Citrus Sinensis ID: 005237

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------
MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSATTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSSTTDTTGVAATNASSNPPSVDITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGQQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
cccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEEccc
cccccccHHHHccccEEEcccccccccccccccccHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccHHHHcccccccHHHHHHHHHcccccccccHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHccccEEEEEEEcHHccccccHHHcccccccEEEEEHHHHHccccccHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEcccc
mramplafedfqgkgaldfsssssdsrqfHHQQHKEEQDWllsnsnrgnkkanccyvgsatteptsvldnrrspspptssstlssslggggssttdttgvaatnassnppsvditntekcgglgmedwesvlsgspnqEQSILRLImgdtddpslglnkilhqdtefnagfgvvdqaslgfetpftsvssnidpdfvvnsarlgsvstqNHIFSMaaatnlspppsvfqpqpvealdekpqifrpqlimnqnqvqyaqnpalflplsyaqmqehqllsppppkrlnlgpnqkvplsdsgqQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLnhqlspvvkpFQRAAFYVKEALQLLLHMnmntpsaamsgYNIIFKISayksfseispiLQFANFTCNQALLEAFEgcnrihiidfdigyggQWASLMQELVfrsegppslkitaftsssthdefelGFTQENLKHFASEINIPFELEILSLETLisaswplplqglendvtavnlpigvfsnypatFPLVLRFVKQLQPKIVVSldrscdrpdfpfahHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIekivlgrhrsperlppwrslfmqsgfapltfsnfaESQAdclvqrtpvrgfhvekRQSSLVLCWQRKELISATAWRC
MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSAtteptsvldnrrspspptssstlssslggggSSTTDTTGVAatnassnppsvdiTNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGQQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHvekrqsslvlcwqRKELISATAWRC
MRAMPLAFEDFQGKGALdfsssssdsrqfhhqqhKEEQDWLLSNSNRGNKKANCCYVGSATTEPTSVLDNRRspspptssstlssslggggssttdttgVAATNASSNPPSVDITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLspppsvfqpqpvEALDEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGqqelylrrqqqqqlqmlqqrqTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFeleilsletlisASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
****************************************************NCCYVG***********************************************************************************ILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFS***************************IFRPQLIMNQNQVQYAQNPALFLPLSYA***********************************************************************QQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSE****LKITAFT***THDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAW**
****PLAFEDFQGKGALDFSSSS******************************CCYVGSATT*********************************************************CGGLGMEDWESVLSGSPNQEQSILRLIMGDTD*****************************************************************************************************************************************************************************************************DQIFKAAELIEMGNPVLAQGILARLNHQLSP*VKPFQRAAFYVKEALQLLLHMN*************IFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQEL*****GPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
MRAMPLAFEDFQGKGAL**********************WLLSNSNRGNKKANCCYVGSATTE********************************DTTGVAATNASSNPPSVDITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGQQELYLRR*******************TATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
***MPLAFEDFQGKGALDFSS**SDSRQF**QQHKEEQDWLLSNSNRG*KKANCCYVGSATTEPTSV*********************************************************MEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQ******EKPQIFRPQLIM*QNQVQY*******LPLS***************************************************************************LQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
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MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSATTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSSTTDTTGVAATNASSNPPSVDITNTEKCGGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSDSGQQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query706 2.2.26 [Sep-21-2011]
O81316558 Scarecrow-like protein 6 yes no 0.773 0.978 0.443 1e-137
Q9M000623 Scarecrow-like protein 22 no no 0.835 0.947 0.421 1e-115
Q7XJM8640 Scarecrow-like protein 27 no no 0.594 0.656 0.516 1e-109
O23210486 Scarecrow-like protein 15 no no 0.498 0.724 0.357 5e-52
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.582 0.804 0.263 2e-31
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.497 0.557 0.281 4e-31
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.495 0.593 0.280 4e-30
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.495 0.596 0.281 1e-29
Q7G7J6625 DELLA protein SLR1 OS=Ory no no 0.498 0.563 0.268 2e-29
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.495 0.656 0.283 2e-29
>sp|O81316|SCL6_ARATH Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1 Back     alignment and function desciption
 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 316/712 (44%), Positives = 393/712 (55%), Gaps = 166/712 (23%)

