++++.|..||++||.+++.|+++++.+++||+|||+|||
T Consensus 312 ~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~aa~aR~aarkare 391 (635)
T COG0187 312 TGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAAAKAREAARKARE 391 (635)
T ss_pred CHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHH
Q 005193 463 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 542 (709)
Q Consensus 463 ~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~l 542 (709)
++|+|+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++|
T Consensus 392 ~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~~kil~N~EI~~i 471 (635)
T COG0187 392 LTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQTI 471 (635)
T ss_pred HHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccHhhhhhhHHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHH
Q 005193 543 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 622 (709)
Q Consensus 543 i~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~~~y~ys~~ 622 (709)
++|||||++ ++||+++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||++||++.|+|||.
T Consensus 472 i~AlG~g~~-~~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~~~k~~~Y~~~d~ 550 (635)
T COG0187 472 ITALGTGIG-KDFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVKKGKKTFYAYDDE 550 (635)
T ss_pred HHHhCCCCC-CCCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEEcCCceeEeCCHH
Confidence 999999995 4599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccC
Q 005193 623 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 702 (709)
Q Consensus 623 e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~ 702 (709)
|+++.++++...++|+||||||||||||+|||||||||++|+|.||+++|+.+|+++|++|||+++++||+||++|+..
T Consensus 551 E~~~~~~~~~~~~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~~LMGd~ve~Rr~fIe~na~~- 629 (635)
T COG0187 551 ELEKLLERLGKKKGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGDKVEPRRNFIEENALF- 629 (635)
T ss_pred HHHHHHHHhcccCCceeEeecccCCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHHHHcCCCchHHHHHHHHHhhh-
Confidence 9999998875325899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CcCCCCC
Q 005193 703 NLDHLDI 709 (709)
Q Consensus 703 ~~~~ld~ 709 (709)
..++||
T Consensus 630 -~~~~di 635 (635)
T COG0187 630 -VENLDI 635 (635)
T ss_pred -hhhccC
Confidence 455665
|
|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd00188 TOPRIM Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd00823 TopoIIB_Trans TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI) | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 709 | ||||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 2e-75 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 3e-75 | ||
| 1ei1_A | 391 | Dimerization Of E. Coli Dna Gyrase B Provides A Str | 3e-69 | ||
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 2e-63 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 3e-60 | ||
| 1kij_A | 390 | Crystal Structure Of The 43k Atpase Domain Of Therm | 7e-55 | ||
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 6e-54 | ||
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 6e-54 | ||
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 4e-50 | ||
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 5e-50 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 6e-48 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 6e-11 | ||
| 3ttz_A | 198 | Crystal Structure Of A Topoisomerase Atpase Inhibit | 8e-42 | ||
| 4hxz_A | 390 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 2e-40 | ||
| 1s16_A | 390 | Crystal Structure Of E. Coli Topoisomerase Iv Pare | 9e-39 | ||
| 4gee_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 3e-38 | ||
| 3lnu_A | 408 | Crystal Structure Of Pare Subunit Length = 408 | 5e-37 | ||
| 4b6c_A | 196 | Structure Of The M. Smegmatis Gyrb Atpase Domain In | 1e-36 | ||
| 4duh_A | 220 | Crystal Structure Of 24 Kda Domain Of E. Coli Dna G | 3e-36 | ||
| 3g75_A | 184 | Crystal Structure Of Staphylococcus Aureus Gyrase B | 2e-35 | ||
| 1aj6_A | 219 | Novobiocin-resistant Mutant (r136h) Of The N-termin | 2e-35 | ||
| 4em7_A | 226 | Crystal Structure Of A Topoisomerase Atp Inhibitor | 4e-34 | ||
| 3cwv_A | 369 | Crystal Structure Of B-Subunit Of The Dna Gyrase Fr | 2e-33 | ||
| 4hz5_A | 216 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 5e-33 | ||
| 4hyp_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 6e-33 | ||
| 1kzn_A | 205 | Crystal Structure Of E. Coli 24kda Domain In Comple | 7e-33 | ||
| 3g7e_A | 203 | Crystal Structure Of E. Coli Gyrase B Co-Complexed | 1e-32 | ||
| 1s14_A | 194 | Crystal Structure Of Escherichia Coli Topoisomerase | 1e-23 | ||
| 4hz0_A | 213 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 2e-22 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 3e-22 | ||
| 3fv5_A | 201 | Crystal Structure Of E. Coli Topoisomerase Iv Co-Co | 1e-21 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 2e-21 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 5e-14 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 1e-13 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 1e-13 | ||
| 3l4j_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 1e-13 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 1e-13 |
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
|
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 | Back alignment and structure |
| >pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 | Back alignment and structure |
| >pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor Length = 198 | Back alignment and structure |
| >pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 390 | Back alignment and structure |
| >pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 | Back alignment and structure |
| >pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 | Back alignment and structure |
| >pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In Complex With An Aminopyrazinamide Length = 196 | Back alignment and structure |
| >pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 | Back alignment and structure |
| >pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 | Back alignment and structure |
| >pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 | Back alignment and structure |
| >pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 | Back alignment and structure |
| >pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From Myxococcus Xanthus Length = 369 | Back alignment and structure |
| >pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 | Back alignment and structure |
| >pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 | Back alignment and structure |
| >pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 | Back alignment and structure |
| >pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv Pare 24kda Subunit Length = 194 | Back alignment and structure |
| >pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 213 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
Score = 590 bits (1525), Expect = 0.0
Identities = 162/399 (40%), Positives = 228/399 (57%), Gaps = 20/399 (5%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y + I+VL+GLE VR RPAMYIG TG G HHL EILDNAVDEA AGYA+ I V L
Sbjct: 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLN 61
Query: 136 ADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D S IP+DL P K A+E + LH+GGKF + Y VSGGLHGVG SV
Sbjct: 62 EDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGA--YKVSGGLHGVGASV 119
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALSE V V+R+G + +SRG+ L V+ + + GTR+ F PD ++F
Sbjct: 120 VNALSEWTVVEVFREGKHHRIAFSRGEVTEPL--RVVGEAPRGKTGTRVTFKPDPEIFGN 177
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
++FD + I R+RE+A+L L + + E+ + GG+ + + L +
Sbjct: 178 -LRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEE----VFLDKGGVASFAKALAEGED 232
Query: 307 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
L+ R + +++ Y+ +L YAN I T DGGTH+ K++ +R L
Sbjct: 233 LLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRAL 291
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 425
N KK+ K+K +G+ + EGL ++SV++PNP+FEGQTK +L NPE V Q V
Sbjct: 292 NQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVV 351
Query: 426 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 464
E L E LE +P + ++ K+L A +A AA++AR+LV
Sbjct: 352 YERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 390
|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Length = 198 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 100.0 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 100.0 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 100.0 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisom | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 100.0 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, | 100.0 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 100.0 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topois | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {A | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3qx3_A | 803 | DNA topoisomerase 2-beta; toprim domain, winged-he | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomer | 100.0 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 100.0 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 100.0 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 100.0 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 100.0 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 100.0 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.76 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.71 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.7 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.65 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.58 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.56 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 95.78 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 94.76 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 94.53 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 94.48 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 94.27 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 93.64 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 92.91 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 92.71 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 92.12 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 90.64 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 90.39 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 87.58 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 87.33 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 86.06 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 85.66 |
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-166 Score=1497.43 Aligned_cols=600 Identities=24% Similarity=0.350 Sum_probs=493.2
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCC-----------------------chhHHHHHHHHhhHHhhccCC-CCeE
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNI 130 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~-----------------------GL~hlv~EIldNavDe~~~g~-~~~I 130 (709)
..|.+++||+|+||||||||||||||||++. ||||||||||||||||+++|+ |+.|
T Consensus 5 ~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I 84 (1177)
T 4gfh_A 5 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 84 (1177)
T ss_dssp --CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeE
Confidence 3477889999999999999999999999865 999999999999999999997 6899
Q ss_pred EEEEec-CCc---------cccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEE-
Q 005193 131 EVALLA-DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 199 (709)
Q Consensus 131 ~V~i~~-Dgs---------IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~- 199 (709)
+|+||. ||+ ||||+||++|+|+||+|||+||||||||++ +|++||||||||+|||||||++|.|+|+
T Consensus 85 ~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 85 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEE
Confidence 999994 776 999999999999999999999999999998 9999999999999999999999999985
Q ss_pred -eCCEEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcC---CCcEEEEee
Q 005193 200 -RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRK 275 (709)
Q Consensus 200 -r~Gk~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln---pGL~I~l~d 275 (709)
|+|+.|+|+|++|+++.+++.+ ...+.+++||+|+||||++||++ ..|+++++..|++++|+|| +++.+.+++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i--~~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g 239 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKI--TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNG 239 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEE--EECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESS
T ss_pred EcCCEEEEEEEECCcccCCCCee--ecCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 8999999999999999887654 22345679999999999999986 4799999999999999887 457789998
Q ss_pred cCCCCCcCcceeEeecccHHHHHHHHhcCCCCCC--------ceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceec
Q 005193 276 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 347 (709)
Q Consensus 276 er~~~~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T 347 (709)
++. +.++|++|+.+|++.++..+..++ +...+..+..+..||||++|+ +++ .+++||||+|+|
T Consensus 240 ~~~-------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T 310 (1177)
T 4gfh_A 240 KSL-------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIAT 310 (1177)
T ss_dssp CBC-------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEE
T ss_pred Cee-------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeec
Confidence 764 467889999999988876554322 112233445556799999998 444 346899999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhH-H
Q 005193 348 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-Q 426 (709)
Q Consensus 348 ~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v-~ 426 (709)
++||||++||++||+++||+|+++++. .+++++||||||++||||+|+||+|+||||+||+|+.....+...+ .
T Consensus 311 ~~GGTHv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~ 385 (1177)
T 4gfh_A 311 TMGGTHVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 385 (1177)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchH
Confidence 999999999999999999999876543 4699999999999999999999999999999999986544333222 2
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEeecCCCCcc
Q 005193 427 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGS 503 (709)
Q Consensus 427 ~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gs 503 (709)
+.+..+++ . .|+++++.++++++++++++...++|+.+ ..+ +||+||+ ++|+++||||||||||||||
T Consensus 386 ~~~~~~~~--~----~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGs 456 (1177)
T 4gfh_A 386 EYINKIMK--T----DLATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSL 456 (1177)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHH
T ss_pred HHhhhhhh--H----HHHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhh
Confidence 33333332 2 34555555555554444444444455433 223 4999987 68999999999999999999
Q ss_pred ccccC---CCCceEeeccCcccccccccCHHHhhhcHhHHHHHHHhcCCccCCcCccccccceeEEEeecCCCCCchhhh
Q 005193 504 AKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 580 (709)
Q Consensus 504 ak~gR---dr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~ 580 (709)
||+|| +|+||||||||||||||++|+.+||++|+||++||+|||||++.+.+|+++||||||||||||||||+||||
T Consensus 457 Ak~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrt 536 (1177)
T 4gfh_A 457 AVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 536 (1177)
T ss_dssp HHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHH
T ss_pred HhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHH
Confidence 99999 889999999999999999999999999999999999999999655559999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhh-cCcEEEecCCeEEEEeC---CeEEEeeCHHHHHHHHHhCCCCCcccceEeeccccCChhhhHhh
Q 005193 581 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWET 656 (709)
Q Consensus 581 Llltff~~~~p~Li~-~G~i~~~~tPL~kv~~g---k~~~y~ys~~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~et 656 (709)
|||||||||||+||+ +||||+|+||||||+.| |+.+|||+++|+++|++..+..++|+||||||||||||+|||||
T Consensus 537 LLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Et 616 (1177)
T 4gfh_A 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREY 616 (1177)
T ss_dssp HHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHH
T ss_pred HHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHH
Confidence 999999999999999 99999999999999865 45789999999999998876666899999999999999999998
Q ss_pred hcCccce--eeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcC
Q 005193 657 TLNPEQR--MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705 (709)
Q Consensus 657 t~dp~~r--~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~~~ 705 (709)
||||++| .+.+++.+|++.++++ |||+++++||+||++|++...++
T Consensus 617 t~~~d~~~~~~~~v~~~d~~~~d~~---f~~~~~~~RkewI~~~~~~~~~d 664 (1177)
T 4gfh_A 617 FSNLDRHLKIFHSLQGNDKDYIDLA---FSKKKADDRKEWLRQYEPGTVLD 664 (1177)
T ss_dssp HHTCTTTEEEEECCCTTTHHHHHHH---HCGGGHHHHHHHHHHCCTTCCCC
T ss_pred HhCcccceEEEEEcccccHHHHHHH---HhccchhhHHHHHHhcCcccccc
Confidence 8887754 4556667776655544 57899999999999999875543
|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 709 | ||||
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 6e-74 | |
| d1ei1a2 | 219 | d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli | 9e-68 | |
| d1kija2 | 212 | d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph | 8e-59 | |
| d1s14a_ | 168 | d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri | 7e-51 | |
| d1ei1a1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Escherichia col | 1e-42 | |
| d1kija1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop | 7e-42 | |
| d1s16a1 | 167 | d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B | 1e-40 | |
| d1pvga2 | 239 | d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's | 9e-35 | |
| d1pvga1 | 161 | d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's | 2e-20 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 3e-04 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 252 bits (643), Expect = 6e-74
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 471 RSSSLPG--KLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 520
R S + KL D + + + + + EGDSA G A GRD + PLRG
Sbjct: 1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRG 58
Query: 521 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 580
K+LNV + KN EIQ + + +GL + + ++LRY ++I+TD D DG+HI+
Sbjct: 59 KMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 118
Query: 581 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQY---CYDDAELKKVKSSFPSNAL 636
L++ F L D +G + + P+ KV K + Y+ + +K +
Sbjct: 119 LIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 178
Query: 637 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+ + +KGLG + ++ E N ++ + K + + + + + D RKE ++
Sbjct: 179 WKQKYYKGLGTSLAQEVREYFSNLDRHL-KIFHSLQGNDKDYIDLAFSKKKADDRKEWLR 237
Query: 697 N 697
Sbjct: 238 Q 238
|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 172 | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 709 | |||
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 100.0 | |
| d1kija1 | 172 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1ei1a1 | 172 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1s16a1 | 167 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1pvga1 | 161 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 99.94 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.04 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 98.51 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 97.41 | |
| d2hkja2 | 164 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 92.07 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 91.15 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.22 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 82.54 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 80.53 |
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Type II DNA topoisomerase superfamily: Type II DNA topoisomerase family: Type II DNA topoisomerase domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7e-69 Score=627.50 Aligned_cols=226 Identities=27% Similarity=0.437 Sum_probs=176.0
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEeecCCC-----CccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHHHH
Q 005193 473 SSLPGKLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544 (709)
Q Consensus 473 ~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA-----~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~ 544 (709)
.++| ||+||+ ++++.+||||||||||| +|++++||| ||||||||||||||++++.+||++|+||++|++
T Consensus 6 ~~~p-kl~d~~~~g~~~~~~~~l~~~EGdSA~~~~~~g~~~~~rd--~~~v~plrGK~lN~~~~~~~~~~~n~ei~~l~~ 82 (760)
T d1bjta_ 6 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKK 82 (760)
T ss_dssp CSCT-TCBCCTTTTSGGGGGCEEEEEESHHHHHHHHHHHHHHCSS--SEEEEEEECCCCSCCC------CCHHHHHHHHH
T ss_pred CCCC-CcccccccCCCChhhcEEEEecccCccccccCcccccccc--cEEEeecCCcccccccCCHHHHhhCHHHHHHHH
Confidence 3577 999998 68999999999999999 778888888 799999999999999999999999999999999
Q ss_pred HhcCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhh-cCcEEEecCCeEEEEe---CCeEEEeeC
Q 005193 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVER---GKQVQYCYD 620 (709)
Q Consensus 545 alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~-~G~i~~~~tPL~kv~~---gk~~~y~ys 620 (709)
||||+++.++.|+++||||||||||||||||+||+||||||||+|||+||+ +||||+|+||||||+. +|++++||+
T Consensus 83 ~lG~~~~~~~~~~~~lrY~~i~imtDaD~DG~hI~~Lll~ff~~~~p~l~~~~g~i~~~~~Pl~~~~~~~~~~~~~~~y~ 162 (760)
T d1bjta_ 83 IMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYN 162 (760)
T ss_dssp HHTCCSSBCCSCSSSSSCSEEEEEEC-----CCHHHHHHHHHHHHBTTTTTSTTSEEECCCCSEEEEECSSCCEEEEESS
T ss_pred HHCCCCCCCCCchhhCCCCcEEEEECCCCCchHHHHHHHHHHHHhhHHHhccCCEEEEEeCCcEEEEecCCCcceeeecc
Confidence 999999655558999999999999999999999999999999999999998 8999999999999975 456889999
Q ss_pred HHHHHHHHHhCCCCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 005193 621 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 700 (709)
Q Consensus 621 ~~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~ 700 (709)
++|+++|..+....++|+||||||||||+|+|+|||||||++|++.++++++. .++.++.+++|+++++||+||.++.+
T Consensus 163 ~~e~~~~~~~~~~~~~~~i~~yKGLG~~~~~e~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~F~k~~~d~RKewl~~~~~ 241 (760)
T d1bjta_ 163 MPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGN-DKDYIDLAFSKKKADDRKEWLRQYEP 241 (760)
T ss_dssp HHHHHHHHHHTTTTSCEEECCCCCCSTTHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCCSCC
T ss_pred hhhHHHHHHHhcCccccchhcccccccccchhhHHHhcccccccceeEeccch-hHHHHHHHHhhcccchHHHHHhhccc
Confidence 99999999887656689999999999999999999999999988776665543 23445555668999999999999876
Q ss_pred cC
Q 005193 701 LV 702 (709)
Q Consensus 701 ~~ 702 (709)
..
T Consensus 242 ~~ 243 (760)
T d1bjta_ 242 GT 243 (760)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|