Citrus Sinensis ID: 005223

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------

MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEVVPFWSFLLLYSYVIIRGLQFLAC

cHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccc

ccHHHHHHHHcccccccccccccccHHcccccccccHcHccccccccHHHHHHHHHccccccccccccccccccccEEEHcccccHHHHcccccccccHccHccccccccccccccccccccccccccccccccHccccccccccccHHHHHHHHHHHHcccHHHccccccccccccccccccHccccccccccccccEEHHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccHHHHHHccccccHHHHHHHHHHHHccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccEEEccccHHHcccHHcccccccccccccccccccHcccccccccccccccccHHHHcccccccccccccccccccHccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc

MVEQKRkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslRKEIDRlntnslngsdedigsdeardfyeyeeplpqeesrknrrfdpvenyeyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdndERHLRMLqgvtgmpseffegkkkkkNVVIseaypesefnptrdvldgngqisiddlleplqgksgySKLRKRMHQMRKkstsvlaplpkpeqeklERKVVYEQSKkditkweplvkmnreapsiyfdedtnlgfstvgaiaagfeprTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKsmkdssssddssdeddvdensagsdqdRASKLYATAKEKTLKVlaeddevpesgvlslPFMVRGMKKRKEEAIQEANAALQEYESSLKKLegtggeenlkegaasgrrvfgpvkrevlvpskkietdnyygnsdsegdleaeanmdagngtnndvqknvktdsftlhvdheshpdsvfksfedvvrdpgpktsydVAIFASgtwkkmksgndvdannekSMKVVEpalndqglevvpFWSFLLLYSYVIIRGLQFLAC

mveqkrkaaesadstkhkmkhskkpkrqskkldgggekkkrkgprlpnslrkeidrlntnslngsdedigsdeaRDFYEyeeplpqeesrknrrfdpvENYEyelpekfedenvlsddeddnndienncgrrgiskqvgdefqdgdnDERHLRMLQGvtgmpseffegkkkKKNVVISEaypesefnptrdvlDGNGQISiddlleplqgksGYSKLRKRMHQMrkkstsvlaplpkpeqeklerkvvyeqskkditkweplvkmNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKeahkqdgskllelnkISVEDYLEERNHVAKMrsllfrhemkrkrikkiksktyhrllkkdrlkaasVEMLMDPEAAKEEARKQEFkraeermtlkhknssrwaKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSmkdssssddssdeddvdensagsdqdrasKLYATAKEKTlkvlaeddevpesgvlslpfmVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLkegaasgrrvfgpvkrevlvpskkietdnyygnsDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDheshpdsvfksfedVVRDPGPKTSYDVAIFasgtwkkmksgNDVDANNEKSMKVVEPALNDQGLEVVPFWSFLLLYSYVIIRGLQFLAC

MVEQKRKAAESADSTkhkmkhskkpkrqskkldgggekkkrkgPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFedenvlsddeddnndiennCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMkrkrikkikskTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKdssssddssdeddvdensAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEVVPFWSFLLLYSYVIIRGLQFLAC

***************************************************************************************************************************************************************************************************************************************************************ITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFE*******************************LNKISVEDYLEERNHVAKMRSLLFRHE*****I**I***TYHRL*********************************************************************************************************************************************************************************************************************************************************************************SYDVAIFASGTWK*********************ALNDQGLEVVPFWSFLLLYSYVIIRGLQFL**

********************************************************************************************************************************************************************************************************************************************************YEQSKKDITKWEPLVK************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VPFWSFLLLYSYVIIRGLQFLAC

********************************************RLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYS**************SVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPE************RAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTR******************************RASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEVVPFWSFLLLYSYVIIRGLQFLAC

********************************************RLPNSLRKEIDRLN**************EARDFYEYEEPLPQEESRKNRRFDPVENYEYELPE************************************************Q*VTGMP***********************************QISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLT*********************************SK*Y*TAKEKTLK**********SGV**********************AALQEYES**************************************************************************************************V*RDPGPKTSYDVAIFASGTWKK***************************EVVPFWSFLLLYSYVIIRGLQFLAC

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPALNDQGLEVVPFWSFLLLYSYVIIRGLQFLAC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		707	2.2.26 [Sep-21-2011]
P87137		929	Uncharacterized protein C	yes	no	0.451	0.343	0.341	6e-34
Q04500		899	U3 small nucleolar RNA-as	yes	no	0.471	0.370	0.278	2e-27
Q3T0Q8		770	U3 small nucleolar RNA-as	yes	no	0.417	0.383	0.317	2e-26
Q6EJB6		756	U3 small nucleolar RNA-as	yes	no	0.478	0.447	0.286	3e-20
Q9BVJ6		771	U3 small nucleolar RNA-as	yes	no	0.415	0.381	0.324	9e-20
Q640M1		767	U3 small nucleolar RNA-as	no	no	0.499	0.460	0.302	5e-18
Q5TAP6		766	U3 small nucleolar RNA-as	no	no	0.410	0.378	0.297	2e-15

>sp\|P87137\|YDM6_SCHPO Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1	Back alignment and function desciption

 Score =  146 bits (368), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 191/354 (53%), Gaps = 35/354 (9%)

Query: 233 APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAG 291
           APL K  Q++LER+  YEQ+K D+ KW+P+V  NR++  + F   +T     +   +A+ 
Sbjct: 325 APLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASS 384

Query: 292 FEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHE 351
           FEPRTE E+KM   + D  ++        + L LNK+SVE+  E    +  MR L+FR E
Sbjct: 385 FEPRTESERKMHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREE 444

Query: 352 MKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKE---EARKQEFKRAEERMTLKH 408
            K KR+ KIKSKTY ++ K  + K    EM + P++ ++   E  K E  RA ERMT +H
Sbjct: 445 RKAKRVAKIKSKTYRKIRKNRKEK----EMALIPKSEEDLENERIKSEEARALERMTQRH 500

Query: 409 KNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDE 468
           KN+S W +++L+R   +  EGTR A+ EQ+++   L +++   + S       D +DV E
Sbjct: 501 KNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIS-----EMDGEDVSE 553

Query: 469 NSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAA 528
            S  SD D   ++ +TA EK    +  ++E    GVL + FM R    R++  +Q+    
Sbjct: 554 FS-DSDYDTNEQV-STAFEK----IRNEEEPKLKGVLGMKFM-RDASNRQKALVQD---E 603

Query: 529 LQEYESSLKKL--------EGTGGEENLKEGAASGRRVFGPVKR--EVLVPSKK 572
           +Q +E  L  +        +G  G   +  G  +GRR F P +   ++ +PS+K
Sbjct: 604 MQAFEDELAGVPNEDDTSQKGEDGVPGVLIGNNTGRRSFKPSEEAAKLSLPSRK 657

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|Q04500\|UTP14_YEAST U3 small nucleolar RNA-associated protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP14 PE=1 SV=1	Back alignment and function description

>sp\|Q3T0Q8\|UT14A_BOVIN U3 small nucleolar RNA-associated protein 14 homolog A OS=Bos taurus GN=UTP14A PE=2 SV=1	Back alignment and function description

>sp\|Q6EJB6\|UT14B_MOUSE U3 small nucleolar RNA-associated protein 14 homolog B OS=Mus musculus GN=Utp14b PE=1 SV=2	Back alignment and function description

>sp\|Q9BVJ6\|UT14A_HUMAN U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens GN=UTP14A PE=1 SV=1	Back alignment and function description

>sp\|Q640M1\|UT14A_MOUSE U3 small nucleolar RNA-associated protein 14 homolog A OS=Mus musculus GN=Utp14a PE=2 SV=1	Back alignment and function description

>sp\|Q5TAP6\|UT14C_HUMAN U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens GN=UTP14C PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
225437402		895	PREDICTED: uncharacterized protein C57A7	0.940	0.743	0.656	0.0
255564196		900	U3 small nucleolar RNA-associated protei	0.933	0.733	0.616	0.0
147791054		1529	hypothetical protein VITISV_003625 [Viti	0.820	0.379	0.640	0.0
356570968		883	PREDICTED: U3 small nucleolar RNA-associ	0.923	0.739	0.556	1e-177
449436485		904	PREDICTED: U3 small nucleolar RNA-associ	0.916	0.716	0.572	1e-177
356503904		887	PREDICTED: U3 small nucleolar RNA-associ	0.903	0.720	0.548	1e-175
357511257		890	U3 small nucleolar RNA-associated protei	0.920	0.731	0.516	1e-163
145339926		855	U3 ribonucleoprotein-like protein [Arabi	0.847	0.700	0.547	1e-157
110740279		855	hypothetical protein [Arabidopsis thalia	0.847	0.700	0.545	1e-157
3193300		870	T14P8.20 [Arabidopsis thaliana] gi\|72690	0.835	0.679	0.549	1e-156

>gi\|225437402\|ref\|XP_002268231.1\| PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera] gi\|297743903\|emb\|CBI36873.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/689 (65%), Positives = 540/689 (78%), Gaps = 24/689 (3%)

Query: 1   MVEQKRKAAESADSTK-HKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNT 59
           M E+KRK+ E +   +  K + + KPK            KKR GPRLP+ LRKE+D +N 
Sbjct: 1   MAEKKRKSKEESGGGRLQKKRKNSKPKTL----------KKRTGPRLPSKLRKELDLVNP 50

Query: 60  NSL-NGSDEDIGSDE----ARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFEDENV 114
           N L  G DE+I SDE    A + YEYEE   +EES+KNRRFD VEN+EYELPE F+DEN+
Sbjct: 51  NPLKGGGDEEINSDEGELLANNLYEYEEAAAEEESKKNRRFDSVENFEYELPEDFKDENI 110

Query: 115 LSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKN 174
            SDD+D   + E N  R   S  +GDE ++ D D RH+RMLQG+TGMPSE FEGKK+K N
Sbjct: 111 ASDDDDIEGEDEEN-NRSENSSHLGDEVEEED-DGRHMRMLQGITGMPSEAFEGKKRKNN 168

Query: 175 VVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAP 234
           VV+SEAYPESE+NP+RDVL+GNG+ISI DLL+PL GKSGYSKLRKRMHQ+ +KS SV AP
Sbjct: 169 VVVSEAYPESEYNPSRDVLEGNGRISIQDLLDPLHGKSGYSKLRKRMHQVERKSMSVHAP 228

Query: 235 LPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVGAIAAGFEP 294
           LPK ++EKLERKV YEQSKKDITKWEPLVK NREAP++YFDED +LGFSTVGAIA+ FEP
Sbjct: 229 LPKADREKLERKVAYEQSKKDITKWEPLVKKNREAPTVYFDEDVDLGFSTVGAIASEFEP 288

Query: 295 RTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKR 354
           RT+FEKK+ASLV+DDKV EAH+QDGS+LLELNKISVED  E  N +AKMRSLLF HEMK 
Sbjct: 289 RTDFEKKIASLVHDDKVLEAHRQDGSRLLELNKISVEDVKERHNRIAKMRSLLFNHEMKA 348

Query: 355 KRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRW 414
           KRIKKIKSKTYHRLLKKDRLK AS E+ MDPEAAKE A KQEFKRAEER+TLKHKNSS+W
Sbjct: 349 KRIKKIKSKTYHRLLKKDRLKTASAEIQMDPEAAKELAMKQEFKRAEERLTLKHKNSSKW 408

Query: 415 AKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSD 474
           AKRILKRGLD QDEGTRAAITEQL QHALLTRKM SMKD+SS + S ++D  DENSAGSD
Sbjct: 409 AKRILKRGLDVQDEGTRAAITEQLHQHALLTRKMHSMKDTSSDESSDEDDF-DENSAGSD 467

Query: 475 QDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYES 534
           +D ASKL A AKEKTL+VL E+D++P+SGVLSLPFMVRG+KKRKE A +E   A+ E+E+
Sbjct: 468 EDGASKLLAKAKEKTLEVLEEEDKIPDSGVLSLPFMVRGLKKRKEAAYEEGKLAINEFEA 527

Query: 535 SLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANM 594
           SLK++E  GG ENLKE A+SGRRVFG VK+++   S K   D +Y NSDSE + + + N+
Sbjct: 528 SLKQMELGGGAENLKETASSGRRVFGTVKKQIQEFSNK---DAHYNNSDSEDEFKVKENI 584

Query: 595 DAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWK 654
           +A N  NN++ K+V  D+  L  + E   D +FKSF D+VRDPGPKT+Y+VA+FASG+WK
Sbjct: 585 EAANDQNNNLPKHVDIDAGLLREESEIGQDPIFKSFNDIVRDPGPKTTYEVAMFASGSWK 644

Query: 655 KMKSGNDVDANNEKSMKVVEPALN--DQG 681
           KMKS N+ + N  K  K VEP  +  DQG
Sbjct: 645 KMKSENEANGNIIKPPKSVEPPRHNKDQG 673

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255564196\|ref\|XP_002523095.1\| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi\|223537657\|gb\|EEF39280.1\| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147791054\|emb\|CAN68024.1\| hypothetical protein VITISV_003625 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356570968\|ref\|XP_003553654.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A-like [Glycine max]	Back alignment and taxonomy information

>gi\|449436485\|ref\|XP_004136023.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus] gi\|449498517\|ref\|XP_004160559.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog C-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356503904\|ref\|XP_003520740.1\| PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog B-like [Glycine max]	Back alignment and taxonomy information

>gi\|357511257\|ref\|XP_003625917.1\| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula] gi\|355500932\|gb\|AES82135.1\| U3 small nucleolar RNA-associated protein-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|145339926\|ref\|NP_567232.3\| U3 ribonucleoprotein-like protein [Arabidopsis thaliana] gi\|332656764\|gb\|AEE82164.1\| U3 ribonucleoprotein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|110740279\|dbj\|BAF02036.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3193300\|gb\|AAC19284.1\| T14P8.20 [Arabidopsis thaliana] gi\|7269000\|emb\|CAB80733.1\| AT4g02400 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
TAIR\|locus:2133293		855	AT4G02400 "AT4G02400" [Arabido	0.749	0.619	0.533	1.6e-143
POMBASE\|SPAC57A7.06		929	SPAC57A7.06 "U3 snoRNP protein	0.663	0.504	0.281	1.3e-32
CGD\|CAL0000085		872	orf19.7552 [Candida albicans (	0.411	0.333	0.303	7.3e-29
UNIPROTKB\|Q5ACU0		872	CaO19.7552 "Putative uncharact	0.411	0.333	0.303	7.3e-29
UNIPROTKB\|F1RTH6		773	LOC100523416 "Uncharacterized	0.428	0.391	0.293	1.8e-28
MGI\|MGI:1919804		767	Utp14a "UTP14, U3 small nucleo	0.611	0.563	0.261	2.3e-28
UNIPROTKB\|E2R635		772	UTP14A "Uncharacterized protei	0.417	0.382	0.300	2.3e-28
UNIPROTKB\|Q9BVJ6		771	UTP14A "U3 small nucleolar RNA	0.415	0.381	0.309	3.9e-28
UNIPROTKB\|Q3T0Q8		770	UTP14A "U3 small nucleolar RNA	0.417	0.383	0.298	3.9e-27
UNIPROTKB\|A6QLB4		770	UTP14A "U3 small nucleolar RNA	0.417	0.383	0.301	4.3e-25

TAIR\|locus:2133293 AT4G02400 "AT4G02400" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1386 (493.0 bits), Expect = 1.6e-143, Sum P(2) = 1.6e-143
 Identities = 298/559 (53%), Positives = 383/559 (68%)

Query:    44 PRLPNSLRKEI--DRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENY 101
             P LPNS+ K I  ++   NS    DE    DE  D YEYEE +P+EES+KN R+D V+NY
Sbjct:    21 PHLPNSILKTIANEKRPLNSDEDDDEIDSDDENVDLYEYEEGVPEEESKKNNRYDRVDNY 80

Query:   102 EYELPEKFXXXXXXXXXXXXXXXXXXXCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGM 161
             +YELPE F                       G S+   +E  +GD D+RH RMLQG+TGM
Sbjct:    81 DYELPEDFEDENVESDDDEDG----------GNSE---NEEGEGD-DDRHTRMLQGLTGM 126

Query:   162 PSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRM 221
             PS  F+ + KK+ V+ +EAYPESEFNPTRDVL+G G IS++DLL PL+GK G++ L KR+
Sbjct:   127 PSAAFQEESKKRPVLYTEAYPESEFNPTRDVLEGKGLISVEDLLAPLEGKPGFNDLNKRI 186

Query:   222 HQMRKKSTSVL-APLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNL 280
             ++M+K + SV+ APLPKPE+E+LERK V    +KD  KW  LVK NREAP++YF++  N+
Sbjct:   187 NRMQKDTQSVVHAPLPKPERERLERKAVKGLVEKDFNKWVHLVKRNREAPTVYFNQPVNV 246

Query:   281 GFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHV 340
             G+STVGAIA+ F+PRTEFEKKMAS++ D+++ EAHK+DG+KLLELN++S+ED+++ R+H+
Sbjct:   247 GYSTVGAIASEFQPRTEFEKKMASVLKDNELGEAHKEDGAKLLELNEVSMEDHIKYRDHI 306

Query:   341 AKMRSLLFRHEMXXXXXXXXXXXTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRA 400
             AKMRSLLFRHE+           TYHRL  KD LK +++  LMDPE AKEEA KQE +R 
Sbjct:   307 AKMRSLLFRHELKSKRIKKIKSKTYHRLKGKD-LKKSAMGALMDPEMAKEEAIKQETRRV 365

Query:   401 EERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKXXXXXXXX 460
             EERMTLKHKN+ +WAKR+L RGL  + +GTRAAI+EQLQ +A L+RKM S          
Sbjct:   366 EERMTLKHKNTGKWAKRMLSRGLTERYDGTRAAISEQLQINATLSRKMNSTNDGSSSDES 425

Query:   461 XXXXXXXXXXAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEE 520
                        GSDQD  SKL A A+EKTLK + EDD+VP SG+LSLPFM R MKK+ EE
Sbjct:   426 DDEEELS---CGSDQDTPSKLIAKAREKTLKTM-EDDDVPNSGLLSLPFMARAMKKKNEE 481

Query:   521 AIQEANAALQEYESSLKKLEGTGGEENLKEGA-ASGRRVFGPVKR-EVLVPSKKIETDNY 578
             A +EA  A  EY    K+LE  GGE+N K+ A  SGRRVFG   + E    SKK ++DN+
Sbjct:   482 ANEEAKRAFGEY----KELENFGGEDNPKKSADVSGRRVFGATSKVEAPKESKK-DSDNF 536

Query:   579 YGNSDSEGDLEAEANMDAG 597
             Y NSDS+ D+E   N D G
Sbjct:   537 YDNSDSDNDMEGIENNDLG 555

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA;ISS

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

POMBASE\|SPAC57A7.06 SPAC57A7.06 "U3 snoRNP protein Utp14 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

CGD\|CAL0000085 orf19.7552 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ACU0 CaO19.7552 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RTH6 LOC100523416 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1919804 Utp14a "UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R635 UTP14A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BVJ6 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3T0Q8 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QLB4 UTP14A "U3 small nucleolar RNA-associated protein 14 homolog A" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028021001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (884 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)	•		•	0.555
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)	•		•	0.526
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)	•		•	0.519
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)	•		•	0.440
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)	•			0.439
	26N20_60	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)	•		•	0.440
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)	•	•	•	0.440
	GSVIVG00036355001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (842 aa)	•			0.436
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)	•	•	•	0.434
	GSVIVG00011733001	SubName- Full=Chromosome chr4 scaffold_333, whole genome shotgun sequence; (714 aa)	•			0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		707
pfam04615		728	pfam04615, Utp14, Utp14 protein	1e-111
COG5644		869	COG5644, COG5644, Uncharacterized conserved protei	7e-34

>gnl\|CDD\|218177 pfam04615, Utp14, Utp14 protein	Back alignment and domain information

 Score =  352 bits (905), Expect = e-111
 Identities = 190/542 (35%), Positives = 284/542 (52%), Gaps = 35/542 (6%)

Query: 140 DEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQI 199
            + +D D++++H ++L  ++ +  E  + +KKK      E+  ESEFN   +     G++
Sbjct: 7   SDEEDDDDEDKHSKLLSAISSLGGEKKKDEKKKA-DRSEESGKESEFNLPSE--GAGGKL 63

Query: 200 SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKW 259
           ++ DLL  +Q  S   K  K++ ++ KK  ++ APL K +Q++LERK  YE++K++++KW
Sbjct: 64  TLSDLLGSIQDSSSLKKSLKQLDKISKKKKTLEAPLAKRQQDRLERKAAYEKTKEELSKW 123

Query: 260 EPLVKMNREAPSIYFD-EDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDK-VKEAHKQ 317
           +P+VK NR A  + F       G +TV AIA+ F+PRTE E ++AS++ +     +  K 
Sbjct: 124 DPVVKQNRRAEHLVFPLNKEPSGNATVNAIASQFKPRTELESEIASILEESGLASDEKKL 183

Query: 318 DGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAA 377
              + LEL K+S E+    R  + KMR LLFR E K KRIKKIKSK YHR+ KK++LK  
Sbjct: 184 TPFEELELKKLSPEEAKARRAELRKMRELLFREEAKAKRIKKIKSKKYHRVHKKEKLKEE 243

Query: 378 SVE----MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAA 433
             E    +  DPEAA EE  K E +RAEERMTLKHKN+S+WAK +LK G    DE  R A
Sbjct: 244 LKEFEELVKADPEAALEELEKLERRRAEERMTLKHKNTSKWAKSMLKTGRAKYDEEARKA 303

Query: 434 ITEQLQQHALLTRKMKSMKDSS-SSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKV 492
           + EQL+Q   L RK++    S    D+ SD ++ DE+    D D  +      ++K  K+
Sbjct: 304 LEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENP--WMLRKKLGKL 361

Query: 493 LAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGA 552
              +D+   SG+LS+ FM R   ++KEE   E     +E    L+  E +  EEN +   
Sbjct: 362 KEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRE----LEGEEESDEEENEEPSK 417

Query: 553 A-SGRRVFGPVKREVLVPSKKIETDNY-----YGNSDSEGDLEAEANMDAGNGTNNDVQK 606
              GRR FGP   E    SKK++ +N         SD E +LE E         N  +++
Sbjct: 418 KNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKR 477

Query: 607 NVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANN 666
           + K                  +  E    +P  KT+  V   A     K KS + +D   
Sbjct: 478 SEKA-------------QKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAA 524

Query: 667 EK 668
            K
Sbjct: 525 NK 526

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl\|CDD\|227931 COG5644, COG5644, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		707
PF04615		735	Utp14: Utp14 protein; InterPro: IPR006709 A large	100.0
COG5644		869	Uncharacterized conserved protein [Function unknow	100.0
KOG2172		654	consensus Uncharacterized conserved protein [Funct	100.0
KOG2172		654	consensus Uncharacterized conserved protein [Funct	94.75
PF10175		104	MPP6: M-phase phosphoprotein 6; InterPro: IPR01932	91.78

>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]	Back alignment and domain information

Probab=100.00  E-value=2e-90  Score=794.45  Aligned_cols=496  Identities=39%  Similarity=0.556  Sum_probs=371.1

Q ss_pred             CCCCcHHHHHHHHHhhhCCCCccccccccccccccccCCCCCccCCCCCCCCCCCccchhhhcccccCCcchhHHHHHHH
Q 005223          143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH  222 (707)
Q Consensus       143 ~~~ddd~~H~klL~~I~sl~~~~~~~~kr~k~~~~tEa~~eSEF~l~~~~~~g~~klsL~DLL~~l~~~~~~~~lkKqLk  222 (707)
                      ++++++.+|.+||+.|++|++....+. ++++..+++.+.+|||+|++.+  +.++|+|+|||++|. ++.+..++++|.
T Consensus        14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~   89 (735)
T PF04615_consen   14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK   89 (735)
T ss_pred             ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence            556789999999999999988754332 2344455577789999998642  245999999999999 789999999999


Q ss_pred             HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCccchhhhhccCCCCCHHHHH
Q 005223          223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK  301 (707)
Q Consensus       223 ~l~kk~k~L~~PL~k~~qdRieRkaAYe~tkkel~KW~~~Vk~NR~AE~L~FP~-~~~~~~~t~~~~~s~fkP~TeLEke  301 (707)
                      .+.++..+|++|||+++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus        90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~  169 (735)
T PF04615_consen   90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE  169 (735)
T ss_pred             HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence            998888889999999999999999999999999999999999999999999998 4455677888999999999999999


Q ss_pred             HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 005223          302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE  380 (707)
Q Consensus       302 I~~lL~~s~l~-~~~ked~~e~L~~~kmS~EE~k~RraELrkmR~LmfreEaKAKRiKKIKSKtYHRI~KKek~K~~~ke  380 (707)
                      |++||+.+++. .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus       170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~  249 (735)
T PF04615_consen  170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE  249 (735)
T ss_pred             HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence            99999999998 45555678899999999999999999999999999999999999999999999999999999988776


Q ss_pred             h----ccCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 005223          381 M----LMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS  456 (707)
Q Consensus       381 ~----E~DPE~A~Ee~Ek~E~~RAeERMTLKHKNtSKWAK~~~krG~~k~D~etR~ai~EQLr~~eELrrKi~g~~~~ss  456 (707)
                      |    +.||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||.+...+++
T Consensus       250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~  329 (735)
T PF04615_consen  250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS  329 (735)
T ss_pred             HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            6    379999999999999999999999999999999999999999999999999999999999999999999765443


Q ss_pred             CCCC-CCcccccccCC--CCcHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 005223          457 SDDS-SDEDDVDENSA--GSDQDRASKLYATAKEKTLKVLAE-DDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEY  532 (707)
Q Consensus       457 sDes-~~e~D~dedsd--~~D~d~~~~l~~kake~~L~~Le~-d~~~p~kGLm~MkFMqrAeerrreen~ee~~~~lrEl  532 (707)
                      ++++ +++++++.+++  +.+......+...     +..+.. ....+.+|||+|+||++|++++++++.+++..+++||
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~~El  404 (735)
T PF04615_consen  330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKK-----LEKLKEEEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELRREL  404 (735)
T ss_pred             ccccccccccchhhhccccccccCHHHHHHh-----hhhhhhcccchhhhhccchHHHHhhHHhHHHHHHHHHHHHHHHH
Confidence            3221 11111111111  0011100111111     222221 1222378999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCcc-cccccccCCcccccCCcccccCCCCccccCCCCCCCCCcchhhhhhccccCCCCccccccccccc
Q 005223          533 ESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNVKTD  611 (707)
Q Consensus       533 e~~l~~~e~~~~ee-~~~~~~~~GRRvfgp~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (707)
                      ++.    +++..+. ...+..+.||++||++.......+......+   .........++......+.....+....+  
T Consensus       405 e~~----~~~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~~~~~---~~~~k~e~~sd~~~~~~~~~~~~~~~~~~--  475 (735)
T PF04615_consen  405 EEE----ESEDEEEEEENEEKNVGRRKFGPGSSEKAKESKKDSKEN---KSESKEEKSSDEEEDKENKMEDKVEKEEN--  475 (735)
T ss_pred             hhh----hhcccccccccccccccccccccccccccccccchhhhh---hhhhhhccccccccccccccccccccccc--
Confidence            852    2222211 1245678999999996522222211111110   11111111111111111100000011111  


Q ss_pred             cceecccCCCCCCcccccccccccCCCCCcceeEeeecccccccccc
Q 005223          612 SFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKS  658 (707)
Q Consensus       612 ~~~~~~d~~~~~~~~~~~~~~iv~~pgpktt~ev~~~as~swkk~k~  658 (707)
                        ....-.................||..++++.........|++++.
T Consensus       476 --~~~~~k~~~~~~~~~~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~  520 (735)
T PF04615_consen  476 --KKKKKKSESAEDEEEKEEDDKENPWLKEESKKSKSKKKKKKKKKE  520 (735)
T ss_pred             --ccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence              000112233333445567889999999999999999999999873

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>COG5644 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2172 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2172 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		707
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 64/507 (12%), Positives = 134/507 (26%), Gaps = 125/507 (24%)

Query: 36  GEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPL--PQEESRKNR 93
           GE + +    L       +D  +   +    + I S E     E +  +      S   R
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-----EIDHIIMSKDAVSGTLR 66

Query: 94  RFDPVENYEYELPEKFEDENVLSDD--------EDDNNDIENNCGRRGISKQVGDEFQDG 145
            F  + + + E+ +KF +E VL  +        + +          R   +Q    + D 
Sbjct: 67  LFWTLLSKQEEMVQKFVEE-VLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDN 123

Query: 146 D-----NDERH------------LRMLQGVT--GMPSEFFEGKKKKKNVVISEAYPESEF 186
                 N  R             LR  + V   G+      G    K  V  +     + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SG----KTWVALDVCLSYKV 176

Query: 187 NPTRDVLDGN------GQI-SIDDLLEPLQGKSGYSKLRKRMHQMRKKSTSVLAPLPKPE 239
              +  +D            S + +LE LQ      ++          S+++   L    
Sbjct: 177 ---QCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWTSRSDHSSNI--KLRIHS 229

Query: 240 -QEKLERKVVYEQSKK------DITKWEP-LVKMNREAPSIYFD---------EDTNLGF 282
            Q +L R +  +  +       ++                  F+             +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV--QNAKAWN--------AFNLSCKILLTTRFKQVTD 279

Query: 283 STVGA---------IAAGFEPRTEFEKKMASLVN---DDKVKEAHKQDGSKLLELNKISV 330
               A          +    P  E +  +   ++    D  +E      +       +S+
Sbjct: 280 FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLT--TNPRR----LSI 332

Query: 331 EDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAK- 389
              + E           ++H +   ++  I   +   +L+    +     + + P +A  
Sbjct: 333 ---IAESIRDGLATWDNWKH-VNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 390 ---------EEARKQEFKRAEERMTLKHKNS--SRWAKRILKRGLDAQDEGTRAAITEQL 438
                     +  K +       +   HK S   +  K           E  +  +  + 
Sbjct: 388 PTILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENEY 443

Query: 439 QQHALLTRKMKSMKDSSSSDDSSDEDD 465
             H  +       K   S D      D
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLD 470

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00