Query: 4   MPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSATTE 63
           MPL FE+FQGKG   FSS SS          +     LLS+      +     V +A  E
Sbjct: 1   MPLPFEEFQGKGISCFSSFSSSFP-------QPPSSPLLSHRKARGGEEEEEEVPAA--E 51

Query: 64  PTSVLDNRRSPSPPTSSSTLSSSLGGGGSSTTDTTGVAATNASSNPPSVDITNTEKCGGL 123
           PTSVLD+  S                   +++ T   +    S+     D T  E+CG +
Sbjct: 52  PTSVLDSLIS------------------PTSSSTVSSSHGGNSAVGGGGDATTDEQCGAI 93

Query: 124 GMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILH-----QDTEFNA-GFGVVDQA 177
           G+ DWE  +    + EQSIL LIMGD+ DPSL LN IL       D+++++ GFGVVD  
Sbjct: 94  GLGDWEEQVPH--DHEQSILGLIMGDSTDPSLELNSILQTSPTFHDSDYSSPGFGVVDT- 150

Query: 178 SLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALD 237
             GF     SV                                  PP  V          
Sbjct: 151 --GFGLDHHSV----------------------------------PPSHV---------- 164

Query: 238 EKPQIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLLSPPPPKRLNLGPNQKVPLSD 297
                    L++NQ+Q  Y QNPA       A    H   +PPP KRLN GP        
Sbjct: 165 -------SGLLINQSQTHYTQNPA-------AIFYGHHHHTPPPAKRLNPGP-------- 202

Query: 298 SGQQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAEL 357
                                   +G+T                       +Q+ KAAE+
Sbjct: 203 ------------------------VGIT-----------------------EQLVKAAEV 215

Query: 358 IEMGNPVLAQGILARLNHQLS-PVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNII 416
           IE  +  LAQGILARLN QLS PV KP +RAAFY KEAL  LLH      S  ++ Y++I
Sbjct: 216 IE-SDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLH----NVSQTLNPYSLI 270

Query: 417 FKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFR 476
           FKI+AYKSFSEISP+LQFANFT NQALLE+F G +R+HIIDFDIGYGGQWASLMQELV R
Sbjct: 271 FKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQWASLMQELVLR 330

Query: 477 SEGPP-SLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLP 535
               P SLKIT F S + HD+ ELGFTQ+NLKHFASEINI  ++++LSL+ L S SWP  
Sbjct: 331 DNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSLDLLGSISWP-- 388

Query: 536 LQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVH 595
               E +  AVN+    FS+     PLVLRFVK L P I+V  DR C+R D PF+  + H
Sbjct: 389 -NSSEKEAVAVNISAASFSH----LPLVLRFVKHLSPTIIVCSDRGCERTDLPFSQQLAH 443

Query: 596 ALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPER-LPPWRSLFMQSG 654
           +L S++ L ESLD+VN NLDA+QKIERFL+ P IEK+VL R R  ER +  W+++F+Q G
Sbjct: 444 SLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPMMTWQAMFLQMG 503

Query: 655 FAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC 706
           F+P+T SNF ESQA+CLVQRTPVRGFHVEK+ +SL+LCWQR EL+  +AWRC
Sbjct: 504 FSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 555
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M000|SCL22_ARATH Scarecrow-like protein 22 OS=Arabidopsis thaliana GN=SCL22 PE=2 SV=1 Back     alignment and function description
>sp|Q7XJM8|SCL27_ARATH Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1 Back     alignment and function description
>sp|O23210|SCL15_ARATH Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=3 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q7G7J6|SLR1_ORYSJ DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query706
259130059706 SCL6 [Citrus trifoliata] 0.997 0.997 0.901 0.0
255541194733 hypothetical protein RCOM_1610560 [Ricin 0.973 0.937 0.628 0.0
225454028804 PREDICTED: scarecrow-like protein 6-like 0.946 0.830 0.564 0.0
224063707732 GRAS family transcription factor [Populu 0.970 0.935 0.610 0.0
356539166742 PREDICTED: scarecrow-like protein 27-lik 0.977 0.929 0.565 0.0
449510788754 PREDICTED: scarecrow-like protein 6-like 0.949 0.888 0.548 0.0
449445696751 PREDICTED: LOW QUALITY PROTEIN: scarecro 0.950 0.893 0.544 0.0
224067637602 GRAS family transcription factor [Populu 0.827 0.970 0.571 0.0
356506481732 PREDICTED: scarecrow-like protein 6-like 0.967 0.933 0.529 0.0
224136962667 GRAS family transcription factor [Populu 0.920 0.974 0.585 0.0
>gi|259130059|gb|ACV95482.1| SCL6 [Citrus trifoliata] Back     alignment and taxonomy information
 Score = 1230 bits (3183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/708 (90%), Positives = 657/708 (92%), Gaps = 4/708 (0%)

Query: 1   MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSA 60
           MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSA
Sbjct: 1   MRAMPLAFEDFQGKGALDFSSSSSDSRQFHHQQHKEEQDWLLSNSNRGNKKANCCYVGSA 60

Query: 61  TTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSSTTDTTGVAATNASSNPPSVDITNTEKC 120
           TTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSS TDTTGVAATNASSNPPSVDITNTEKC
Sbjct: 61  TTEPTSVLDNRRSPSPPTSSSTLSSSLGGGGSSATDTTGVAATNASSNPPSVDITNTEKC 120

Query: 121 GGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLG 180
           GGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLG
Sbjct: 121 GGLGMEDWESVLSGSPNQEQSILRLIMGDTDDPSLGLNKILHQDTEFNAGFGVVDQASLG 180

Query: 181 FETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATNLSPPPSVFQPQPVEALDEKP 240
           FETPFTSVSSNIDPDFV NSARLGS S QNHIFS AAATNLSPPPSVFQPQPVEALDEKP
Sbjct: 181 FETPFTSVSSNIDPDFVGNSARLGSGSNQNHIFSTAAATNLSPPPSVFQPQPVEALDEKP 240

Query: 241 QIFRPQLIMNQNQVQYAQNPALFLPLSYAQMQEHQLL--SPPPPKRLNLGPNQKVPLSDS 298
           QIF PQLIMNQNQ QYAQNPALFLPLSYAQMQ HQLL  +PPPPKRLNLGPNQKVP SDS
Sbjct: 241 QIFSPQLIMNQNQAQYAQNPALFLPLSYAQMQVHQLLPPAPPPPKRLNLGPNQKVPFSDS 300

Query: 299 GQQELYLRRQQQQQLQMLQQRQTMGVTATATKQKMVNDELANQQLQQAVIDQIFKAAELI 358
           GQQEL+LRRQ  Q LQ  QQR+TMGVT TATKQK+VNDELANQQLQQA+ DQIFKA+ELI
Sbjct: 301 GQQELFLRRQPLQMLQ--QQRETMGVTTTATKQKLVNDELANQQLQQAITDQIFKASELI 358

Query: 359 EMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAAMSGYNIIFK 418
           E GNPV AQ ILARLNHQLSP+ KPFQRAAFY KEALQLLLHMNMN  S A+ GY+IIFK
Sbjct: 359 ETGNPVHAQEILARLNHQLSPIGKPFQRAAFYFKEALQLLLHMNMNNSSLALPGYSIIFK 418

Query: 419 ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSE 478
           ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELV RSE
Sbjct: 419 ISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVLRSE 478

Query: 479 GPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISASWPLPLQG 538
           GPPSLKITAF S STHDE EL FT+ENLKHFASEIN+PFELEILSLE L SAS  LP +G
Sbjct: 479 GPPSLKITAFASPSTHDELELSFTRENLKHFASEINMPFELEILSLEALNSASLALPFRG 538

Query: 539 LENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDRPDFPFAHHMVHALQ 598
           LE++ TAVNLPIG F NYPATFP VL FVKQL+PKIVVSLDR CDR D PF HH +HALQ
Sbjct: 539 LESEATAVNLPIGTFCNYPATFPSVLCFVKQLKPKIVVSLDRGCDRTDVPFPHHTIHALQ 598

Query: 599 SYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPL 658
           SYS LLESLD+VNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPW+SLFMQSGFAPL
Sbjct: 599 SYSCLLESLDAVNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWKSLFMQSGFAPL 658

Query: 659 TFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWRC 706
           TFSNF ESQADCLVQRTPV+GFHVEKRQSSLV CWQRKELI ATAWRC
Sbjct: 659 TFSNFTESQADCLVQRTPVKGFHVEKRQSSLVFCWQRKELILATAWRC 706

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541194|ref|XP_002511661.1| hypothetical protein RCOM_1610560 [Ricinus communis] gi|223548841|gb|EEF50330.1| hypothetical protein RCOM_1610560 [Ricinus communis] Back     alignment and taxonomy information
>gi|225454028|ref|XP_002274837.1| PREDICTED: scarecrow-like protein 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063707|ref|XP_002301269.1| GRAS family transcription factor [Populus trichocarpa] gi|222842995|gb|EEE80542.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539166|ref|XP_003538071.1| PREDICTED: scarecrow-like protein 27-like [Glycine max] Back     alignment and taxonomy information
>gi|449510788|ref|XP_004163758.1| PREDICTED: scarecrow-like protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445696|ref|XP_004140608.1| PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224067637|ref|XP_002302518.1| GRAS family transcription factor [Populus trichocarpa] gi|222844244|gb|EEE81791.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506481|ref|XP_003522010.1| PREDICTED: scarecrow-like protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|224136962|ref|XP_002326988.1| GRAS family transcription factor [Populus trichocarpa] gi|222835303|gb|EEE73738.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query706
TAIR|locus:2126901558 HAM3 "AT4G00150" [Arabidopsis 0.492 0.623 0.603 2.8e-127
TAIR|locus:2055622640 HAM1 "AT2G45160" [Arabidopsis 0.504 0.556 0.543 1e-107
TAIR|locus:2101801623 HAM2 "AT3G60630" [Arabidopsis 0.531 0.601 0.527 4e-106
TAIR|locus:2115340486 HAM4 "AT4G36710" [Arabidopsis 0.498 0.724 0.352 3.2e-49
UNIPROTKB|Q6DLS1461 SCL1 "SCARECROW-like protein" 0.495 0.759 0.349 4.2e-47
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.502 0.607 0.286 3.6e-29
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.525 0.696 0.279 5.2e-28
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.502 0.694 0.273 1.5e-27
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.536 0.645 0.271 1.2e-26
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.522 0.705 0.268 2e-26
TAIR|locus:2126901 HAM3 "AT4G00150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1078 (384.5 bits), Expect = 2.8e-127, Sum P(3) = 2.8e-127
 Identities = 219/363 (60%), Positives = 265/363 (73%)

Query:   347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLS-PVVKPFQRAAFYVKEALQLLLHMNMNT 405
             + +Q+ KAAE+IE  +  LAQGILARLN QLS PV KP +RAAFY KEAL  LLH N+  
Sbjct:   205 ITEQLVKAAEVIE-SDTCLAQGILARLNQQLSSPVGKPLERAAFYFKEALNNLLH-NV-- 260

Query:   406 PSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQ 465
              S  ++ Y++IFKI+AYKSFSEISP+LQFANFT NQALLE+F G +R+HIIDFDIGYGGQ
Sbjct:   261 -SQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDIGYGGQ 319

Query:   466 WASLMQELVFRSEGPP-SLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFXXXXXXX 524
             WASLMQELV R    P SLKIT F S + HD+ ELGFTQ+NLKHFASEINI         
Sbjct:   320 WASLMQELVLRDNAAPLSLKITVFASPANHDQLELGFTQDNLKHFASEINISLDIQVLSL 379

Query:   525 XXXXXASWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFVKQLQPKIVVSLDRSCDR 584
                   SWP      E +  AVN+    FS+     PLVLRFVK L P I+V  DR C+R
Sbjct:   380 DLLGSISWP---NSSEKEAVAVNISAASFSH----LPLVLRFVKHLSPTIIVCSDRGCER 432

Query:   585 PDFPFAHHMVHALQSYSGLLESLDSVNVNLDALQKIERFLVYPCIEKIVLGRHRSPER-L 643
              D PF+  + H+L S++ L ESLD+VN NLDA+QKIERFL+ P IEK+VL R R  ER +
Sbjct:   433 TDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSRPIERPM 492

Query:   644 PPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATA 703
               W+++F+Q GF+P+T SNF ESQA+CLVQRTPVRGFHVEK+ +SL+LCWQR EL+  +A
Sbjct:   493 MTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSA 552

Query:   704 WRC 706
             WRC
Sbjct:   553 WRC 555
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI
GO:0030154 "cell differentiation" evidence=IMP
GO:0048768 "root hair cell tip growth" evidence=IMP
GO:0051301 "cell division" evidence=IMP
GO:0007623 "circadian rhythm" evidence=IEP
TAIR|locus:2055622 HAM1 "AT2G45160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101801 HAM2 "AT3G60630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115340 HAM4 "AT4G36710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DLS1 SCL1 "SCARECROW-like protein" [Brassica napus (taxid:3708)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026418001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (750 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021344001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (577 aa)
      • 0.483
AP2
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (511 aa)
      • 0.483
GSVIVG00001720001
SubName- Full=Chromosome chr13 scaffold_120, whole genome shotgun sequence; (551 aa)
      • 0.483

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query706
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-121
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  365 bits (940), Expect = e-121
 Identities = 136/372 (36%), Positives = 188/372 (50%), Gaps = 15/372 (4%)

Query: 348 IDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLL-----HMN 402
           +  +   AE +  G+  LAQ ILARLN   SP   P QR A Y  EAL   L      + 
Sbjct: 2   VHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSIY 61

Query: 403 MNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGY 462
              P +  +  + +  ++AYK F E+SP L+F +FT NQA+LEAFEG  R+HIIDFDIG 
Sbjct: 62  SALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIGQ 121

Query: 463 GGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEIL 522
           G QW SL+Q L  R  GPP L+IT   S       EL  T + L  FA  + +PFE   L
Sbjct: 122 GLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNPL 181

Query: 523 SLETLISASWPLPLQGLENDVTAVNLPIGVFSNYPATF----PLVLRFVKQLQPKIVVSL 578
             + L        L     +  AVN    +      +     P  LR VK L PK+V  +
Sbjct: 182 VAKRLEDLD-LEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVTLV 240

Query: 579 DRSCDRPDFPFAHHMVHALQSYSGLLESLD-SVNVNLDALQKIERFLVYPCIEKIVL--G 635
           ++  +    PF    V AL  YS L +SL+ ++  + +  +K+ER L+   I  +V   G
Sbjct: 241 EQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACEG 300

Query: 636 RHRS--PERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCW 693
             R    E    WR    ++GF P+  S FA  QA  L++   V G+ VE+   SLVL W
Sbjct: 301 AERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSLVLGW 360

Query: 694 QRKELISATAWR 705
           + + L++A+AWR
Sbjct: 361 KGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 706
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.86
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.79
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.47
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 95.11
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 90.33
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.14
PLN02336475 phosphoethanolamine N-methyltransferase 89.04
PRK08317241 hypothetical protein; Provisional 88.57
PRK12335287 tellurite resistance protein TehB; Provisional 87.47
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 87.32
PLN02233261 ubiquinone biosynthesis methyltransferase 87.25
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 87.08
PRK11207197 tellurite resistance protein TehB; Provisional 86.95
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 86.91
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 86.57
PRK06202232 hypothetical protein; Provisional 85.33
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 83.01
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 81.39
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-98  Score=810.68  Aligned_cols=358  Identities=36%  Similarity=0.543  Sum_probs=323.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHHhccCCCCccC-----CCchhHHHHHHH
Q 005237          347 VIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQRAAFYVKEALQLLLHMNMNTPSAA-----MSGYNIIFKISA  421 (706)
Q Consensus       347 Lv~lLl~CAeAVesgn~~~A~~iLa~L~~~aSp~Gdp~QRlA~YFaeAL~~RL~~~~~~~~~~-----~sp~~~~~~i~A  421 (706)
                      |+++|++||+||++||.+.|+.+|++|++++||+|||+||+|+||++||.+||.+++...+..     .++.....++.|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999976554421     122234567889


Q ss_pred             HHHHHhhCCccchhHHHHHHHHHHhhccCceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHH
Q 005237          422 YKSFSEISPILQFANFTCNQALLEAFEGCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGF  501 (706)
Q Consensus       422 yk~f~e~sP~lkFAhftANQAILEA~eG~~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~  501 (706)
                      |+.||++|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||+|++|.+.+..++++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986666678999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEeecccccccCCCCCCCCCCCceEEEecCc--ccccCC----CCCHHHHHHHHHhcCCcEE
Q 005237          502 TQENLKHFASEINIPFELEILSLETLISASWPLPLQGLENDVTAVNLPI--GVFSNY----PATFPLVLRFVKQLQPKIV  575 (706)
Q Consensus       502 tg~rL~~fA~~lgVpFEF~~V~lesL~~~~~~l~Lr~~~dEaLAVN~~~--~~l~~~----p~~~~~vL~~IRsL~PkVV  575 (706)
                      ||+||.+||+++||||||+.|..++++.... ..|++.+||+|||||++  |.+...    ..+++.||+.||+|+|+||
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vv  239 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVV  239 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEE
Confidence            9999999999999999999975444433211 24677899999999986  444321    2468899999999999999


Q ss_pred             EEeecCCCCCCCChHHHHHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHhhhhhHhhhhc----cccCCCCChhhHHHHH
Q 005237          576 VSLDRSCDRPDFPFAHHMVHALQSYSGLLESLDSVNV-NLDALQKIERFLVYPCIEKIVL----GRHRSPERLPPWRSLF  650 (706)
Q Consensus       576 VlvEqeadhns~~F~~RF~EAL~yYsAlFDSLDa~~~-~~d~R~~IEr~llg~eI~nIVa----~R~ERhE~~~~Wr~Rm  650 (706)
                      |++|+|+|||+++|++||.|||+||+++|||||++.. ..++|.++|+.+|+++|+|||+    +|+||||++++|+.||
T Consensus       240 v~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~  319 (374)
T PF03514_consen  240 VLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRM  319 (374)
T ss_pred             EEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHH
Confidence            9999999999999999999999999999999999753 4578999999999999999998    6999999999999999


Q ss_pred             HhCCCccccCChhhHHHHHHHHhhCCCCCcEEEeeCCEEEEEECCceEEEEeeec
Q 005237          651 MQSGFAPLTFSNFAESQADCLVQRTPVRGFHVEKRQSSLVLCWQRKELISATAWR  705 (706)
Q Consensus       651 ~rAGF~pvpLS~~a~~QAk~LL~~~~~~Gf~Veed~g~LlLgWk~rpLisvSAWr  705 (706)
                      ++|||+++|+|.+++.||++||+++.++||+|++++|||+||||++||+++||||
T Consensus       320 ~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  320 RRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999998889999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query706
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.2 bits (176), Expect = 4e-13
 Identities = 98/657 (14%), Positives = 180/657 (27%), Gaps = 208/657 (31%)

Query: 162 HQDTEFNA-GFGVVDQASLGFETPFTSVSSNIDPDFVVNSARLGSVSTQNHIFSMAAATN 220
           H D E     +   D  S+ FE  F     N D   V +  +         I S     +
Sbjct: 6   HMDFETGEHQYQYKDILSV-FEDAFVD---NFDCKDVQDMPK--------SILSKEEIDH 53

Query: 221 LSPPPSVFQPQPVEALDEKPQIFRPQLIMNQNQVQYAQNPAL-----FLPLSYAQMQEHQ 275
           +     +     V       ++F   L   +  VQ      L     FL    + ++  +
Sbjct: 54  I-----IMSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKT-E 101

Query: 276 LLSPPPPKRLNLGPNQKVPLSDSGQ--QELYLRRQQQ-QQLQ--MLQQRQTMGVT----A 326
              P    R+ +   Q+  L +  Q   +  + R Q   +L+  +L+ R    V      
Sbjct: 102 QRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 327 TATKQKMVNDELANQQLQQAVIDQIFKAAELIEMGNPVLAQGILARLNHQLSPVVKPFQR 386
            + K  +  D   + ++Q  +  +IF     + + N    + +L  L             
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQ------------ 203

Query: 387 AAFYVKEALQLLLHMNMNTPSAAMSGYNIIFKISAYKSFSEISPILQFANFT-------- 438
                    +LL  ++ N  S +    NI  +I + ++  E+  +L+   +         
Sbjct: 204 ---------KLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLN 252

Query: 439 -CNQALLEAFE-GCNRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLK--ITAFTSSSTH 494
             N     AF   C +I +             +   L   +    SL       T     
Sbjct: 253 VQNAKAWNAFNLSC-KILLTTRF-------KQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 495 DEFE--LGFTQENLKHFASEINIPFELEILS--------------------LETLISASW 532
                 L    ++L       N P  L I++                    L T+I +S 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS- 362

Query: 533 PLPLQGLENDVT------------AVNLPIGVFS----NYPATFP-----------LVLR 565
              L  LE                + ++P  + S    +   +             LV +
Sbjct: 363 ---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 566 FVK---------------------QLQPKIV--VSLDRSCDRPDFP-----------FAH 591
             K                      L   IV   ++ ++ D  D               H
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 592 HMVHALQSYSGLLESLDSVNVNLDALQ-KIER-----------------FLVYPCIEKIV 633
           H+ +        +     V ++   L+ KI                      Y   +  +
Sbjct: 480 HLKNIEH--PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYI 534

Query: 634 LGRHRSPERLPPWRSLFMQSGFAPLTFSNFAESQADCLVQR---TPVRGFHVEK-RQ 686
                  ERL    +  +   F P    N   S+   L++            E  +Q
Sbjct: 535 CDNDPKYERL---VNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query706
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 96.87
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.82
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.18
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.69
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.32
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 94.21
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.7
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.65
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.26
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.23
3hnr_A220 Probable methyltransferase BT9727_4108; structural 93.02
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.4
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 92.25
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 92.01
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 91.68
3m70_A286 Tellurite resistance protein TEHB homolog; structu 91.58
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 90.86
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 90.61
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.4
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 90.3
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 90.19
3gu3_A284 Methyltransferase; alpha-beta protein, structural 89.69
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 89.53
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 89.49
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 88.95
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 88.94
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 88.89
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 88.88
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 88.37
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 88.19
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 88.01
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 87.9
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 87.19
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 86.94
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 86.9
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 86.31
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 85.82
3ocj_A305 Putative exported protein; structural genomics, PS 85.45
3ege_A261 Putative methyltransferase from antibiotic biosyn 85.36
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 85.29
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 84.73
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 84.44
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 84.36
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 84.3
1wy7_A207 Hypothetical protein PH1948; seven-stranded beta s 84.28
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 83.54
3hm2_A178 Precorrin-6Y C5,15-methyltransferase; alpha-beta-s 82.88
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 82.51
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 82.42
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 82.42
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 82.36
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 82.3
3f4k_A257 Putative methyltransferase; structural genomics, P 82.13
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 81.86
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 81.79
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 81.74
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 81.41
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 80.67
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 80.2
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=96.87  E-value=0.0058  Score=62.13  Aligned_cols=170  Identities=9%  Similarity=0.122  Sum_probs=88.9

Q ss_pred             eeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeecccccccC
Q 005237          452 RIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISAS  531 (706)
Q Consensus       452 rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~~  531 (706)
                      .-+|+|+|.|.|.    +...|+++- +.|..+||||+.+    +.-|+.+.+++.++.  ...+++|..-.+.+     
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s----~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~-----  134 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNS----PAMIERCRRHIDAYK--APTPVDVIEGDIRD-----  134 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESC----HHHHHHHHHHHHTSC--CSSCEEEEESCTTT-----
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECC----HHHHHHHHHHHHhhc--cCceEEEeeccccc-----
Confidence            3479999999884    445566443 3567899999964    223555555554321  22345554322211     


Q ss_pred             CCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEE-eecCCCCCCCChHHHHHHHHHHHHHHhhhhhc
Q 005237          532 WPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVS-LDRSCDRPDFPFAHHMVHALQSYSGLLESLDS  609 (706)
Q Consensus       532 ~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVl-vEqeadhns~~F~~RF~EAL~yYsAlFDSLDa  609 (706)
                          +...+-++|+.|+.++.+..  ..+..+|+.| |.|+|..+++ +|.-.. .++.+...+.+ +++.......+..
T Consensus       135 ----~~~~~~d~v~~~~~l~~~~~--~~~~~~l~~i~~~LkpGG~lii~e~~~~-~~~~~~~~~~~-~~~~~~~~~g~s~  206 (261)
T 4gek_A          135 ----IAIENASMVVLNFTLQFLEP--SERQALLDKIYQGLNPGGALVLSEKFSF-EDAKVGELLFN-MHHDFKRANGYSE  206 (261)
T ss_dssp             ----CCCCSEEEEEEESCGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEEBCC-SSHHHHHHHHH-HHHHHHHHTTGGG
T ss_pred             ----ccccccccceeeeeeeecCc--hhHhHHHHHHHHHcCCCcEEEEEeccCC-CCHHHHHHHHH-HHHHHHHHcCCCH
Confidence                22224467777877764421  2355678776 6799998665 454322 12222222222 1111111111111


Q ss_pred             CCCChHHHHHHHHHhhhhhHhhhhccccCCCCChhhHHHHHHhCCCccccC
Q 005237          610 VNVNLDALQKIERFLVYPCIEKIVLGRHRSPERLPPWRSLFMQSGFAPLTF  660 (706)
Q Consensus       610 ~~~~~d~R~~IEr~llg~eI~nIVa~R~ERhE~~~~Wr~Rm~rAGF~pvpL  660 (706)
                      .. -...+..         ++++     -+..+.+.++.+|++|||..+.+
T Consensus       207 ~e-i~~~~~~---------l~~~-----~~~~s~~~~~~~L~~AGF~~ve~  242 (261)
T 4gek_A          207 LE-ISQKRSM---------LENV-----MLTDSVETHKARLHKAGFEHSEL  242 (261)
T ss_dssp             ST-THHHHHH---------HHHH-----CCCBCHHHHHHHHHHHTCSEEEE
T ss_pred             HH-HHHHHhh---------hccc-----ccCCCHHHHHHHHHHcCCCeEEE
Confidence            00 0001111         2232     34567889999999999987643
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query706
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.34
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 95.86
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 95.64
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.02
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 93.33
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 92.82
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.28
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.08
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 91.05
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 90.12
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 86.67
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 85.86
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 85.14
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 84.55
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 82.13
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 81.88
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 80.62
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 80.46
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.34  E-value=0.02  Score=53.56  Aligned_cols=106  Identities=14%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             ceeEEEecccccccchHHHHHHHhcCCCCCCcEEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCcEEEEEeeccccccc
Q 005237          451 NRIHIIDFDIGYGGQWASLMQELVFRSEGPPSLKITAFTSSSTHDEFELGFTQENLKHFASEINIPFELEILSLETLISA  530 (706)
Q Consensus       451 ~rVHIIDFgIg~G~QWpsLIQaLA~R~gGPPsLRITgI~~pss~~~~eL~~tg~rL~~fA~~lgVpFEF~~V~lesL~~~  530 (706)
                      ..-||+|+|.|.|.    +...|+.. -..|..+||||+.+    +.-|+.+.+++.    ..+....++.+..+ ..  
T Consensus        39 ~~~~vLDlGCGtG~----~~~~l~~~-~~~~~~~v~giD~S----~~ml~~A~~~~~----~~~~~~~~~~~~~d-~~--  102 (225)
T d1im8a_          39 ADSNVYDLGCSRGA----ATLSARRN-INQPNVKIIGIDNS----QPMVERCRQHIA----AYHSEIPVEILCND-IR--  102 (225)
T ss_dssp             TTCEEEEESCTTCH----HHHHHHHT-CCCSSCEEEEECSC----HHHHHHHHHHHH----TSCCSSCEEEECSC-TT--
T ss_pred             CCCEEEEeccchhh----HHHHHHHh-hcCCCCceEEeCCC----HHHHHHHHHHhH----hhcccchhhhccch-hh--
Confidence            44589999998884    33445533 23468899999964    223555555554    33444333333211 11  


Q ss_pred             CCCCCCCCCCCceEEEecCcccccCCCCCHHHHHHHH-HhcCCcEEEEe
Q 005237          531 SWPLPLQGLENDVTAVNLPIGVFSNYPATFPLVLRFV-KQLQPKIVVSL  578 (706)
Q Consensus       531 ~~~l~Lr~~~dEaLAVN~~~~~l~~~p~~~~~vL~~I-RsL~PkVVVlv  578 (706)
                          .+...+..+++.+..++.+..  .....+|+.| |.|+|.-.+++
T Consensus       103 ----~~~~~~~d~i~~~~~l~~~~~--~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         103 ----HVEIKNASMVILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             ----TCCCCSEEEEEEESCGGGSCG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             ----ccccccceeeEEeeeccccCh--hhHHHHHHHHHHhCCCCceeec
Confidence                122223345555655554321  3456788887 78999997665
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure