Citrus Sinensis ID: 005242

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------

MSNRDIVDLCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLASSYSMPRSGIHQPVVWDQSSTATGITKAPAAAPCQLAAPNSCFVEGAGPLTPNSEGIIGQRSRKRKGCRDSLEFEKVKMQASKGVDAVDDEPSAETHPAVTSTDQLRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPIKNE

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccHHHHHcccEEEEEEEEEcccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEcccccEEEEEEEEccccccEEEEEEEcHHHHHHcccccEEEEcccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEccccccccccccccccccccccccccHHHHHcccEEEccccccccccccccccEEEEEcccEEEEEcHHccccccccEEccccccccccccEEEEEEEEcccccccccEEEEEEcccccccccHHcccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc

cccHHHEEccccccccccccEEEEccccccccccHHHccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEcccccccccccccccEEEEEEccccccccEEEHHHHHHHHHHcccccEEEEcccccccccccEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEEEcccccEEEcccccccHEEcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEccEEccHHHHHHcccccEEEEcccccccccEEEEEEEEEEcccccccEEEEEEEEcccEEEcEEEccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHccccHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

msnrdivdlcsddedgqvdeisiklepdsvggtmqqkyyykddpaehwksksqprkqdseekkssnalstgqssnsvleqgqspvddtgisssssicpaplcrqfwkagnyedrlgskatlqngknflhvhpmflhsnatshkWAFGAIAELLDNAIDEIQNGAAFVIVdkisnprdgtpalliqddgggmdpeAMRRCmsfgfsdkksksvigqygngfktssmrlGADVIVFSRHLNDRTLTQSIGLLSYTFLtrtghdrivvpmVDYElntstgtvnalhgrdhFTLNLSLLlqwspyssetELLKQFDDIGHHGTKIIIYnlwfsdggnmeldfdsdpediriagdvinkfdpgafrQLHEQHIANRFHYSLRVYLSILYLripesfsikLRGKAVehhniandlkypefilyrpqsagclegtvittigflkdaphisihgfnvyhknrlILPFWQVVSYsyrdsrgrgvVGVLEanfiepthskqdferTSLFQKLETRLKEMTWEYWDYHCELIgyqrkkkpqpsisplassysmprsgihqpvvwdqsstatgitkapaaapcqlaapnscfvegagpltpnsegiigqrsrkrkgcrdSLEFEKVKMQaskgvdavddepsaethpavtstdqlRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPIKNE

msnrdivdlcsddedgqvdeisiklepdsvggtmQQKYYYkddpaehwksksqprkqdseeKKSSnalstgqssnsvleqGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFiepthskqdfertsLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLASSYSMPRSGIHQPVVWDQSSTATGITKAPAAAPCQLAAPNSCFVEGAGPltpnsegiigqrsrkrkgcrDSLEFEKVkmqaskgvdavddepsaethpavtstdqlrDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAelkaldpikne

MSNRDIVDLCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLASSYSMPRSGIHQPVVWDQSSTATGITKapaaapcqlaapNSCFVEGAGPLTPNSEGIIGQRSRKRKGCRDSLEFEKVKMQASKGVDAVDDEPSAETHPAVTSTDQLRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPIKNE

***********************************************************************************************ICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISN*******LLI***************************VIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQ**************************VVW********I*****AAPCQLAAPNSCFVE*****************************************************************TIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAE**********

***RDIV********************************************************************************************PLCRQFWKAGNY*****************HVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM****************GNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFD*G*F***HEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGY*******************************************************************************************************************************************************************NCEYERLMAELKAL******

MSNRDIVDLCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDP**************************************************SICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQ***********LASSYSMPRSGIHQPVVWDQSSTATGITKAPAAAPCQLAAPNSCFVEGAGPLTPNSEGI***********RDSLEFEKVKMQ***********************DQLRDSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPIKNE

******V**C**DEDGQVDEISIKLEP******************************************************************SSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVI***DPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQR***********************************************************************************************************************DSATIILMQENEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPI***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSNRDIVDLCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLASSYSMPRSGIHQPVVWDQSSTATGITKAPAAAPCQLAAPNSCFVEGAGPLTPNSEGIIGQRSRKRKGCRDSLEFEKVKMQASKGVDAVDDEPSAETHPAVTSTDQLRDSATIILMQExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKALDPIKNE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		706	2.2.26 [Sep-21-2011]
Q14149		939	MORC family CW-type zinc	yes	no	0.512	0.385	0.384	2e-59
Q8BMD7		928	MORC family CW-type zinc	no	no	0.535	0.407	0.351	4e-55
Q8TE76		937	MORC family CW-type zinc	no	no	0.507	0.382	0.363	6e-54
Q86VD1		984	MORC family CW-type zinc	no	no	0.494	0.354	0.308	5e-35
Q9WVL5		950	MORC family CW-type zinc	no	no	0.371	0.275	0.342	3e-33
Q9Y6X9		1032	MORC family CW-type zinc	no	no	0.362	0.248	0.327	4e-33
Q8C5W4		1022	MORC family CW-type zinc	no	no	0.287	0.198	0.371	7e-33
Q69ZX6		1030	MORC family CW-type zinc	no	no	0.362	0.248	0.324	1e-32

>sp\|Q14149\|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3	Back alignment and function desciption

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/390 (38%), Positives = 216/390 (55%), Gaps = 28/390 (7%)

Query: 132 PMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGGM 191
           P FLH+N+TSH W F A+AEL+DNA D   N     I   + N       L   D+G GM
Sbjct: 16  PKFLHTNSTSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVINDH---ICLTFTDNGNGM 72

Query: 192 DPEAMRRCMSFGFSDKKSKS---VIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIG 248
             + + + +SFGFSDK + +    +G YGNGFK+ SMRLG D IVF+++      + S+G
Sbjct: 73  TSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGE----SMSVG 128

Query: 249 LLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELL 308
           LLS T+L     + +VVP+V +  N     +N    +     +L+ +L+ S +S+E +LL
Sbjct: 129 LLSQTYLEVIKAEHVVVPIVAF--NKHRQMINLAESK----ASLAAILEHSLFSTEQKLL 182

Query: 309 KQFDDI-GHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVIN-KFDPGAFRQLHEQ 366
            + D I G  GT+III+NL  S     E DF+ D  DIRI  D+       G  +Q    
Sbjct: 183 AELDAIIGKKGTRIIIWNLR-SYKNATEFDFEKDKYDIRIPEDLDEITGKKGYKKQERMD 241

Query: 367 HIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLE 426
            IA    YSLR Y SILYL+      I LRG+ V+   ++  L Y E  +YRP+    L 
Sbjct: 242 QIAPESDYSLRAYCSILYLK--PRMQIILRGQKVKTQLVSKSLAYIERDVYRPKF---LS 296

Query: 427 GTVITTIGF-LKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIE 485
            TV  T GF  ++  H   +G  +YH+NRLI  + +V      ++ G GVVG++E NF++
Sbjct: 297 KTVRITFGFNCRNKDH---YGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIECNFLK 353

Query: 486 PTHSKQDFERTSLFQKLETRLKEMTWEYWD 515
           PTH+KQDF+ T+ ++   T L E   +YW+
Sbjct: 354 PTHNKQDFDYTNEYRLTITALGEKLNDYWN 383

Homo sapiens (taxid: 9606)

>sp\|Q8BMD7\|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2	Back alignment and function description

>sp\|Q8TE76\|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2	Back alignment and function description

>sp\|Q86VD1\|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2	Back alignment and function description

>sp\|Q9WVL5\|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y6X9\|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2	Back alignment and function description

>sp\|Q8C5W4\|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2	Back alignment and function description

>sp\|Q69ZX6\|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		706
225456973		709	PREDICTED: MORC family CW-type zinc fing	0.994	0.990	0.672	0.0
255540611		717	zinc finger protein, putative [Ricinus c	0.929	0.914	0.667	0.0
224133598		653	predicted protein [Populus trichocarpa]	0.909	0.983	0.623	0.0
356508687		688	PREDICTED: MORC family CW-type zinc fing	0.963	0.988	0.608	0.0
449520171		686	PREDICTED: LOW QUALITY PROTEIN: MORC fam	0.947	0.975	0.573	0.0
224121834		518	predicted protein [Populus trichocarpa]	0.702	0.957	0.737	0.0
297844872		663	hypothetical protein ARALYDRAFT_472130 [	0.895	0.953	0.571	0.0
42562162		663	Histidine kinase-, DNA gyrase B-, and HS	0.915	0.974	0.564	0.0
296087630		631	unnamed protein product [Vitis vinifera]	0.866	0.969	0.593	0.0
356564992		637	PREDICTED: MORC family CW-type zinc fing	0.869	0.963	0.520	0.0

>gi\|225456973\|ref\|XP_002278685.1\| PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera] gi\|297733753\|emb\|CBI15000.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/712 (67%), Positives = 553/712 (77%), Gaps = 10/712 (1%)

Query: 1   MSNRDIVDLCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSE 60
           MS  DIVDLCSDDE  +VD   +KLEP+ +   +Q    ++   A++  SK+  R Q+SE
Sbjct: 1   MSFPDIVDLCSDDEHVEVDVKPVKLEPNIIEREIQLFKCHEILQAQYQLSKTHCRTQESE 60

Query: 61  EKKSSNALSTGQSSNSVLEQGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKAT 120
           E + SNALST QSS S+L+QGQSP+DDT +SS+S ICPAPLCRQFWKAGNY+D LGSK T
Sbjct: 61  ENRDSNALSTAQSSTSILDQGQSPMDDTSLSSTSPICPAPLCRQFWKAGNYDDELGSKVT 120

Query: 121 LQNGKNFLHVHPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTP 180
           LQNGKN+LHVHPMFLHSNATSHKWAFGAIAELLDNA+DEIQNGA FVIVDK SNPRDG+P
Sbjct: 121 LQNGKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGSP 180

Query: 181 ALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLND 240
           ALLIQDDGGGM PEAMR CMSFGFSDKKSKS IGQYGNGFKTSSMRLGADVIVFSRHL++
Sbjct: 181 ALLIQDDGGGMGPEAMRCCMSFGFSDKKSKSAIGQYGNGFKTSSMRLGADVIVFSRHLDN 240

Query: 241 RTLTQSIGLLSYTFLTRTGHDRIVVPMVDYELNTSTGTVNALH--GRDHFTLNLSLLLQW 298
             LTQS GLLSY+FL +TGHDRIVVPMVDYE NTST  +  LH  G+ HFT NLS+LL+W
Sbjct: 241 GKLTQSAGLLSYSFLRQTGHDRIVVPMVDYEFNTSTSNMEPLHRYGKKHFTSNLSILLRW 300

Query: 299 SPYSSETELLKQFDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPG 358
           SPYS+E ELLKQFDDIG+HGTK++IYNLWFSD GN+ELDFDSDPEDIRI GD+       
Sbjct: 301 SPYSTEQELLKQFDDIGYHGTKVVIYNLWFSDDGNVELDFDSDPEDIRIGGDIKQVTTIP 360

Query: 359 AFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYR 418
           A++ ++EQHIANRFH SLRVYLSILYLRIP++F+I LRGK VEHHNIANDLK+PEFILYR
Sbjct: 361 AWKTINEQHIANRFHISLRVYLSILYLRIPQNFNIILRGKVVEHHNIANDLKFPEFILYR 420

Query: 419 PQSAGCLEGTVITTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGV 478
           PQ+ G +EGTV+TTIGFLK+AP ++IHGFNVYHKNRLILPFWQVV+YS  DSRGRGVVGV
Sbjct: 421 PQTGGLVEGTVVTTIGFLKEAPQVNIHGFNVYHKNRLILPFWQVVNYS--DSRGRGVVGV 478

Query: 479 LEANFIEPTHSKQDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQPSISPLAS 538
           LEANFIEP H+KQDFERTSLFQKLE RLKEMTWEYWDYHC LIGYQ KKKP+  +SP  S
Sbjct: 479 LEANFIEPIHNKQDFERTSLFQKLEGRLKEMTWEYWDYHCGLIGYQVKKKPRTLVSPHIS 538

Query: 539 SYSMPRSGIHQPVVWDQSSTATGITKA--PAAAPCQLAAPNS-CFVEGAG-PLTPNSEGI 594
           S+  P   + +P+  +QSS A G  KA  P  A    AA  S C     G P+T +    
Sbjct: 539 SHGSPHIAMEKPIGLNQSSPAIGNIKATPPGGAFQHPAATASHCLAGRPGEPITDSQSRS 598

Query: 595 IGQRSRKRKGCRDSLEFEKVKMQASKGVDAVDDEPSAETHPAVTSTDQLRDSATIILMQE 654
               S KR      +E EK K    K +  V D  S ET P     +  +D   + LMQE
Sbjct: 599 QQGASLKRTEHDHPVEPEKKKHAGIKEI--VTDTHSQETQPVDIFANHSKDQEAMTLMQE 656

Query: 655 NEKLRAKCLEYEKRRVELDQKVTQLKSELGEYNCEYERLMAELKALDPIKNE 706
           N+KL A+CLEYEKR  EL  K+ QL++EL E + E  RL+AEL+ LD IK+E
Sbjct: 657 NKKLHAQCLEYEKREKELSVKMIQLRNELREVHNEQARLLAELQHLDAIKDE 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255540611\|ref\|XP_002511370.1\| zinc finger protein, putative [Ricinus communis] gi\|223550485\|gb\|EEF51972.1\| zinc finger protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224133598\|ref\|XP_002321614.1\| predicted protein [Populus trichocarpa] gi\|222868610\|gb\|EEF05741.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356508687\|ref\|XP_003523086.1\| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449520171\|ref\|XP_004167107.1\| PREDICTED: LOW QUALITY PROTEIN: MORC family CW-type zinc finger protein 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224121834\|ref\|XP_002318684.1\| predicted protein [Populus trichocarpa] gi\|222859357\|gb\|EEE96904.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297844872\|ref\|XP_002890317.1\| hypothetical protein ARALYDRAFT_472130 [Arabidopsis lyrata subsp. lyrata] gi\|297336159\|gb\|EFH66576.1\| hypothetical protein ARALYDRAFT_472130 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42562162\|ref\|NP_173344.2\| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana] gi\|62320246\|dbj\|BAD94510.1\| hypothetical protein [Arabidopsis thaliana] gi\|332191681\|gb\|AEE29802.1\| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|296087630\|emb\|CBI34886.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356564992\|ref\|XP_003550729.1\| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		706
TAIR\|locus:2011226		663	DMS11 "DEFECTIVE IN MERISTEM S	0.756	0.805	0.637	1.7e-202
TAIR\|locus:2122254		626	CRH1 "CRT1 Homologue 1" [Arabi	0.657	0.741	0.515	9.9e-131
TAIR\|locus:2122264		635	CRT1 "compromised recognition	0.610	0.678	0.534	3.8e-127
TAIR\|locus:2163320		819	AT5G50780 [Arabidopsis thalian	0.575	0.495	0.472	3.5e-121
TAIR\|locus:2117358		707	AT4G24970 [Arabidopsis thalian	0.621	0.620	0.522	6.4e-115
TAIR\|locus:2179837		708	AT5G13130 [Arabidopsis thalian	0.686	0.685	0.452	1.6e-104
TAIR\|locus:2122244		486	AT4G36270 "AT4G36270" [Arabido	0.451	0.656	0.457	9.6e-76
UNIPROTKB\|F1PFJ7		939	MORC3 "Uncharacterized protein	0.511	0.384	0.388	5.6e-58
UNIPROTKB\|F1P2D9		926	MORC3 "Uncharacterized protein	0.536	0.409	0.378	5.7e-58
UNIPROTKB\|Q14149		939	MORC3 "MORC family CW-type zin	0.511	0.384	0.393	6.6e-58

TAIR\|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1809 (641.9 bits), Expect = 1.7e-202, Sum P(2) = 1.7e-202
 Identities = 353/554 (63%), Positives = 420/554 (75%)

Query:    11 SDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALST 70
             S D    V   ++  +P+   GTM Q +     P  H  SK     QDSEE + S   S 
Sbjct:     2 SHDRSVNVSHDAVIAKPER--GTMLQSF----SPRSHG-SKGYSLPQDSEENRGSVGQSA 54

Query:    71 GQSSNSVLEQGQSPVDDTGISSSSSICPAPLCRQFWKAGNYEDRLGSKATLQNGKNFLHV 130
             GQSS SV++Q +SP DD G++SSS+ICPAP+CRQFWKAG+Y D L SK+   NGKN+LHV
Sbjct:    55 GQSSTSVVDQVRSPADDAGVTSSSTICPAPVCRQFWKAGSYNDELSSKSQQPNGKNYLHV 114

Query:   131 HPMFLHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVDKISNPRDGTPALLIQDDGGG 190
             HPMFLHSNATSHKWAFGA+AELLDNA+DEIQNGA FVIVDK +NPRDG  ALLIQDDGGG
Sbjct:   115 HPMFLHSNATSHKWAFGAVAELLDNAVDEIQNGATFVIVDKTTNPRDGATALLIQDDGGG 174

Query:   191 MDPEAMRRCMSFGFSDKKSKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLL 250
             MDP+AMR CM FGFSDKKS S IG+YGNGFKTS+MRLGADVIVFSRH  ++TLTQSIGLL
Sbjct:   175 MDPQAMRHCMGFGFSDKKSDSAIGRYGNGFKTSTMRLGADVIVFSRHSKNQTLTQSIGLL 234

Query:   251 SYTFLTRTGHDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQ 310
             SYT+LTRTGHDRIVVP++DYE N S G    L  R+HF  +LS+LL+WSP+S+E ELL+Q
Sbjct:   235 SYTYLTRTGHDRIVVPILDYEFNASAGEFKTLQDREHFISSLSILLEWSPFSTEAELLQQ 294

Query:   311 FDDIGHHGTKIIIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIAN 370
             FDD+G HGTK+IIYN+W +    +ELDFDS  EDI I G  I K   G+  ++   HIA+
Sbjct:   295 FDDVGPHGTKVIIYNMWLNSDAKLELDFDSVAEDILIEGS-IKK--TGS--KIVNDHIAS 349

Query:   371 RFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVI 430
             RF YSLRVYLSILYLRIPE+F I LRGK VEHHN+A+DL +P++ILY+PQ+AG  E  V+
Sbjct:   350 RFSYSLRVYLSILYLRIPETFKIILRGKVVEHHNVADDLMHPQYILYKPQAAGSEEALVV 409

Query:   431 TTIGFLKDAPHISIHGFNVYHKNRLILPFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSK 490
             TTIGFLK+AP +++HGF VYHKNRLI+PFWQV++YS   SRGRGVVGVLEANF+EPTH+K
Sbjct:   410 TTIGFLKEAPKVNLHGFCVYHKNRLIMPFWQVINYS--SSRGRGVVGVLEANFVEPTHNK 467

Query:   491 QDFERTSLFQKLETRLKEMTWEYWDYHCELIGYQRKKKPQ---PS-ISPLASSYSMPRSG 546
             QDFE+T L QKLE RLKEMT EYW  HC LIGYQ  KKP+   P  + P       P  G
Sbjct:   468 QDFEKTVLLQKLENRLKEMTVEYWSCHCVLIGYQVNKKPRLQIPQKVQPAGRQALSPPPG 527

Query:   547 IHQPVVWDQSSTAT 560
                  V+ Q +T +
Sbjct:   528 FQ--AVFPQGNTTS 539

GO:0005634 "nucleus" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

GO:0016887 "ATPase activity" evidence=IDA

GO:0080188 "RNA-directed DNA methylation" evidence=IMP

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR\|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016039001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (654 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		706
pfam13589		134	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr	9e-19
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	3e-07
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	2e-06
smart00387		111	smart00387, HATPase_c, Histidine kinase-like ATPas	7e-04

>gnl\|CDD\|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

 Score = 82.7 bits (205), Expect = 9e-19
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 18/141 (12%)

Query: 146 FGAIAELLDNAIDEIQNGAAFVIVDKIS-NPRDGTPALLIQDDGGGMDPEAMRRCMSFGF 204
             AIAEL+DN+ID      A  +  KIS +P  G   + I+D+GGGM  E +R  +  G 
Sbjct: 4   EDAIAELIDNSID----ADATNV--KISIDPDRGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 205 SDKK---SKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTGHD 261
           S K+     + +G+ G G K +S+ LG  + V S+   + +       L    + + G  
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLT----LDLDDIDKEGEW 113

Query: 262 RIVVPMVD----YELNTSTGT 278
            +               S GT
Sbjct: 114 DLPELTSAEIEESLDKNSHGT 134

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|214643 smart00387, HATPase_c, Histidine kinase-like ATPases	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		706
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	100.0
KOG1845		775	consensus MORC family ATPases [Cell cycle control,	99.9
PRK05218		613	heat shock protein 90; Provisional	99.72
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	99.69
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.63
COG0326		623	HtpG Molecular chaperone, HSP90 family [Posttransl	99.61
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.6
PRK14083		601	HSP90 family protein; Provisional	99.58
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	99.53
PTZ00130		814	heat shock protein 90; Provisional	99.53
PTZ00272		701	heat shock protein 83 kDa (Hsp83); Provisional	99.47
KOG0019		656	consensus Molecular chaperone (HSP90 family) [Post	98.98
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	98.96
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.88
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	98.83
KOG0020		785	consensus Endoplasmic reticulum glucose-regulated	98.79
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	98.78
PRK04184		535	DNA topoisomerase VI subunit B; Validated	98.66
PRK05644		638	gyrB DNA gyrase subunit B; Validated	98.65
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	98.62
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	98.56
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	98.52
PRK14939		756	gyrB DNA gyrase subunit B; Provisional	98.47
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	98.44
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	98.41
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	98.31
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	98.22
smart00433		594	TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras	98.02
COG3290		537	CitA Signal transduction histidine kinase regulati	97.99
COG0187		635	GyrB Type IIA topoisomerase (DNA gyrase/topo II, t	97.98
TIGR01058		637	parE_Gpos DNA topoisomerase IV, B subunit, Gram-po	97.96
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	97.76
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	97.65
PRK10604		433	sensor protein RstB; Provisional	97.62
PRK09303		380	adaptive-response sensory kinase; Validated	97.59
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	97.51
PRK09470		461	cpxA two-component sensor protein; Provisional	97.5
PRK11086		542	sensory histidine kinase DcuS; Provisional	97.45
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	97.43
PRK10364		457	sensor protein ZraS; Provisional	97.41
PLN03237		1465	DNA topoisomerase 2; Provisional	97.39
PRK09467		435	envZ osmolarity sensor protein; Provisional	97.39
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	97.38
COG0642		336	BaeS Signal transduction histidine kinase [Signal	97.37
PRK10549		466	signal transduction histidine-protein kinase BaeS;	97.37
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	97.36
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	97.34
PRK10755		356	sensor protein BasS/PmrB; Provisional	97.29
PRK11100		475	sensory histidine kinase CreC; Provisional	97.25
PRK11360		607	sensory histidine kinase AtoS; Provisional	97.2
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	97.13
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	97.12
PRK13837		828	two-component VirA-like sensor kinase; Provisional	97.08
PRK10815		485	sensor protein PhoQ; Provisional	97.04
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	96.9
PRK15347		921	two component system sensor kinase SsrA; Provision	96.85
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	96.84
PRK11091		779	aerobic respiration control sensor protein ArcB; P	96.84
PRK10547		670	chemotaxis protein CheA; Provisional	96.83
PRK10490		895	sensor protein KdpD; Provisional	96.83
PRK10618		894	phosphotransfer intermediate protein in two-compon	96.82
COG4191		603	Signal transduction histidine kinase regulating C4	96.81
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	96.77
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	96.72
PRK09835		482	sensor kinase CusS; Provisional	96.68
PRK10337		449	sensor protein QseC; Provisional	96.65
PRK09959		1197	hybrid sensory histidine kinase in two-component r	96.57
PTZ00109		903	DNA gyrase subunit b; Provisional	96.55
PRK10841		924	hybrid sensory kinase in two-component regulatory	96.5
PTZ00108		1388	DNA topoisomerase 2-like protein; Provisional	96.45
PRK13557		540	histidine kinase; Provisional	96.42
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	96.32
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	96.13
PHA02569		602	39 DNA topoisomerase II large subunit; Provisional	96.04
COG4585		365	Signal transduction histidine kinase [Signal trans	95.89
PRK04069		161	serine-protein kinase RsbW; Provisional	95.81
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	95.64
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	95.63
PLN03128		1135	DNA topoisomerase 2; Provisional	95.61
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	95.41
PRK11644		495	sensory histidine kinase UhpB; Provisional	95.41
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	95.34
PRK03660		146	anti-sigma F factor; Provisional	95.27
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	95.13
PRK13560		807	hypothetical protein; Provisional	94.74
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	94.51
COG2972		456	Predicted signal transduction protein with a C-ter	93.23
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	92.37
COG4251		750	Bacteriophytochrome (light-regulated signal transd	92.33
COG5000		712	NtrY Signal transduction histidine kinase involved	91.61
KOG4005		292	consensus Transcription factor XBP-1 [Transcriptio	91.46
COG4192		673	Signal transduction histidine kinase regulating ph	91.44
COG3852		363	NtrB Signal transduction histidine kinase, nitroge	90.41
COG5002		459	VicK Signal transduction histidine kinase [Signal	89.65
COG3920		221	Signal transduction histidine kinase [Signal trans	86.94
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	86.43
COG3851		497	UhpB Signal transduction histidine kinase, glucose	85.46
PRK15422		79	septal ring assembly protein ZapB; Provisional	83.27
PRK13559		361	hypothetical protein; Provisional	82.39
TIGR02894		161	DNA_bind_RsfA transcription factor, RsfA family. I	80.86

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=2.4e-56  Score=509.89  Aligned_cols=487  Identities=42%  Similarity=0.577  Sum_probs=392.5

Q ss_pred             cccCCCCCceeeeeeecCCCcccccccccccCCCCcccccccCCCCCccchhhhccccccccCcccccccccCCCCCCCC
Q 005242            9 LCSDDEDGQVDEISIKLEPDSVGGTMQQKYYYKDDPAEHWKSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQSPVDDT   88 (706)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (706)
                      ||.+|....++.....--+.|       ..++...---.+.+++.+.+.+.+....+...++...-...-..-.++.++.
T Consensus         2 l~~~Ddg~Gms~d~a~~~~~f-------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~   74 (775)
T KOG1845|consen    2 LCFLDDGLGMSPDEAPKAINF-------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA   74 (775)
T ss_pred             cccccCCCCcCchhhhhhhhh-------cccccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence            677777655543332222222       3333333334566788888888888887777666543221112112334444


Q ss_pred             CCCcCCCCCC---------------CchhhhhhcccCCCcccCCcccccCC-ccccccCchhhhccccCCcCHHHHHHHH
Q 005242           89 GISSSSSICP---------------APLCRQFWKAGNYEDRLGSKATLQNG-KNFLHVHPMFLHSNATSHKWAFGAIAEL  152 (706)
Q Consensus        89 ~~~~~~~~~~---------------~~~~~~fw~ag~~~~~~~~~~~~~~~-~~~~~v~p~fL~Snstsh~~pfsAIaEL  152 (706)
                      ....-++.||               +..||||||||+|..+..+......| ..||++||+|||+|+|+|+|.++|++||
T Consensus        75 vvvP~~t~~~~~~~~~~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeL  154 (775)
T KOG1845|consen   75 VVVPCPTFNPRTREIVTEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAEL  154 (775)
T ss_pred             ceecccccccccccccccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhh
Confidence            4444444443               45799999999999998877777555 7999999999999999999999999999


Q ss_pred             HHhhhhHHhcCCceEEEEEEeCCCCC-cCeEEEE-----ECCCCCCHHHHHHhhhccccccCC-CCccCccccchhhHHh
Q 005242          153 LDNAIDEIQNGAAFVIVDKISNPRDG-TPALLIQ-----DDGGGMDPEAMRRCMSFGFSDKKS-KSVIGQYGNGFKTSSM  225 (706)
Q Consensus       153 VDNAiDA~~~gAt~V~I~i~~n~~~g-~~~L~I~-----DNG~GM~~eeL~~~m~fG~S~K~~-~~~IGrfG~GfKsAs~  225 (706)
                      +|||+|.+.++++++.|+.+....+. ...++|.     |||+||.++-+..||.+|++.|.. ...+|+||+|||++.|
T Consensus       155 ldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~  234 (775)
T KOG1845|consen  155 LDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTM  234 (775)
T ss_pred             ccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchh
Confidence            99999999999999988776544344 5666666     779999999999999999999865 7889999999999999


Q ss_pred             hcCCeEEEEEeec--CCcceeEEeeccchhhhcccCCCceeeee----eeeeecCCCCeeeeecCcchhhhhhhh-----
Q 005242          226 RLGADVIVFSRHL--NDRTLTQSIGLLSYTFLTRTGHDRIVVPM----VDYELNTSTGTVNALHGRDHFTLNLSL-----  294 (706)
Q Consensus       226 ~LG~~v~V~SK~~--~~~~~t~svglLS~tfl~~~g~d~viVP~----~~~e~~~~~Gt~v~~~~~~~~~~~l~~-----  294 (706)
                      ++|++++|++|..  .+...|+++|+||++||+.++.++++|||    .+++....-+..+...+..+|..|+.+     
T Consensus       235 rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~  314 (775)
T KOG1845|consen  235 RLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTER  314 (775)
T ss_pred             hhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHH
Confidence            9999999999942  23335899999999999999999999999    666654332222333456678888888     


Q ss_pred             hhccCCCCCHHHHHHH---------------hccccCCceEEEEEec--cccCCCceeecCCCCcccccccCCccccCCC
Q 005242          295 LLQWSPYSSETELLKQ---------------FDDIGHHGTKIIIYNL--WFSDGGNMELDFDSDPEDIRIAGDVINKFDP  357 (706)
Q Consensus       295 IlkySPf~se~eLl~q---------------f~~I~~hGT~III~nL--w~~~~G~~ELdF~td~~DI~I~g~~~~~~~~  357 (706)
                      +++|+||.++.+++.|               ++.+..+||.||+|++  |.+..|.+++||..+.++|.           
T Consensus       315 ~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~-----------  383 (775)
T KOG1845|consen  315 FLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIP-----------  383 (775)
T ss_pred             HhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhhhcccccceeeccccCccccc-----------
Confidence            9999999999999988               8888999999999999  99999999999999888873           


Q ss_pred             chhhhhhhhhhhhhhhHHHHHHHHHhhccCCCceEEEEcCeEecccccccccCcchhhhccCCCcccc-c---ceEEEEe
Q 005242          358 GAFRQLHEQHIANRFHYSLRVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCL-E---GTVITTI  433 (706)
Q Consensus       358 ~~~~~~~~~HIa~~~~~SLRaYlSILYL~~pp~fkIiLrGk~V~~~~i~~~L~~~e~~~YkP~~~~~v-~---~~V~~t~  433 (706)
                        |          .+.++++.|.+|||++.+++|++++.|+.+.|+.+....+..+..+|.|+....- .   .......
T Consensus       384 --~----------~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~  451 (775)
T KOG1845|consen  384 --W----------TYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKP  451 (775)
T ss_pred             --c----------cchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCC
Confidence              1          3567788999999999999999999999999999999999988889998874221 1   1224567


Q ss_pred             eeccCCC-ccccceEEEEEeCcccc----hhhhhhcccccCccceeEEEEEecCccCCCCCcchhcccHHHHHHHHHHHH
Q 005242          434 GFLKDAP-HISIHGFNVYHKNRLIL----PFWQVVSYSYRDSRGRGVVGVLEANFIEPTHSKQDFERTSLFQKLETRLKE  508 (706)
Q Consensus       434 Gflkea~-~~~~qGf~VY~nnRLI~----~~wrVg~q~~~~s~grGVIGVleanflePthnKQdFe~t~~y~~Le~~L~e  508 (706)
                      ||.+.++ +++.++|+|||.+|||.    |+|+.++.  .++.++++++++.+||.+++|++|||+++..-.+++.++.+
T Consensus       452 ~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~k~~n~--~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~  529 (775)
T KOG1845|consen  452 GFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFVKIDNA--TGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQ  529 (775)
T ss_pred             CcccccCCCCCccCCccccCCcchhhcccceeeecCC--CccccccccceecccccccCCCccccccccccccchhhhhh
Confidence            8888765 46788999999999999    99999997  67999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhCccccC
Q 005242          509 MTWEYWDYHCELIGYQRKK  527 (706)
Q Consensus       509 ~l~~YW~~~~~~~Gy~~~~  527 (706)
                      +++.||...|++++|....
T Consensus       530 ~~~~~~~~~~~~i~~~~~q  548 (775)
T KOG1845|consen  530 SLNTYEEKKCLRIDEAGRQ  548 (775)
T ss_pred             cccccccccccccCccchh
Confidence            9999999999999997554

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PTZ00130 heat shock protein 90; Provisional	Back alignment and domain information

>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional	Back alignment and domain information

>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK14939 gyrB DNA gyrase subunit B; Provisional	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

>smart00433 TOP2c TopoisomeraseII	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PLN03237 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PTZ00109 DNA gyrase subunit b; Provisional	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PTZ00108 DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PHA02569 39 DNA topoisomerase II large subunit; Provisional	Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>PLN03128 DNA topoisomerase 2; Provisional	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>KOG4005 consensus Transcription factor XBP-1 [Transcription]	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	Back alignment and domain information

>PRK15422 septal ring assembly protein ZapB; Provisional	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		706
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2zbk_B		530	Type 2 DNA topoisomerase 6 subunit B; DNA binding	4e-04
2q2e_B		621	Type 2 DNA topoisomerase 6 subunit B; DNA-binding,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 74/557 (13%), Positives = 144/557 (25%), Gaps = 200/557 (35%)

Query: 2   SNRDIV---------DL-CSDDED--------GQVDEISIKLEPDSVGGTM--------Q 35
             +DI+         +  C D +D         ++D I +    D+V GT+        +
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFWTLLSK 74

Query: 36  QKYYYK------DDPAEHW---KSKSQPRKQDSEEKKSSNALSTGQSSNSVLEQGQ---- 82
           Q+   +            +     K++ R+     +          + N V  +      
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 83  SPV-----------DDTGIS------SSSSICPAPLCRQ-----------FW-KAGNYED 113
            P                +       S  +     +C             FW    N   
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 114 RLGSKATLQNGKNFLH-VHPMF--LHSNATSHKWAFGAIAELLDNAIDEIQNGAAFVIVD 170
               +  L+  +  L+ + P +     ++++ K    +I   L   +         +++ 
Sbjct: 195 ---PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 171 KISNPRD------GTPALLIQDDGGGMDP-EAMRRC------MSFGFSDKKSKSVIGQY- 216
            + N +           LL        D   A           S   +  + KS++ +Y 
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 217 -------------GNGFKTS----SMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRTG 259
                         N  + S    S+R G       +H+N   LT  I   S   L    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE--- 367

Query: 260 HDRIVVPMVDYELNTSTGTVNALHGRDHFTLNLSLLLQWSPYSSETELLKQFDDIGHHGT 319
                      E             R  F   LS+                F        
Sbjct: 368 ---------PAEY------------RKMFD-RLSV----------------FPP----SA 385

Query: 320 KI---IIYNLWFSDGGNMELDFDSDPEDIRIAGDVINKFDPGAFRQLHEQHIANRFHYSL 376
            I   ++  +WF          D    D+     V+NK        LH+  +  +     
Sbjct: 386 HIPTILLSLIWF----------DVIKSDVM---VVVNK--------LHKYSLVEKQPKES 424

Query: 377 RVYLSILYLRIPESFSIKLRGKAVEHHNIANDLKYPEFILYRPQSAGCLEGTVITTIGFL 436
            + +  +YL       +KL  +   H +I +         Y        +  +       
Sbjct: 425 TISIPSIYLE----LKVKLENEYALHRSIVDH--------YNIPKTFDSDDLIP------ 466

Query: 437 KDAPHIS--IHGFNVYH 451
              P++    +    +H
Sbjct: 467 ---PYLDQYFYSHIGHH 480

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530	Back alignment and structure

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		706
1y4s_A		559	Chaperone protein HTPG; HSP90, molecular chaperone	99.7
1b63_A		333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	99.69
2ioq_A		624	Chaperone protein HTPG; heat shock protein, HSP90;	99.67
2o1u_A		666	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	99.65
3h4l_A		367	DNA mismatch repair protein PMS1; ATP binding, DNA	99.62
3na3_A		348	DNA mismatch repair protein MLH1; MUTL protein hom	99.59
3nmq_A		239	Heat shock protein HSP 90-beta; ATPase, chaperone-	99.56
1h7s_A		365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	99.56
3peh_A		281	Endoplasmin homolog; structural genomics, structur	99.54
3t0h_A		228	Heat shock protein HSP 90-alpha; chaperone, ATPase	99.53
2cg9_A		677	ATP-dependent molecular chaperone HSP82; chaperone	99.52
3o0i_A		256	HSP90AA1 protein; HSP90 heat-shock proteins, chape	99.51
2wer_A		220	ATP-dependent molecular chaperone HSP82; ATPase, A	99.46
1yc1_A		264	HSP 86, heat shock protein HSP 90-alpha; cell-cycl	99.46
2ior_A		235	Chaperone protein HTPG; heat shock protein, HSP90;	99.46
3ied_A		272	Heat shock protein; HSP90, chaperone, structural g	99.46
2gqp_A		236	Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone,	99.44
1qy5_A		269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	99.42
1ei1_A		391	DNA gyrase B, GYRB; ATPase domain, dimer, isomeras	99.11
1s16_A		390	Topoisomerase IV subunit B; two-domain protein com	99.08
4duh_A		220	DNA gyrase subunit B; structure-based drug design,	98.97
4emv_A		226	DNA topoisomerase IV, B subunit; protein-inhibitor	98.91
3fv5_A		201	DNA topoisomerase 4 subunit B; topoisomerase IV B	98.87
3cwv_A		369	DNA gyrase, B subunit, truncated; structural genom	98.84
1kij_A		390	DNA gyrase subunit B; topoisomerase, gyrase B-coum	98.84
3lnu_A		408	Topoisomerase IV subunit B; PARE, ATP-binding, nuc	98.7
1zxm_A		400	TOPO IIA ATPase, DNA topoisomerase II, alpha isozy	98.67
3ttz_A		198	DNA gyrase subunit B; protein-inhibitor complex, A	98.36
1mu5_A		471	Type II DNA topoisomerase VI subunit B; GHKL ATPas	98.27
2zbk_B		530	Type 2 DNA topoisomerase 6 subunit B; DNA binding	98.17
1id0_A		152	PHOQ histidine kinase; PHOQ/PHOP, signal transduct	98.05
1i58_A		189	Chemotaxis protein CHEA; beta-alpha sandwich, sign	98.0
2q8g_A		407	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	98.0
2btz_A		394	Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo	97.99
2c2a_A		258	Sensor histidine kinase; phosphotransfer, PHOQ, se	97.94
2e0a_A		394	Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP	97.93
2q2e_B		621	Type 2 DNA topoisomerase 6 subunit B; DNA-binding,	97.93
1ysr_A		150	Sensor-type histidine kinase PRRB; ATP-binding dom	97.88
1bxd_A		161	ENVZ(290-450), protein (osmolarity sensor protein	97.87
3sl2_A		177	Sensor histidine kinase YYCG; ATP binding, intact	97.85
1gkz_A		388	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]	97.85
4ew8_A		268	Sensor protein DIVL; signal transduction, two-comp	97.82
1y8o_A		419	[pyruvate dehydrogenase [lipoamide]] kinase isozy;	97.8
1pvg_A		418	DNA topoisomerase II; GHKL ATPase domain; HET: DNA	97.76
3a0y_A		152	Sensor protein; ATP-LID, kinase, phosphoprotein, t	97.75
1b3q_A		379	Protein (chemotaxis protein CHEA); histine kinase,	97.73
1r62_A		160	Nitrogen regulation protein NR(II); PII, histidine	97.73
1th8_A		145	Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s	97.69
3d36_A		244	Sporulation kinase B; GHKL ATPase, four helix bund	97.66
3jz3_A		222	Sensor protein QSEC; helix-turn-helix, kinase doma	97.65
3ehg_A		128	Sensor kinase (YOCF protein); GHL ATPase domain, t	97.42
3zxo_A		129	Redox sensor histidine kinase response regulator;	97.35
3ehh_A		218	Sensor kinase (YOCF protein); four-helix bundle, G	97.27
3zxq_A		124	Hypoxia sensor histidine kinase response regulato;	97.17
3a0r_A		349	Sensor protein; four helix bundle, PAS fold, kinas	97.02
4gfh_A		1177	DNA topoisomerase 2; topoisomerase, protein-DNA co	96.28
4fpp_A		247	Phosphotransferase; four helix bundle, bergerat fo	96.06
3ke6_A		399	Protein RV1364C/MT1410; anti-sigma factor, anti-si	91.19
1ixm_A		192	SPO0B, protein (sporulation response regulatory pr	90.02
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.4
3swy_A		46	Cyclic nucleotide-gated cation channel alpha-3; co	86.54
3cvf_A		79	Homer-3, homer protein homolog 3; coiled coil, alt	82.37

>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A	Back alignment and structure

Probab=99.70  E-value=3.8e-16  Score=176.44  Aligned_cols=95  Identities=25%  Similarity=0.321  Sum_probs=74.0

Q ss_pred             CcCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hcccccc
Q 005242          142 HKWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDK  207 (706)
Q Consensus       142 h~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K  207 (706)
                      ..++..+|+|||+||+||..+             .+..+.|++..+.  +...|.|.|||+||+.++|..+| ++|+|.+
T Consensus        25 Ysn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~  102 (559)
T 1y4s_A           25 YSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGT  102 (559)
T ss_dssp             GGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHSCCSCCCC
T ss_pred             CCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHhhhccccc
Confidence            345778999999999999731             1333444444432  34799999999999999999887 8998874


Q ss_pred             C------------CCCccCccccchhhHHhhcCCeEEEEEeecC
Q 005242          208 K------------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLN  239 (706)
Q Consensus       208 ~------------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~  239 (706)
                      +            +...||+||+||+++ |.+|++|+|.||+.+
T Consensus       103 ~~f~e~l~~~~~~~~~~iG~fGvGfyS~-f~VadkV~V~Sr~~~  145 (559)
T 1y4s_A          103 KSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAG  145 (559)
T ss_dssp             CCTTCC--------CCCCSSCCCSGGGH-HHHEEEEEEEEECSS
T ss_pred             HHHHHHhhccccccccccCCCCcchhhh-hhccCeEEEEEcCCC
Confidence            2            346889999999875 569999999999876

PyMOL of 1y4s

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*	Back alignment and structure

>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A	Back alignment and structure

>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A	Back alignment and structure

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}	Back alignment and structure

>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1	Back alignment and structure

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*	Back alignment and structure

>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*	Back alignment and structure

>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...	Back alignment and structure

>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}	Back alignment and structure

>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*	Back alignment and structure

>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A	Back alignment and structure

>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*	Back alignment and structure

>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}	Back alignment and structure

>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}	Back alignment and structure

>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*	Back alignment and structure

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*	Back alignment and structure

>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*	Back alignment and structure

>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*	Back alignment and structure

>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*	Back alignment and structure

>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}	Back alignment and structure

>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2	Back alignment and structure

>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*	Back alignment and structure

>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*	Back alignment and structure

>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*	Back alignment and structure

>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*	Back alignment and structure

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}	Back alignment and structure

>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A	Back alignment and structure

>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*	Back alignment and structure

>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A	Back alignment and structure

>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*	Back alignment and structure

>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*	Back alignment and structure

>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*	Back alignment and structure

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}	Back alignment and structure

>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A	Back alignment and structure

>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3	Back alignment and structure

>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}	Back alignment and structure

>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*	Back alignment and structure

>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}	Back alignment and structure

>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*	Back alignment and structure

>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*	Back alignment and structure

>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A	Back alignment and structure

>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A	Back alignment and structure

>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3	Back alignment and structure

>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*	Back alignment and structure

>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}	Back alignment and structure

>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}	Back alignment and structure

>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}	Back alignment and structure

>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*	Back alignment and structure

>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}	Back alignment and structure

>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}	Back alignment and structure

>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A	Back alignment and structure

>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}	Back alignment and structure

>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}	Back alignment and structure

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		706
d2hkja3		219	d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A	0.003

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase VI-B subunit
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 9/131 (6%)

Query: 148 AIAELLDNAIDEI-QNGAAFVIVDKISNPRDGTPALLI--QDDGGGMDPEAMRRCMSFGF 204
            + EL++N++D    +G    I   I    D      +   D+G G+ P+ +        
Sbjct: 26  TVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVL 85

Query: 205 SDKKSKSVIGQYGNG------FKTSSMRLGADVIVFSRHLNDRTLTQSIGLLSYTFLTRT 258
              K  +   +   G         S M     + + +  +N + +      +        
Sbjct: 86  YSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPI 145

Query: 259 GHDRIVVPMVD 269
             +R  V    
Sbjct: 146 IVERGSVENTR 156

PyMOL of d2hkja3

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		706
d2iwxa1		213	HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T	99.58
d1uyla_		208	HSP90 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1b63a2		218	DNA mismatch repair protein MutL {Escherichia coli	99.53
d1h7sa2		203	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.49
d2gqpa1		227	HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	99.47
d2hkja3		219	Topoisomerase VI-B subunit {Archaeon Sulfolobus sh	99.22
d1ei1a2		219	DNA gyrase B {Escherichia coli [TaxId: 562]}	98.4
d2c2aa2		161	Sensor histidine kinase TM0853 {Thermotoga maritim	98.36
d1bxda_		161	Histidine kinase domain of the osmosensor EnvZ {Es	98.29
d1gkza2		193	Branched-chain alpha-ketoacid dehydrogenase kinase	98.18
d1id0a_		146	Histidine kinase PhoQ domain {Escherichia coli [Ta	98.17
d1ysra1		148	Sensor-type histidine kinase PrrB {Mycobacterium t	98.15
d1jm6a2		190	Pyruvate dehydrogenase kinase {Rat (Rattus norvegi	98.04
d1r62a_		156	Nitrogen regulation protein NtrB, C-terminal domai	97.75
d1kija2		212	DNA gyrase B {Thermus thermophilus [TaxId: 274]}	97.69
d1pvga2		239	DNA topoisomerase II {Baker's yeast (Saccharomyces	97.47
d1ixma_		179	Sporulation response regulatory protein Spo0B {Bac	97.36
d1y8oa2		125	Pyruvate dehydrogenase kinase {Human (Homo sapiens	97.36
d1s14a_		168	Topoisomerase IV subunit B {Escherichia coli [TaxI	97.2
d1th8a_		139	Anti-sigma factor spoIIab {Bacillus stearothermoph	96.9

>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.1e-15  Score=151.49  Aligned_cols=96  Identities=25%  Similarity=0.307  Sum_probs=75.2

Q ss_pred             cCHHHHHHHHHHhhhhHHhc-------------CCceEEEEEEeCCCCCcCeEEEEECCCCCCHHHHHHhh-hccccccC
Q 005242          143 KWAFGAIAELLDNAIDEIQN-------------GAAFVIVDKISNPRDGTPALLIQDDGGGMDPEAMRRCM-SFGFSDKK  208 (706)
Q Consensus       143 ~~pfsAIaELVDNAiDA~~~-------------gAt~V~I~i~~n~~~g~~~L~I~DNG~GM~~eeL~~~m-~fG~S~K~  208 (706)
                      .++.-+|+|||.||.||+.+             ....+.|.+..+  .....|.|.|||.||+.+++.+.| ++|.|.++
T Consensus        24 s~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d--~~~~~l~i~DnGiGMt~~~~~~~l~~ia~S~~~  101 (213)
T d2iwxa1          24 SNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--PEQKVLEIRDSGIGMTKAELINNLGTIAKSGTK  101 (213)
T ss_dssp             SCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEE--GGGTEEEEEECSSCCCHHHHHHHHTTCCCSTHH
T ss_pred             CCchHHHHHHHHhHHHHHHHHHHhhccCcccccCCcccccccccc--cccceeEEecCCccccHHHHHHHHhhhhcccch
Confidence            45667899999999999853             112334444443  357899999999999999999887 89998652


Q ss_pred             ----------CCCccCccccchhhHHhhcCCeEEEEEeecCCc
Q 005242          209 ----------SKSVIGQYGNGFKTSSMRLGADVIVFSRHLNDR  241 (706)
Q Consensus       209 ----------~~~~IGrfG~GfKsAs~~LG~~v~V~SK~~~~~  241 (706)
                                ....|||||+||.++. .++.+|.|.||+.+..
T Consensus       102 ~~~~~~~~~~~~~~IGqFGIGfyS~F-mvad~v~V~trs~~~~  143 (213)
T d2iwxa1         102 AFMEALSAGADVSMIGQFGVGFYSLF-LVADRVQVISKSNDDE  143 (213)
T ss_dssp             HHHHHHHHTCCGGGGGGGTCGGGGGG-GTEEEEEEEEECTTSC
T ss_pred             HHHhhhhhhhhhhhhcccccchhhhh-hhccceeEEeecCCcc
Confidence                      2367999999998775 5999999999987654

PyMOL of d2iwxa1

>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}	Back information, alignment and structure

>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}	Back information, alignment and structure

>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}	Back information, alignment and structure

>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure