Citrus Sinensis ID: 005234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------
MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETSEQKNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSMHPKGIQQRQ
cccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccEEEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccEEEEccccccccEEEEEEcccHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccEEEEEccccccccccc
cHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHcccccccccccccEEEEEEEccccEEEEEEEEccccEEEEEEccccHHHHHHccccccccHHcccccccccccHHHHHHcccccEEEEEEcccHHHHHEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHcccEEccccccccEEEcccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHccEEEEEEEcccEEEEEccccccHHccc
MLEKQMGSNFFRKILQNIISRaqgaspvrtlsTKEFRHFANKvgnlerpflkeffprwvgtcgcpvlrmgfsynkrKNIVELAVLRdctvkpdsrtpvlssntdsenrdgdigwpgmmSIRVHeldgmydhpilpmagdAWQLLEIQCHSKLAARralkpkkgskpdgcddngdavagldmrssmesplswiradpeMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKsrrfdeniglprpndfrdfsEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKyndnngnpysDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFdrlmpsyngilTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSveeepslrgqvKLGIHAMRICqikggsdsnhevDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILagraptlygvprdkllllgdgetseqKNVFASFVTEmrraeppmdvpnlsqdnlavrdaskevdcvanghaenilavpeaqrmqmsfptvmngkwqfqkpqrkqklfptvmkgscRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLsmhpkgiqqrq
MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVlrdctvkpdsrtpvlssntdsenrdgdigwpGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRalkpkkgskpdgcddnGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALAntaseetdwAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIkggsdsnheVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLllgdgetseqkNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLsmhpkgiqqrq
MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSklaarralkpkkGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVaqaqaiaalealPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETSEQKNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCrllrlglnnllqlVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSMHPKGIQQRQ
*********FFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTV*********************IGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLA************************************SWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDG*******VFASF*****************************VDCVANGHAENILAVPEA**MQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSM*********
*L*****SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCT***************SENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCH*************************AVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQ*************VTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLL*************************************************************************************************CRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSMH*K******
MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPD**************RDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAAR*************CDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETSEQKNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSMHPKGIQQRQ
MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRA*******************AGLD***SMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETSEQKNVFASFVT********************VRDASKEVDCVANG*AENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSM*********
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MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLLGDGETSEQKNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDASKEVDCVANGHAENILAVPEAQRMQMSFPTVMNGKWQFQKPQRKQKLFPTVMKGSCRLLRLGLNNLLQLVEQTRLIIEPLKNLKVGIMKMTVAPVVLFLSMHPKGIQQRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query707 2.2.26 [Sep-21-2011]
Q6P1X51199 Transcription initiation yes no 0.584 0.344 0.280 1e-38
Q32PW31191 Transcription initiation yes no 0.584 0.346 0.286 1e-38
Q5ZIT81168 Transcription initiation yes no 0.584 0.353 0.284 1e-38
Q8C1761104 Transcription initiation no no 0.582 0.373 0.283 5e-38
P871211172 Transcription initiation yes no 0.534 0.322 0.282 2e-37
Q243251221 Transcription initiation yes no 0.616 0.357 0.252 8e-37
P232551407 Transcription initiation yes no 0.487 0.245 0.256 2e-27
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3 Back     alignment and function desciption
 Score =  162 bits (409), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 227/478 (47%), Gaps = 65/478 (13%)

Query: 1   MLEKQMGSNFFRKILQNIISRAQGASPVR---------TLSTKEF-RHFANKVGNLERPF 50
           ++E ++   F  ++   ++S A  AS  +          +ST  F +  +N  G   +P 
Sbjct: 459 LIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPL 518

Query: 51  LKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDG 110
           +K+    WV   G       F++N+++N++EL + +D T                    G
Sbjct: 519 IKQ----WVDQSGVVKFYGSFAFNRKRNVLELEIKQDYT------------------SPG 556

Query: 111 DIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCD 170
              + G + + V ELDG ++H  L +  ++ +  +I CHSK    +  K           
Sbjct: 557 TQKYVGPLKVTVQELDGSFNH-TLQIEENSLKH-DIPCHSKSRRNKKKKIPLM------- 607

Query: 171 DNGDAVAGLDMRS-SMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA 229
            NG+ V  +D+ +   +SPL WIR DP+M  L ++ F Q   MW  QL  + DVVAQ ++
Sbjct: 608 -NGEEV-DMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQES 665

Query: 230 IAALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTA-SEETDWAGLLHLVKFY 288
           I ALE  P  +  +   L + L   + F+RVR+ A + LA  A S  + W G   +   +
Sbjct: 666 ILALEKFPTPASRLA--LTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLF 723

Query: 289 KSRRF--DENIGLPRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYN 346
            +R F       + + N+F  F  YF+ + +P A+A++R   N  P+E + F+L L+KYN
Sbjct: 724 -TRMFCCKSCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYN 782

Query: 347 DNNGNPYSDVFWLA----ALVQSVGELEFGQQSILFLSSL-------LKRIDRLLQFDRL 395
           DN  N +SD ++ A    AL  SV         +  L +L       L+ I R L  ++L
Sbjct: 783 DNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKL 842

Query: 396 MPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLD 453
           +PSY   +T+SC+R +    L+ +G +  D    L K + ++     +R+ A  A++D
Sbjct: 843 LPSYRHTITVSCLRAIR--VLQKNGHVPSDPA--LFKSYAEYGHFVDIRIAALEAVVD 896
Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.
Homo sapiens (taxid: 9606)
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2 Back     alignment and function description
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2 Back     alignment and function description
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3 Back     alignment and function description
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2 Back     alignment and function description
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
225455842 1345 PREDICTED: transcription initiation fact 0.868 0.456 0.800 0.0
225455844 1325 PREDICTED: transcription initiation fact 0.840 0.448 0.773 0.0
297734162 1245 unnamed protein product [Vitis vinifera] 0.780 0.443 0.842 0.0
224132980 1359 predicted protein [Populus trichocarpa] 0.881 0.458 0.751 0.0
356563105 1388 PREDICTED: transcription initiation fact 0.831 0.423 0.767 0.0
356513902 1388 PREDICTED: transcription initiation fact 0.852 0.434 0.745 0.0
449439379 1362 PREDICTED: transcription initiation fact 0.867 0.450 0.695 0.0
449516818 1362 PREDICTED: transcription initiation fact 0.867 0.450 0.695 0.0
356563107 1368 PREDICTED: transcription initiation fact 0.803 0.415 0.741 0.0
297842145 1390 membrane alanyl aminopeptidase [Arabidop 0.837 0.425 0.687 0.0
>gi|225455842|ref|XP_002273382.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/617 (80%), Positives = 540/617 (87%), Gaps = 3/617 (0%)

Query: 1    MLEKQMGSNFFRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWV 59
            MLEKQMG   FRKILQ I+ RAQ  +  +RTLSTKEFRHFANKVGNLERPFLKEFFPRWV
Sbjct: 449  MLEKQMGPESFRKILQTIVFRAQDTTRSLRTLSTKEFRHFANKVGNLERPFLKEFFPRWV 508

Query: 60   GTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMS 119
            G+CGCPVLR G SYNKRKN+VELAVLR CT  PD+ T VL+ N DSENR+ DIGWPGMMS
Sbjct: 509  GSCGCPVLRAGLSYNKRKNLVELAVLRGCTAAPDTNTMVLNGNIDSENREVDIGWPGMMS 568

Query: 120  IRVHELDGMYDHPILPMAGDAWQLLEIQCHSKLAARRALKPKKGSKPDGCDDNGDAVAGL 179
            IRVHELDGMYDHPILPMAG+ WQLLEIQCHSKLAARR  KPKKGSKPDG DDNGD V  +
Sbjct: 569  IRVHELDGMYDHPILPMAGETWQLLEIQCHSKLAARRFQKPKKGSKPDGSDDNGD-VPAV 627

Query: 180  DMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIAALEALPHL 239
            DMRS+ ESPL W+R DPE+EYLAEIHFNQP QMWINQLE+D DVVAQAQAIA LEALP L
Sbjct: 628  DMRSNTESPLLWLRVDPELEYLAEIHFNQPAQMWINQLERDKDVVAQAQAIATLEALPQL 687

Query: 240  SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGL 299
            SF+VVN LNNFLSDSKAFWRVRIEAA+ALANTASEETDWAGLLHLVKFYKSRRFD NIGL
Sbjct: 688  SFSVVNALNNFLSDSKAFWRVRIEAAFALANTASEETDWAGLLHLVKFYKSRRFDANIGL 747

Query: 300  PRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL 359
            P+PNDF DF EYFVLEAIPHA+AMVRAAD KSPREAVEFVLQLLKYNDNNGNPYSDVFWL
Sbjct: 748  PKPNDFHDFPEYFVLEAIPHAIAMVRAADKKSPREAVEFVLQLLKYNDNNGNPYSDVFWL 807

Query: 360  AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLS 419
            AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQI LKLS
Sbjct: 808  AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIGLKLS 867

Query: 420  GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLR 479
            GFI LD+V++L+KPFRDF  IWQVR+EASRALL LEFH  GID+ALSLFIK VEEEPS+R
Sbjct: 868  GFIPLDRVIELVKPFRDFQAIWQVRIEASRALLGLEFHFKGIDAALSLFIKYVEEEPSIR 927

Query: 480  GQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 539
            GQVKLG+HAMR+CQIKGGS+S++++ + TLVALL LLESRIAFNNVFLRHHLF IL+ILA
Sbjct: 928  GQVKLGVHAMRLCQIKGGSESDNDIKSSTLVALLRLLESRIAFNNVFLRHHLFCILRILA 987

Query: 540  GRAPTLYGVPRDKLLLLGDGE-TSEQKNVFASFVTEMRRAEPPMDVPNLSQDNLAVRDAS 598
            GR PTLYGVPRD++  +   E  SEQKN F + V E +  EPP+D PN+S D LA+ +AS
Sbjct: 988  GRLPTLYGVPRDQIPQMDPAEICSEQKNGFITIVKETKSLEPPVDTPNVSHDGLALPEAS 1047

Query: 599  KEVDCVANGHAENILAV 615
            +E D V+N H   +  V
Sbjct: 1048 READTVSNSHERKMPVV 1064

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455844|ref|XP_002273351.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734162|emb|CBI15409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132980|ref|XP_002321457.1| predicted protein [Populus trichocarpa] gi|222868453|gb|EEF05584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356563105|ref|XP_003549806.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356513902|ref|XP_003525647.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449439379|ref|XP_004137463.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516818|ref|XP_004165443.1| PREDICTED: transcription initiation factor TFIID subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563107|ref|XP_003549807.1| PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297842145|ref|XP_002888954.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297334795|gb|EFH65213.1| membrane alanyl aminopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query707
TAIR|locus:2031571 1390 TAF2 "TBP-associated factor 2" 0.820 0.417 0.664 6.1e-207
DICTYBASE|DDB_G0292724 2044 taf2 "TFIID subunit" [Dictyost 0.489 0.169 0.308 5.4e-51
POMBASE|SPAC3A12.05c1172 taf2 "TATA-binding protein ass 0.318 0.191 0.291 1.6e-31
UNIPROTKB|E2QT191202 TAF2 "Uncharacterized protein" 0.485 0.285 0.279 3.3e-31
UNIPROTKB|F1NKW6770 F1NKW6 "Uncharacterized protei 0.452 0.415 0.291 3.6e-31
UNIPROTKB|K7GP241100 TAF2 "Uncharacterized protein" 0.452 0.290 0.291 4.2e-31
UNIPROTKB|Q6P1X51199 TAF2 "Transcription initiation 0.452 0.266 0.291 4.2e-31
UNIPROTKB|F6UTN81206 TAF2 "Uncharacterized protein" 0.452 0.265 0.291 5.6e-31
ZFIN|ZDB-GENE-030131-32071191 taf2 "TAF2 RNA polymerase II, 0.483 0.287 0.281 8.3e-31
MGI|MGI:24430281104 Taf2 "TAF2 RNA polymerase II, 0.451 0.288 0.296 8.4e-31
TAIR|locus:2031571 TAF2 "TBP-associated factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1987 (704.5 bits), Expect = 6.1e-207, Sum P(2) = 6.1e-207
 Identities = 388/584 (66%), Positives = 456/584 (78%)

Query:     1 MLEKQMGSNFFRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWV 59
             MLEKQMGS+ FRKILQ IISRA+  S  +R+LSTKEFR FANK+GNLERPFLKEFF RWV
Sbjct:   450 MLEKQMGSDSFRKILQKIISRAKDPSNSIRSLSTKEFRQFANKIGNLERPFLKEFFQRWV 509

Query:    60 GTCGCPVLRMGFSYNKRKNIVELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMS 119
              + GCPVLR+G SYNKRKN VE+A LR+CT   D+R  V+ + +DSE+RD D GWPG+MS
Sbjct:   510 ASYGCPVLRIGLSYNKRKNNVEMAALRECTAALDARLSVIGATSDSESRDVDAGWPGIMS 569

Query:   120 IRVHELDGMYDHPILPMAGDAWQLLEIQCHSXXXXXXXXXXXXGSKPDGCDDNGDAVAGL 179
             IRV+ELDGM DHP LPMAGD WQLLE+ CHS            G KPDG +DN DA+A L
Sbjct:   570 IRVYELDGMSDHPKLPMAGDRWQLLELPCHSKLAAKRYQKPKKGGKPDGAEDNVDAIAPL 629

Query:   180 DMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVXXXXXXXXXXXXPHL 239
             + ++S+ESPL+WI+ADPEMEY+AEIH +QP+QMW+NQLEKDGDVV               
Sbjct:   630 ENKTSIESPLAWIKADPEMEYIAEIHLHQPLQMWVNQLEKDGDVVAQAQAIASLEALKQH 689

Query:   240 SFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGL 299
             SF++VN L N L+DSK FWR+RI AA+ALA TASEE+DWAGL HL+KFYKSRRFD  IGL
Sbjct:   690 SFSIVNALKNVLTDSKVFWRIRIAAAFALAKTASEESDWAGLQHLIKFYKSRRFDAEIGL 749

Query:   300 PRPNDFRDFSEYFVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWL 359
             P+PNDFRDF EYFVLEAIPHA+A+VR A+ KSPREAVEF+LQLLKYNDN+GN YSDVFWL
Sbjct:   750 PKPNDFRDFPEYFVLEAIPHAIAIVRGAEGKSPREAVEFILQLLKYNDNSGNSYSDVFWL 809

Query:   360 AALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLS 419
             A LVQSVG+LEF QQS+ FL+ LLKRIDRLLQFDRLMPSYNGILTISCIRTL Q ALKLS
Sbjct:   810 AVLVQSVGDLEFCQQSLTFLAPLLKRIDRLLQFDRLMPSYNGILTISCIRTLAQTALKLS 869

Query:   420 GFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHCNGIDSALSLFIKSVEEEPSLR 479
               IS D + KLI+PFR+ +TI Q+R+E SRALLD+E+   GI SAL LF+K + EE SLR
Sbjct:   870 DSISFDHICKLIEPFRNSDTILQIRIEGSRALLDIEYQSKGISSALLLFMKYLVEESSLR 929

Query:   480 GQVKLGIHAMRICQIKGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILA 539
             GQVKL +H MR+CQI  G DS+  VDTVTL+ LL+L +S + FNN  LR++LF I QILA
Sbjct:   930 GQVKLCVHTMRLCQIAVGCDSDDCVDTVTLLDLLHLFKSHVVFNNELLRYYLFCIFQILA 989

Query:   540 GRAPTLYGVPRDKLLLLGDGETS-EQKNVFASFVTEMRRAEPPM 582
             GR PTL+GVP++K L L D E   E KNVF   V      EP +
Sbjct:   990 GRPPTLFGVPKEKPLQLVDVEACIEPKNVF--LVPGAEAGEPSL 1031
GO:0005634 "nucleus" evidence=ISM
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0292724 taf2 "TFIID subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC3A12.05c taf2 "TATA-binding protein associated factor Taf2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKW6 F1NKW6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K7GP24 TAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2443028 Taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_XV0072
hypothetical protein (1359 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVIII.2077.1
hypothetical protein (132 aa)
    • • 0.469

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
cd09839507 cd09839, M1_TAF2, TATA binding protein (TBP) assoc 5e-21
pfam1364688 pfam13646, HEAT_2, HEAT repeats 4e-04
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 Back     alignment and domain information 
 Score = 96.7 bits (241), Expect = 5e-21
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 12/86 (13%)

Query: 1   MLEKQMGSNFFRKILQNIISRAQGAS---------PVRTLSTKEFRHFANKVGNLERPFL 51
           MLE+++G   F ++L  I+SRA  AS             LST+ F     KV       L
Sbjct: 425 MLERRIGKESFLQVLNKILSRALQASQQKTQSGDWSQMLLSTESFFKTCEKV---SGKEL 481

Query: 52  KEFFPRWVGTCGCPVLRMGFSYNKRK 77
           K FF +WV   GCP  R+ F +N+++
Sbjct: 482 KVFFQQWVYGSGCPKFRVSFRFNRKR 507

This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 707
KOG19321180 consensus TATA binding protein associated factor [ 100.0
PRK14015875 pepN aminopeptidase N; Provisional 99.75
TIGR02414863 pepN_proteo aminopeptidase N, Escherichia coli typ 99.7
COG0308859 PepN Aminopeptidase N [Amino acid transport and me 99.23
PRK09687280 putative lyase; Provisional 98.78
TIGR02412831 pepN_strep_liv aminopeptidase N, Streptomyces livi 98.75
TIGR02270410 conserved hypothetical protein. Members are found 98.44
PRK09687280 putative lyase; Provisional 98.29
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.08
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.66
KOG1046882 consensus Puromycin-sensitive aminopeptidase and r 97.54
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 97.43
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.37
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.37
KOG19321180 consensus TATA binding protein associated factor [ 97.32
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.11
TIGR02270410 conserved hypothetical protein. Members are found 95.99
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 95.48
COG1413335 FOG: HEAT repeat [Energy production and conversion 94.72
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.26
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 93.66
PF11940367 DUF3458: Domain of unknown function (DUF3458); Int 93.29
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 92.65
PTZ00429 746 beta-adaptin; Provisional 90.32
KOG0567289 consensus HEAT repeat-containing protein [General 88.24
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 87.23
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 86.97
smart0056730 EZ_HEAT E-Z type HEAT repeats. Present in subunits 85.14
PF0313027 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP 82.18
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2e-105  Score=920.38  Aligned_cols=519  Identities=32%  Similarity=0.532  Sum_probs=452.3

Q ss_pred             ccChHHHHHHHHHHHHhhcCCC-CCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEEEEE
Q 005234            5 QMGSNFFRKILQNIISRAQGAS-PVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIVELA   83 (707)
Q Consensus         5 ~iG~e~F~rvL~k~L~~A~~~~-~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~VEL~   83 (707)
                      .-|.-...+++++++.+.|+++ .++.++++.|+++|+.++..   .++.||++|||+.|+|.++++++||+|++.||+.
T Consensus       441 ~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~~~~~---~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~Ie~~  517 (1180)
T KOG1932|consen  441 LSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLELASKM---LLKSFFQTWVYGLGVPILRLGQRFNVKGKDIEMG  517 (1180)
T ss_pred             cChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhhh---HHHHHHHHHHhccCCeeEEEEEEEeeccccccHH
Confidence            3466778899999999999887 78889999999999988742   2699999999999999999999999999999999


Q ss_pred             EEeccC-CCCCC--CCC----cccC-----CCCCCCCCCCccceeEEEEEEEEcCceEEEEecccCCCcceEEEEeccch
Q 005234           84 VLRDCT-VKPDS--RTP----VLSS-----NTDSENRDGDIGWPGMMSIRVHELDGMYDHPILPMAGDAWQLLEIQCHSK  151 (707)
Q Consensus        84 IkQ~q~-~~~~~--~~~----~~~~-----~~~~~~~~~~~~FtGPltIRIhE~DGtyeH~V~~i~~d~~~k~eIp~nsK  151 (707)
                      |.|-.. +..++  ..+    ..++     ++|-.  .+.+.|+|||||||||.||||+|+++  +++.+++.|||||||
T Consensus       518 i~Q~v~~~~~A~~sv~~~~n~~rna~~~~~~qD~~--~g~~~~~GpmtIrv~ElDGtfeH~lq--i~~~~~k~dI~chsK  593 (1180)
T KOG1932|consen  518 IDQWVRTGGHAPFSVFSDFNRKRNALEHEIKQDYT--AGNEKYTGPMTIRVQELDGTFEHTLQ--IDGDFTKLDIQCHSK  593 (1180)
T ss_pred             HHHHhhhccccceeeecccchhhhhhhhhcccccc--CCCceeccceEEEEEeecCcceeeEE--ecCcccccceeeccc
Confidence            999322 21111  111    1111     12111  22356999999999999999999985  678899999999999


Q ss_pred             hhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHHHH
Q 005234          152 LAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQAIA  231 (707)
Q Consensus       152 ~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEAI~  231 (707)
                         +|++|+||.+..+|||+++|. ++||    .++|++|||+|||+||||+|+++||+|||++||++||||+||+|||+
T Consensus       594 ---~R~~kkKk~~l~sgEE~e~dl-~~~d----~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~  665 (1180)
T KOG1932|consen  594 ---SRRQKKKKVPLMSGEEIEMDL-TNMD----EESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIE  665 (1180)
T ss_pred             ---ccccCCcCCCCCChhhhcccc-cccC----ccCceeEEEeCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHH
Confidence               567888999999999999884 4665    38999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHhcCCCccHHHHHHHHHHHhcccccccccchHHHHHHHHHhccCCCCCCCCCCCCCCChhHH
Q 005234          232 ALEALPHLSFNVVNTLNNFLSDSKAFWRVRIEAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRPNDFRDFSEY  311 (707)
Q Consensus       232 aL~~~p~~s~~~v~aL~rtL~D~ryFygVR~eAA~ALak~a~~~~~~~Gl~~Lik~Fk~~~~~~~s~iPkpNdFsdf~~Y  311 (707)
                      +|++.|++  ..+++|+|+|.|++||||||++||+||+++++++.+|.|++||+++|++.||+.+++|||||||+||++|
T Consensus       666 ~le~~p~~--~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Y  743 (1180)
T KOG1932|consen  666 SLEALPST--ASRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEY  743 (1180)
T ss_pred             HHHcCCcc--hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHH
Confidence            99999987  4779999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccCCCChHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHhhcccccccchH-------------H
Q 005234          312 FVLEAIPHAVAMVRAADNKSPREAVEFVLQLLKYNDNNGNPYSDVFWLAALVQSVGELEFGQQSIL-------------F  378 (707)
Q Consensus       312 fVqkAIp~ALa~vRd~~g~~P~ev~~fLldlLkyNDNS~N~ysDs~YvA~lI~ALg~~~~~~~~~~-------------~  378 (707)
                      |||||||.|++.+|+.+|+||++|++||||||||||||+|.|||.||+|+||+||+...++..+..             +
T Consensus       744 fvq~~iP~a~a~lR~~~g~cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~  823 (1180)
T KOG1932|consen  744 FVQCAIPVAFASLRGREGKCPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRD  823 (1180)
T ss_pred             HHHHhhHHHHHHhccccCCChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhH
Confidence            999999999999999999999999999999999999999999999999999999999876644322             2


Q ss_pred             HHHHHHHHHHHHhcCcCCCCcccHhHHHHHHHHHHHHHHhcCCCChHHHHHhhhcccCCCCcHHHHHHHHHHhhhhhhcc
Q 005234          379 LSSLLKRIDRLLQFDRLMPSYNGILTISCIRTLTQIALKLSGFISLDQVVKLIKPFRDFNTIWQVRVEASRALLDLEFHC  458 (707)
Q Consensus       379 l~~vl~eI~R~l~lD~~~PSY~~vVTvacL~~L~~L~~~~~g~i~~d~~~~ll~~yt~~g~~~~vRiaA~~aL~~l~~~~  458 (707)
                      ...+++|++|+|++|+++|||.++|+++||.++.+++  ..|++|.++  ..+..|+.+|.+.++|++|++++++++.. 
T Consensus       824 ~~~~~~ei~r~L~~e~l~pS~k~ii~~~~l~~~~~l~--k~~hl~s~p--~~~~~~a~~~~~vd~r~~a~~~~v~~~~~-  898 (1180)
T KOG1932|consen  824 VRVLIDEITRLLNMEKLMPSFKHIIKVSALKAIRELQ--KSGHLPSLP--ELLESYAEEGSFVDVRICAEELNVDLGGV-  898 (1180)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhceEEeeechhhhhhh--hccccccCc--hhhhccccccchhhhHHHhhhhhhhhccc-
Confidence            3458999999999999999999999999999999987  588999887  35789999999999999999999999864 


Q ss_pred             CChhHHHHHHHHHHhcCccchhhhHHHHHhhhHHHh-----hCCCCCCCCCCcHHHHHHHHHhccccccccchhhhhHHH
Q 005234          459 NGIDSALSLFIKSVEEEPSLRGQVKLGIHAMRICQI-----KGGSDSNHEVDTVTLVALLNLLESRIAFNNVFLRHHLFG  533 (707)
Q Consensus       459 ~g~~~al~~~l~~l~~dp~~r~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~l~~~~~~~~~~d~~lR~~~~~  533 (707)
                      +|.-+.+.+++++++.||+|-.|+++.    ++.+-     ..++ ..|.++.+.+++++|.+++.....|..+||.+++
T Consensus       899 ~~~~~~l~~~leil~~~~dp~~R~~i~----~ml~~~~np~~~~~-~~s~~~~~~~~~~~~~~~~~~k~~D~~~r~~v~d  973 (1180)
T KOG1932|consen  899 DGSPDDLAYILEILENDPDPVIRHKIL----DMLSQSNNPVTKGG-TESDLLKEALVERLWKLKNLSKEPDICSRSSVLD  973 (1180)
T ss_pred             CCChHHHHHHhhhcccCcchHHHHHHH----HHhhccCCceeecc-ccCccccHHHHHhhhhhhccCCCCCeEeEeehhh
Confidence            455688999999999999997665443    44443     2333 4799999999999999999989999999999988


Q ss_pred             HHHHhhcCCCcccCCCCCcccccC
Q 005234          534 ILQILAGRAPTLYGVPRDKLLLLG  557 (707)
Q Consensus       534 ~~~~L~g~~~~l~g~~~~~~~~~~  557 (707)
                      +       |.+|||..++.++..+
T Consensus       974 ~-------~~~L~~~~~~~~~~a~  990 (1180)
T KOG1932|consen  974 V-------YIALFGLGRPNILGAP  990 (1180)
T ss_pred             h-------hhheeecCCcccccch
Confidence            8       8899999966555444

>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>smart00567 EZ_HEAT E-Z type HEAT repeats Back     alignment and domain information
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query707
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.1 bits (181), Expect = 1e-13
 Identities = 90/558 (16%), Positives = 169/558 (30%), Gaps = 134/558 (24%)

Query: 197 EMEYLAEIHFNQPVQMWINQLEKD---GDVVAQAQAIAALEALPHLSFNVVNTLNNFLSD 253
           E +Y     +   + ++ +    +    DV    ++I + E + H    ++ + +     
Sbjct: 13  EHQY----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGT 64

Query: 254 SKAFWRVRI--EAAYALANTASEETDWAGLLHLVKFYKSRRFDENIGLPRP--------- 302
            + FW +    E             ++       KF  S    E                
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 303 ---NDFRDFSEYFV-----LEAIPHAVAMVRAADN----------KSPREAVEFVLQLLK 344
              ND + F++Y V        +  A+  +R A N          K+   A++ V    K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALD-VCLSYK 175

Query: 345 YNDNNGNPYSDVFWLAALVQSVGELEFGQQSILFLSSLLKRIDRLLQFDRLMPSYNGILT 404
                      +FWL     ++      +  +  L  LL +ID      R   S N  L 
Sbjct: 176 VQCKMDFK---IFWL-----NLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLR 226

Query: 405 ISCIRTLTQIALKLSGF----ISLDQV--VKLIKPF----------RDFNTIWQVRVEAS 448
           I  I+   +  LK   +    + L  V   K    F          R    +      A+
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAAT 285

Query: 449 RALLDLEFHCNGI--DSALSLFIKSVEEEPS-LRGQVKLGIHAMRICQI----KGGSDSN 501
              + L+ H   +  D   SL +K ++  P  L  +V    +  R+  I    + G  + 
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATW 344

Query: 502 HEVDTVTLVALLNLLESRIAFNNVFLRHHLFGILQILAGRAPTLYGVPRDKLLLL-GDGE 560
                V    L  ++ES +          +F  L +    A     +P   L L+  D  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILLSLIWFDVI 400

Query: 561 TSEQKNVFASFVT----EMRRAEPPMDVPNLSQDNLAVRDASKEV--------------- 601
            S+   V          E +  E  + +P++  +     +    +               
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 602 --DCVANG-----------HAENILAVPEAQRMQMSFPTV-MNGKWQFQKPQRKQKLFPT 647
             D +              H +NI      +RM + F  V ++ ++       +QK+   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIE---HPERMTL-FRMVFLDFRFL------EQKIRHD 510

Query: 648 VMKGSCRLLRLGLNNLLQ 665
               +       + N LQ
Sbjct: 511 ---STAWNASGSILNTLQ 525
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query707
3b34_A891 Aminopeptidase N; protease, hydrolase, thermolysin 99.8
3ebh_A889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 99.64
2gtq_A867 Aminopeptidase N; alanine aminopeptidase, M1 famil 99.64
1z5h_A780 Tricorn protease interacting factor F3; zinc amino 99.05
2xdt_A897 Endoplasmic reticulum aminopeptidase 1; glycoprote 99.0
4fke_A909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 98.69
3se6_A967 Endoplasmic reticulum aminopeptidase 2; thermolysi 98.63
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.48
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.29
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.25
3u9w_A608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 98.18
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 97.93
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 97.89
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.81
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.77
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.76
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.58
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.28
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.15
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.78
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.56
4fgm_A597 Aminopeptidase N family protein; structural genomi 96.34
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.31
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.18
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.05
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.01
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.85
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.68
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.55
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.51
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.44
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.2
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.62
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 94.58
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 94.58
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.44
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 94.39
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 94.21
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.92
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 93.59
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 93.36
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.28
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 93.19
1qgr_A876 Protein (importin beta subunit); transport recepto 92.5
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 92.46
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 91.82
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 91.64
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 90.9
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 90.5
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 90.29
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 89.46
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 89.39
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 88.96
1qgr_A 876 Protein (importin beta subunit); transport recepto 88.74
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.28
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.02
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 87.65
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 87.05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 86.47
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 86.34
2db0_A253 253AA long hypothetical protein; heat repeats, hel 86.31
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 85.6
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 84.96
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 83.3
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 81.8
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
Probab=99.80  E-value=2.3e-17  Score=195.84  Aligned_cols=174  Identities=16%  Similarity=0.180  Sum_probs=142.3

Q ss_pred             ChhhccChHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhHHhhhccCCCcceEEEEEEEeCCccEE
Q 005234            1 MLEKQMGSNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEFFPRWVGTCGCPVLRMGFSYNKRKNIV   80 (707)
Q Consensus         1 MLek~iG~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~FFdQWVygsG~P~f~Vs~~FNkKr~~V   80 (707)
                      |||..+|++.|+++|+.|+.++.    .++++|+||..++|+++   |.||++ |++|++++|+|.++|+..|+.+++.+
T Consensus       411 ML~~~lG~e~F~~gLr~Yl~~~~----~~~att~Df~~ale~~s---g~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~  482 (891)
T 3b34_A          411 MIHTLLGEENFQKGMQLYFERHD----GSAATCDDFVQAMEDAS---NVDLSH-FRRWYSQSGTPIVTVKDDYNPETEQY  482 (891)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT----TEEECHHHHHHHHHHHH---CCCCTT-TTHHHHCCSCCEEEEEEEEETTTTEE
T ss_pred             HHHHHHCHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHh---CCCHHH-HHHHHcCCCCceEEEEEEeecCCCEE
Confidence            89999999999999999999984    55899999999999999   568998 58999999999999999999888899


Q ss_pred             EEEEEeccCCCCCCCCCcccCCCCCCCCCCCccceeEEEEEEEEcCceEE----------EEecccCCCcceEEEEe-cc
Q 005234           81 ELAVLRDCTVKPDSRTPVLSSNTDSENRDGDIGWPGMMSIRVHELDGMYD----------HPILPMAGDAWQLLEIQ-CH  149 (707)
Q Consensus        81 EL~IkQ~q~~~~~~~~~~~~~~~~~~~~~~~~~FtGPltIRIhE~DGtye----------H~V~~i~~d~~~k~eIp-~n  149 (707)
                      +++|+|.+....              .......|..|++|.+...||...          +.++  +++..++|+|+ ++
T Consensus       483 ~ltl~Q~~~~~~--------------~~~~~~~~~iPi~v~l~~~~G~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~v~  546 (891)
T 3b34_A          483 TLTISQRTPATP--------------DQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLN--VTQAEQTFVFDNVY  546 (891)
T ss_dssp             EEEEEEECCCBT--------------TBSCCCCCCEEEEEEEECTTSCBCCCEETTEECCSEEE--ECSSEEEEEECCCC
T ss_pred             EEEEEEecCCCC--------------CCCCCceEEEEEEEEEEcCCCCcccccccccccceEEE--ecCCcEEEEEccCC
Confidence            999999763210              001123588999999998888631          2221  34455555555 22


Q ss_pred             chhhHHhhcCCCCCCCCCCCCCCCcccccccccccCCCCccEEEEcCCCceEEEEeccCCHHHHHHHHhhCCChHHHHHH
Q 005234          150 SKLAARRALKPKKGSKPDGCDDNGDAVAGLDMRSSMESPLSWIRADPEMEYLAEIHFNQPVQMWINQLEKDGDVVAQAQA  229 (707)
Q Consensus       150 sK~k~rR~~K~Kk~~~~~g~e~~~D~~~~~d~~~~~~~p~eWIRvDpd~ewL~~V~~~QPd~Mw~sQLq~DrDVvAQlEA  229 (707)
                      .+                                    |  ||++|+++....+|+.++++++|++||++|+|+.+|.||
T Consensus       547 ~~------------------------------------P--~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a  588 (891)
T 3b34_A          547 FQ------------------------------------P--VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDA  588 (891)
T ss_dssp             SC------------------------------------C--EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHH
T ss_pred             CC------------------------------------C--cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHH
Confidence            22                                    1  899999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q 005234          230 IAALEAL  236 (707)
Q Consensus       230 I~aL~~~  236 (707)
                      ++.|.+.
T Consensus       589 ~~~L~~~  595 (891)
T 3b34_A          589 AQSLLAT  595 (891)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999764
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query707
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 98.57
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.65
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.43
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 96.68
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.44
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.28
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.23
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.02
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.23
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 92.07
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 91.03
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 90.45
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 88.11
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 87.74
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 87.19
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 86.67
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.7e-09  Score=102.54  Aligned_cols=64  Identities=16%  Similarity=0.435  Sum_probs=57.9

Q ss_pred             ChhhccC-hHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHhcCCCccChhhH----HhhhccCCCcceEEEEE
Q 005234            1 MLEKQMG-SNFFRKILQNIISRAQGASPVRTLSTKEFRHFANKVGNLERPFLKEF----FPRWVGTCGCPVLRMGF   71 (707)
Q Consensus         1 MLek~iG-~e~F~rvL~k~L~~A~~~~~~~tlsT~dFrr~~EkVsg~~g~dL~~F----FdQWVygsG~P~f~Vs~   71 (707)
                      |||+.+| ++.|.++|+.|+.+.    ..+++++.||..++++++   ++++++|    |++|++++|+|.++|+|
T Consensus       184 mL~~~iG~~~~f~~~lr~yl~~~----~~~~~~~~df~~~l~~~~---~~~~~~~~~~~f~~W~~~~G~P~l~v~~  252 (252)
T d3b7sa3         184 YLEQLLGGPEIFLGFLKAYVEKF----SYKSITTDDWKDFLYSYF---KDKVDVLNQVDWNAWLYSPGLPPIKPNY  252 (252)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH----TTEEECHHHHHHHHHHHT---GGGHHHHTTSCHHHHHHCCSSCSSCCCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHh---ccccchhhHhHHHHHhcCCCCCeeeccC
Confidence            8999999 578999999999998    356999999999999999   5789998    99999999999998865
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure