Citrus Sinensis ID: 005245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700------
Protein Sequence
MATSIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccHHHcHHHHHHHHHHHEEEEccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHccccccccHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccEEEccEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHcccccccEEEEEcccccEEcccHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccEEcccccccccccEEccccccccHHcEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccEEEHHHHcccEEEEEEccccccHHHHHHHHHHHHcHHHccccccccEEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHccccccEEEEEcccccEEcHcHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHccccHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccEEEEEccccEEEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEEEccccccccccEEccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
matsivpyrmqpvgrerhmfatsddNAMLRQVQathapdgrefnvkPLLYIIEDIFqraapsfpgfiqETQAQLDvlddkafqsGFFDMLDLLSSTINRISceisckcsgggdahatTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVaqlfpvnplAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEvkelpsdyitpdtpemaAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIhtkddqlplvecptkrkvsidVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRqlssrtesqyevvwlpivdrstpwteakEHKFEALQYMmpwfsvhhpsaidpAVIRYAKEkwdfrkkpilvvldpqgrvvnQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDlladsvdpviptWIMEQKHIclyggedlEWVRKFTALMGAVARAAGIALEMLyvgksnpkeKARRIISTISVEklshtlpdptlIWFFWVRLESMWHSKmkfgtkvqqdpiMQEIVTMLSfdgsdqgwavisrgphmakakdETILKCLTEyttwepnvpekSFVVAMNDylnenrtpyhcnrlilpgeagripekVVCAECGRRMEEFIMYRCCTD
Flexible Loop (DISEMBL)
matsivpyrmqpvgreRHMFATSDDNAMLRQVQAthapdgrefnVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHtkddqlplvecptkrkvsidvlrrkSVLLLVSDLDVSNEELFLLEQMYRESrqlssrtesqyevvwlpivdrstpWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLyvgksnpkeKARRIISTIsveklshtlpdpTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTtwepnvpekSFVVAMNDYLNENRTPYHCNRLilpgeagripeKVVCAECGRRMEEfimyrcctd
Low Complexity Region (SEG)
MATSIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVlalaafalNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNhllqqlklchqlIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIdvlrrksvlllvsdldvsNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Disordered region (IsUnstruct)
****************************************REFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYR***********QYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSN***KARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCC**
Disordered Region (DISOPRED)
**************************AMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFP****************AFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQL*S**ESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHS************IMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Disordered Region (DISEMBL)
MATSIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYR**********SQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Disordered Region (DISPRO)
********************ATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	706
255547988	701	conserved hypothetical protein [Ricinus	0.984	0.991	0.669	0.0
225424590	714	PREDICTED: uncharacterized protein LOC10	0.995	0.984	0.647	0.0
147858235	714	hypothetical protein VITISV_026532 [Viti	0.995	0.984	0.647	0.0
255572046	805	conserved hypothetical protein [Ricinus	0.984	0.863	0.578	0.0
255572048	809	conserved hypothetical protein [Ricinus	0.984	0.859	0.577	0.0
255572050	792	conserved hypothetical protein [Ricinus	0.984	0.877	0.57	0.0
393191329	786	sieve element occlusion protein 2 [Nicot	0.990	0.889	0.562	0.0
359806314	703	uncharacterized protein LOC100799626 [Gl	0.991	0.995	0.551	0.0
297733661	708	unnamed protein product [Vitis vinifera]	0.974	0.971	0.569	0.0
359488786	780	PREDICTED: uncharacterized protein LOC10	0.988	0.894	0.566	0.0

>gi|255547988|ref|XP_002515051.1| conserved hypothetical protein [Ricinus communis] gi|223546102|gb|EEF47605.1| conserved hypothetical protein [Ricinus communis]

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/708 (66%), Positives = 571/708 (80%), Gaps = 13/708 (1%)

Query: 4   SIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSF 63
           ++VP+R  P G ERHMF+TSDDNAM++Q+QATHAPDGREF+V+PLL ++ED+FQRA P  
Sbjct: 2   AVVPHRSNPRG-ERHMFSTSDDNAMMKQIQATHAPDGREFDVRPLLNVVEDVFQRAVPP- 59

Query: 64  PGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFN 123
            G     Q Q     +K  Q+GF++MLDLLS TIN+ISCEI+CKCSGGGDAHATTL IFN
Sbjct: 60  SGLATIVQPQ-----EKTLQNGFYEMLDLLSYTINKISCEIACKCSGGGDAHATTLAIFN 114

Query: 124 IVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPR 183
           +V+SYSWDAK+VLALAAFA+NYGEFW+VA L+  NPLAK+VALLKQLP+ILERAD +KP+
Sbjct: 115 LVSSYSWDAKLVLALAAFAVNYGEFWLVAHLYLTNPLAKAVALLKQLPDILERADALKPK 174

Query: 184 FETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQ 243
           FE +S+LI A LD+ KCIVE KELP  YITPD PEM   TAHIPTAVYW IRSIVACA Q
Sbjct: 175 FEAVSSLIRAALDVAKCIVEFKELPPQYITPDAPEMLIATAHIPTAVYWTIRSIVACATQ 234

Query: 244 ILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVR 303
           I+GLIGMGHEY+ STTE WELSSLAHK+ SI+ HL++QL LC+  I+EKR +E+YQ L+R
Sbjct: 235 IIGLIGMGHEYMASTTEAWELSSLAHKVRSIHEHLMRQLTLCYHHIDEKRHVEAYQTLIR 294

Query: 304 LMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL 363
           L +TIHIDN+K+L R LI+ KDDQLPL +   K++ S+DVLRRK+VLL +SDLD+ +EEL
Sbjct: 295 LFDTIHIDNIKIL-RALIYAKDDQLPLYDGHNKKRASLDVLRRKNVLLYISDLDLPHEEL 353

Query: 364 FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423
            +LEQMY E+RQ  +RTES YEVVWLP+V+RST W +AK+ +FE LQ +MPW++V+HPS 
Sbjct: 354 SMLEQMYSEARQNPARTESHYEVVWLPVVERSTAWNDAKQKQFENLQSVMPWYTVYHPSL 413

Query: 424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE 483
           +DPAVIRY KE W F KKP+LVVLDPQG+VVN NA+HMMWIWGS AFPF+  REEALW+ 
Sbjct: 414 LDPAVIRYIKEFWKFNKKPLLVVLDPQGKVVNPNAIHMMWIWGSAAFPFTSVREEALWRA 473

Query: 484 ETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYV 543
           E W+IDLLAD++DP+I +WI + K+ICLYGGED+EW+RKFT    A+A+AAGI LEMLYV
Sbjct: 474 ENWKIDLLADTIDPIIHSWIQQGKYICLYGGEDIEWIRKFTMTANALAQAAGIDLEMLYV 533

Query: 544 GKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQE 603
           GKSNP+EK R+    I  EKLSH L D TLIWFFWVRLESMWHSK++    V+ D IMQE
Sbjct: 534 GKSNPREKVRKNNIIIQNEKLSHVLQDLTLIWFFWVRLESMWHSKVQHNRTVENDIIMQE 593

Query: 604 IVTMLSFDGSDQGWAVISRGP-----HMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMN 658
           IVTMLSFDGSDQGWAVIS+G       +AKAK   IL C  +Y +W     E+ FV A+ 
Sbjct: 594 IVTMLSFDGSDQGWAVISKGSGAENRQLAKAKGSDILNCFDDYQSWREIAEEEGFVPAIL 653

Query: 659 DYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
           DYL+ +  P HCNRLILPG  G IPEKVVCAEC R ME+FIMYRCCTD
Sbjct: 654 DYLHGHHNPLHCNRLILPGTTGSIPEKVVCAECSRPMEKFIMYRCCTD 701

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424590|ref|XP_002282172.1| PREDICTED: uncharacterized protein LOC100261038 [Vitis vinifera] gi|296081390|emb|CBI16823.3| unnamed protein product [Vitis vinifera]

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/717 (64%), Positives = 567/717 (79%), Gaps = 14/717 (1%)

Query: 1   MATSIVPYRMQPVGRER---HMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQ 57
           MAT+ +P ++Q V R+R    MFA SDDN +++Q+ A H PDGR+F+VKPLL I+E+I  
Sbjct: 1   MATTFIPDKVQRV-RQRSGDRMFA-SDDNGIMKQIHAIHVPDGRDFDVKPLLRIVENILL 58

Query: 58  RAA------PSFPGF-IQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSG 110
           R        P+ PG  +   QAQLD L+DK  Q G  +M+DLL+ TIN+ISCEISCKC+ 
Sbjct: 59  RTTSSTTLTPALPGIPLGSNQAQLDALEDKTLQDGSSNMIDLLAHTINKISCEISCKCTS 118

Query: 111 GGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQL 170
           GGDAHAT + +FNI++SYSWDAKVVLALAAFA  YGEFW+VA L+P NPLAKSVA+LKQL
Sbjct: 119 GGDAHATAVAVFNILSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQL 178

Query: 171 PEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAV 230
           P+ILE  D +KP+FE LS+LI  M+D+ KCIV+ KELP  YITPDTP M    AHIPTAV
Sbjct: 179 PDILEHTDALKPKFEALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAV 238

Query: 231 YWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIE 290
           YW IRSIVACA QI  LIGM HEYI ST + WELS LAHK++++Y HL  QL LC Q I 
Sbjct: 239 YWTIRSIVACASQIASLIGMSHEYIASTMDAWELSGLAHKVSNMYGHLQSQLYLCQQHIN 298

Query: 291 EKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVL 350
           +K+ IE+Y  LVRL ET HIDNMK++ R+LI+ KDDQ PL +  +KRKVS+D+LRRK+VL
Sbjct: 299 DKKHIEAYMMLVRLFETPHIDNMKII-RVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVL 357

Query: 351 LLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410
           L +S+L+V +EELF+L+QMY+ESRQ  +R ESQYEVVW+P+VDRSTPWTE K  +FE L+
Sbjct: 358 LFISELEVPHEELFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLK 417

Query: 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF 470
            MMPW+SV HPS+ID AVI+Y KE W F KKP+LVVLDPQGRVVN NA+HMMWIWGS+AF
Sbjct: 418 SMMPWYSVDHPSSIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAF 477

Query: 471 PFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAV 530
           PF+  REE LWK ETWR++LLAD++DP+I  WI E  +ICL+GGED+EW+RKF  L  A+
Sbjct: 478 PFTSLREEGLWKGETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAI 537

Query: 531 ARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMK 590
           ARAAGI LEMLYVGKSNP+EK ++I + IS + LSHTLPD  L+WFFWVRLESMW+SKM+
Sbjct: 538 ARAAGIRLEMLYVGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQ 597

Query: 591 FGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVP 649
            G  V+ DPIMQEIV+MLSFDGSDQGW V S+G   M KAK E I++CL++Y  W+ NV 
Sbjct: 598 HGKTVESDPIMQEIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVS 657

Query: 650 EKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            K F+ A+NDYL E  TP+HCNRLILPG  G IPE+VVCAECGR ME+F+MYRCCTD
Sbjct: 658 SKGFLGALNDYLREIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCCTD 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858235|emb|CAN83922.1| hypothetical protein VITISV_026532 [Vitis vinifera]

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/717 (64%), Positives = 567/717 (79%), Gaps = 14/717 (1%)

Query: 1   MATSIVPYRMQPVGRER---HMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQ 57
           MAT+ +P ++Q V R+R    MFA SDDN +++Q+ A H PDGR+F+VKPLL I+E+I  
Sbjct: 1   MATTFIPDKVQRV-RQRSGDRMFA-SDDNGIMKQIHAIHVPDGRDFDVKPLLRIVENILL 58

Query: 58  RAA------PSFPGF-IQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSG 110
           R        P+ PG  +   QAQLD L+DK  Q G  +M+DLL+ TIN+ISCEISCKC+ 
Sbjct: 59  RTTSSTTLTPALPGIPLGSNQAQLDALEDKTLQDGSSNMIDLLAHTINKISCEISCKCTS 118

Query: 111 GGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQL 170
           GGDAHAT + +FNI++SYSWDAKVVLALAAFA  YGEFW+VA L+P NPLAKSVA+LKQL
Sbjct: 119 GGDAHATAVAVFNILSSYSWDAKVVLALAAFATTYGEFWLVAHLYPTNPLAKSVAILKQL 178

Query: 171 PEILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAV 230
           P+ILE  D +KP+FE LS+LI  M+D+ KCIV+ KELP  YITPDTP M    AHIPTAV
Sbjct: 179 PDILEHTDALKPKFEALSSLIKVMVDVAKCIVQFKELPPQYITPDTPAMVTAIAHIPTAV 238

Query: 231 YWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIE 290
           YW IRSIVACA QI  LIGM HEYI ST + WELS LAHK++++Y HL  QL LC Q I 
Sbjct: 239 YWTIRSIVACASQIASLIGMSHEYIASTMDAWELSGLAHKVSNMYGHLQXQLYLCQQHIN 298

Query: 291 EKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVL 350
           +K+ IE+Y  LVRL ET HIDNMK++ R+LI+ KDDQ PL +  +KRKVS+D+LRRK+VL
Sbjct: 299 DKKHIEAYMMLVRLFETPHIDNMKII-RVLIYAKDDQPPLFDGLSKRKVSLDILRRKNVL 357

Query: 351 LLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410
           L +S+L+V +EELF+L+QMY+ESRQ  +R ESQYEVVW+P+VDRSTPWTE K  +FE L+
Sbjct: 358 LFISELEVPHEELFILDQMYQESRQDPTRPESQYEVVWMPMVDRSTPWTEEKNRQFETLK 417

Query: 411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF 470
            MMPW+SV HPS+ID AVI+Y KE W F KKP+LVVLDPQGRVVN NA+HMMWIWGS+AF
Sbjct: 418 SMMPWYSVDHPSSIDLAVIKYIKEMWGFNKKPLLVVLDPQGRVVNNNAIHMMWIWGSLAF 477

Query: 471 PFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAV 530
           PF+  REE LWK ETWR++LLAD++DP+I  WI E  +ICL+GGED+EW+RKF  L  A+
Sbjct: 478 PFTSLREEGLWKGETWRMELLADTIDPIIHNWISEGSYICLFGGEDMEWIRKFCILAKAI 537

Query: 531 ARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMK 590
           ARAAGI LEMLYVGKSNP+EK ++I + IS + LSHTLPD  L+WFFWVRLESMW+SKM+
Sbjct: 538 ARAAGIRLEMLYVGKSNPREKIQKINAIISTDNLSHTLPDLHLVWFFWVRLESMWYSKMQ 597

Query: 591 FGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVP 649
            G  V+ DPIMQEIV+MLSFDGSDQGW V S+G   M KAK E I++CL++Y  W+ NV 
Sbjct: 598 HGKTVESDPIMQEIVSMLSFDGSDQGWVVFSKGSGEMTKAKGENIVRCLSDYDVWKNNVS 657

Query: 650 EKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            K F+ A+NDYL E  TP+HCNRLILPG  G IPE+VVCAECGR ME+F+MYRCCTD
Sbjct: 658 SKGFLGALNDYLREIHTPHHCNRLILPGTTGSIPERVVCAECGRPMEKFVMYRCCTD 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572046|ref|XP_002526964.1| conserved hypothetical protein [Ricinus communis] gi|223533716|gb|EEF35451.1| conserved hypothetical protein [Ricinus communis]

 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/700 (57%), Positives = 536/700 (76%), Gaps = 5/700 (0%)

Query: 11  QPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQET 70
           Q +  +R +F++SDDNAM +Q+QATH+PDGREF+VKPLL I+EDIF RAAP+        
Sbjct: 107 QLIKADRLLFSSSDDNAMTKQIQATHSPDGREFDVKPLLNIVEDIFDRAAPAIESLALPA 166

Query: 71  QAQL---DVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTS 127
            A     + LDD  + S    ML+ LS  I+R++ EI+ KCS GG+AHA T+ I N ++S
Sbjct: 167 AAHHARNEALDDNTYHSSVMAMLESLSFVIDRVASEITYKCSSGGEAHAITMSILNTLSS 226

Query: 128 YSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETL 187
           Y+WDAK+V+ALAAFA+ YGEFW+VAQ +  N LAKS+A+LK +P+ILE +  +KPRF+++
Sbjct: 227 YTWDAKLVIALAAFAMTYGEFWLVAQNYTSNQLAKSMAILKHMPDILEHSSMLKPRFDSV 286

Query: 188 SNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGL 247
            NLIT ML + KCIVE +ELP  YIT D P ++A  AH+P +VYW IRSIVACA Q++GL
Sbjct: 287 KNLITVMLAIAKCIVEFQELPPQYITMDVPALSAAMAHLPISVYWTIRSIVACASQVIGL 346

Query: 248 IGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMET 307
           IG+GHE++ STTE WELSSLAHK++++ +HL  QL LC++ I+E++ +E YQ L+RL E 
Sbjct: 347 IGLGHEHVASTTEAWELSSLAHKLSNMQSHLQNQLGLCYKHIDERKHMEIYQNLIRLFEM 406

Query: 308 IHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLE 367
            HIDNM+VL + LI++KDD  PL+E  TKR+V+IDVLRRK+VLLL+SDLD++ +E+ +LE
Sbjct: 407 AHIDNMRVL-KALIYSKDDIQPLLEGTTKRRVNIDVLRRKNVLLLISDLDITQDEISILE 465

Query: 368 QMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA 427
           Q+Y ESR   SR ESQYE+VWLPI+D++ P+ +    KFEALQ +M W+S+HHPS ID A
Sbjct: 466 QIYNESRLHPSRQESQYEIVWLPILDQAVPFNDNMLKKFEALQSVMTWYSIHHPSLIDRA 525

Query: 428 VIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWR 487
           VI++ KEKW+F KKPILVVLDPQGRV   NA+HMMWIWGS+AFPF+  REEALWKEE+WR
Sbjct: 526 VIKFVKEKWNFGKKPILVVLDPQGRVACPNAVHMMWIWGSLAFPFTTIREEALWKEESWR 585

Query: 488 IDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSN 547
           ++LL D +DP+I  WI E ++ICLYGGED+EW+RKFT+   AVA+AAGI L M+YVGKSN
Sbjct: 586 LELLVDGIDPIITNWIEEGRYICLYGGEDMEWIRKFTSTARAVAQAAGIPLGMVYVGKSN 645

Query: 548 PKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTM 607
           PKE+ RR I+TI VEKLSH   D T IW+FWVR+ESMW SK + G   + D +M+EI+ M
Sbjct: 646 PKERVRRNIATIMVEKLSHYWQDLTSIWYFWVRIESMWRSKNQLGKTSENDSLMKEIMAM 705

Query: 608 LSFDGSDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRT 666
           LSFD S+ GWA+ + G   + KAK    L CL+EYT+W+  + +K F+ ++ DYL    T
Sbjct: 706 LSFDSSEGGWAIFTGGTDEIVKAKGSIFLTCLSEYTSWKDQIQQKGFLPSLKDYLKGLHT 765

Query: 667 PYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            +HCNRLILPG AG IPE++VC++C R ME +IMY+CC +
Sbjct: 766 DHHCNRLILPGSAGTIPERIVCSDCSRNMERYIMYKCCDE 805

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572048|ref|XP_002526965.1| conserved hypothetical protein [Ricinus communis] gi|223533717|gb|EEF35452.1| conserved hypothetical protein [Ricinus communis]

 Score =  867 bits (2239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/701 (57%), Positives = 535/701 (76%), Gaps = 6/701 (0%)

Query: 11  QPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQET 70
           Q +  +R +F++SD+NAM +Q+QATH+PDGREF+VKPLL I+EDIF+RAAP+        
Sbjct: 110 QLIKGDRLLFSSSDENAMTKQIQATHSPDGREFDVKPLLNIVEDIFERAAPTIESLALPA 169

Query: 71  ---QAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTS 127
              QA+ +VLDDK + S    ML+ LS  I +I+ EIS KCSGGGDAHATT+ I N+++S
Sbjct: 170 AGHQARPEVLDDKIYHSSSMAMLESLSFIIEQIASEISYKCSGGGDAHATTMSILNMLSS 229

Query: 128 YSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETL 187
           Y+WDAK+V+ALAAF++ YGEFW+VAQ    N LAKSVA+LKQLP+ILE +  +KPRF+++
Sbjct: 230 YTWDAKLVIALAAFSMTYGEFWLVAQNCTSNQLAKSVAILKQLPDILEHSSMLKPRFDSV 289

Query: 188 SNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGL 247
            +LI  ML + KCIVE ++LP  YIT D P ++   AH+P +VYW IRSIVACA QI+GL
Sbjct: 290 KSLIKVMLAIAKCIVEFQDLPPRYITMDVPALSTAMAHLPISVYWTIRSIVACASQIIGL 349

Query: 248 IGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMET 307
           IG+ HE+I STTE WELSSLAHK++++ +HL  QL LC++ I+E++ +E+YQ L+ L + 
Sbjct: 350 IGLAHEHIASTTEAWELSSLAHKLSNMQSHLQNQLGLCYKHIDERKHMETYQNLIHLFDM 409

Query: 308 IHIDNMKVLNRLLIHTKDDQLPLVECPTKRKV-SIDVLRRKSVLLLVSDLDVSNEELFLL 366
            HIDNM+VL + LI++KDD  PL+E  TKR+V +IDVLRRK+VLLL+SDLD++ +E+ +L
Sbjct: 410 AHIDNMRVL-KALIYSKDDIQPLLEGTTKRRVVNIDVLRRKNVLLLISDLDITQDEISIL 468

Query: 367 EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 426
           EQ+Y ESR   S+ ESQYE+VWLPI+D + P+ +    KFEALQ +M W+S+HHPS ID 
Sbjct: 469 EQIYNESRLYPSKQESQYEIVWLPILDPAVPFNDIMLKKFEALQSVMTWYSIHHPSLIDR 528

Query: 427 AVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETW 486
           AVI + KEKW+F KKPILVVLDPQGRV   NA+HMMWIWGS+AFPF+  REEALWKEE+W
Sbjct: 529 AVITFVKEKWNFGKKPILVVLDPQGRVACPNAVHMMWIWGSLAFPFTTIREEALWKEESW 588

Query: 487 RIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKS 546
           R++LL   +DP+I  WI E ++ICLYGGED+EW+RKFT+   AVA+AAGI L M+YVGKS
Sbjct: 589 RLELLVAGIDPIITNWIEEGRYICLYGGEDMEWIRKFTSTARAVAQAAGIPLGMVYVGKS 648

Query: 547 NPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVT 606
           NPKE+ RR +STI VEKLSH   D T IW+FWVR+ESMW SK + G   + D +M+EI+ 
Sbjct: 649 NPKERVRRNVSTIMVEKLSHYWQDLTSIWYFWVRIESMWRSKNQLGKTSENDSLMKEIMA 708

Query: 607 MLSFDGSDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENR 665
           MLSFD S+ GWA+ ++G   + KAK    L CL++YT W+  + +K F+ ++ DYL    
Sbjct: 709 MLSFDSSEGGWAIFTKGTEELVKAKGSISLTCLSDYTIWKDQIQQKGFLPSLKDYLKSLH 768

Query: 666 TPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
           T +HCNRLILP  AG IPEK+VC EC R ME +I+Y+CC +
Sbjct: 769 TEHHCNRLILPSSAGMIPEKIVCTECSRNMERYILYKCCDE 809

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572050|ref|XP_002526966.1| conserved hypothetical protein [Ricinus communis] gi|223533718|gb|EEF35453.1| conserved hypothetical protein [Ricinus communis]

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/700 (57%), Positives = 532/700 (76%), Gaps = 5/700 (0%)

Query: 11  QPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFI--- 67
           Q +  +R +F++SD+NAM +Q+QATH+PDGREF+VKPLL I+E+IF RAAP+        
Sbjct: 94  QLIKGDRLLFSSSDENAMTKQIQATHSPDGREFDVKPLLNIVENIFDRAAPTIESLALPA 153

Query: 68  QETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTS 127
              QA+ D LDDK + S F  ML+ LS  I+R++ EI+ KCS GG+AHA T+ I N ++S
Sbjct: 154 AAHQARPDALDDKTYHSSFMAMLESLSFVIDRVASEITYKCSSGGEAHAITMSILNTLSS 213

Query: 128 YSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETL 187
           Y+WDAK+VLALAAFA+ YG FW+VAQ + +N LAKS+A+LK +P+ILE +  +KPRF+++
Sbjct: 214 YTWDAKLVLALAAFAMTYGNFWLVAQNYTLNQLAKSMAILKHMPDILEHSSMLKPRFDSI 273

Query: 188 SNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGL 247
            +LI  ML + KCIVE +ELP  YIT D P ++A  AH+P +VYW IRSIVACA QI GL
Sbjct: 274 KHLIMVMLAIAKCIVEFQELPPQYITIDVPALSAAIAHLPISVYWTIRSIVACASQITGL 333

Query: 248 IGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMET 307
           IG+GHE+I STTE WELSSLAHK++++ +HL  QL LC++ I+E++ +E+YQ L+RL E 
Sbjct: 334 IGLGHEHIASTTEAWELSSLAHKLSNMQSHLQNQLGLCYKHIDERKHMETYQNLLRLFEM 393

Query: 308 IHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLE 367
            HIDNM+VL + LI++KDD  PL+E  TKR+V+IDVLRRK+VLLL+SDLD++ +E+ +LE
Sbjct: 394 AHIDNMRVL-KALIYSKDDIQPLLEGTTKRRVNIDVLRRKNVLLLISDLDITQDEISILE 452

Query: 368 QMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA 427
           Q+Y ESR   S+ ES+YE+VWLPI D + P+ +    KF+ALQ  M W+S++HPS ID A
Sbjct: 453 QIYNESRLHPSKQESRYEIVWLPIRDPAVPFNDNMLKKFQALQSGMTWYSIYHPSLIDRA 512

Query: 428 VIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWR 487
           VI++ KE+W+F KKPILVVLDPQGRV   NALHMMWIWGSVAFPF+  REEALWKEE+WR
Sbjct: 513 VIKFIKEEWNFGKKPILVVLDPQGRVACPNALHMMWIWGSVAFPFTTIREEALWKEESWR 572

Query: 488 IDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSN 547
           +++L D +DP+I  WI E +++CLYGGED+EW+R FT    AVA+A+GI L M+YVGKSN
Sbjct: 573 LEILVDGIDPIITNWIDEGRYVCLYGGEDMEWIRNFTNTARAVAQASGIPLGMVYVGKSN 632

Query: 548 PKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTM 607
           PKE+ RR +STI VEKLSH   D T IW+FWVR+ESMW SK + G   + D +M+EI++M
Sbjct: 633 PKERVRRNVSTIMVEKLSHYWQDLTSIWYFWVRIESMWRSKNQLGKNSENDLVMKEIMSM 692

Query: 608 LSFDGSDQGWAVISR-GPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRT 666
           LSFD S+ GWA+ SR    + KAK    L CL++YT W+  + +K F+ ++ DYL    T
Sbjct: 693 LSFDSSEGGWAIFSRMADEVVKAKGNIFLTCLSDYTVWKDQIQQKGFLPSVKDYLKGLHT 752

Query: 667 PYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            +HCNRLILP  AG IPEK+VC +CG  ME +I+Y+CC +
Sbjct: 753 EHHCNRLILPSSAGMIPEKIVCTDCGLNMERYILYKCCDE 792

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|393191329|gb|AFN06073.1| sieve element occlusion protein 2 [Nicotiana tabacum]

 Score =  825 bits (2132), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/709 (56%), Positives = 518/709 (73%), Gaps = 10/709 (1%)

Query: 6   VPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPG 65
            P R+ P   + H+F TSDDNAM++ ++ TH+PDGR+F+VKPLL+ IEDI  RA P+ PG
Sbjct: 80  TPNRIHPRRGDHHLFLTSDDNAMMKHIEDTHSPDGRDFDVKPLLHTIEDIVHRA-PAIPG 138

Query: 66  FIQETQAQ--LDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFN 123
            +   QAQ  L+ L++K   SG  ++L+ L+  I+RIS E+ CKC+   D H+TT+ + +
Sbjct: 139 HLHGGQAQAHLEALEEKVPHSGLSEILNYLAYPIHRISMELICKCANKEDPHSTTMALLH 198

Query: 124 IVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPR 183
            +T+Y+WD KV +  AAFA  YGEFW++   +P NPLAKSVA++K+LPEI+ER D +KP+
Sbjct: 199 SLTTYAWDTKVAITFAAFAQQYGEFWLLVHQYPTNPLAKSVAIIKELPEIMERTDVLKPK 258

Query: 184 FETLSNLITAMLDLTKCIVEVKELPSD---YITPDTPEMAAVTAHIPTAVYWIIRSIVAC 240
           F+ +S+LI  MLD+TKCI+E +++ +    Y      EM   TAHI TA YW IR+ V C
Sbjct: 259 FDAISDLINKMLDVTKCIIEFRDIRTSHHQYAITQELEMLINTAHISTAAYWTIRAAVMC 318

Query: 241 AGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQA 300
              IL LI  GHEY+ +T+ETWE+SSLAHK+ +I + L + L  C+Q IEEKRQ ++++A
Sbjct: 319 TAIILNLIATGHEYMSTTSETWEISSLAHKLANILDLLRKVLNQCYQKIEEKRQHDAFEA 378

Query: 301 LVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSN 360
           L+RL+ T HIDNMK+L+ +LI++KDDQLPL +   KR+VS+DVLRRK VLLL+SDLD++ 
Sbjct: 379 LLRLLRTPHIDNMKILS-ILIYSKDDQLPLFDGTHKRRVSLDVLRRKHVLLLLSDLDIAP 437

Query: 361 EELFLLEQMYRESRQLSSRTESQYEVVWLPIVD-RSTPWTEAKEHKFEALQYMMPWFSVH 419
           EELF+L  MY ES+   SR ES YEVVW+P+VD R TPWTEAK+ KFE +Q  MPW+SV 
Sbjct: 438 EELFILHHMYAESKAQPSRPESNYEVVWIPVVDKRLTPWTEAKQMKFEQVQASMPWYSVA 497

Query: 420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEA 479
           HPS IDPAVIRY KE W F KKP LVVLDPQG+  N NA HM+WIWGS+AFPF+ AREEA
Sbjct: 498 HPSMIDPAVIRYIKEIWGFNKKPQLVVLDPQGKETNNNAYHMLWIWGSLAFPFTKAREEA 557

Query: 480 LWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALE 539
           LW+E+TW I+LLADS+D  I TWI E K ICLYGGED+EW+R FT +  AVA AA I LE
Sbjct: 558 LWREQTWNIELLADSIDQNIFTWIGEGKCICLYGGEDIEWIRDFTTVTRAVANAARIPLE 617

Query: 540 MLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDP 599
           MLYVGK NPKE+ R+  + I VE LSH + D TLIWFFW RLESMWHS+ +     + DP
Sbjct: 618 MLYVGKRNPKERVRKNSAIIQVENLSHVVQDQTLIWFFWERLESMWHSRTQQDIPGETDP 677

Query: 600 IMQEIVTMLSFDGSDQGWAVISRG-PHMAKAKDETILKCLTEYTTWEPNVPE-KSFVVAM 657
           I+QEIVT+LS+DGSDQGWAV SRG   M + K + +++ +  +  W+  V +   FV ++
Sbjct: 678 ILQEIVTILSYDGSDQGWAVFSRGLAEMTRGKGDLMVQVMRGFERWKHEVTDITEFVPSV 737

Query: 658 NDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
           +  L    TP+HC RLILPG  G IPE+VVCAEC R ME+FIMY CC D
Sbjct: 738 DRQLRALHTPHHCTRLILPGTTGHIPERVVCAECSRPMEKFIMYSCCID 786

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806314|ref|NP_001240968.1| uncharacterized protein LOC100799626 [Glycine max] gi|307101644|gb|ADN32787.1| sieve element occlusion e [Glycine max]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/705 (55%), Positives = 519/705 (73%), Gaps = 5/705 (0%)

Query: 4   SIVPYRMQPVGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSF 63
           ++VP +MQ     RH+F+ SDD  M + ++ATHAP      V+PLL++++DIF RAA   
Sbjct: 2   AMVPRKMQS-RPSRHIFSASDDTTMTKNIRATHAPVDGHIGVRPLLHVVQDIFHRAASLI 60

Query: 64  PGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFN 123
           PG +Q  Q Q+D + D A+QS   +++D+   TIN+ISCEI CKCS GGD HATT+GI  
Sbjct: 61  PGIVQGKQVQMDAMKDSAYQSDLANVIDISYHTINKISCEICCKCSSGGDVHATTMGILG 120

Query: 124 IVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPR 183
           +++SYSWDAKVV+ALAAFA N+GEFW+VAQL+  N LAKSVA LK + E LE+ D + P+
Sbjct: 121 MLSSYSWDAKVVIALAAFAANFGEFWLVAQLYATNRLAKSVAKLKHIHETLEQVDDLGPK 180

Query: 184 FETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQ 243
           F+T++NL+ AMLD+T  IV+  ELPS YI P+ PEM   +  IP AVYW IRSIV+CA  
Sbjct: 181 FQTVNNLLKAMLDVTNNIVQFHELPSQYIDPEAPEMLTASNLIPGAVYWTIRSIVSCASH 240

Query: 244 ILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVR 303
           ILG+ G+G  Y+ STTETWELSSLAHK+++I +HL +QL +C Q +++ RQ E++  L  
Sbjct: 241 ILGITGLGQGYMTSTTETWELSSLAHKLDNINSHLRKQLTVCRQHLDDNRQREAFATLRL 300

Query: 304 LMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDL-DVSNEE 362
           L ET H DN KVL  +   +KDD LPL +  +K++VSI+VLRRK VLL ++D+ +V ++E
Sbjct: 301 LFETPHQDNSKVLKAMFC-SKDDPLPLFDGSSKQRVSIEVLRRKIVLLYITDVHNVPDQE 359

Query: 363 LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 422
           L + EQMY+ESRQ S+R ESQYE+VW+P+VD++ PW + K  KFE LQ MM  +S++ PS
Sbjct: 360 LVIFEQMYQESRQDSTRLESQYELVWIPVVDKAIPWNDVKP-KFEKLQSMMSCYSLYDPS 418

Query: 423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWK 482
            ++PA IRY KE W F+ KPILVVLDPQG+VVN NA+ MMWIWGS+A+PFS +REEALW 
Sbjct: 419 LLEPATIRYIKEVWLFKTKPILVVLDPQGKVVNLNAIPMMWIWGSLAYPFSSSREEALWN 478

Query: 483 EETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLY 542
            ETW + LLADS+DP +  WI E K+ICLYGG+D+EW+RKFT    ++AR   + LEM+Y
Sbjct: 479 AETWGLVLLADSIDPSLLEWISEGKYICLYGGDDIEWIRKFTNTAYSLARTLQLPLEMIY 538

Query: 543 VGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQ 602
           VGKSNP +K + I + +  EKLS+ LPD  + WFFWVRLESMWHSK +    V+ D IM 
Sbjct: 539 VGKSNPGKKVQEINNAVQTEKLSNVLPDLAISWFFWVRLESMWHSKSQQSKTVENDHIMH 598

Query: 603 EIVTMLSFDGSDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYL 661
           E++ +L++D  D GWAVIS+G   MA+ K +T LKCL E+  W+    +K  + AM+DY+
Sbjct: 599 EVMRILTYDSGDPGWAVISQGTGKMAQGKGDTFLKCLNEHEQWKDAAKDKGLLPAMDDYI 658

Query: 662 NENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            E +TP+HCNRLILPG +G IP+KV CAECG+ ME+F MYRCC +
Sbjct: 659 KELQTPHHCNRLILPGTSGGIPDKVSCAECGQTMEKFYMYRCCNE 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733661|emb|CBI14908.3| unnamed protein product [Vitis vinifera]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/695 (56%), Positives = 515/695 (74%), Gaps = 7/695 (1%)

Query: 14  GRERHMF-ATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQA 72
           GR+   F   SDD  M++Q+QATH PDGRE  VKP++ +IEDI   A P+  G +     
Sbjct: 19  GRDHPKFLRMSDDTTMMKQIQATHTPDGREVEVKPIVQVIEDILNHATPAIDGTLYGNPP 78

Query: 73  QLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDA 132
            L+ L+D++ Q G   +L+ L+ TI ++SCE+SCKCSGGGDAHATT+ +FN+++ YSWDA
Sbjct: 79  HLEALEDRSSQDGLHGILEELAYTIQKLSCELSCKCSGGGDAHATTMAVFNMLSHYSWDA 138

Query: 133 KVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLIT 192
           KVVL+LAAFA NYGEFW+V QL+  NPLAKSVALLKQLP+I+E  +++K RF+ ++ LI 
Sbjct: 139 KVVLSLAAFAANYGEFWLVIQLYATNPLAKSVALLKQLPDIIEHGNSLKSRFDAVTKLIK 198

Query: 193 AMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGH 252
            MLD+TK I+E KELPS YI+PD P M++  AHIPTA YW IR IVACA QI+ LIG  +
Sbjct: 199 VMLDVTKSIIEFKELPSLYISPDMPPMSSTMAHIPTAAYWTIRGIVACASQIISLIGTSN 258

Query: 253 EYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDN 312
           EY   TTE+WELS+LAHK++SI+ HL+QQL +CHQ IEEK+Q ESY  LVR+ E  H+DN
Sbjct: 259 EYTSWTTESWELSTLAHKVSSIHEHLIQQLIICHQHIEEKKQFESYNNLVRIFEMPHLDN 318

Query: 313 MKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRE 372
            KVL + LI+ K+D  PL++  TK +V+I++LRRK+VLLL+SDLD+ +EE+ +L + YRE
Sbjct: 319 QKVL-KTLIYAKEDIQPLLQGNTKARVNIEILRRKTVLLLISDLDLLHEEIVILHKFYRE 377

Query: 373 SRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYA 432
             Q+ S  E  YEVVWL +VDRS P TE  ++KF  LQ  MPW+++ HPS ++PAV+RY 
Sbjct: 378 --QIKSDVE--YEVVWLSVVDRSKPLTEENQNKFHELQKEMPWYTLLHPSLLEPAVVRYI 433

Query: 433 KEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLA 492
           KE W F KK ILVVLD QG+VV +NALHMMWIWG+ A+PF+ ++EE+LWKEETWR+ LL 
Sbjct: 434 KEVWHFTKKAILVVLDLQGKVVCRNALHMMWIWGNTAYPFTNSKEESLWKEETWRLKLLV 493

Query: 493 DSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKA 552
           D +D  I  W+ + K+IC+YGG + +W+  F      VA+AAGI LEM+YVGKSN KE+ 
Sbjct: 494 DDIDATIFAWVNQGKYICMYGGVNSDWILNFNTAAREVAKAAGIQLEMVYVGKSNAKEQV 553

Query: 553 RRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDG 612
           R+ I+ I    L +   DPT IWFFW R+ESM +SK + G  ++ D I   ++TMLSFDG
Sbjct: 554 RKTITFIDSRSLGYCWTDPTNIWFFWTRMESMLYSKTQHGKTIENDSIFAGVLTMLSFDG 613

Query: 613 SDQGWAVISRGP-HMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCN 671
           SDQGW+VI  GP  MAKAK + ILKC TEY+ W  NV +  F+ A+N++L +  TP HCN
Sbjct: 614 SDQGWSVICHGPTEMAKAKGDMILKCFTEYSDWSDNVQQNGFMPALNEHLQKLHTPEHCN 673

Query: 672 RLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
           RLILPG  G IPEKVVCAECGR ME++ MYRCCTD
Sbjct: 674 RLILPGINGDIPEKVVCAECGRPMEKYFMYRCCTD 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488786|ref|XP_002271518.2| PREDICTED: uncharacterized protein LOC100245845 [Vitis vinifera]

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/710 (56%), Positives = 514/710 (72%), Gaps = 12/710 (1%)

Query: 1   MATSIVPYRMQP-VGRERHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRA 59
           +A+ + P  +Q  +  +R M   SDDNAM++Q+ ATHA DGR+ +V+PL  ++EDI  R+
Sbjct: 71  LASKMAPISLQQMIKGDRSMITMSDDNAMMKQIHATHAHDGRQIDVRPLYQLVEDILNRS 130

Query: 60  APSFPGFIQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTL 119
            P        T+ +++ L+D+   +GF  M++ LS TI+RISCEI+CKCS GGDAHATTL
Sbjct: 131 TPG------TTETRVEPLEDRTQHAGFIAMIEALSFTIDRISCEIACKCSAGGDAHATTL 184

Query: 120 GIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADT 179
            IFN++ SYSWDAK+VL LAAFALNYGEFW++AQ++  N LAKS+A+LKQ+P +LE +  
Sbjct: 185 SIFNMLASYSWDAKLVLTLAAFALNYGEFWLLAQIYSSNQLAKSMAILKQVPILLEHSAL 244

Query: 180 MKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVA 239
           +KPRF+ L+NLI AM+D+T+CI+E KELP  YIT D P ++   AHIPTAVYW IRSIVA
Sbjct: 245 LKPRFDALNNLIRAMMDVTRCIIEFKELPPMYITQDVPALSIAMAHIPTAVYWTIRSIVA 304

Query: 240 CAGQILGLIGMGHEYIISTT-ETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESY 298
           CA QI  L  MGHEY ISTT ETWELS+LAHKINSI +HL +QL +C+Q IEEKR +E+Y
Sbjct: 305 CATQIASLTSMGHEYAISTTNETWELSTLAHKINSILDHLKKQLFICYQYIEEKRNVETY 364

Query: 299 QALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDV 358
           Q L  L ++IHIDNMK+L + LI+ KDD  PLV+  TKR+V IDVLRRK+VLLL+SDLD+
Sbjct: 365 QMLQNLFQSIHIDNMKIL-KALIYAKDDMQPLVDGSTKRRVHIDVLRRKNVLLLISDLDI 423

Query: 359 SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 418
           S +EL +LEQ+Y ESR  ++R ESQYEVVW+PIVD S  W +  + +FE LQ  MPWFSV
Sbjct: 424 SQDELSILEQIYNESRVHATRMESQYEVVWVPIVDHSLEWADPVQKQFENLQATMPWFSV 483

Query: 419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREE 478
           H P+ ID AVIR+ KE W FR KPILVVLDPQG+VV+ NA+HMMWIWGS AFPF+  REE
Sbjct: 484 HSPTLIDKAVIRFIKEVWHFRNKPILVVLDPQGKVVSPNAIHMMWIWGSNAFPFTSLREE 543

Query: 479 ALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIAL 538
           ALWKEETW+++LL D  DP I  WI E K I LYGG D+EW+RKFT    AVA AA I L
Sbjct: 544 ALWKEETWKLELLVDGTDPTILNWIKEGKFIYLYGGTDMEWIRKFTTTAKAVASAARIPL 603

Query: 539 EMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQD 598
           EM+YVGKS  +E+ RR I++I+ EKLSH   D T++WFFW RLESM  SK++ G    QD
Sbjct: 604 EMVYVGKSTKREQVRRCIASITAEKLSHCWQDLTMVWFFWTRLESMLFSKIQLGQADDQD 663

Query: 599 PIMQEIVTMLSFDGSDQGWAVISRGPH-MAKAKDETILKCLTEYTTWEPNVPEKSFVVAM 657
           P+M EI  +LS+D  + GWAV+S+G          TIL  L  Y  W+ +V  K F +A 
Sbjct: 664 PMMHEIKKLLSYD-KEGGWAVLSKGSFTFVNGHGTTILPTLLAYEEWQEHVVTKGFDIAC 722

Query: 658 NDYLNENRTPYH-CNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
            DY ++  +    C R      +GRIP+K+ C EC R ME++I + CC D
Sbjct: 723 MDYHSKVHSDSRPCCRFEFLSTSGRIPDKMKCPECIRNMEKYITFLCCHD 772

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	706
TAIR|locus:2084158	740	SEOR1 "Sieve-Element-Occlusion	0.958	0.914	0.398	1.5e-140
TAIR|locus:2084143	822	SEOa "sieve element occlusion	0.956	0.821	0.381	6.6e-129
TAIR|locus:2008590	576	AT1G67790 "AT1G67790" [Arabido	0.451	0.553	0.311	2.3e-70

TAIR|locus:2084158 SEOR1 "Sieve-Element-Occlusion-Related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1375 (489.1 bits), Expect = 1.5e-140, P = 1.5e-140
 Identities = 279/701 (39%), Positives = 416/701 (59%)

Query:    22 TSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGFIQETQAQLDVL--DD 79
             +SD++ ML+ +Q TH+PD RE  V+ LL ++EDI  RA        ++T A +  L  +D
Sbjct:    37 SSDESMMLKLIQQTHSPDAREVQVRGLLSLVEDILDRATLDS----EDTNASMLPLPTED 92

Query:    80 KAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVXXXX 139
             K  QS    +LD +S  I+R++CEI+ K   G D+H  T+ +F  ++S+ WD K+V    
Sbjct:    93 KLMQSSMMSVLDSVSYAIDRVACEIAYKSLTGSDSHEITMSVFEHLSSFQWDGKLVLTLA 152

Query:   140 XXXXNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTMKPRFETLSNLITAMLDLTK 199
                 NYGEFW++ Q +  N LAKS+A+LK +P  ++   T++   + L++LI  M  +T 
Sbjct:   153 AFALNYGEFWLLVQFYSKNQLAKSLAMLKLVP--VQNRVTLESVSQGLNDLIREMKSVTA 210

Query:   200 CIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTT 259
             C+VE+ ELP  YITPD P+++ + + IP AVYW IRS++AC  QI  +  MGHE + +  
Sbjct:   211 CVVELSELPDRYITPDVPQLSRILSTIPIAVYWTIRSVIACISQINMITAMGHEMMNTQM 270

Query:   260 ETWELSSLAHKINSIYNXXXXXXXXXXXXIEEKRQIESYQALVRLMETIHIDNMKVLNRL 319
             + WE S LA+K+ +I++            IE++R  ES + L  L +T HIDNMK+L  L
Sbjct:   271 DLWETSMLANKLKNIHDHLAETLRLCYRHIEKQRSSESLKVLHSLFDTTHIDNMKILTAL 330

Query:   320 LIHTKDDQLPLVECPTKRKVSIXXXXXXXXXXXXXXXXXXNEELFLLEQMYRESRQ---- 375
              +H K    PL +  TKRKV +                   +EL + EQ+Y ESR+    
Sbjct:   331 -VHPKPHITPLQDGLTKRKVHLDVLRRKTVLLLISDLNILQDELSIFEQIYTESRRNLVG 389

Query:   376 LSSRTESQYEVVWLPIVDRSTPWTEAK--EHKFEALQYMMPWFSVHHPSAIDPAVIRYAK 433
             +  ++   YEVVW+P+VD    +  +   + KFE L+  MPW+SV  P  I+  V+ + +
Sbjct:   390 VDGKSHMPYEVVWVPVVDPIEDFERSPILQKKFEDLRDPMPWYSVDSPKLIERHVVEFMR 449

Query:   434 EKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLAD 493
              +W F  KPILVV+DPQG   + NALHM+WIWG+ AFPF+ +REE LW+ ET+ ++L+ D
Sbjct:   450 GRWHFMNKPILVVIDPQGNEASLNALHMIWIWGTEAFPFTRSREEELWRRETFSLNLIVD 509

Query:   494 SVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNP--KEK 551
              +D VI  WI    +I LYGG+DL+W+R+FT    A A+ + + LEM YVGK N   +E+
Sbjct:   510 GIDSVIFNWIKPDNYIFLYGGDDLDWIRRFTMAAKATAKDSNVNLEMAYVGKRNHSHREQ 569

Query:   552 ARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFD 611
              RRI   I  E LSH+  +P L+WFFW RLESM +SK++ G     D +MQ I  +LS+D
Sbjct:   570 IRRISEVIRSENLSHSWAEPALMWFFWTRLESMLYSKIQLGKADDHDDVMQGIKKILSYD 629

Query:   612 GSDQGWAVISRGPHMAKAKDETILKCLTEYT-TWEPNVPEKSFVVAMNDYLNEN---RTP 667
                 GWA++S+GP +       I + ++ Y  TW+ +VP K +  AM+D+ ++     T 
Sbjct:   630 KLG-GWALLSKGPEIVMIAHGAIERTMSVYDRTWKTHVPTKGYTKAMSDHHHDEVLRETG 688

Query:   668 YHCNRLI--LPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 706
               C      +   +GRIPEK+ C EC R ME+++ + CC D
Sbjct:   689 KPCGHFDFHITARSGRIPEKMNCFECQRPMEKYMSFSCCHD 729

GO:0005634 "nucleus" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2084143 SEOa "sieve element occlusion a" [Arabidopsis thaliana (taxid:3702)]

 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 278/728 (38%), Positives = 397/728 (54%)

Query:     7 PYRMQPVGRE-RHMFATSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPG 65
             P + Q   R  R MF+ SDD  M  +V  TH+PD   F+V  LL ++ DIF+   PS   
Sbjct:   120 PGKKQAFHRNGRPMFSLSDDRVMADRVLKTHSPDMIFFDVTSLLSVVNDIFKSHVPSIDS 179

Query:    66 FIQETQAQL-DVLDDKAFQSGFFDMLDLLSSTINRISCEISCKCSGGGDAHA-------- 116
                +      D  D  +F++ F D++D       +ISCEI CKC  GG++H         
Sbjct:   180 SAPKPSLVFKDYADHTSFET-FADLID-------QISCEIDCKCLHGGESHGMMTSGLHL 231

Query:   117 -----TTLGIFNIVTSYSWDAKVVXXXXXXXXNYGEFWVVAQLFPVNPLAKSVALLKQLP 171
                  TT  + ++V+ Y WDAK+V         YG F ++A+    N L KS+AL+KQLP
Sbjct:   232 DSRNTTTFSVLSLVSKYRWDAKLVLVLSALAVKYGVFLLLAETHATNQLTKSLALIKQLP 291

Query:   172 EILERADTMKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVY 231
              I  R + +  R +    L+  M+DLT  I+++ +LP ++IT      AA T HIPTAVY
Sbjct:   292 SIFSRQNALHQRLDKTRILMQDMVDLTTTIIDIYQLPPNHIT------AAFTDHIPTAVY 345

Query:   232 WIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNXXXXXXXXXXXXIEE 291
             WI+R ++ C   I G  G   + I+S  E  E+   + ++  I              IEE
Sbjct:   346 WIVRCVLICVSHISGASGFKQDQIMSFMEVSEIHENSERLRKINAYLLEQFKKSKMTIEE 405

Query:   292 KRQIESYQALVRLMETI-HIDNMKVLNRLLIHTKDDQLPLVECPTKRKVSIXXXXXXXXX 350
                 E YQ L++   TI H+D +  L RLL     D L      +KR+V I         
Sbjct:   406 GIIEEEYQELIQTFTTIIHVDVVPPLLRLL--RPIDFLYHGAGVSKRRVGINVLTQKHVL 463

Query:   351 XXXXXXXXXNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 410
                       +EL++LE +Y E+ Q S      +E++W+P+ D    WTEA + KFEAL 
Sbjct:   464 LLISDLENIEKELYILESLYTEAWQQS------FEILWVPVQDF---WTEADDAKFEALH 514

Query:   411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF 470
               M W+ +  P  +  A IR+ +E W F+ +PILV LDP+G+V++ NA  M+WIW   A 
Sbjct:   515 MNMRWYVLGEPRKLRRAAIRFVREWWGFKNRPILVALDPKGQVMSTNAFPMVWIWQPFAH 574

Query:   471 PFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAV 530
             PF+ ARE  LW E+ W ++ L D  DP     +++ K+ICLYGGED++W++ FT+L   V
Sbjct:   575 PFTTARERDLWSEQEWNLEFLIDGTDPHSLNQLVDGKYICLYGGEDMQWIKNFTSLWRNV 634

Query:   531 ARAAGIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMK 590
             A+AA I LEM+YVGK NPK   + II+TI  E LSHTLPD   IWFFW R+ESMW SK +
Sbjct:   635 AKAANIQLEMVYVGKRNPKNGIQPIINTIREENLSHTLPDLFQIWFFWTRVESMWESKQR 694

Query:   591 F----GTK-------VQQDPIMQEIVTMLSFDGSDQGWAVISRGPHM-AKAKDETILKCL 638
                  G K        ++D ++QE+V ML + G   GW ++S+   M  +AK     + L
Sbjct:   695 MLKAHGIKGREGFKEEEKDLVLQEVVAMLGYGGEGDGWGLVSKASDMMVRAKGNLFSRGL 754

Query:   639 TEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEF 698
              E+  WE N+P K F+ A+ND+L     P+HC R +LP  AG IP +V C EC R ME++
Sbjct:   755 AEFNEWEVNIPTKGFLTALNDHLLMRLPPHHCTRFMLPETAGIIPNEVECTECRRTMEKY 814

Query:   699 IMYRCCTD 706
              +Y+CC +
Sbjct:   815 YLYQCCLE 822

GO:0009507 "chloroplast" evidence=ISM

GO:0043621 "protein self-association" evidence=IPI

TAIR|locus:2008590 AT1G67790 "AT1G67790" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
 Identities = 107/343 (31%), Positives = 175/343 (51%)

Query:   364 FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 423
             FLL+Q+Y      ++ TE  YE++W+PI   S  WT+ ++  F+     +PW SV  P  
Sbjct:   254 FLLQQLY--DHPSNTNTEQNYEIIWVPIPS-SQKWTDEEKEIFDFYSNSLPWISVRQPWL 310

Query:   424 IDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWK 482
             +   ++ + K++W ++  + +LVV+D  GR VN NA+ M+ IWG  A+PFSV+RE+ LWK
Sbjct:   311 MSSTILNFFKQEWHYKDNEAMLVVIDSNGRFVNMNAMDMVLIWGVKAYPFSVSREDELWK 370

Query:   483 EETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLY 542
             E  W I+LL D + P       E + IC++G E+L+W+ +F +L   +    G  LE++Y
Sbjct:   371 EHGWSINLLLDGIHPTF-----EGREICIFGSENLDWIDEFVSLARKIQNL-GFQLELIY 424

Query:   543 VGKSNPKEKARRIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMK--FGTKVQQDPI 600
             +      E+A        +E+ S  L  PTL   FW+RLES+  SK+K       + D +
Sbjct:   425 LSNQRRDERA--------MEE-SSILFSPTLQQLFWLRLESIERSKLKRIVIEPSKPDRV 475

Query:   601 MQEIVTMLSFD-GSDQGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPEKSFVVAMND 659
              +E+  +L FD G  +GW +I  G        E + + + +   W        F  A+  
Sbjct:   476 FEEVRNLLDFDYGKHRGWGIIGNGSTAETVDGEKMTERMRKIVRWGEYAKGLGFTEAIEI 535

Query:   660 YLNENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYR 702
                +     H    ++P E     + V C +C   M+ F+ Y+
Sbjct:   536 AAEKPCELSHT--AVVPFEEALTMKVVTCEKCKWPMKRFVAYQ 576

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030722001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (618 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	706
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	8e-04

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 410 QYM--MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGS 467
            Y   MPW +V  P + D          +     P L++LD  G VV  +A  ++  +G+
Sbjct: 70  DYFSKMPWLAV--PFS-DRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGA 126

Query: 468 VAFPF 472
            AFPF
Sbjct: 127 DAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	706
PF14576	286	SEO_N: Sieve element occlusion N-terminus	100.0
PF14577	235	SEO_C: Sieve element occlusion C-terminus	100.0
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.9
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.82
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.76
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.74
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.47
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.6
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.6
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.56
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.55
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.4
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.35
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.27
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.24
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.17
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.15
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.15
PLN02412	167	probable glutathione peroxidase	98.14
PTZ00256	183	glutathione peroxidase; Provisional	98.11
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.08
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.06
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.05
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.04
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.04
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.99
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	97.98
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.95
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.91
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.91
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.87
PTZ00056	199	glutathione peroxidase; Provisional	97.87
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.8
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.77
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.76
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.73
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	97.65
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.64
PRK13190	202	putative peroxiredoxin; Provisional	97.53
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	97.53
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.5
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.45
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.31
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.28
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.27
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.2
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.2
PRK15000	200	peroxidase; Provisional	97.18
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.16
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.13
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.13
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.07
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	96.94
PRK13191	215	putative peroxiredoxin; Provisional	96.85
PRK10606	183	btuE putative glutathione peroxidase; Provisional	96.85
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	96.7
PRK13189	222	peroxiredoxin; Provisional	96.65
PRK13599	215	putative peroxiredoxin; Provisional	96.63
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	96.62
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	96.57
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.33
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.28
PRK10996	139	thioredoxin 2; Provisional	96.13
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.13
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	96.07
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.02
PTZ00051	98	thioredoxin; Provisional	95.91
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	95.76
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	95.65
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	95.52
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	95.49
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	95.42
PRK09381	109	trxA thioredoxin; Provisional	95.38
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	95.26
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.18
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	95.16
PHA02278	103	thioredoxin-like protein	95.05
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	95.04
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	95.04
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	94.89
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	94.88
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	94.52
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.46
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	94.3
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	94.3
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	94.29
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	94.22
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	94.1
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.52
PTZ00102	477	disulphide isomerase; Provisional	93.49
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	93.46
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	93.16
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	92.98
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	92.93
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	92.87
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.8
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	92.76
cd02947	93	TRX_family TRX family; composed of two groups: Gro	92.19
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	92.02
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	91.52
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.23
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	90.61
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	90.29
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	90.11
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	89.75
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	89.72
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	89.52
PTZ00062	204	glutaredoxin; Provisional	89.46
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	89.02
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	88.52
smart00594	122	UAS UAS domain.	88.3
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	88.2
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	87.87
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	87.4
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	86.42
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	86.36
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	86.22
PTZ00102	477	disulphide isomerase; Provisional	85.32
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	85.28
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	84.28
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	84.03
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	83.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	83.48
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	83.43
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	82.8
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	82.26
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	80.9
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	80.58

>PF14576 SEO_N: Sieve element occlusion N-terminus

Probab=100.00  E-value=3e-110  Score=864.70  Aligned_cols=285  Identities=61%  Similarity=1.015  Sum_probs=272.5

Q ss_pred             cCcchHHHHHHHhhcCCCCcccChhHhHHHHHHHHhhhcCCCCcc-ccchhhhhcccccccccccccccchhhhhhhhhh
Q 005245           22 TSDDNAMLRQVQATHAPDGREFNVKPLLYIIEDIFQRAAPSFPGF-IQETQAQLDVLDDKAFQSGFFDMLDLLSSTINRI  100 (706)
Q Consensus        22 ~sdd~i~~~~I~~TH~~d~~~~Dv~~L~~ive~Il~~a~~~~d~~-~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~i~~I  100 (706)
                      +|||++||||||+||+||||+|||+|||++||||++||+++++.. ....+.+.+.++++..+.++.++++|++++||||
T Consensus         1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI   80 (286)
T PF14576_consen    1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI   80 (286)
T ss_pred             CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence            478888899999999999999999999999999999999987332 2344555556668888889999999999999999


Q ss_pred             hheeecccCCCCchhhhHHHHHhhhccCcchHHHHHHHHHHHHhhccchhccccCCCChHHHHHHHHhcchhhhhccccC
Q 005245          101 SCEISCKCSGGGDAHATTLGIFNIVTSYSWDAKVVLALAAFALNYGEFWVVAQLFPVNPLAKSVALLKQLPEILERADTM  180 (706)
Q Consensus       101 scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~vLtLAAFAl~YGeFwlL~q~~~~n~LakSlA~Lkqvp~i~~~~~~~  180 (706)
                      ||||+|||+||+|||+|||+|||+||+|||||||||||||||+||||||+|+|+|++||||||||+|||||+|+||.+++
T Consensus        81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~~~l  160 (286)
T PF14576_consen   81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHSDSL  160 (286)
T ss_pred             HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhhhHHHHHHHHHhhhhhhccCCCcCCCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhcccccccccccccccc
Q 005245          181 KPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTE  260 (706)
Q Consensus       181 k~~~~~ln~Lvk~m~~V~~cIie~~~L~~~y~~~dvpal~~a~~~IP~~vYW~I~siVac~~qi~~l~~~~~~~~~s~~~  260 (706)
                      ||||+++|+|||+||||++||+||++||++||++|||+|++|++|||+||||||||+|||++||++||+|||| +.++++
T Consensus       161 k~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~~  239 (286)
T PF14576_consen  161 KPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTTE  239 (286)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 899999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 005245          261 TWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHI  310 (706)
Q Consensus       261 ~~eLS~l~~Kl~~i~~~L~~ql~~c~~~I~~~~~~e~y~~l~~lf~~~~~  310 (706)
                      +||||+|+|||++|++|||+||++|+||||+   +|+|++|+++|++||+
T Consensus       240 ~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~  286 (286)
T PF14576_consen  240 AWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI  286 (286)
T ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999   9999999999999985

>PF14577 SEO_C: Sieve element occlusion C-terminus

Probab=100.00  E-value=9.9e-95  Score=730.40  Aligned_cols=233  Identities=56%  Similarity=1.083  Sum_probs=230.2

Q ss_pred             hhhHHHhhhhcccccccccccCCCCccccccCceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhh
Q 005245          474 VAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKAR  553 (706)
Q Consensus       474 ~~r~eeL~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~  553 (706)
                      ++|+|+||++|+|+|+||+|++||.|.+||+||||||||||+|++|||+||.++++||++|++++||+||||+||+|+||
T Consensus         1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~   80 (235)
T PF14577_consen    1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR   80 (235)
T ss_pred             CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccccccCCCCCCcchhhhHHHhhhhhhhhhccCCCCCCChhHHHHHHHhcccCCCCceEEEecCCc-ccccchh
Q 005245          554 RIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPH-MAKAKDE  632 (706)
Q Consensus       554 ~~~~~i~~e~ls~~~~d~t~v~~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LLs~~~~~~GWavlskGs~-~~~g~G~  632 (706)
                      +++++|+.|||||+|+|||+|||||+|||||++||+|+|+++++|++||||++||||||+++|||||||||+ +++|||+
T Consensus        81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~  160 (235)
T PF14577_consen   81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE  160 (235)
T ss_pred             HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             hHHHHHhhhcccCCCCCCCcHHHHHHHhhhhcC-CCCCccceecCCCCCCCCceeecCCCCcccceeeeecccCC
Q 005245          633 TILKCLTEYTTWEPNVPEKSFVVAMNDYLNENR-TPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD  706 (706)
Q Consensus       633 ~~l~tl~ef~~Wk~~v~~kGF~~Af~ey~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~i~YkCCh~  706 (706)
                      +|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+||||||+||+||+||||||
T Consensus       161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd  235 (235)
T PF14577_consen  161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD  235 (235)
T ss_pred             cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence            999999999999999999999999999999988 59999999999999999999999999999999999999997

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.90  E-value=1.2e-23  Score=202.86  Aligned_cols=133  Identities=24%  Similarity=0.340  Sum_probs=117.4

Q ss_pred             ccccCCCCceeecc-eecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHH
Q 005245          329 PLVECPTKRKVSID-VLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHK  405 (706)
Q Consensus       329 pl~dg~~~~kV~Is-~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~  405 (706)
                      ...-+..+..|.++ .|+||.|+|||||+||+||  |+|+|.+.|++++.    .+..|||||||.        |+++++
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~----~~~~fEVvfVS~--------D~~~~~   82 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD----NAAPFEVVFVSS--------DRDEES   82 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh----cCCceEEEEEec--------CCCHHH
Confidence            34556778899998 6999999999999998885  55799999999985    445999999974        899999


Q ss_pred             HHHhhcC--CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245          406 FEALQYM--MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE  483 (706)
Q Consensus       406 Fe~~~~~--MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  483 (706)
                      |++|+..  |||++|||.+    +.++.+.++|.+++||.|+++.|+|.++..||+.+|..+|.       .+-.+++++
T Consensus        83 ~~~y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e  151 (157)
T KOG2501|consen   83 LDEYMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE  151 (157)
T ss_pred             HHHHHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence            9999985  9999999987    78999999999999999999999999999999999999998       566677666


Q ss_pred             c
Q 005245          484 E  484 (706)
Q Consensus       484 e  484 (706)
                      |
T Consensus       152 w  152 (157)
T KOG2501|consen  152 W  152 (157)
T ss_pred             H
Confidence            4

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.82  E-value=7.2e-20  Score=167.84  Aligned_cols=125  Identities=24%  Similarity=0.408  Sum_probs=111.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.|++++++||.|+|+|.+.||++|..  +.|.++|+++++    .+.+++||+|++        |.+++.|..+.
T Consensus         5 ~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~----~~~~~~vv~is~--------d~~~~~~~~~~   72 (131)
T cd03009           5 RNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----SGKNFEIVFISW--------DRDEESFNDYF   72 (131)
T ss_pred             ccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh----cCCCEEEEEEEC--------CCCHHHHHHHH
Confidence            3577899999999999999999999999875  789999999973    345799999987        55678999999


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccC
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPF  472 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPF  472 (706)
                      +.+||+.+||++   ....+.+.+.|++.++|+++++|++|+++..||.+|+..||.+||||
T Consensus        73 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          73 SKMPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             HcCCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            999999999964   45667888999999999999999999999999999999999999998

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.76  E-value=2.9e-18  Score=164.53  Aligned_cols=135  Identities=20%  Similarity=0.361  Sum_probs=110.3

Q ss_pred             hcccCCCCCccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcc-cCCCCCeEEEEEecccCCC
Q 005245          320 LIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLS-SRTESQYEVVWLPIVDRST  396 (706)
Q Consensus       320 LI~~k~~~~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~-~~~~~~fEIVwIpiVd~s~  396 (706)
                      ||..++++    ++.+-.+++++.++||.|+|+|.|.||++|..  |.|.++|++++++. .+...+||||.|+.     
T Consensus         3 ~~~~~~~~----~~~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~-----   73 (146)
T cd03008           3 LIKNNSDR----DELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM-----   73 (146)
T ss_pred             eeccCccc----cchhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC-----
Confidence            45544441    34445577889999999999999999988655  78999999997531 11345799999985     


Q ss_pred             CcChhhHHHHHHhhcCCC--ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccc
Q 005245          397 PWTEAKEHKFEALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF  470 (706)
Q Consensus       397 ~w~D~de~~Fe~~~~~MP--WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF  470 (706)
                         |++++.+..+.++|+  |+++|+.+    .....+.+.|++.++|+++++||+|+++..|++..|..+|.+||
T Consensus        74 ---D~~~~~~~~f~~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~  142 (146)
T cd03008          74 ---DQSEQQQESFLKDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF  142 (146)
T ss_pred             ---CCCHHHHHHHHHHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence               566777999999998  99999975    33457788899999999999999999999999999999999987

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.74  E-value=2.6e-17  Score=152.12  Aligned_cols=127  Identities=25%  Similarity=0.383  Sum_probs=110.8

Q ss_pred             ccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH
Q 005245          329 PLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       329 pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F  406 (706)
                      -|.||+  +.|+++.++||.|+|+|.+.||++|..  +.|.++|+++++    ...+++||+|++        |++.+.+
T Consensus         2 ~~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~----~~~~v~vi~Vs~--------d~~~~~~   67 (132)
T cd02964           2 FLLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----EGKNFEIVFVSR--------DRSEESF   67 (132)
T ss_pred             ccccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh----cCCCeEEEEEec--------CCCHHHH
Confidence            356777  799999999999999999999988776  689999999973    225799999986        4556778


Q ss_pred             HHhhcCC-CceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHH-hCcccccC
Q 005245          407 EALQYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWI-WGSVAFPF  472 (706)
Q Consensus       407 e~~~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AFPF  472 (706)
                      +.+..++ +|+.+++.+   ......+.+.|++.++|+.+++|++|+++..|+..++.. ||..||||
T Consensus        68 ~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          68 NEYFSEMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             HHHHhcCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            8888888 899999953   456678999999999999999999999999999999999 99999998

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.47  E-value=3.6e-13  Score=116.69  Aligned_cols=91  Identities=22%  Similarity=0.407  Sum_probs=78.3

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCC--CceeeccC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM--PWFSVHHP  421 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~M--PWyAVpf~  421 (706)
                      ||.++|+|.+.||++|..  +.|.++|++.+     .+.+++||+||+        |++++.++++.+.+  ||+.+|+.
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~-----~~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~   67 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK-----KKDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD   67 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence            899999999999888654  78999999997     267899999997        67788999988888  99999997


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                      +    .....+.+.|++.++|++++|||+|+|
T Consensus        68 ~----~~~~~l~~~~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   68 D----DNNSELLKKYGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             T----HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred             c----chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence            5    457789999999999999999999986

...

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.60  E-value=1.9e-07  Score=86.12  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=78.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.++++.++||.++|+|.+.||++ |  +++.|.++|++++++   ..++++||+|++ |...+ +.+..++|-+-.
T Consensus        10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~---~~~~v~~v~vs~-d~~~d-~~~~~~~~~~~~   84 (142)
T cd02968          10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD---GGDDVQVVFISV-DPERD-TPEVLKAYAKAF   84 (142)
T ss_pred             CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh---hcCceEEEEEEE-CCCCC-CHHHHHHHHHHh
Confidence            466789999999999999999999876 5  557899999999742   115799999987 31000 112233443332


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCC--------------CcEEEEECCCCceec
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK--------------KPILVVLDPQGRVVN  455 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~--------------iP~LVvL~pqGkv~~  455 (706)
                      . .+|..+..++    +..+.+.+.|++..              .|..+|+||+|+++.
T Consensus        85 ~-~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~  138 (142)
T cd02968          85 G-PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR  138 (142)
T ss_pred             C-CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence            2 5788887753    34556667777543              457999999999975

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.60  E-value=2.6e-07  Score=82.30  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CCCceeecceec-CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLR-RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~-gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.+.++.++ ||.|+|+|-+.||++|..  +.|.++|++.+       .++.|+-|+  |       .+.+..+.+.
T Consensus         8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~--~-------~~~~~~~~~~   71 (114)
T cd02967           8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS--D-------GEKAEHQRFL   71 (114)
T ss_pred             CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe--C-------CCHHHHHHHH
Confidence            457789999998 999999999999988765  67888777653       247777553  2       2333444444


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      ..++.-..|+  ..+.    .+.+.|++.++|..+++|++|+++..+
T Consensus        72 ~~~~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          72 KKHGLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             HHhCCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            4333222222  1122    256788999999999999999998654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.56  E-value=7e-07  Score=82.00  Aligned_cols=105  Identities=18%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             CceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc--
Q 005245          336 KRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY--  411 (706)
Q Consensus       336 ~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~--  411 (706)
                      ++.|+++.++||.|+|+|-+.||++|.  ++.|.++|++.++      .+++||.|+.-+.+   .+++.+...++..  
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~------~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~   83 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD------DGLVVIGVHSPEFA---FERDLANVKSAVLRY   83 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc------CCeEEEEeccCccc---cccCHHHHHHHHHHc
Confidence            568999999999999999999997765  4789999999862      46899988641111   1222333333222  


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .++|..+-     |.  ...+.+.|++.+.|..+|+|++|+++..
T Consensus        84 ~~~~p~~~-----D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~  121 (126)
T cd03012          84 GITYPVAN-----DN--DYATWRAYGNQYWPALYLIDPTGNVRHV  121 (126)
T ss_pred             CCCCCEEE-----CC--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence            34443222     22  2344567799999999999999999854

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.55  E-value=4.6e-07  Score=77.89  Aligned_cols=105  Identities=21%  Similarity=0.188  Sum_probs=72.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .+|..++..+++||.++|+|.+.||+.|..  +.|.++++++.      +.++.++.|++ |.   .+.++-+.|-.-+.
T Consensus         7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~---~~~~~~~~~~~~~~   76 (116)
T cd02966           7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD---DDPAAVKAFLKKYG   76 (116)
T ss_pred             CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC---CCHHHHHHHHHHcC
Confidence            456789999999999999999999988866  35777666653      34688888875 21   12333333322222


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       -||.-+.     +.  .+.+.+.|++.+.|.++++||+|+++..
T Consensus        77 -~~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          77 -ITFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             -CCcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence             3333222     22  3567888999999999999999999854

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.40  E-value=1.3e-06  Score=83.46  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=76.8

Q ss_pred             ccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +...+|+.+++++++||.++|+|-+.||+.|..  +.|.+++++++      +.++++|-|+.        |.+.+...+
T Consensus        46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~------~~~~~vi~i~~--------d~~~~~~~~  111 (173)
T PRK03147         46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK------EKGVEIIAVNV--------DETELAVKN  111 (173)
T ss_pred             eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhh------cCCeEEEEEEc--------CCCHHHHHH
Confidence            345678899999999999999999999988775  67999999886      23588998875        333344444


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      +...++   ++|+-..|.  .+.+.+.|++.+.|..+++|++|+++..
T Consensus       112 ~~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        112 FVNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             HHHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            443332   233322221  2455667899999999999999999843

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.35  E-value=3.7e-06  Score=78.42  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=78.0

Q ss_pred             CCCceeecceecCcEEEEEEecC-CCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDL-DVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal-~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.++++.++||.|+|.|-+. |||+|..  +.|.++|++.+      ..++++|.|...+      |....+|-+- 
T Consensus        16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~------~~~v~~v~v~~~~------~~~~~~~~~~-   82 (146)
T PF08534_consen   16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK------DKGVDVVGVSSDD------DPPVREFLKK-   82 (146)
T ss_dssp             TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH------TTTCEEEEEEESS------SHHHHHHHHH-
T ss_pred             CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc------cCceEEEEecccC------CHHHHHHHHh-
Confidence            78999999999999999999999 9998776  67999988876      3459999998733      3335555443 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCC---------CCcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFR---------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~---------~iP~LVvL~pqGkv~~~n  457 (706)
                      ...+|..+--+       -..+.+.|++.         +.|..+++|++|+|+...
T Consensus        83 ~~~~~~~~~D~-------~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   83 YGINFPVLSDP-------DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             TTTTSEEEEET-------TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             hCCCceEEech-------HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            44555553332       23345556887         999999999999998654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.27  E-value=6.5e-06  Score=73.93  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             CCCCceeecceecCcEEEEEEecC-CCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDL-DVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal-~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+++++++|+||.++|+|-+. ||+.|..  +.|.+.|++++.      .+..||.|+. |     +.++.++|-+.
T Consensus        12 ~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~------~~~~vi~is~-d-----~~~~~~~~~~~   79 (124)
T PF00578_consen   12 DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD------KGVQVIGIST-D-----DPEEIKQFLEE   79 (124)
T ss_dssp             TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S-----SHHHHHHHHHH
T ss_pred             CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc------ceEEeeeccc-c-----cccchhhhhhh
Confidence            456789999999999999999888 9888765  579999999973      3699999986 3     13344555444


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                      .. +||-.+.-++       ..+.+.|+..      ..|..+++||+|+++.
T Consensus        80 ~~-~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen   80 YG-LPFPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             HT-CSSEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred             hc-cccccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence            33 3333333221       2345566887      9999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.24  E-value=4.8e-06  Score=94.94  Aligned_cols=108  Identities=11%  Similarity=0.028  Sum_probs=80.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC-hhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT-EAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~-D~de~~Fe~~  409 (706)
                      ..+|+++.++  +||.|+|.|-|.||++|..  +.|.++|++.+      ..+++||-|.+ +   .++ +++.+.|.++
T Consensus        45 D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k------~~~v~VI~Vs~-~---~~~~e~~~~~~~~~  112 (521)
T PRK14018         45 DNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK------FSSANLITVAS-P---GFLHEKKDGDFQKW  112 (521)
T ss_pred             cCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEec-c---cccccccHHHHHHH
Confidence            4456677776  9999999999999988766  78999999875      34588888864 2   222 4456788888


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+.+.|..+|.-  +|.  -..+.+.|+++++|++++||++|+++..
T Consensus       113 ~~~~~y~~~pV~--~D~--~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        113 YAGLDYPKLPVL--TDN--GGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             HHhCCCccccee--ccc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            877776544442  133  2346678899999999999999999854

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.17  E-value=2e-05  Score=76.62  Aligned_cols=105  Identities=13%  Similarity=0.151  Sum_probs=74.6

Q ss_pred             CCCceeecceecCcEEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .++..+++++++||.|+|+|- +.||+.  .+++.|.+.|+++++      .++.||.|+. |.     ....+.|.+..
T Consensus        17 ~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d~-----~~~~~~~~~~~   84 (173)
T cd03015          17 GEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-DS-----HFSHLAWRNTP   84 (173)
T ss_pred             CCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-CC-----HHHHHHHHHhh
Confidence            344789999999999999887 788755  456789999999973      4699999975 31     23344565543


Q ss_pred             ------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceeccc
Q 005245          411 ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n  457 (706)
                            ...||-.+.-++   .+..    +.|++.      .+|..+|||++|+++..+
T Consensus        85 ~~~~~~~~~~f~~l~D~~---~~~~----~~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          85 RKEGGLGKINFPLLADPK---KKIS----RDYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             hhhCCccCcceeEEECCc---hhHH----HHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence                  356776655432   2333    345664      578999999999998776

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.15  E-value=1.3e-05  Score=73.11  Aligned_cols=99  Identities=14%  Similarity=0.061  Sum_probs=67.3

Q ss_pred             ceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCC
Q 005245          337 RKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMP  414 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MP  414 (706)
                      ..++.++++||.|+|+|-+.||++|..  +.|.+++++         .+++||-|+.-|     +.++-++|-.. ...|
T Consensus        16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~---------~~~~vv~v~~~~-----~~~~~~~~~~~-~~~~   80 (127)
T cd03010          16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQ---------GRVPIYGINYKD-----NPENALAWLAR-HGNP   80 (127)
T ss_pred             ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHh---------cCcEEEEEECCC-----CHHHHHHHHHh-cCCC
Confidence            578889999999999999999988775  445544322         138888887522     12223333222 3347


Q ss_pred             ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          415 WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       415 WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      |..+-...      ...+...|++.++|..++||++|+++..
T Consensus        81 ~~~~~~D~------~~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          81 YAAVGFDP------DGRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             CceEEECC------cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence            76554422      2346667899999999999999998844

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.15  E-value=1.8e-05  Score=78.64  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=71.1

Q ss_pred             CccccC--CCCceeec--ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChh
Q 005245          328 LPLVEC--PTKRKVSI--DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEA  401 (706)
Q Consensus       328 ~pl~dg--~~~~kV~I--s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~  401 (706)
                      .|-|..  .+|+.+.+  ..++||.|.|+|.+.|||+|..  +.+.++|++.         ++.+++|+. |     +++
T Consensus        52 aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~-----~~~  116 (189)
T TIGR02661        52 APIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G-----TPA  116 (189)
T ss_pred             CCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----CHH
Confidence            344443  35788999  4589999999999999988765  6787776432         377899972 2     244


Q ss_pred             hHHHHH-HhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          402 KEHKFE-ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       402 de~~Fe-~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      +.++|- ++.-+.|.|.  .    +    ..+.+.|++.++|..+++|++|++..
T Consensus       117 ~~~~~~~~~~~~~~~~~--~----~----~~i~~~y~v~~~P~~~lID~~G~I~~  161 (189)
T TIGR02661       117 EHRRFLKDHELGGERYV--V----S----AEIGMAFQVGKIPYGVLLDQDGKIRA  161 (189)
T ss_pred             HHHHHHHhcCCCcceee--c----h----hHHHHhccCCccceEEEECCCCeEEE
Confidence            445554 3323344443  1    1    23456789999999999999999986

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PLN02412 probable glutathione peroxidase

Probab=98.14  E-value=2e-05  Score=76.79  Aligned_cols=118  Identities=14%  Similarity=0.225  Sum_probs=81.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCC-C-CcCh-hhHHHH-
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-T-PWTE-AKEHKF-  406 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s-~-~w~D-~de~~F-  406 (706)
                      ..+|++|.++.++||.|+|+|-+.||++|.  .+.|.++|++.+.      .+++||=||.-+.. . +-+. +-.+.| 
T Consensus        16 d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~------~g~~vvgv~~~~~~~~~~~~~~~~~~~~~   89 (167)
T PLN02412         16 DIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE------QGFEILAFPCNQFLGQEPGSNEEIQQTVC   89 (167)
T ss_pred             CCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh------CCcEEEEecccccccCCCCCHHHHHHHHH
Confidence            457789999999999999999999988875  5889999999973      35999999862100 0 0122 224455 


Q ss_pred             HHhhcCCCceee--ccCCCCCHHHHHHHHHhh----C--CCCCcEEEEECCCCceeccc
Q 005245          407 EALQYMMPWFSV--HHPSAIDPAVIRYAKEKW----D--FRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       407 e~~~~~MPWyAV--pf~~~id~~~~r~ike~~----~--~~~iP~LVvL~pqGkv~~~n  457 (706)
                      +.+.-+.|+++-  +-... .....++++..-    .  +...|+-.++|++|+++..-
T Consensus        90 ~~~~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         90 TRFKAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             HccCCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            555667788752  22111 234456665431    2  56679999999999999764

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.11  E-value=4.8e-05  Score=75.11  Aligned_cols=117  Identities=16%  Similarity=0.325  Sum_probs=74.8

Q ss_pred             CCCCceeecceecCcEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe  407 (706)
                      ..+|+.|++++++||.| ++++-+.||++|.  .+.|.++|++.+.      .+++||-||.-+  ...+++.++-.+|-
T Consensus        27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~------~gv~vv~vs~~~~~~~~~~~~~~~~~f~  100 (183)
T PTZ00256         27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS------QGLEILAFPCNQFMEQEPWDEPEIKEYV  100 (183)
T ss_pred             cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh------CCcEEEEEecccccccCCCCHHHHHHHH
Confidence            45788999999999965 4555799988765  5789999999963      359999998521  11123334444552


Q ss_pred             --HhhcCCCceee--ccCCCCCHHHHHHHHHhh--------CCCCCcE---EEEECCCCceecc
Q 005245          408 --ALQYMMPWFSV--HHPSAIDPAVIRYAKEKW--------DFRKKPI---LVVLDPQGRVVNQ  456 (706)
Q Consensus       408 --~~~~~MPWyAV--pf~~~id~~~~r~ike~~--------~~~~iP~---LVvL~pqGkv~~~  456 (706)
                        .+.-+.|=++-  +-.. ...+..+++++..        .+.++|.   .+++|++|+++..
T Consensus       101 ~~~~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~  163 (183)
T PTZ00256        101 QKKFNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY  163 (183)
T ss_pred             HHhcCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence              22222232210  1111 1134667777765        4668995   6999999999864

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.08  E-value=1.5e-05  Score=76.86  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=75.7

Q ss_pred             CCCCceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|..|+++.+ +||.|+|+|=+.|||.|..  +.|.++|++.+      +.++++|-|++-+....+. ++.+....+
T Consensus        11 ~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~------~~~v~~v~is~d~~~~~~~-d~~~~~~~~   83 (171)
T cd02969          11 DTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYG------AKGVAVVAINSNDIEAYPE-DSPENMKAK   83 (171)
T ss_pred             CCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHh------hCCeEEEEEecCccccccc-cCHHHHHHH
Confidence            345678999998 9999999999999988644  67999998885      2469999998622111111 133344443


Q ss_pred             hc--CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          410 QY--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~--~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+  ..||-.+     .|..  +.+.+.|++.+.|..+++||+|+++-.
T Consensus        84 ~~~~~~~~~~l-----~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969          84 AKEHGYPFPYL-----LDET--QEVAKAYGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             HHHCCCCceEE-----ECCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence            32  3443322     2322  356678899999999999999999854

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.06  E-value=1.6e-05  Score=73.13  Aligned_cols=102  Identities=22%  Similarity=0.295  Sum_probs=72.8

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      +|+.+++++++||.++|+|- +.|||.|  +++.|.+.|++++.      .+++||.|+. |     +.+.-.+|-+.+ 
T Consensus        12 ~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~------~~~~vv~is~-d-----~~~~~~~~~~~~-   78 (140)
T cd03017          12 DGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA------LGAVVIGVSP-D-----SVESHAKFAEKY-   78 (140)
T ss_pred             CCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHHh-
Confidence            57789999999999999987 5676554  55789999999862      4589999975 3     233444554432 


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCC---------cEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKK---------PILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~i---------P~LVvL~pqGkv~~~  456 (706)
                      .++|..+-     |..  +.+.+.|++...         |..+++|++|+++..
T Consensus        79 ~~~~~~l~-----D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~  125 (140)
T cd03017          79 GLPFPLLS-----DPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV  125 (140)
T ss_pred             CCCceEEE-----CCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence            35554442     222  346677898887         999999999999854

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.05  E-value=2.1e-05  Score=72.23  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=75.1

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.+|+.+++++++||.++|+|- +.||+.|  +++.|.++|++++.      .+++||.|+. |     +....+.|-+-
T Consensus         9 ~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~-d-----~~~~~~~~~~~   76 (140)
T cd02971           9 ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV-D-----SPFSHKAWAEK   76 (140)
T ss_pred             cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHhc
Confidence            3467899999999998888877 7887654  45789999999962      3599999985 3     13334555544


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------EEEEECCCCceeccc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~n  457 (706)
                      ....+|-.+-     |..  ..+.+.|++...|         ..+++|++|+++...
T Consensus        77 ~~~~~~~~l~-----D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~  126 (140)
T cd02971          77 EGGLNFPLLS-----DPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE  126 (140)
T ss_pred             ccCCCceEEE-----CCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence            4355665543     222  2566778887665         799999999998653

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.04  E-value=5.9e-05  Score=71.77  Aligned_cols=113  Identities=20%  Similarity=0.321  Sum_probs=72.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec--ccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI--VDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi--Vd~s~~w~D~de~~Fe~~  409 (706)
                      .+|+.+++++++||.|+|+|-+.||++|..  +.|.++|++.+.      .+++||-||.  +..+.+=+.++...|-+-
T Consensus        10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~------~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~   83 (153)
T TIGR02540        10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP------SHFNVLAFPCNQFGESEPDSSKEIESFARR   83 (153)
T ss_pred             CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh------CCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence            467789999999999999999999988644  789999999963      3699999985  211100012334455432


Q ss_pred             hcCCCceeec-----cCCCCCHHHHHHHHHhhCCCCCcE----EEEECCCCceecc
Q 005245          410 QYMMPWFSVH-----HPSAIDPAVIRYAKEKWDFRKKPI----LVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVp-----f~~~id~~~~r~ike~~~~~~iP~----LVvL~pqGkv~~~  456 (706)
                      ....++..+.     -++  -....+++.+  +..+.|.    ..++|++|+++..
T Consensus        84 ~~~~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~  135 (153)
T TIGR02540        84 NYGVTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF  135 (153)
T ss_pred             hcCCCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence            1233332221     111  1223455543  3456897    9999999999863

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.04  E-value=2.3e-06  Score=83.78  Aligned_cols=47  Identities=21%  Similarity=0.466  Sum_probs=40.8

Q ss_pred             cCceEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeEEEeccCCchhhh
Q 005245          504 MEQKHICLYGGEDLEWV---RKFTALMGAVARAA---GIALEMLYVGKSNPKEKA  552 (706)
Q Consensus       504 ~egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~---~~~~E~v~Vgkdn~~e~v  552 (706)
                      .+||.|+||||+  +||   |+||+.+.+++++.   +.+||+||||+|+..+..
T Consensus        31 l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~   83 (157)
T KOG2501|consen   31 LQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL   83 (157)
T ss_pred             hCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence            499999999999  886   99999999998863   557999999999876663

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.99  E-value=5.7e-05  Score=78.49  Aligned_cols=118  Identities=14%  Similarity=0.230  Sum_probs=75.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCC-CC-cChhhHHHHH-
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-TP-WTEAKEHKFE-  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s-~~-w~D~de~~Fe-  407 (706)
                      ..+|+.|.+++++||.|+|.|-+.||++|  +.+.|.++|++.+.      .+++||-|++-+.. .+ =+.++..+|- 
T Consensus        86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~------~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~  159 (236)
T PLN02399         86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT------QGFEILAFPCNQFGGQEPGSNPEIKQFAC  159 (236)
T ss_pred             CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc------CCcEEEEEecccccccCCCCHHHHHHHHH
Confidence            35678999999999999999999999987  55889999999863      35999999862110 00 0123445552 


Q ss_pred             -HhhcCCCceeeccCC-CCCHHHHHHHHHhhC------CCCCcEEEEECCCCceecc
Q 005245          408 -ALQYMMPWFSVHHPS-AIDPAVIRYAKEKWD------FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 -~~~~~MPWyAVpf~~-~id~~~~r~ike~~~------~~~iP~LVvL~pqGkv~~~  456 (706)
                       .+....|-++=.-.. ..-.+..++++..+.      ++..|.-+++|++|+++..
T Consensus       160 ~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~  216 (236)
T PLN02399        160 TRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER  216 (236)
T ss_pred             HhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence             333334432100000 001123455544332      3567999999999999974

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=97.98  E-value=2.1e-05  Score=70.94  Aligned_cols=96  Identities=18%  Similarity=0.331  Sum_probs=66.4

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      +|+.+..+.++||.++|+|-+.||++|..  +.|..+|++           ++++-|+. |+.   +.+..++|-+-+ .
T Consensus         9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~-~~~---~~~~~~~~~~~~-~   72 (123)
T cd03011           9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVAL-RSG---DDGAVARFMQKK-G   72 (123)
T ss_pred             CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEc-cCC---CHHHHHHHHHHc-C
Confidence            45789999999999999999999998775  567777654           56777765 210   123334444332 2


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                      +||-.+.-+     .  ..+.+.|++.+.|.++++|++| +.
T Consensus        73 ~~~~~~~d~-----~--~~~~~~~~i~~~P~~~vid~~g-i~  106 (123)
T cd03011          73 YGFPVINDP-----D--GVISARWGVSVTPAIVIVDPGG-IV  106 (123)
T ss_pred             CCccEEECC-----C--cHHHHhCCCCcccEEEEEcCCC-eE
Confidence            555444322     1  3466678999999999999999 44

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.95  E-value=3.4e-05  Score=76.19  Aligned_cols=100  Identities=18%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             Cceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          336 KRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       336 ~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      |+.+..+.+ +||.|+|+|-+.||++|..  +.|.++++          .+++||-|+.-|     +.++..+|-.- ..
T Consensus        57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~~~-----~~~~~~~~~~~-~~  120 (185)
T PRK15412         57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLKE-LG  120 (185)
T ss_pred             CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEECCC-----CHHHHHHHHHH-cC
Confidence            345666666 7999999999999999765  56655432          258999987511     12223344322 24


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      +||..+.+..    .  ..+.+.|++.++|..+++|++|+++...
T Consensus       121 ~~~~~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~~  159 (185)
T PRK15412        121 NPYALSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYRH  159 (185)
T ss_pred             CCCceEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence            5766544422    1  2244678999999999999999988543

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.91  E-value=5.7e-05  Score=70.42  Aligned_cols=106  Identities=12%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             CCCCceeecceecC-cEEEEEE-ecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRR-KSVLLLV-SDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~g-K~VlL~f-Sal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.+++++++| |.+.|+| .+.||+.|-.  +.|.++|++++.      .++.+|.|+. |     +.+..++|-.
T Consensus        14 ~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~v~vi~vs~-d-----~~~~~~~~~~   81 (149)
T cd03018          14 DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA------AGAEVLGISV-D-----SPFSLRAWAE   81 (149)
T ss_pred             CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh------CCCEEEEecC-C-----CHHHHHHHHH
Confidence            34688999999999 8777666 5899877754  679999999962      3588999974 3     1334455543


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCC----CC--cEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----KK--PILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~i--P~LVvL~pqGkv~~~  456 (706)
                      -+ ..+|..+-     |....+.+.+.|++.    ++  |..+++|++|+++-.
T Consensus        82 ~~-~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~  129 (149)
T cd03018          82 EN-GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA  129 (149)
T ss_pred             hc-CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence            32 34554332     222124455567776    33  389999999998865

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.91  E-value=0.00013  Score=89.65  Aligned_cols=105  Identities=18%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             CCceeec-ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH---HHHH
Q 005245          335 TKRKVSI-DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH---KFEA  408 (706)
Q Consensus       335 ~~~kV~I-s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~---~Fe~  408 (706)
                      ++..+.+ ++++||.|+|.|.|.||++|..  |.|.++|++.+      +.+|+||-|+..+-   -.+++.+   .|- 
T Consensus       408 ~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~------~~~~~vvgV~~~~~---D~~~~~~~~~~~~-  477 (1057)
T PLN02919        408 NTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK------DQPFTVVGVHSAKF---DNEKDLEAIRNAV-  477 (1057)
T ss_pred             CCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC------CCCeEEEEEecccc---cccccHHHHHHHH-
Confidence            3567776 5899999999999999998765  78999999885      34599999975321   0122222   332 


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ....++|..+.-..   .    .+-+.|+++++|+++++|++|+++..
T Consensus       478 ~~~~i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        478 LRYNISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             HHhCCCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEEE
Confidence            24567776554321   2    34467899999999999999999743

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.91  E-value=1.6e-05  Score=75.62  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCC--CC-cChhhHHHHHH
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRS--TP-WTEAKEHKFEA  408 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s--~~-w~D~de~~Fe~  408 (706)
                      .+|+.++++.++||.|+|+|=+.||+ |..  +.|+++|++.+.      .+++||-|++ |..  .+ =+.++-++|-.
T Consensus        10 ~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~------~~~~vv~v~~-~~~~~~~~~~~~~~~~f~~   81 (152)
T cd00340          10 IDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD------RGLVVLGFPC-NQFGGQEPGSNEEIKEFCE   81 (152)
T ss_pred             CCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC------CCEEEEEecc-CccccCCCCCHHHHHHHHH
Confidence            46789999999999999999999976 544  789999999862      3589998875 110  00 01233455643


Q ss_pred             --hhcCCCceeec--cCCCCCHHHHHHHHHhh------CCCCCcEEEEECCCCceecc
Q 005245          409 --LQYMMPWFSVH--HPSAIDPAVIRYAKEKW------DFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 --~~~~MPWyAVp--f~~~id~~~~r~ike~~------~~~~iP~LVvL~pqGkv~~~  456 (706)
                        +.-+.|.++-+  ..... ....+++....      ..+..|+.+++|++|+++..
T Consensus        82 ~~~~~~fp~~~d~d~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~  138 (152)
T cd00340          82 TNYGVTFPMFAKIDVNGENA-HPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR  138 (152)
T ss_pred             HhcCCCceeeeeEeccCCCC-ChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence              22234544321  11100 11222211111      12223389999999999864

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.87  E-value=4.7e-05  Score=72.06  Aligned_cols=104  Identities=13%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.+|..+++++++||.++|+|=+.| ||.|  +++.|.+.|+++++      .++++|-|++ |     +.+.-.+|-+-
T Consensus        17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~~~~~~~~~~~   84 (154)
T PRK09437         17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----KPEKLSRFAEK   84 (154)
T ss_pred             CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHH
Confidence            3567789999999999999998765 4334  55789999999973      3588988875 2     34444455433


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCCC------------cEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKK------------PILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~i------------P~LVvL~pqGkv~~~  456 (706)
                      . ..||-.+.-+     .  +.+.+.|++...            |..++|||+|+++..
T Consensus        85 ~-~~~~~~l~D~-----~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         85 E-LLNFTLLSDE-----D--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             h-CCCCeEEECC-----C--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            3 4566554322     1  234455676543            678999999999864

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.87  E-value=0.00014  Score=73.19  Aligned_cols=114  Identities=11%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccC-CCCc-ChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR-STPW-TEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~-s~~w-~D~de~~Fe~~  409 (706)
                      .+|+.|.++.++||.|+|.|=+.||++|  +.+.|.++|++.+      +.+++||-||+-+. ..+. +.++-++|-. 
T Consensus        27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~------~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-   99 (199)
T PTZ00056         27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFN------PLGLEILAFPTSQFLNQEFPNTKDIRKFND-   99 (199)
T ss_pred             CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHh------cCceEEEEecchhccCCCCCCHHHHHHHHH-
Confidence            4578999999999999999999998876  5688999999996      34599999986210 0011 1233445543 


Q ss_pred             hcCCCceeec-----cCCCCCHHHHHHHHH----hhCCCCC-------cEEEEECCCCceecc
Q 005245          410 QYMMPWFSVH-----HPSAIDPAVIRYAKE----KWDFRKK-------PILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVp-----f~~~id~~~~r~ike----~~~~~~i-------P~LVvL~pqGkv~~~  456 (706)
                      ...++|..+-     -+.  ..++.+++++    .++..+.       |.-+++|++|+++..
T Consensus       100 ~~~~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~  160 (199)
T PTZ00056        100 KNKIKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY  160 (199)
T ss_pred             HcCCCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence            2345554321     011  2345666653    2333322       378999999999953

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.80  E-value=0.0001  Score=71.82  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=63.9

Q ss_pred             eeeccee-cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245          338 KVSIDVL-RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF  416 (706)
Q Consensus       338 kV~Is~L-~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy  416 (706)
                      .+..+.+ +||.|+|+|.+.||++|...  ...++++.+      .+++||.|+.-+     +.++..+|-+- ..+||.
T Consensus        54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~--~p~l~~l~~------~~~~vi~V~~~~-----~~~~~~~~~~~-~~~~f~  119 (173)
T TIGR00385        54 AYTPEAFIQGKPVLLNVWASWCPPCRAE--HPYLNELAK------DGLPIVGVDYKD-----QSQNALKFLKE-LGNPYQ  119 (173)
T ss_pred             ccCHHHhcCCCEEEEEEECCcCHHHHHH--HHHHHHHHH------cCCEEEEEECCC-----ChHHHHHHHHH-cCCCCc
Confidence            4555565 79999999999999998752  223344432      248999997511     12222344322 246776


Q ss_pred             eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+.+..    .  ..+.+.|++.+.|..+++|++|+++..
T Consensus       120 ~v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~  153 (173)
T TIGR00385       120 AILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR  153 (173)
T ss_pred             eEEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence            554422    1  234556899999999999999998854

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR03137 AhpC peroxiredoxin

Probab=97.77  E-value=0.00011  Score=72.85  Aligned_cols=101  Identities=16%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             eeecceecCcEEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh---c
Q 005245          338 KVSIDVLRRKSVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ---Y  411 (706)
Q Consensus       338 kV~Is~L~gK~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~---~  411 (706)
                      .++.++++||.|+|+|= +.||+.  .+++.|.+.|+++++      .+++||.||. |+     ....+.|....   .
T Consensus        23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D~-----~~~~~~~~~~~~~~~   90 (187)
T TIGR03137        23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-DT-----HFVHKAWHDTSEAIG   90 (187)
T ss_pred             EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-CC-----HHHHHHHHhhhhhcc
Confidence            57888999999999998 888655  455789999999973      3689999985 31     23345554322   2


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceeccc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n  457 (706)
                      .+|+..     +.|.  ...+.+.|++.      ..|..+++|++|++....
T Consensus        91 ~l~fpl-----lsD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        91 KITYPM-----LGDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             CcceeE-----EECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            444322     2232  24555666775      359999999999998654

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.76  E-value=0.00014  Score=72.83  Aligned_cols=106  Identities=14%  Similarity=0.081  Sum_probs=74.7

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCC--hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVLRRKSVLLLVS-DLDVS--NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fS-al~~~--~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      ....+.+++++||.|.|+|= +.||+  +.|++.|.+.|++++.      .+++||-||. |+     -...+.|-+-..
T Consensus        20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~------~g~~vigIS~-D~-----~~~~~a~~~~~~   87 (187)
T PRK10382         20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK------LGVDVYSVST-DT-----HFTHKAWHSSSE   87 (187)
T ss_pred             cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh------CCCEEEEEeC-CC-----HHHHHHHHHhhc
Confidence            45688889999999988887 88854  4566789999999963      4599999985 42     334566754332


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCC----CCC--cEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDF----RKK--PILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~----~~i--P~LVvL~pqGkv~~~  456 (706)
                      .+  ..+|||=+.|.  -+.+.+.|++    .+.  |..+|+||+|++...
T Consensus        88 ~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~  134 (187)
T PRK10382         88 TI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  134 (187)
T ss_pred             cc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence            22  34555533332  4566777787    466  999999999998654

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.73  E-value=0.00022  Score=71.35  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             CCCceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-h
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-L  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~  409 (706)
                      .+++.+.+++++||.|+|+|-..+   +|+.++..|.+.|+++++      .+++||.|+. |+     ......+.. .
T Consensus        24 ~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d~-----~~~~~~~~~~~   91 (199)
T PTZ00253         24 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-DS-----EYAHLQWTLQE   91 (199)
T ss_pred             CCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-CC-----HHHHHHHHhCh
Confidence            355789999999999999998643   455566789999999973      4699999986 32     222223221 1


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC----C--CcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----K--KPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~--iP~LVvL~pqGkv~~  455 (706)
                      +...-.-.++||-..|.  .+.+.+.|++.    +  .|..++|||+|++..
T Consensus        92 ~~~~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~  141 (199)
T PTZ00253         92 RKKGGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ  141 (199)
T ss_pred             HhhCCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence            11100112344433333  34555667764    3  589999999999876

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=97.65  E-value=0.00022  Score=66.40  Aligned_cols=104  Identities=13%  Similarity=0.033  Sum_probs=67.0

Q ss_pred             CCCceeecceecCcEEEEEEecCC-CCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLD-VSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~-~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|..+++++++||.|.|+|=+.| |++  .+++.|.+.|++.+        +++||-|+. |     +....++|.+- 
T Consensus        14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~~~~~~~~~~~-   78 (143)
T cd03014          14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----LPFAQKRWCGA-   78 (143)
T ss_pred             CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----CHHHHHHHHHh-
Confidence            456789999999999999999988 444  45577988888752        488888874 3     13334455443 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~n  457 (706)
                        +....+|.-+  |.. .+.+.+.|++..      .|...++|++|+++...
T Consensus        79 --~~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          79 --EGVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             --cCCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence              3221122211  211 133444556643      68999999999998654

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.64  E-value=0.00026  Score=65.45  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=65.4

Q ss_pred             CCCceeecceec-Cc-EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLR-RK-SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~-gK-~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      .+|+.++++++. +| .|++||-+.||+.|..  +.|.+.|++++.      .+++||-|+. |     +.+....|-+-
T Consensus        10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~-~-----~~~~~~~~~~~   77 (149)
T cd02970          10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGP-E-----SPEKLEAFDKG   77 (149)
T ss_pred             CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeC-C-----CHHHHHHHHHh
Confidence            457789998875 34 5566667999888655  679999999962      4589999874 2     12222234321


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC-----------------------------CCcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-----------------------------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~-----------------------------~iP~LVvL~pqGkv~~  455 (706)
                       ...||..     ..|..  +.+-+.|++.                             ..|..+|+|++|++.-
T Consensus        78 -~~~~~p~-----~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~  144 (149)
T cd02970          78 -KFLPFPV-----YADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF  144 (149)
T ss_pred             -cCCCCeE-----EECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence             1223322     22332  3344556763                             7999999999999874

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.53  E-value=0.00037  Score=70.21  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             eeecceecCcEEEE-EEecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH----HHhh
Q 005245          338 KVSIDVLRRKSVLL-LVSDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF----EALQ  410 (706)
Q Consensus       338 kV~Is~L~gK~VlL-~fSal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F----e~~~  410 (706)
                      .+++++++||.|.| +|-+.||+.|  |+..|.+.|+++++      .+++||-||+ |+     ......|    .+-.
T Consensus        19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D~-----~~~~~~w~~~~~~~~   86 (202)
T PRK13190         19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-DS-----IYSHIAWLRDIEERF   86 (202)
T ss_pred             cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-CC-----HHHHHHHHHhHHHhc
Confidence            68999999998777 5788896554  55789999999973      3599999986 31     2222222    2222


Q ss_pred             c-CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          411 Y-MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~-~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                      . .+||..+-     |..  +.+.+.|++.      ..|..+++||+|++...
T Consensus        87 g~~~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~  132 (202)
T PRK13190         87 GIKIPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM  132 (202)
T ss_pred             CCCceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence            2 23433332     332  3455667874      48999999999998743

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=97.53  E-value=0.00053  Score=67.56  Aligned_cols=110  Identities=16%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCC---hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh--hhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVS---NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~---~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D--~de~~Fe  407 (706)
                      ..+|+.|..++++||.++++|--..||   |-.+..|.++.+++.+    .+.++++|+|++ |   |..|  +.-++|-
T Consensus        39 d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~----~~~~v~~v~ISv-D---P~~DTp~~L~~Y~  110 (174)
T PF02630_consen   39 DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE----EGKDVQFVFISV-D---PERDTPEVLKKYA  110 (174)
T ss_dssp             ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH----TTTTEEEEEEES-S---TTTC-HHHHHHHH
T ss_pred             cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh----ccCceEEEEEEe-C---CCCCCHHHHHHHH
Confidence            357889999999999999999777664   4455689999999985    366899999997 5   3444  3456666


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCCC----------------CCcEEEEECCCCceec
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----------------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----------------~iP~LVvL~pqGkv~~  455 (706)
                      ..+. -.|..+-+    +.+.++.+.+.|++.                .-..+.++||+|++..
T Consensus       111 ~~~~-~~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~  169 (174)
T PF02630_consen  111 KKFG-PDFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA  169 (174)
T ss_dssp             HCHT-TTCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred             HhcC-CCcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence            6554 35666665    245566666666642                2347889999999874

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.50  E-value=0.00041  Score=66.18  Aligned_cols=73  Identities=16%  Similarity=0.135  Sum_probs=54.4

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -+||.|+|+|.+.||++|..  +.|.+++++.+       ..+.++.|-+        |.+  .+               
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~v--------d~~--~~---------------   65 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNV--------DNP--KW---------------   65 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEc--------CCc--cc---------------
Confidence            36899999999999999875  57888777663       3477888754        211  11               


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                              ..+.+.|+++++|++++++++|+++..
T Consensus        66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~   92 (142)
T cd02950          66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQ   92 (142)
T ss_pred             --------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence                    013467899999999999999998854

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.45  E-value=0.00054  Score=66.75  Aligned_cols=114  Identities=15%  Similarity=0.074  Sum_probs=74.6

Q ss_pred             CCCCcccc--CCCCceeecceecCcEEEEEEecCC-CCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC
Q 005245          325 DDQLPLVE--CPTKRKVSIDVLRRKSVLLLVSDLD-VSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT  399 (706)
Q Consensus       325 ~~~~pl~d--g~~~~kV~Is~L~gK~VlL~fSal~-~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~  399 (706)
                      ++..|-|.  ..+|+.|++++++||.|.|+|=+.| |++  .+++.|.+.|++++        +++||=|+. |     +
T Consensus        21 G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~-D-----~   86 (167)
T PRK00522         21 GDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISA-D-----L   86 (167)
T ss_pred             CCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeC-C-----C
Confidence            34445443  2457789999999999999999988 644  55577888887762        588998875 3     1


Q ss_pred             hhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------EEEEECCCCceecccH
Q 005245          400 EAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQNA  458 (706)
Q Consensus       400 D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~nA  458 (706)
                      ....++|-+-. ..+-    ++-+.|.. -+.+.+.|++.+.|         ...++|++|+++....
T Consensus        87 ~~~~~~f~~~~-~~~~----~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~  148 (167)
T PRK00522         87 PFAQKRFCGAE-GLEN----VITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL  148 (167)
T ss_pred             HHHHHHHHHhC-CCCC----ceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence            33456676543 2331    11111211 22445567887777         9999999999986653

>TIGR02740 TraF-like TraF-like protein

Probab=97.31  E-value=0.00025  Score=74.90  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      .++...++.|+||.++++|.+.||++|..  +.|.+++++-         .++|+.|++ |       .+..      ..
T Consensus       155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D-------~~~~------~~  211 (271)
T TIGR02740       155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-D-------GGPL------PG  211 (271)
T ss_pred             HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-C-------CCcc------cc
Confidence            34457889999999999999999988875  6777776664         289999986 3       2111      11


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccH
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA  458 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA  458 (706)
                      +|-+   -.   +    +-+.+.|+++++|++++++++|+.+..-+
T Consensus       212 fp~~---~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v~  247 (271)
T TIGR02740       212 FPNA---RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPIG  247 (271)
T ss_pred             CCcc---cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEEE
Confidence            2221   11   1    22467889999999999999765554433

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.28  E-value=0.0007  Score=68.02  Aligned_cols=94  Identities=12%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             CCccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH
Q 005245          327 QLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH  404 (706)
Q Consensus       327 ~~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~  404 (706)
                      .+|-|.=.+|+.+.++.++    +++|-+.|||+|..  +.|+++|++.+         |+|+-|++ |       .+. 
T Consensus        54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~-D-------~~~-  111 (181)
T PRK13728         54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTL-D-------GQG-  111 (181)
T ss_pred             CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEe-C-------CCC-
Confidence            4666776788999999998    66788999987655  78999988862         89999986 3       111 


Q ss_pred             HHHHhhcCCCceeeccCCCCC-HHHHHHHHHhhCC--CCCcEEEEECCCCceecc
Q 005245          405 KFEALQYMMPWFSVHHPSAID-PAVIRYAKEKWDF--RKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       405 ~Fe~~~~~MPWyAVpf~~~id-~~~~r~ike~~~~--~~iP~LVvL~pqGkv~~~  456 (706)
                                  .+.||-.++ ..  ..+.+.|+.  .++|+.+++|++|+++-+
T Consensus       112 ------------~~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~  152 (181)
T PRK13728        112 ------------DTAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALP  152 (181)
T ss_pred             ------------CCCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence                        035555442 22  345667784  699999999999998643

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.27  E-value=0.00082  Score=59.83  Aligned_cols=92  Identities=13%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             cCcEEEEEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||+++++|++.||+.|...  .+.+.- ++...   ..++|.++.+.+      +.+.+ ..+.-+...   .. +++ 
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~------~~~~~-~~~~~~~~~---~~-~~~-   67 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDN-DVARY---LKDDFQVIFVNI------DDSRD-ESEAVLDFD---GQ-KNV-   67 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHH-HHHCE---EHCECEEEECES------HSHHH-HHHHHHSHT---CH-SSC-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHH-HHHHH---hhcCeEEEEEec------CCccc-ccccccccc---cc-hhh-
Confidence            58999999999999999863  233332 33311   234688888877      22222 222211100   00 111 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                         ....+.+.+.|++.+-|++|++|++|+++.
T Consensus        68 ---~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~   97 (112)
T PF13098_consen   68 ---RLSNKELAQRYGVNGTPTIVFLDKDGKIVY   97 (112)
T ss_dssp             ---HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred             ---hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence               234557889999999999999999999763

...

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.20  E-value=0.0014  Score=69.23  Aligned_cols=155  Identities=14%  Similarity=0.090  Sum_probs=88.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhccchhHHHHHhhhcccCCCCCccccCC-----CCceeeccee-cCcEEEEEEe-cC
Q 005245          284 LCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECP-----TKRKVSIDVL-RRKSVLLLVS-DL  356 (706)
Q Consensus       284 ~c~~~I~~~~~~e~y~~l~~lf~~~~~D~~~vL~k~LI~~k~~~~pl~dg~-----~~~kV~Is~L-~gK~VlL~fS-al  356 (706)
                      .|.+-.++.... ..++-.+.|-+. -+.|.--...+   .++..|-|...     .+..++++++ +||.|.|||= +.
T Consensus        35 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~---vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~  109 (261)
T PTZ00137         35 NCFKSVDRISSL-KSVNGVRNYSTS-EGLCNTVTSSL---VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLD  109 (261)
T ss_pred             hhccchhhHHHH-HHHHHHHhccCC-ccccccccccc---CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCC
Confidence            466555552111 123455566554 23333220222   33444544421     2346899997 8987777776 77


Q ss_pred             CCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh-hcCCCceeeccCCCCCHHHHHHHH
Q 005245          357 DVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL-QYMMPWFSVHHPSAIDPAVIRYAK  433 (706)
Q Consensus       357 ~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~-~~~MPWyAVpf~~~id~~~~r~ik  433 (706)
                      ||+.  .|++.|.+.|+++++      .++|||=||+ |+     -...+.|.+. ...+--.-++||=+.|..  +.+.
T Consensus       110 ftpvCt~El~~l~~~~~ef~~------~gv~VigIS~-Ds-----~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~ia  175 (261)
T PTZ00137        110 FTFVCPSELLGFSERLKEFEE------RGVKVLGVSV-DS-----PFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVS  175 (261)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-CC-----HHHHHHHHhhhhhhccccCcceEEEEcCC--hHHH
Confidence            8554  566789999999973      4599999986 31     2234556542 222112222332222322  4566


Q ss_pred             HhhCCC-----CCcEEEEECCCCceeccc
Q 005245          434 EKWDFR-----KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       434 e~~~~~-----~iP~LVvL~pqGkv~~~n  457 (706)
                      +.|++.     ..|...++||+|++....
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~  204 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVA  204 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence            677774     489999999999988643

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.20  E-value=0.0018  Score=61.06  Aligned_cols=79  Identities=15%  Similarity=0.123  Sum_probs=52.2

Q ss_pred             cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      ++|.|+|+|++.||+.|....     -.++-+.+.       .+|-.|-|   |.     |+.. ..             
T Consensus        14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~Vkv---D~-----~~~~-~~-------------   64 (124)
T cd02955          14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKV---DR-----EERP-DV-------------   64 (124)
T ss_pred             cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEE---eC-----CcCc-HH-------------
Confidence            489999999999999998531     124444443       35765554   32     1111 01             


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                           .....++....|++.|.|++|++||+|++++..
T Consensus        65 -----~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~   97 (124)
T cd02955          65 -----DKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG   97 (124)
T ss_pred             -----HHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence                 012234555578999999999999999999776

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK15000 peroxidase; Provisional

Probab=97.18  E-value=0.0024  Score=64.54  Aligned_cols=93  Identities=19%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             cCcEEEEEEecC-CC--ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhc-----CCCc
Q 005245          345 RRKSVLLLVSDL-DV--SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQY-----MMPW  415 (706)
Q Consensus       345 ~gK~VlL~fSal-~~--~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~-----~MPW  415 (706)
                      +||.|.|+|=.. ||  |+.|++.|.+.|+++++      .+++||=||. |     +....+.|.+ +..     .+||
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~g~~~i~f  100 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKGGIGPVKY  100 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhCCccccCc
Confidence            799999999886 54  55677889999999973      3599999985 3     1333344432 222     2344


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                      ..+-     |..  +.+.+.|++.      ..|..+++||+|++...
T Consensus       101 plls-----D~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~  140 (200)
T PRK15000        101 AMVA-----DVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ  140 (200)
T ss_pred             eEEE-----CCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence            4333     222  4556677876      69999999999999874

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.16  E-value=0.0017  Score=57.57  Aligned_cols=72  Identities=8%  Similarity=0.051  Sum_probs=50.8

Q ss_pred             cCcEEEEEEecCCCChhHHH--HH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~--~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +||.|+++|++.||++|...  .+   .++.+.++       +++.++.|-+       ++.+                 
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~-------~~~~-----------------   58 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADW-------TKND-----------------   58 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEec-------CCCC-----------------
Confidence            58999999999999999874  23   35655553       2566666632       2110                 


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECC-CCcee
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVV  454 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~p-qGkv~  454 (706)
                             .....+.+.|++.++|+++++++ +|+++
T Consensus        59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~   87 (104)
T cd02953          59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEP   87 (104)
T ss_pred             -------HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence                   12345667789999999999999 89876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.13  E-value=0.0028  Score=61.82  Aligned_cols=80  Identities=13%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .++.++++|-+.||++|..  |.|.++|++.         +++|+.|++ |      +...+.|       |   +.++.
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~-d------~~~~~~f-------p---~~~~~  102 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSL-D------GQGLTGF-------P---DPLPA  102 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEe-C------CCccccc-------c---cccCC
Confidence            3455699999999988765  7899988764         288999976 2      1111111       1   22221


Q ss_pred             CCCHHHHHHHHHhh---CCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKW---DFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~---~~~~iP~LVvL~pqGkv~~  455 (706)
                        +..   .+...+   ++.++|+.+++|++|+++-
T Consensus       103 --~~~---~~~~~~~~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738       103 --TPE---VMQTFFPNPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             --chH---HHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence              122   233445   7899999999999988643

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.13  E-value=0.0021  Score=64.70  Aligned_cols=104  Identities=12%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             eeecceecC-cEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhcC
Q 005245          338 KVSIDVLRR-KSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM  412 (706)
Q Consensus       338 kV~Is~L~g-K~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~~  412 (706)
                      ++.+++++| |.| +++|-+.|||.|.  +..|.+.|+++++      .+.+|+-|++ |+     .....+|.+ ..+.
T Consensus        16 ~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D~-----~~~~~~~~~~i~~~   83 (203)
T cd03016          16 PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-DS-----VESHIKWIEDIEEY   83 (203)
T ss_pred             cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-CC-----HHHHHHHHhhHHHh
Confidence            689999998 655 4467788876654  4679999999973      3589999986 31     333344432 3333


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCC----CC----cEEEEECCCCceecc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFR----KK----PILVVLDPQGRVVNQ  456 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~----~i----P~LVvL~pqGkv~~~  456 (706)
                      +. +.++||-..|..  +.+.+.|++.    +.    |..+|+||+|++...
T Consensus        84 ~~-~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~  132 (203)
T cd03016          84 TG-VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI  132 (203)
T ss_pred             cC-CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence            33 566676444433  4566677765    33    469999999998754

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.07  E-value=0.0012  Score=60.49  Aligned_cols=83  Identities=22%  Similarity=0.375  Sum_probs=54.3

Q ss_pred             cC-cEEEEEEecCCCChhHHH--HH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          345 RR-KSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       345 ~g-K~VlL~fSal~~~~~e~~--~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      +| |.|+++|++.||++|...  .+   ..+.+.++       ++|.++-|.+ |.     +.....|+.          
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~-d~-----~~~~~~~~~----------   68 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINI-DG-----DKEVTDFDG----------   68 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEc-cC-----CceeeccCC----------
Confidence            46 899999999999998863  33   24555553       3577777754 21     111111211          


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-Cceecc
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQ  456 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~  456 (706)
                          .  ....+.+...|++++.|++++++++ |+++..
T Consensus        69 ----~--~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~  101 (125)
T cd02951          69 ----E--ALSEKELARKYRVRFTPTVIFLDPEGGKEIAR  101 (125)
T ss_pred             ----C--CccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence                0  1124567788899999999999999 888743

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=96.94  E-value=0.0029  Score=63.79  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEE------EEEecccCCCCcChhhHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEV------VWLPIVDRSTPWTEAKEH  404 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEI------VwIpiVd~s~~w~D~de~  404 (706)
                      +-+.+.++.+.|+||.+++-|-|.||++|+.  |.|..+    ++      .+|.+      +=|.. |. ..|.   -.
T Consensus        46 ~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~-dd-~~~~---~~  110 (184)
T TIGR01626        46 DTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINA-DD-AIVG---TG  110 (184)
T ss_pred             cccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEEC-cc-chhh---HH
Confidence            3455678889999999999999999999887  678777    32      13555      55553 21 0111   12


Q ss_pred             HH-----HHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEE-EEECCCCceecc
Q 005245          405 KF-----EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPIL-VVLDPQGRVVNQ  456 (706)
Q Consensus       405 ~F-----e~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~L-VvL~pqGkv~~~  456 (706)
                      .|     ++....-||-.+-..    ..+  .+...|++.+.|.- +|+|++|+++..
T Consensus       111 ~fVk~fie~~~~~~P~~~vllD----~~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~  162 (184)
T TIGR01626       111 MFVKSSAKKGKKENPWSQVVLD----DKG--AVKNAWQLNSEDSAIIVLDKTGKVKFV  162 (184)
T ss_pred             HHHHHHHHHhcccCCcceEEEC----Ccc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence            23     445667898766653    332  34558999999888 799999998853

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.85  E-value=0.0052  Score=62.88  Aligned_cols=111  Identities=15%  Similarity=0.256  Sum_probs=69.9

Q ss_pred             CCCccccC--CCCceeec-ceecCcEEEE-EEecCCCC--hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcC
Q 005245          326 DQLPLVEC--PTKRKVSI-DVLRRKSVLL-LVSDLDVS--NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT  399 (706)
Q Consensus       326 ~~~pl~dg--~~~~kV~I-s~L~gK~VlL-~fSal~~~--~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~  399 (706)
                      +..|-|..  ..| ++.. +.++||.|.| +|=+.||+  +.|+..|.+.|+++++      .+.+||=||+ |+     
T Consensus        11 ~~aPdF~l~~~~G-~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-Ds-----   77 (215)
T PRK13191         11 EKFPEMEVITTHG-KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-DS-----   77 (215)
T ss_pred             CcCCCCEeecCCC-CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-CC-----
Confidence            33454432  234 4566 5589997666 67788854  4566789999999973      3589999985 42     


Q ss_pred             hhhHHHHHHhhc-----CCCceeeccCCCCCHHHHHHHHHhhCCC-------CCcEEEEECCCCceecc
Q 005245          400 EAKEHKFEALQY-----MMPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       400 D~de~~Fe~~~~-----~MPWyAVpf~~~id~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~  456 (706)
                      ......|.+...     ..||..+-     |..  +.+.+.|++-       ..|...||||+|++...
T Consensus        78 ~~~h~aw~~~~~~~~~~~i~fPlls-----D~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  139 (215)
T PRK13191         78 NISHIEWVMWIEKNLKVEVPFPIIA-----DPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI  139 (215)
T ss_pred             HHHHHHHHhhHHHhcCCCCceEEEE-----CCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence            333445543221     34443333     322  4555566752       37999999999998864

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=96.85  E-value=0.017  Score=58.07  Aligned_cols=124  Identities=10%  Similarity=0.135  Sum_probs=80.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEecccC-CCC-cChhhHHHHHH--
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR-STP-WTEAKEHKFEA--  408 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~-s~~-w~D~de~~Fe~--  408 (706)
                      .+|..|++++++||.|++.|-|.||+.+ +.+.|.++|++.+      +.+|+||=||.-+- ..+ =+.++-+.|-.  
T Consensus        13 ~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~------~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~   86 (183)
T PRK10606         13 IDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWA------DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTT   86 (183)
T ss_pred             CCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHh------hCCeEEEEeeccccccCCCCCHHHHHHHHHHc
Confidence            4667999999999999999999998765 4678999999986      24599999997210 000 12344455542  


Q ss_pred             hhcCCCce---eeccCCCCCHHHHHHHHHhhCCCCC----------------cE----------EEEECCCCceecccHH
Q 005245          409 LQYMMPWF---SVHHPSAIDPAVIRYAKEKWDFRKK----------------PI----------LVVLDPQGRVVNQNAL  459 (706)
Q Consensus       409 ~~~~MPWy---AVpf~~~id~~~~r~ike~~~~~~i----------------P~----------LVvL~pqGkv~~~nA~  459 (706)
                      +--+.|=+   .|.-+.  ..++-+||++.......                |.          =-++|++|+|+..   
T Consensus        87 ~g~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r---  161 (183)
T PRK10606         87 WGVTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR---  161 (183)
T ss_pred             cCCCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE---
Confidence            22223322   111111  23588999875543211                11          4678999999864   


Q ss_pred             HHHHHhCcccccCC
Q 005245          460 HMMWIWGSVAFPFS  473 (706)
Q Consensus       460 ~mI~~wG~~AFPFT  473 (706)
                           |+...-|-+
T Consensus       162 -----~~~~~~p~~  170 (183)
T PRK10606        162 -----FSPDMTPED  170 (183)
T ss_pred             -----ECCCCCCCH
Confidence                 787888854

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=96.70  E-value=0.0071  Score=54.15  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -+||.|+|.|.+.||++|..  +.|.++.++.        .+  ++|+-+ |.     |++.                  
T Consensus        13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--------~~--v~~~~v-d~-----d~~~------------------   58 (103)
T cd02985          13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--------ND--VVFLLV-NG-----DEND------------------   58 (103)
T ss_pred             cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--------CC--CEEEEE-EC-----CCCh------------------
Confidence            35899999999999999875  5566665544        12  455544 21     2211                  


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                            ..+.+.+.|++++.|+++++ .+|+++
T Consensus        59 ------~~~~l~~~~~V~~~Pt~~~~-~~G~~v   84 (103)
T cd02985          59 ------STMELCRREKIIEVPHFLFY-KDGEKI   84 (103)
T ss_pred             ------HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence                  12345677899999998777 789876

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK13189 peroxiredoxin; Provisional

Probab=96.65  E-value=0.0094  Score=61.25  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             eeecce-ecCcEEEE-EEecCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-hhcC
Q 005245          338 KVSIDV-LRRKSVLL-LVSDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM  412 (706)
Q Consensus       338 kV~Is~-L~gK~VlL-~fSal~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-~~~~  412 (706)
                      ++.+++ ++||.|.| +|=+.||+.  .|+..|.+.|+++++      .+.+||-||+ |+     .....+|-+ +...
T Consensus        26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D~-----~~~h~aw~~~~~~~   93 (222)
T PRK13189         26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-DQ-----VFSHIKWVEWIKEK   93 (222)
T ss_pred             CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-CC-----HHHHHHHHHhHHHh
Confidence            466655 69996655 667888655  556789999999973      4589999986 31     223334433 2221


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCC-------CCcEEEEECCCCceecc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~  456 (706)
                      .. ..++||=..|..  +.+.+.|++.       ..|..+++||+|++...
T Consensus        94 ~g-~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  141 (222)
T PRK13189         94 LG-VEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI  141 (222)
T ss_pred             cC-cCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence            00 012333222222  3455566754       46999999999998643

>PRK13599 putative peroxiredoxin; Provisional

Probab=96.63  E-value=0.0078  Score=61.64  Aligned_cols=109  Identities=10%  Similarity=0.029  Sum_probs=70.8

Q ss_pred             CCCceeecceecCcEE-EEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~V-lL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..|+.+..+.++||.| +++|=+.|||.|-  +..|.+.|++++.      .+++||=||. |+     ......|.+..
T Consensus        16 ~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D~-----~~~~~~w~~~i   83 (215)
T PRK13599         16 TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-DQ-----VFSHIKWVEWI   83 (215)
T ss_pred             CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-CC-----HHHHHHHHHhH
Confidence            4566677789999975 6688888876654  4679999999973      3589999985 31     33455564432


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCC-------CCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDF-------RKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~-------~~iP~LVvL~pqGkv~~~  456 (706)
                      ..+-=+.++||=..|..  +.+.+.|++       ...|...|+||+|++...
T Consensus        84 ~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         84 KDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             HHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            21100134454333322  234556666       357999999999999865

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=96.62  E-value=0.0045  Score=57.37  Aligned_cols=20  Identities=15%  Similarity=0.086  Sum_probs=17.9

Q ss_pred             ecCcEEEEEEecCCCChhHH
Q 005245          344 LRRKSVLLLVSDLDVSNEEL  363 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~  363 (706)
                      -+||.|+|.|++.||++|..
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~   36 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKA   36 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHH
Confidence            35899999999999999986

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=96.57  E-value=0.012  Score=50.96  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++++...       +.  +.++-+ |       .++                   
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~--~~~~~v-d-------~~~-------------------   54 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQ--FVLAKV-N-------CDA-------------------   54 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------Cc--EEEEEE-e-------ccC-------------------
Confidence            4789999999999999885  56777766653       22  445544 2       111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                            .+.+.+.|++++.|++++++ +|+.+
T Consensus        55 ------~~~l~~~~~i~~~Pt~~~~~-~g~~~   79 (96)
T cd02956          55 ------QPQIAQQFGVQALPTVYLFA-AGQPV   79 (96)
T ss_pred             ------CHHHHHHcCCCCCCEEEEEe-CCEEe
Confidence                  12356778999999999997 89875

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.33  E-value=0.0084  Score=53.76  Aligned_cols=67  Identities=9%  Similarity=0.026  Sum_probs=47.0

Q ss_pred             ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          342 DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       342 s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +.++||.|++.|.+.||++|..  +.|.++.++.+        ++  .++-+ |       .+.               .
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~--~~~~v-d-------~~~---------------~   60 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QI--RHLAI-E-------ESS---------------I   60 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cC--ceEEE-E-------CCC---------------C
Confidence            3578999999999999988875  67777776653        23  34433 3       110               1


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCC
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ  450 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pq  450 (706)
                      +         ..+.+.|++++.|+++++++.
T Consensus        61 ~---------~~l~~~~~V~~~PT~~lf~~g   82 (100)
T cd02999          61 K---------PSLLSRYGVVGFPTILLFNST   82 (100)
T ss_pred             C---------HHHHHhcCCeecCEEEEEcCC
Confidence            1         145577899999999999754

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.28  E-value=0.02  Score=50.43  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|++.||+.|..  +.|.++.+++.       +++.++.|-+        |++.                   
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--------d~~~-------------------   57 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--------DEDQ-------------------   57 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCCH-------------------
Confidence            4789999999999999875  57888777763       2455555522        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              -+.+.+++.+.|+++++. +|+++
T Consensus        58 --------~l~~~~~v~~vPt~~i~~-~g~~v   80 (97)
T cd02949          58 --------EIAEAAGIMGTPTVQFFK-DKELV   80 (97)
T ss_pred             --------HHHHHCCCeeccEEEEEE-CCeEE
Confidence                    144567899999999995 78887

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK10996 thioredoxin 2; Provisional

Probab=96.13  E-value=0.024  Score=53.89  Aligned_cols=69  Identities=17%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+|+|++.||++|..  +.|.+++++..       ++  +.|+-+ |.     |+.                    
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~--v~~~~v-d~-----~~~--------------------   95 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GK--VRFVKV-NT-----EAE--------------------   95 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CC--eEEEEE-eC-----CCC--------------------
Confidence            4899999999999999875  56777776653       23  555543 21     110                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                             ..+.+.|++++.|+++++. +|+.+..
T Consensus        96 -------~~l~~~~~V~~~Ptlii~~-~G~~v~~  121 (139)
T PRK10996         96 -------RELSARFRIRSIPTIMIFK-NGQVVDM  121 (139)
T ss_pred             -------HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence                   2356788999999999885 8987753

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.13  E-value=0.019  Score=54.08  Aligned_cols=78  Identities=9%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             cCcEEEEEEec-------CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245          345 RRKSVLLLVSD-------LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW  415 (706)
Q Consensus       345 ~gK~VlL~fSa-------l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW  415 (706)
                      +||.|.++|+|       .||++|..  +.|.++.++.+       .+..++.|=+ |....|.|.              
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdv-d~~~~w~d~--------------   77 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDV-GDRPYWRDP--------------   77 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEc-CCcccccCc--------------
Confidence            58899999999       99999996  67888877763       2356666632 211111111              


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCC-CCcEEEEECCCCceeccc
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~n  457 (706)
                                   ...+...++++ ++|+++++...++++.++
T Consensus        78 -------------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~  107 (119)
T cd02952          78 -------------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE  107 (119)
T ss_pred             -------------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence                         12344567888 999999999888888766

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=96.07  E-value=0.011  Score=51.06  Aligned_cols=52  Identities=13%  Similarity=0.148  Sum_probs=39.9

Q ss_pred             ceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhhh
Q 005245          506 QKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRIIS  557 (706)
Q Consensus       506 gK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~~  557 (706)
                      ||+++|||.+.+ ..|+++.+.+.++++..+  ..+++|+|+.|...+..++.++
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~   55 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLK   55 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHH
Confidence            899999999942 345999999999988755  9999999999977676655443

...

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.02  E-value=0.019  Score=49.83  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=46.6

Q ss_pred             EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          348 SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       348 ~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      .|+|+|.+.||++|..  +.+.+++++.+.    ...++.++-|   |       .+.                .     
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~v---d-------~~~----------------~-----   62 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKV---D-------CTQ----------------H-----   62 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEE---E-------CCC----------------C-----
Confidence            4999999999999886  678888888862    1234555544   2       111                0     


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                          ..+.+.|++++.|+++++ ++|+.+
T Consensus        63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~   86 (102)
T cd03005          63 ----RELCSEFQVRGYPTLLLF-KDGEKV   86 (102)
T ss_pred             ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence                134556899999999999 677754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00051 thioredoxin; Provisional

Probab=95.91  E-value=0.022  Score=49.39  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+|+|.+.||++|..  +.|.++.++.        .  ++.|+.+        |.++                   
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--------~--~~~~~~v--------d~~~-------------------   59 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEY--------T--KMVFVKV--------DVDE-------------------   59 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--------C--CcEEEEE--------ECcc-------------------
Confidence            3789999999999999886  3455555432        1  2566655        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            ...+.+.|++++.|+++++ .+|+++.
T Consensus        60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~   85 (98)
T PTZ00051         60 ------LSEVAEKENITSMPTFKVF-KNGSVVD   85 (98)
T ss_pred             ------hHHHHHHCCCceeeEEEEE-eCCeEEE
Confidence                  1245677899999998877 6888763

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=95.76  E-value=0.044  Score=49.83  Aligned_cols=72  Identities=14%  Similarity=0.051  Sum_probs=51.0

Q ss_pred             eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      ...||.|+++|.+.||++|..  +.+.++.++++.      .  ++.+.-+ |.     |.+                  
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~--~v~~~~v-d~-----d~~------------------   68 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------L--GVGIATV-NA-----GHE------------------   68 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------c--CceEEEE-ec-----ccc------------------
Confidence            447899999999999999876  678888888752      2  2344433 21     211                  


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                               +.+.+.|++++.|+++++ ++|+.+..
T Consensus        69 ---------~~l~~~~~V~~~Pt~~i~-~~g~~~~~   94 (111)
T cd02963          69 ---------RRLARKLGAHSVPAIVGI-INGQVTFY   94 (111)
T ss_pred             ---------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                     235677899999999999 48887643

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=95.65  E-value=0.06  Score=48.03  Aligned_cols=67  Identities=9%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|.|+|.+.||++|..  +.|.+++++.+      +..  +.|+-+ |.     | ..                   
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~------~~~--~~~~~v-d~-----d-~~-------------------   61 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG------DDL--LHFATA-EA-----D-TI-------------------   61 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC------CCc--EEEEEE-eC-----C-CH-------------------
Confidence            4889999999999999885  56777777663      122  334432 21     2 10                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                          +    +.+.|++++.|+++++. +|+.+
T Consensus        62 ----~----~~~~~~v~~~Pt~~~~~-~g~~~   84 (102)
T cd02948          62 ----D----TLKRYRGKCEPTFLFYK-NGELV   84 (102)
T ss_pred             ----H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence                1    23677999999998885 77655

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=95.52  E-value=0.076  Score=45.73  Aligned_cols=69  Identities=10%  Similarity=0.070  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.+.++|.+.||++|.-  +.|.++.+.++     .+.++.++.+.+        |+.                    
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~-----~~~~~~~~~~d~--------~~~--------------------   58 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK-----GDPDIVLAKVDA--------TAE--------------------   58 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhc-----cCCceEEEEEEc--------cch--------------------
Confidence            6899999999999999875  57777777664     222455555532        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                             ..+.+.+++++.|++++++++|.+
T Consensus        59 -------~~~~~~~~i~~~P~~~~~~~~~~~   82 (102)
T TIGR01126        59 -------KDLASRFGVSGFPTIKFFPKGKKP   82 (102)
T ss_pred             -------HHHHHhCCCCcCCEEEEecCCCcc
Confidence                   235577899999999999988864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=95.49  E-value=0.042  Score=48.81  Aligned_cols=66  Identities=12%  Similarity=0.032  Sum_probs=46.9

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+++.|+++|.+.||++|..  +.|.+++++.+.    .+  ..+.+..+ |       .+.                + 
T Consensus        13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~--~~~~~~~v-d-------~~~----------------~-   61 (104)
T cd03000          13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS----SG--SPVRVGKL-D-------ATA----------------Y-   61 (104)
T ss_pred             ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh----cC--CcEEEEEE-E-------Ccc----------------C-
Confidence            35689999999999999885  689888888862    12  23555544 2       111                1 


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEEC
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLD  448 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~  448 (706)
                              ..+.+.|++++.|+++++.
T Consensus        62 --------~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          62 --------SSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             --------HhHHhhcCCccccEEEEEc
Confidence                    1345678999999999994

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=95.42  E-value=0.063  Score=47.40  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=47.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+|+|.+.||++|..  +.+.++.++++       ..+.++.|-+        |.++                   
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~--------~~~~-------------------   62 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDC--------DEDK-------------------   62 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEec--------Cccc-------------------
Confidence            3778999999999999875  46666666553       3466666633        2110                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                            .+.+.+.|++++.|+++++++.|+
T Consensus        63 ------~~~~~~~~~i~~~Pt~~~~~~~~~   86 (109)
T cd03002          63 ------NKPLCGKYGVQGFPTLKVFRPPKK   86 (109)
T ss_pred             ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence                  123556789999999999998874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK09381 trxA thioredoxin; Provisional

Probab=95.38  E-value=0.072  Score=47.46  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=47.9

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.|.++.++..       +++.+.-|-+        |...                    
T Consensus        21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------~~~~--------------------   65 (109)
T PRK09381         21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQNP--------------------   65 (109)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEEC--------CCCh--------------------
Confidence            789999999999999885  67888887763       2354444422        2111                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             .+.++|++++.|+++++ ++|+++.
T Consensus        66 -------~~~~~~~v~~~Pt~~~~-~~G~~~~   89 (109)
T PRK09381         66 -------GTAPKYGIRGIPTLLLF-KNGEVAA   89 (109)
T ss_pred             -------hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence                   13467899999999999 6898763

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=95.26  E-value=0.067  Score=46.21  Aligned_cols=67  Identities=24%  Similarity=0.338  Sum_probs=45.5

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.|.++.+++       .  ..+.|+-+        |.++                    
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-------~--~~i~~~~v--------d~~~--------------------   56 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-------F--PSVLFLSI--------EAEE--------------------   56 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-------C--CceEEEEE--------cccc--------------------
Confidence            699999999999999874  3454444443       1  24566544        2211                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           ...+.+.|++.+.|+++++. +|+.+.
T Consensus        57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~   82 (97)
T cd02984          57 -----LPEISEKFEITAVPTFVFFR-NGTIVD   82 (97)
T ss_pred             -----CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence                 12355678999999999995 888763

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>TIGR01068 thioredoxin thioredoxin

Probab=95.18  E-value=0.076  Score=45.43  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=45.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|.++|.+.||++|..  +.|.++.++..       ++..++.|=.        |.+                     
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~---------------------   57 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN---------------------   57 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence            579999999999988876  45555554442       3466666622        111                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                            +.+.+.|++++.|+++++ ++|+++
T Consensus        58 ------~~~~~~~~v~~~P~~~~~-~~g~~~   81 (101)
T TIGR01068        58 ------PDIAAKYGIRSIPTLLLF-KNGKEV   81 (101)
T ss_pred             ------HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence                  124466799999999999 678754

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=95.16  E-value=0.098  Score=47.14  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|++.|.+.||++|..  +.+.++.++++      +.++.+.-|-+        |.+.                   
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~------~~~~~~~~vd~--------d~~~-------------------   66 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA------GSNVKVAKFNA--------DGEQ-------------------   66 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc------cCCeEEEEEEC--------Cccc-------------------
Confidence            4799999999999999886  46777766664      22455555522        2100                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                            ..+.++.+++++.|+++++++.|+
T Consensus        67 ------~~~~~~~~~v~~~Pti~~f~~~~~   90 (109)
T cd02993          67 ------REFAKEELQLKSFPTILFFPKNSR   90 (109)
T ss_pred             ------hhhHHhhcCCCcCCEEEEEcCCCC
Confidence                  112234579999999999988764

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PHA02278 thioredoxin-like protein

Probab=95.05  E-value=0.057  Score=49.28  Aligned_cols=71  Identities=14%  Similarity=0.351  Sum_probs=45.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +++.|+++|.|.||+||..  |.|.++-++.       ..+.+++.|=+        |  +..++               
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~-------~~~~~~~~vdv--------d--~~~~d---------------   60 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG-------DIKKPILTLNL--------D--AEDVD---------------   60 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh-------cCCceEEEEEC--------C--ccccc---------------
Confidence            5889999999999999996  4455543332       22345666633        2  11110               


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                            ...+.+.|+++++|+++++. +|+.+
T Consensus        61 ------~~~l~~~~~I~~iPT~i~fk-~G~~v   85 (103)
T PHA02278         61 ------REKAVKLFDIMSTPVLIGYK-DGQLV   85 (103)
T ss_pred             ------cHHHHHHCCCccccEEEEEE-CCEEE
Confidence                  12256788999999999996 46554

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.18  Score=49.97  Aligned_cols=103  Identities=20%  Similarity=0.224  Sum_probs=68.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.+|..|.+++++||.|.|||=--+..| |  |.--+...|.+++.      -+.+|+=||. |     +-...++|.+-
T Consensus        17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~------~~a~V~GIS~-D-----s~~~~~~F~~k   84 (157)
T COG1225          17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK------LGAVVLGISP-D-----SPKSHKKFAEK   84 (157)
T ss_pred             cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh------CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence            4556679999999999999997776333 3  33458888888863      3699999985 4     35677888763


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~  455 (706)
                      .      .++|+=+.|...  .+.+.|++-            -+++-.|||++|++..
T Consensus        85 ~------~L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~  134 (157)
T COG1225          85 H------GLTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY  134 (157)
T ss_pred             h------CCCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence            3      233322212221  255555652            3578899999999975

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=95.04  E-value=0.05  Score=63.33  Aligned_cols=72  Identities=18%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~---L--~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +||.|++.|.+.||++|....   +  .++.++++        +|  +++-+ |    |++.++                
T Consensus       473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~--~~v~v-D----vt~~~~----------------  521 (571)
T PRK00293        473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DT--VLLQA-D----VTANNA----------------  521 (571)
T ss_pred             cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CC--EEEEE-E----CCCCCh----------------
Confidence            489999999999999998631   1  34444442        34  45543 3    444321                


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              ..+.+.++|++.+.|+++++|++|+.++
T Consensus       522 --------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~  549 (571)
T PRK00293        522 --------EDVALLKHYNVLGLPTILFFDAQGQEIP  549 (571)
T ss_pred             --------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence                    1234567789999999999999999853

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=94.89  E-value=0.041  Score=53.59  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             CceEEEEEccCChhH---HHHHHHHHHHHHHHh--------CCceeEEEeccCCchhhhhhhhhhhccccccCCCCCCcc
Q 005245          505 EQKHICLYGGEDLEW---VRKFTALMGAVARAA--------GIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTL  573 (706)
Q Consensus       505 egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~--------~~~~E~v~Vgkdn~~e~v~~~~~~i~~e~ls~~~~d~t~  573 (706)
                      .||.++|||.+  .|   |++|++.+.+++++.        +.+||+|+|+.|...+.+++.++...   +  .|..   
T Consensus        24 kgk~vlL~FwA--sWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~---~--~~~~---   93 (146)
T cd03008          24 ENRVLLLFFGA--VVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMP---K--KWLF---   93 (146)
T ss_pred             CCCEEEEEEEC--CCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCC---C--Ccee---
Confidence            89999999999  66   599999999987632        23699999999977777766543221   1  1111   


Q ss_pred             hhhhHHHhhhhhhhhhccCCCCCCChhHHHHHHHhcccCCCCceEEEecCCcccccchhhHH
Q 005245          574 IWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETIL  635 (706)
Q Consensus       574 v~~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LLs~~~~~~GWavlskGs~~~~g~G~~~l  635 (706)
                      ++ |..........+.+-          ..|+++.-+|  +.|=.+-..|...+.-+|...+
T Consensus        94 ~p-~~~~~~~~l~~~y~v----------~~iPt~vlId--~~G~Vv~~~~~~~i~~~g~~~~  142 (146)
T cd03008          94 LP-FEDEFRRELEAQFSV----------EELPTVVVLK--PDGDVLAANAVDEILRLGPACF  142 (146)
T ss_pred             ec-ccchHHHHHHHHcCC----------CCCCEEEEEC--CCCcEEeeChHHHHHHHHHHHH
Confidence            01 111111112222221          2578888888  4477776666666677775443

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=94.88  E-value=0.33  Score=49.68  Aligned_cols=113  Identities=15%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             ccCCCCceeecceecCcEEEEEEecC---CCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDL---DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal---~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      +....|+++....|+||.+++||.=-   +.||-.+..|.++.++|.+   ..+.++.+|+|++ |   |+.|. .+.-+
T Consensus        52 l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-D---PerDt-p~~lk  123 (207)
T COG1999          52 LTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-D---PERDT-PEVLK  123 (207)
T ss_pred             eecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-C---CCCCC-HHHHH
Confidence            34567889999999999999999943   4777888899999999974   3678999999986 6   44444 33344


Q ss_pred             Hhhc--C-CCceeeccCCCCCHHHHHHHHHhhCC---------------CCCcEEEEECCCCceec
Q 005245          408 ALQY--M-MPWFSVHHPSAIDPAVIRYAKEKWDF---------------RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       408 ~~~~--~-MPWyAVpf~~~id~~~~r~ike~~~~---------------~~iP~LVvL~pqGkv~~  455 (706)
                      +|-.  - =+|--+--+    .+..+.+...|++               .+-..+.++||+|++..
T Consensus       124 ~Y~~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~  185 (207)
T COG1999         124 KYAELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG  185 (207)
T ss_pred             HHhcccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence            4444  1 124444431    2334444443333               33456778899998764

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=94.52  E-value=0.16  Score=44.47  Aligned_cols=67  Identities=9%  Similarity=-0.021  Sum_probs=42.6

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      ++|+ ++|+|.+.||++|..  +.+.++.+..+      +.++.+.-|-.        |++.                  
T Consensus        15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~~------------------   61 (101)
T cd02994          15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD------DLGINVAKVDV--------TQEP------------------   61 (101)
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc------cCCeEEEEEEc--------cCCH------------------
Confidence            4566 679999999999875  45555554432      22344443321        1111                  


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                               .+.+.|++++.|+++++ ++|++
T Consensus        62 ---------~~~~~~~i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          62 ---------GLSGRFFVTALPTIYHA-KDGVF   83 (101)
T ss_pred             ---------hHHHHcCCcccCEEEEe-CCCCE
Confidence                     14567899999999886 88875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.46  E-value=0.16  Score=44.62  Aligned_cols=67  Identities=12%  Similarity=0.033  Sum_probs=43.8

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -++|.|+++|.+.||++|..  +.+.++-++++       +.+  .+.-+ |       .++.                 
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~--~~~~v-d-------~~~~-----------------   61 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVI--RIGAV-N-------CGDD-----------------   61 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc-------Cce--EEEEE-e-------CCcc-----------------
Confidence            35689999999999999874  44555544442       233  44432 2       1110                 


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                              +.+.+.+++++.|+++++ ++|+.
T Consensus        62 --------~~~~~~~~v~~~Pt~~~~-~~g~~   84 (101)
T cd03003          62 --------RMLCRSQGVNSYPSLYVF-PSGMN   84 (101)
T ss_pred             --------HHHHHHcCCCccCEEEEE-cCCCC
Confidence                    134567799999999999 78874

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=94.30  E-value=0.089  Score=50.52  Aligned_cols=92  Identities=12%  Similarity=0.237  Sum_probs=60.5

Q ss_pred             cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +||.|+|+|.+.||++|....     =.++-+.++       ++|  |.|.+..   +++|..          .+    |
T Consensus        22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td~~----------~~----~   75 (130)
T cd02960          22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTDKN----------LS----P   75 (130)
T ss_pred             CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCCCC----------cC----c
Confidence            489999999999999998731     123333332       346  5554421   223210          00    0


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE  483 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  483 (706)
                        +              + .+.|+++++||+|+++.+    +.--++...|-+.+++.+.|.+-
T Consensus        76 --~--------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~  118 (130)
T cd02960          76 --D--------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN  118 (130)
T ss_pred             --c--------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence              1              1 368999999999998864    35678888899999998888653

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=94.30  E-value=0.23  Score=41.89  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=45.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +++.++++|.+.||++|..  +.+.++.+.++     .+.++.++=|..          ++                   
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~~~v~~----------~~-------------------   59 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-----GDGKVVVAKVDC----------TA-------------------   59 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-----cCCceEEEEeec----------cc-------------------
Confidence            4558999999999988876  46777766663     123444443321          11                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCC
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQG  451 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqG  451 (706)
                            ...+.+.+++++.|++++++++|
T Consensus        60 ------~~~~~~~~~i~~~Pt~~~~~~~~   82 (101)
T cd02961          60 ------NNDLCSEYGVRGYPTIKLFPNGS   82 (101)
T ss_pred             ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence                  12445667999999999999886

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=94.29  E-value=0.15  Score=44.17  Aligned_cols=68  Identities=19%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|.-  +.+.++.++++     ...+  ++++.+ |       .+++               +   
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~-----~~~~--~~~~~i-d-------~~~~---------------~---   64 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA-----NEDD--VVIAKV-D-------ADEA---------------N---   64 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhC-----CCCC--EEEEEE-E-------CCCc---------------c---
Confidence            678999999999998875  56777777764     1223  445544 2       1111               1   


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                            ..+.+.|++++.|+++++++.|+
T Consensus        65 ------~~~~~~~~i~~~P~~~~~~~~~~   87 (105)
T cd02998          65 ------KDLAKKYGVSGFPTLKFFPKGST   87 (105)
T ss_pred             ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence                  23456679999999999998764

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=94.22  E-value=0.16  Score=45.32  Aligned_cols=71  Identities=14%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ++.|+++|.+.||++|..  +.+.++++++++.   ..+.-.++|..+        |.++                    
T Consensus        18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~~~~~~~v--------d~d~--------------------   66 (108)
T cd02996          18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEE---FPDAGKVVWGKV--------DCDK--------------------   66 (108)
T ss_pred             CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhc---cCCCCcEEEEEE--------ECCC--------------------
Confidence            578999999999998875  5788888887632   111113555554        2211                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                           -+.+.+.|++++.|+++++ ++|+.
T Consensus        67 -----~~~l~~~~~v~~~Ptl~~~-~~g~~   90 (108)
T cd02996          67 -----ESDIADRYRINKYPTLKLF-RNGMM   90 (108)
T ss_pred             -----CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence                 1235677899999999998 67874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=94.10  E-value=0.15  Score=47.98  Aligned_cols=71  Identities=8%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      .+|.|.+.|+|.||+||.  .+..+++++.+.   ..+.  +.|+-+ |       .|+                     
T Consensus        13 ~~~~vVV~F~A~WCgpCk--~m~P~le~la~~---~~~~--v~f~kV-D-------vD~---------------------   56 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCM--QMDEVLAKIAED---VSNF--AVIYLV-D-------IDE---------------------   56 (114)
T ss_pred             CCCEEEEEEECCCChhHH--HHHHHHHHHHHH---ccCc--eEEEEE-E-------CCC---------------------
Confidence            467899999999999998  455666666532   1122  334432 2       222                     


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                          ..-+.+.|+++++|+++++- +|+.+..
T Consensus        57 ----~~~la~~~~V~~iPTf~~fk-~G~~v~~   83 (114)
T cd02954          57 ----VPDFNKMYELYDPPTVMFFF-RNKHMKI   83 (114)
T ss_pred             ----CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence                12355778999999999997 6777754

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.52  E-value=0.45  Score=43.20  Aligned_cols=71  Identities=17%  Similarity=0.324  Sum_probs=44.6

Q ss_pred             cCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~---L--~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      ++|.|++||.+.||++|....   |  .++-+.+++       +  .|++.+ |    .++.+                 
T Consensus        16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-------~--~v~~~~-d----~~~~e-----------------   64 (114)
T cd02958          16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-------N--FIFWQC-D----IDSSE-----------------   64 (114)
T ss_pred             hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-------C--EEEEEe-c----CCCcc-----------------
Confidence            589999999999998887642   1  233333431       2  222222 1    11111                 


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECC-CCceec
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVVN  455 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~p-qGkv~~  455 (706)
                              + ..+.+.+++++.|+++++|| +|+++.
T Consensus        65 --------~-~~~~~~~~~~~~P~~~~i~~~~g~~l~   92 (114)
T cd02958          65 --------G-QRFLQSYKVDKYPHIAIIDPRTGEVLK   92 (114)
T ss_pred             --------H-HHHHHHhCccCCCeEEEEeCccCcEeE
Confidence                    1 22455678999999999999 798875

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PTZ00102 disulphide isomerase; Provisional

Probab=93.49  E-value=0.2  Score=55.68  Aligned_cols=69  Identities=14%  Similarity=0.138  Sum_probs=45.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+|+|.+.||++|..  +.|.++-++.+     ..+.+-+++|-.        |..+                   
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~-----~~~~v~~~~id~--------~~~~-------------------  421 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYK-----DNDSIIVAKMNG--------TANE-------------------  421 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhc-----cCCcEEEEEEEC--------CCCc-------------------
Confidence            4899999999999999875  44555544443     223455666532        1111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                              .+.+.|++++.|+++++++.|++
T Consensus       422 --------~~~~~~~v~~~Pt~~~~~~~~~~  444 (477)
T PTZ00102        422 --------TPLEEFSWSAFPTILFVKAGERT  444 (477)
T ss_pred             --------cchhcCCCcccCeEEEEECCCcc
Confidence                    12346688999999999987775

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=93.46  E-value=0.28  Score=45.92  Aligned_cols=38  Identities=3%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI  391 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi  391 (706)
                      .|+.+.+||++.|||+|..  |.|.++=++         .+.+|.+|-+
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---------~~~~~y~vdv   61 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---------TKAPIYYIDS   61 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHh---------cCCcEEEEEC
Confidence            3788999999999999987  566655433         2366888854

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=93.16  E-value=0.4  Score=43.99  Aligned_cols=64  Identities=16%  Similarity=0.211  Sum_probs=41.1

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      ++.|.++|++.||++|..  +.++.+++.+.    .+..+++.|=          .++  +                   
T Consensus        22 ~~~vvv~f~a~wC~~C~~--~~~~l~~la~~----~~~i~~~~vd----------~d~--~-------------------   64 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEV--TKQLLEELSEL----SDKLKLEIYD----------FDE--D-------------------   64 (113)
T ss_pred             CeEEEEEeCCCCCCChHH--HHHHHHHHHHh----cCceEEEEEe----------CCc--C-------------------
Confidence            456889999999999974  33444444321    1235555552          221  0                   


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCC
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQ  450 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pq  450 (706)
                          +.+.+.|++++.|++++++..
T Consensus        65 ----~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          65 ----KEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             ----HHHHHHcCCCcCCEEEEEeCC
Confidence                135567899999999999753

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=92.98  E-value=0.46  Score=41.21  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=46.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +++.++++|.+.||++|.-  +.+.++.++++.     ...  ++++-+ |-     +.+                .+  
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~--~~~~~i-d~-----~~~----------------~~--   64 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGK--GVLAAV-DC-----TKP----------------EH--   64 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCc--eEEEEE-EC-----CCC----------------cc--
Confidence            4678999999999999886  578888877752     122  444433 21     110                00  


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.+++++.|+++++. +|+++
T Consensus        65 -------~~~~~~~~i~~~Pt~~~~~-~g~~~   88 (104)
T cd02997          65 -------DALKEEYNVKGFPTFKYFE-NGKFV   88 (104)
T ss_pred             -------HHHHHhCCCccccEEEEEe-CCCee
Confidence                   1245667999999987764 77754

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=92.93  E-value=0.49  Score=41.10  Aligned_cols=63  Identities=11%  Similarity=0.012  Sum_probs=42.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ++.|+|+|.+.||++|.-  +.+.++.++.+       +.+.+.-+   |       .++                    
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~i---d-------~~~--------------------   60 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAV---D-------ADV--------------------   60 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEE---E-------Ccc--------------------
Confidence            566999999999988775  45666666553       23444444   2       111                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCC
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQ  450 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pq  450 (706)
                           ...+.+.|++++.|+++++++.
T Consensus        61 -----~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          61 -----HQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             -----hHHHHHHCCCCccCEEEEECCC
Confidence                 1234567899999999999755

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=92.87  E-value=3.9  Score=41.53  Aligned_cols=68  Identities=13%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             CcEEEEEEe--cCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVS--DLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fS--al~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      |+.|.+|++  +.||++|..  +..+++++.+.    -++.+|.++-+        |.++                    
T Consensus        20 ~~~i~~f~~~~a~wC~~C~~--~~p~l~~la~~----~~~~~i~~v~v--------d~~~--------------------   65 (215)
T TIGR02187        20 PVEIVVFTDNDKEGCQYCKE--TEQLLEELSEV----SPKLKLEIYDF--------DTPE--------------------   65 (215)
T ss_pred             CeEEEEEcCCCCCCCCchHH--HHHHHHHHHhh----CCCceEEEEec--------CCcc--------------------
Confidence            566666666  589999985  66677777532    23577888865        2221                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                           -+.+.+.|++++.|++++++. |+.
T Consensus        66 -----~~~l~~~~~V~~~Pt~~~f~~-g~~   89 (215)
T TIGR02187        66 -----DKEEAEKYGVERVPTTIILEE-GKD   89 (215)
T ss_pred             -----cHHHHHHcCCCccCEEEEEeC-Cee
Confidence                 123556779999999999974 544

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.80  E-value=0.52  Score=41.48  Aligned_cols=69  Identities=12%  Similarity=0.075  Sum_probs=43.5

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      .+|.|+++|.+.||++|..  +...|+++.+.   ..+...+.-|   |       .++                     
T Consensus        18 ~~~~v~v~f~a~wC~~C~~--~~p~~~~~~~~---~~~~~~~~~v---d-------~~~---------------------   61 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQA--LLPELRKAARA---LKGKVKVGSV---D-------CQK---------------------   61 (104)
T ss_pred             CCCeEEEEEECCCCHHHHH--HHHHHHHHHHH---hcCCcEEEEE---E-------CCc---------------------
Confidence            3679999999999999875  34455555421   1223333333   2       110                     


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                          .+.+.+.+++++.|+++++.+.|+.
T Consensus        62 ----~~~~~~~~~i~~~Pt~~~~~~g~~~   86 (104)
T cd03004          62 ----YESLCQQANIRAYPTIRLYPGNASK   86 (104)
T ss_pred             ----hHHHHHHcCCCcccEEEEEcCCCCC
Confidence                1235567899999999999876443

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=92.76  E-value=0.18  Score=47.22  Aligned_cols=44  Identities=16%  Similarity=0.363  Sum_probs=36.6

Q ss_pred             cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 005245          502 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN  547 (706)
Q Consensus       502 ~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn  547 (706)
                      .++.|+++.+|||+.+ .|||.|.+.+.+++++  ....++||..|.
T Consensus        19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~   63 (122)
T TIGR01295        19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN   63 (122)
T ss_pred             HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence            4678999999999965 7779999999999876  457789998874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=92.19  E-value=0.56  Score=38.51  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=42.2

Q ss_pred             cEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245          347 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP  426 (706)
Q Consensus       347 K~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~  426 (706)
                      +.++|+|.+.||+.|..  +.+.++++..    ...++.++.|..        +.                         
T Consensus        11 ~~~ll~~~~~~C~~C~~--~~~~~~~~~~----~~~~~~~~~i~~--------~~-------------------------   51 (93)
T cd02947          11 KPVVVDFWAPWCGPCKA--IAPVLEELAE----EYPKVKFVKVDV--------DE-------------------------   51 (93)
T ss_pred             CcEEEEEECCCChhHHH--hhHHHHHHHH----HCCCceEEEEEC--------CC-------------------------
Confidence            88999999999999864  3444555442    134566776643        11                         


Q ss_pred             HHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          427 AVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       427 ~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                        .+.+.+.|++.+.|+++++. +|+
T Consensus        52 --~~~~~~~~~v~~~P~~~~~~-~g~   74 (93)
T cd02947          52 --NPELAEEYGVRSIPTFLFFK-NGK   74 (93)
T ss_pred             --ChhHHHhcCcccccEEEEEE-CCE
Confidence              11234567999999999995 555

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=92.02  E-value=1.2  Score=40.45  Aligned_cols=87  Identities=16%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      ++.|.++|.+.||++|..  +..+++++.+.    -.+  +.|+-+ |       .++                      
T Consensus        24 ~~~vvv~F~a~~c~~C~~--l~~~l~~la~~----~~~--v~f~~v-d-------~~~----------------------   65 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKI--LDSHLEELAAK----YPE--TKFVKI-N-------AEK----------------------   65 (113)
T ss_pred             CCEEEEEEeCCCCCcHHH--HHHHHHHHHHH----CCC--cEEEEE-E-------chh----------------------
Confidence            589999999999999984  55555665422    112  344433 2       111                      


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHH
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEA  479 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~ee  479 (706)
                       .   .|.+.|++++.|+++++- +|+.+.. -.+.....|   ..|+...++.
T Consensus        66 -~---~l~~~~~i~~~Pt~~~f~-~G~~v~~-~~G~~~~~~---~~~~~~~l~~  110 (113)
T cd02957          66 -A---FLVNYLDIKVLPTLLVYK-NGELIDN-IVGFEELGG---DDFTTEDLEK  110 (113)
T ss_pred             -h---HHHHhcCCCcCCEEEEEE-CCEEEEE-EecHHHhCC---CCCCHHHHHH
Confidence             1   456778999999998885 5777632 223344555   6777666654

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=91.52  E-value=1.2  Score=40.86  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.+.++.++++..    .+.+.+   ..||-     +.+  .                  
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~v~~---~~vd~-----~~~--~------------------   66 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPVVRV---AAVDC-----ADE--E------------------   66 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCceEE---EEEec-----cch--h------------------
Confidence            479999999999999876  5677777777531    112222   33331     111  1                  


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHH
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNAL  459 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~  459 (706)
                           ...+.+.|++++.|+++++.+.+ ....+|.
T Consensus        67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~   96 (114)
T cd02992          67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDGL   96 (114)
T ss_pred             -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence                 12345677999999999996544 5555443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.23  E-value=0.55  Score=40.33  Aligned_cols=67  Identities=13%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.++-++..       +++.++-|-+          ++                   
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~----------~~-------------------   59 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYK-------DNVKFAKVDC----------DE-------------------   59 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTT-------TTSEEEEEET----------TT-------------------
T ss_pred             cCCCEEEEEeCCCCCccccccceecccccccc-------cccccchhhh----------hc-------------------
Confidence            3699999999999999887  34555544442       2444444421          11                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                            -+.+.+.|++++.|+++++...+.+
T Consensus        60 ------~~~l~~~~~v~~~Pt~~~~~~g~~~   84 (103)
T PF00085_consen   60 ------NKELCKKYGVKSVPTIIFFKNGKEV   84 (103)
T ss_dssp             ------SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred             ------cchhhhccCCCCCCEEEEEECCcEE
Confidence                  1335677899999999999755444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=90.61  E-value=0.81  Score=47.63  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=44.9

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ++.++++|.+.||++|..  +.+.++.++++       +.  |.+.-+ |       .++.                   
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~--v~~~~V-D-------~~~~-------------------   95 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQ--VNVADL-D-------ATRA-------------------   95 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CC--eEEEEe-c-------Cccc-------------------
Confidence            478999999999999874  55666666553       22  333322 3       1110                   


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                            ..+.++|++++.|++++++ +|+++
T Consensus        96 ------~~l~~~~~I~~~PTl~~f~-~G~~v  119 (224)
T PTZ00443         96 ------LNLAKRFAIKGYPTLLLFD-KGKMY  119 (224)
T ss_pred             ------HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence                  1356788999999999998 78765

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=90.29  E-value=0.69  Score=42.54  Aligned_cols=66  Identities=14%  Similarity=0.301  Sum_probs=43.3

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ++.|.++|.+.||++|..  +.|.++-++.        .+  +.|+-| |       .++                    
T Consensus        22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--------~~--i~f~~V-d-------~~~--------------------   63 (113)
T cd02989          22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH--------LE--TKFIKV-N-------AEK--------------------   63 (113)
T ss_pred             CCcEEEEEECCCCccHHHHHHHHHHHHHHc--------CC--CEEEEE-E-------ccc--------------------
Confidence            578999999999999985  3444443322        12  344433 2       111                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           ...+.+.|+++++|+++++. +|+++.
T Consensus        64 -----~~~l~~~~~v~~vPt~l~fk-~G~~v~   89 (113)
T cd02989          64 -----APFLVEKLNIKVLPTVILFK-NGKTVD   89 (113)
T ss_pred             -----CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence                 12356788999999999987 777663

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=90.11  E-value=2.9  Score=40.56  Aligned_cols=103  Identities=12%  Similarity=0.045  Sum_probs=62.5

Q ss_pred             CCceeecce-ecCcEEEEEEecC-C--CChhH-HHHHHHHHHHHhhcccCCCCCe-EEEEEecccCCCCcChhhHHHHHH
Q 005245          335 TKRKVSIDV-LRRKSVLLLVSDL-D--VSNEE-LFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       335 ~~~kV~Is~-L~gK~VlL~fSal-~--~~~~e-~~~L~~iY~elk~~~~~~~~~f-EIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +|..|.+++ ++||.|.|||=-. |  .|.-| +..|.+.|+++++      .+. +|+=||. |     +-...++|.+
T Consensus        17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~   84 (155)
T cd03013          17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK   84 (155)
T ss_pred             CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence            477899999 6887666666554 4  44556 7789999999973      346 5888875 3     2445666765


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCC------C-----CcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------K-----KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~-----iP~LVvL~pqGkv~~~  456 (706)
                      -..-.    ++|+=+.|.  -+.+.+.|++.      +     ....+|+| +|++...
T Consensus        85 ~~~~~----~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~  136 (155)
T cd03013          85 ALGAK----DKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL  136 (155)
T ss_pred             hhCCC----CcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence            44431    122211122  13344444541      1     46678889 6998754

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=89.75  E-value=1.9  Score=37.52  Aligned_cols=64  Identities=20%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      |+.++++|.+.||++|+  .+.++++++.+.   -.+++.++||-          .++  |.                  
T Consensus        12 ~~~~~~~f~~~~~~~~~--~~~~~~~~vA~~---~~~~v~f~~vd----------~~~--~~------------------   56 (103)
T cd02982          12 GKPLLVLFYNKDDSESE--ELRERFKEVAKK---FKGKLLFVVVD----------ADD--FG------------------   56 (103)
T ss_pred             CCCEEEEEEcCChhhHH--HHHHHHHHHHHH---hCCeEEEEEEc----------hHh--hH------------------
Confidence            88999999999987654  344444444321   12457888873          232  11                  


Q ss_pred             HHHHHHHHHhhCCC--CCcEEEEECC
Q 005245          426 PAVIRYAKEKWDFR--KKPILVVLDP  449 (706)
Q Consensus       426 ~~~~r~ike~~~~~--~iP~LVvL~p  449 (706)
                           .+.+.|+++  +.|++++++.
T Consensus        57 -----~~~~~~~i~~~~~P~~~~~~~   77 (103)
T cd02982          57 -----RHLEYFGLKEEDLPVIAIINL   77 (103)
T ss_pred             -----HHHHHcCCChhhCCEEEEEec
Confidence                 134556888  9999999987

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=89.72  E-value=1.7  Score=36.26  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=23.6

Q ss_pred             EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEe
Q 005245          350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLP  390 (706)
Q Consensus       350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIp  390 (706)
                      ..+|++.||++|..  +.|.++.++.+       .+++++.|-
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd   38 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYIN   38 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEe
Confidence            45678899999885  56777766653       347777774

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=89.52  E-value=0.99  Score=44.27  Aligned_cols=39  Identities=5%  Similarity=-0.077  Sum_probs=25.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEE
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWL  389 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwI  389 (706)
                      +++.|+++|.+.||++|..  +.|.++.++..      +.++.++-|
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~------~~~v~f~~V   86 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYN------NNNLKFGKI   86 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc------cCCeEEEEE
Confidence            3679999999999999884  34544444432      234555555

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PTZ00062 glutaredoxin; Provisional

Probab=89.46  E-value=0.7  Score=47.48  Aligned_cols=127  Identities=12%  Similarity=0.174  Sum_probs=75.6

Q ss_pred             cEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245          347 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP  426 (706)
Q Consensus       347 K~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~  426 (706)
                      +.+.|||++.||++|.  .+..+.++|.+..      -+|.|+.+        |++                        
T Consensus        18 g~~vl~f~a~w~~~C~--~m~~vl~~l~~~~------~~~~F~~V--------~~d------------------------   57 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYE--QLMDVCNALVEDF------PSLEFYVV--------NLA------------------------   57 (204)
T ss_pred             CcEEEEEeCCCCcchH--HHHHHHHHHHHHC------CCcEEEEE--------ccc------------------------
Confidence            4579999999999998  5677777776421      24777765        322                        


Q ss_pred             HHHHHHHHhhCCCCCcEEEEECCCCcee----cccHHHHH---HHhCcccccCChhhHHHhhhhcccccccccccCCCCc
Q 005245          427 AVIRYAKEKWDFRKKPILVVLDPQGRVV----NQNALHMM---WIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVI  499 (706)
Q Consensus       427 ~~~r~ike~~~~~~iP~LVvL~pqGkv~----~~nA~~mI---~~wG~~AFPFT~~r~eeL~~~e~w~lelLvd~id~~I  499 (706)
                               |++.++|++|++. +|+.+    ..|+..+.   ..|-..     .. .++               +.-.+
T Consensus        58 ---------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~~~---------------~~~~v  106 (204)
T PTZ00062         58 ---------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-SED---------------TVEKI  106 (204)
T ss_pred             ---------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-HHH---------------HHHHH
Confidence                     6999999999995 55554    44554432   122110     00 000               11122


Q ss_pred             cccccCceEEEEE--ccCChhHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245          500 PTWIMEQKHICLY--GGEDLEWVRKFTALMGAVARAAGIALEMLYVGKS  546 (706)
Q Consensus       500 ~~~i~egK~I~LY--gg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkd  546 (706)
                      .++|+. +-|.||  |.....|| .|..++..+-+..+++++.+-|.+|
T Consensus       107 ~~li~~-~~Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d  153 (204)
T PTZ00062        107 ERLIRN-HKILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED  153 (204)
T ss_pred             HHHHhc-CCEEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC
Confidence            333333 334444  43344577 5566666665666999998888765

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=89.02  E-value=0.75  Score=42.68  Aligned_cols=50  Identities=22%  Similarity=0.395  Sum_probs=37.7

Q ss_pred             CceEEEEEccCChhHH---HHHHHHHHHHHHHhC---CceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAG---IALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~---~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|||.+  .||   ++..+.+.+++++.+   ..+++++|+-|...+.+++.+
T Consensus        16 ~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~   71 (132)
T cd02964          16 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYF   71 (132)
T ss_pred             CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence            89999999998  675   777788888766432   379999999886555554433

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=88.52  E-value=2  Score=42.76  Aligned_cols=88  Identities=15%  Similarity=0.133  Sum_probs=56.3

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      ++.|.++|++.||++|..  |.+++++|...    -  -+|.|+-|        |.++                      
T Consensus        83 ~~~VVV~Fya~wc~~Ck~--m~~~l~~LA~~----~--~~vkF~kV--------d~d~----------------------  124 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAA--LNSSLLCLAAE----Y--PAVKFCKI--------RASA----------------------  124 (175)
T ss_pred             CcEEEEEEECCCCchHHH--HHHHHHHHHHH----C--CCeEEEEE--------eccc----------------------
Confidence            459999999999999984  45555666432    1  14777765        2221                      


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHh
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEAL  480 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL  480 (706)
                       .   .+.+.|+++.+|+++++- +|+.+.. -+.. ...|..  -|+.+++|..
T Consensus       125 -~---~l~~~f~v~~vPTlllyk-~G~~v~~-~vG~-~~~~g~--~f~~~~le~~  170 (175)
T cd02987         125 -T---GASDEFDTDALPALLVYK-GGELIGN-FVRV-TEDLGE--DFDAEDLESF  170 (175)
T ss_pred             -h---hhHHhCCCCCCCEEEEEE-CCEEEEE-Eech-HHhcCC--CCCHHHHHHH
Confidence             0   345667999999999886 5877742 1221 234444  6777777654

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>smart00594 UAS UAS domain

Probab=88.30  E-value=2  Score=39.84  Aligned_cols=68  Identities=15%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             ecCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          344 LRRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      =+||.+++||.+.||++|....     =.++-+-++       .+  .|.+.. |    +++.                 
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~--fv~~~~-d----v~~~-----------------   73 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------EN--FIFWQV-D----VDTS-----------------   73 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cC--EEEEEe-c----CCCh-----------------
Confidence            4689999999999998877642     122333332       12  344332 2    1211                 


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCC
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQG  451 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqG  451 (706)
                              ++ ..+.+.+++.+-|.++++||+|
T Consensus        74 --------eg-~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       74 --------EG-QRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             --------hH-HHHHHhcCcCCCCEEEEEecCC
Confidence                    12 3466678999999999999997

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=88.20  E-value=2  Score=38.14  Aligned_cols=72  Identities=14%  Similarity=0.037  Sum_probs=46.6

Q ss_pred             cceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      ++.|++..-..+|.+.||+.|.  .+.++.+++.+.    ..++++..+-+        |+..                 
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~--~~~~~~~~l~~~----~~~i~~~~vd~--------~~~~-----------------   55 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCP--DVVQALNLMAVL----NPNIEHEMIDG--------ALFQ-----------------   55 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcH--HHHHHHHHHHHH----CCCceEEEEEh--------HhCH-----------------
Confidence            3478899888999999999987  455666777643    12344444421        2111                 


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                                .+.+++++.++|++|+   +|+++..
T Consensus        56 ----------e~a~~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          56 ----------DEVEERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             ----------HHHHHcCCccCCEEEE---CCEEEEe
Confidence                      1234679999999986   6877763

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.87  E-value=2.3  Score=43.65  Aligned_cols=104  Identities=15%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             ceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCC
Q 005245          337 RKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM  413 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~M  413 (706)
                      .+|..++..||.+.|||=-.|   .||-|+..+...|++.++      .+-||+-||+ |+     .....+..+--..-
T Consensus        24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-Ds-----~fsH~aW~~~~~~~   91 (194)
T COG0450          24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-DS-----VFSHKAWKATIREA   91 (194)
T ss_pred             eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-Cc-----HHHHHHHHhcHHhc
Confidence            489999999999999999888   788899999999999984      4599999986 42     22233333321111


Q ss_pred             Ccee-eccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCcee
Q 005245          414 PWFS-VHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVV  454 (706)
Q Consensus       414 PWyA-Vpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~  454 (706)
                      .=+. |+||-.  ....+.|.+.|++-.      .=.+.|+||+|++-
T Consensus        92 ~gi~~i~~Pmi--aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir  137 (194)
T COG0450          92 GGIGKIKFPMI--ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR  137 (194)
T ss_pred             CCccceecceE--EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence            1111 556532  234566777778754      23578999999874

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=87.40  E-value=0.81  Score=43.22  Aligned_cols=91  Identities=12%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CccccCCCCcee-ecce-----ec-CcEEEEEEecCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCc
Q 005245          328 LPLVECPTKRKV-SIDV-----LR-RKSVLLLVSDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW  398 (706)
Q Consensus       328 ~pl~dg~~~~kV-~Is~-----L~-gK~VlL~fSal~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w  398 (706)
                      .|-|||.....+ .=+.     .+ .+.|+++|-+.||+|  |....+..+..++.+.- -..++  |.++-+ |     
T Consensus         2 ~~~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~-l~~~~--v~~~kV-D-----   72 (120)
T cd03065           2 FPEYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV-LEDKG--IGFGLV-D-----   72 (120)
T ss_pred             CcccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH-hhcCC--CEEEEE-e-----
Confidence            477888764331 1121     22 347888888888877  77433333333332110 00223  555543 2     


Q ss_pred             ChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          399 TEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       399 ~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                        .++                         -.-|.++|+++++|+|+++- +|+.+.
T Consensus        73 --~d~-------------------------~~~La~~~~I~~iPTl~lfk-~G~~v~  101 (120)
T cd03065          73 --SKK-------------------------DAKVAKKLGLDEEDSIYVFK-DDEVIE  101 (120)
T ss_pred             --CCC-------------------------CHHHHHHcCCccccEEEEEE-CCEEEE
Confidence              222                         13455678999999999995 888664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=86.42  E-value=2.2  Score=39.54  Aligned_cols=73  Identities=15%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|.+.|+|.||+||..  +...|++|..    .-.+  ++|+=+        |-|+                      
T Consensus        21 ~kliVvdF~a~wCgPCk~--i~P~~~~La~----~y~~--v~Flkv--------dvde----------------------   62 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKA--IAPKFEKLAE----KYPD--VVFLKV--------DVDE----------------------   62 (106)
T ss_pred             CCeEEEEEECCCCcchhh--hhhHHHHHHH----HCCC--CEEEEE--------eccc----------------------
Confidence            799999999999999985  5667778763    2233  666643        2222                      


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECC---CCceecccHH
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDP---QGRVVNQNAL  459 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~p---qGkv~~~nA~  459 (706)
                         ..-+.+.|+++..|+++.+-.   .++++..|..
T Consensus        63 ---~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~   96 (106)
T KOG0907|consen   63 ---LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA   96 (106)
T ss_pred             ---CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence               334556789999999999932   2455555544

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=86.36  E-value=1.3  Score=40.80  Aligned_cols=55  Identities=20%  Similarity=0.354  Sum_probs=40.6

Q ss_pred             CCccccccCceEEEEEccCChhH---HHHHHHHHHHHHHHh---CCceeEEEeccCCchhhhhhh
Q 005245          497 PVIPTWIMEQKHICLYGGEDLEW---VRKFTALMGAVARAA---GIALEMLYVGKSNPKEKARRI  555 (706)
Q Consensus       497 ~~I~~~i~egK~I~LYgg~d~~W---ir~FT~~l~~I~~~~---~~~~E~v~Vgkdn~~e~v~~~  555 (706)
                      ..+++.  .||++.|||.+  .|   |++..+.+.+++++.   +..+++++|+-|...+.+++-
T Consensus        11 v~l~~~--~gk~vll~Fwa--~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~   71 (131)
T cd03009          11 VPVSSL--EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDY   71 (131)
T ss_pred             ccHHHh--CCcEEEEEEEC--CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHH
Confidence            344444  79999999998  56   488888888776642   347999999999776665543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=86.22  E-value=3.4  Score=35.71  Aligned_cols=29  Identities=14%  Similarity=0.070  Sum_probs=23.3

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHh
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESR  374 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk  374 (706)
                      ||.|+|+|.+.||++|..  +.+.++.++++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~   48 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLK   48 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhc
Confidence            589999999999998875  56777776664

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PTZ00102 disulphide isomerase; Provisional

Probab=85.32  E-value=1.9  Score=48.07  Aligned_cols=70  Identities=13%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +++.++++|-+.||++|..  +.+.++.++++.      ....|++..+ |.       ++                   
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~------~~~~i~~~~v-d~-------~~-------------------   94 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE------KKSEIVLASV-DA-------TE-------------------   94 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh------cCCcEEEEEE-EC-------CC-------------------
Confidence            4789999999999999875  457777777652      2346777765 31       11                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                            -+.+.++|++++.|+++++...+.+
T Consensus        95 ------~~~l~~~~~i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102         95 ------EMELAQEFGVRGYPTIKFFNKGNPV  119 (477)
T ss_pred             ------CHHHHHhcCCCcccEEEEEECCceE
Confidence                  1236677899999999999876554

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=85.28  E-value=2.2  Score=40.07  Aligned_cols=70  Identities=11%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             CcEEEEEEecCC--CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLD--VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~--~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      |..+.|+|++.|  ||+|.-  +..+.+++.+.   -++...++-|=+        |++                     
T Consensus        27 ~~~~v~~f~~~~~~cp~c~~--i~P~leela~e---~~~~v~f~kVdi--------d~~---------------------   72 (111)
T cd02965          27 GGDLVLLLAGDPVRFPEVLD--VAVVLPELLKA---FPGRFRAAVVGR--------ADE---------------------   72 (111)
T ss_pred             CCCEEEEecCCcccCcchhh--hHhHHHHHHHH---CCCcEEEEEEEC--------CCC---------------------
Confidence            467788899997  888775  33344444321   123344444421        111                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                            ..|.++|+++++|+|+++- +|+.+..
T Consensus        73 ------~~la~~f~V~sIPTli~fk-dGk~v~~   98 (111)
T cd02965          73 ------QALAARFGVLRTPALLFFR-DGRYVGV   98 (111)
T ss_pred             ------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence                  1456778999999999986 6776643

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=84.28  E-value=2.7  Score=39.10  Aligned_cols=30  Identities=10%  Similarity=-0.027  Sum_probs=22.1

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHH
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRES  373 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~el  373 (706)
                      -.+|.|++.|.|.||++|..  +.+.++-+++
T Consensus        27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~   58 (113)
T cd03006          27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL   58 (113)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            46789999999999999875  3444444444

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=84.03  E-value=6.1  Score=28.87  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=39.6

Q ss_pred             EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHH
Q 005245          350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA  427 (706)
Q Consensus       350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~  427 (706)
                      +++|.+.||+.|..  ..+.++ .       ....++.++++++-+      +.+...+                     
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~-------~~~~~~~~~~~~~~~------~~~~~~~---------------------   45 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-A-------LLNKGVKFEAVDVDE------DPALEKE---------------------   45 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-H-------hhCCCcEEEEEEcCC------ChHHhhH---------------------
Confidence            36788888877766  345555 1       134579999998622      1111111                     


Q ss_pred             HHHHHHHhhCCCCCcEEEEECCC
Q 005245          428 VIRYAKEKWDFRKKPILVVLDPQ  450 (706)
Q Consensus       428 ~~r~ike~~~~~~iP~LVvL~pq  450 (706)
                           ...+++...|.+++.+++
T Consensus        46 -----~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659          46 -----LKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             -----HHhCCCccccEEEEEeCC
Confidence                 455788899999999887

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=83.71  E-value=5.8  Score=33.89  Aligned_cols=16  Identities=25%  Similarity=0.368  Sum_probs=14.1

Q ss_pred             hCCCCCcEEEEECCCCcee
Q 005245          436 WDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       436 ~~~~~iP~LVvL~pqGkv~  454 (706)
                      +++.++|++++   +|+++
T Consensus        45 ~~v~~vPti~i---~G~~~   60 (76)
T TIGR00412        45 AGVTATPGVAV---DGELV   60 (76)
T ss_pred             cCCCcCCEEEE---CCEEE
Confidence            69999999999   88777

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=83.48  E-value=3  Score=45.80  Aligned_cols=68  Identities=16%  Similarity=0.147  Sum_probs=47.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.++++|.|.||++|..  +.+.++.+.++.    .+.  .|.|+-+ |       .++                   
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~--~v~~~~v-d-------~~~-------------------   63 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGP--PIKLAKV-D-------ATE-------------------   63 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCC--ceEEEEE-E-------CCC-------------------
Confidence            4678999999999998876  578888887763    222  3555544 2       221                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                            -+.+.+++++++.|+++++. +|+
T Consensus        64 ------~~~l~~~~~i~~~Pt~~~~~-~g~   86 (462)
T TIGR01130        64 ------EKDLAQKYGVSGYPTLKIFR-NGE   86 (462)
T ss_pred             ------cHHHHHhCCCccccEEEEEe-CCc
Confidence                  12356778999999999996 444

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=83.43  E-value=7.1  Score=36.51  Aligned_cols=53  Identities=15%  Similarity=0.261  Sum_probs=43.5

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEecc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIV  392 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiV  392 (706)
                      .+|+.|+++.++||.+++.=-|.-|.-- ....|.++|++.+.      ..|+|+-.|.-
T Consensus         9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn   62 (108)
T PF00255_consen    9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN   62 (108)
T ss_dssp             TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred             CCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence            3678999999999999999989887543 33479999999973      35999999984

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=82.80  E-value=3.4  Score=39.38  Aligned_cols=73  Identities=12%  Similarity=0.209  Sum_probs=39.5

Q ss_pred             eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      .+.++.-.|.|...||+.|..  |.|..+=+..        .+.++=+|+-        |+..+-.+.+.          
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--------p~i~~~~i~r--------d~~~el~~~~l----------   91 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNVPVLAKIAEAN--------PNIEVRIILR--------DENKELMDQYL----------   91 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH---------TTEEEEEE-H--------HHHHHHTTTTT----------
T ss_pred             hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC--------CCCeEEEEEe--------cCChhHHHHHH----------
Confidence            455677899999999988665  6787776653        1466666643        54443332211          


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                  .  .+.+.||++|++|.+|+++.
T Consensus        92 ------------t--~g~~~IP~~I~~d~~~~~lg  112 (129)
T PF14595_consen   92 ------------T--NGGRSIPTFIFLDKDGKELG  112 (129)
T ss_dssp             ------------T---SS--SSEEEEE-TT--EEE
T ss_pred             ------------h--CCCeecCEEEEEcCCCCEeE
Confidence                        1  36778999999999999873

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=82.26  E-value=3.6  Score=45.19  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEe
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLP  390 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIp  390 (706)
                      .+|.|+++|.+.||++|..  +.+.++.+.++.    ...++.++.|-
T Consensus       363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~i~~~~id  406 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD----AESDVVIAKMD  406 (462)
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc----CCCcEEEEEEE
Confidence            4899999999999999875  567777666651    12357777763

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=80.90  E-value=9.8  Score=40.06  Aligned_cols=102  Identities=11%  Similarity=0.225  Sum_probs=55.1

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEe--cccCCC------CcChhhH-HHHHHhhcCCCc
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLP--IVDRST------PWTEAKE-HKFEALQYMMPW  415 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIp--iVd~s~------~w~D~de-~~Fe~~~~~MPW  415 (706)
                      .+|++...||+.+||-|.-.     +.++++..  ..++.+|.|+|  +..+..      -|...|+ +.++.+.....-
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl-----~~~l~~~~--~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~  188 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQF-----WQQARPWV--DSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK  188 (251)
T ss_pred             CCCeEEEEEECCCChhHHHH-----HHHHHHHh--hcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence            47888999999999998653     22332111  12346666666  332211      1333333 334444433322


Q ss_pred             eeeccCCCCCHHHHHH------HHHhhCCCCCcEEEEECCCCce
Q 005245          416 FSVHHPSAIDPAVIRY------AKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       416 yAVpf~~~id~~~~r~------ike~~~~~~iP~LVvL~pqGkv  453 (706)
                      -.+......+.+..+.      +-+.++++|-|++|+.|.+|++
T Consensus       189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~  232 (251)
T PRK11657        189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL  232 (251)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            1111111112223333      4478999999999999999984

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=80.58  E-value=2.3  Score=43.28  Aligned_cols=127  Identities=18%  Similarity=0.289  Sum_probs=85.5

Q ss_pred             CccccCCCCceeecceecCcEEEEEEecCC---CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH
Q 005245          328 LPLVECPTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH  404 (706)
Q Consensus       328 ~pl~dg~~~~kV~Is~L~gK~VlL~fSal~---~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~  404 (706)
                      .-+.|| .-+.++++.++||+|+|+|=.++   .||.|+.....-|.+.+.      -+-||+.+|. ||          
T Consensus        16 ~aVVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~-DS----------   77 (196)
T KOG0852|consen   16 TAVVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST-DS----------   77 (196)
T ss_pred             eEEEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec-cc----------
Confidence            346677 44589999999999999998888   779999999999999973      4689999985 32          


Q ss_pred             HHHHhhcCCCceeeccCCC--------CCHHHHHHHHHhhCC----CCCc--EEEEECCCCceec------------ccH
Q 005245          405 KFEALQYMMPWFSVHHPSA--------IDPAVIRYAKEKWDF----RKKP--ILVVLDPQGRVVN------------QNA  458 (706)
Q Consensus       405 ~Fe~~~~~MPWyAVpf~~~--------id~~~~r~ike~~~~----~~iP--~LVvL~pqGkv~~------------~nA  458 (706)
                          .|+-.-|-+.|-...        +=....+.|.+.+++    .|++  -|.++|++|.+-.            ..+
T Consensus        78 ----~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~  153 (196)
T KOG0852|consen   78 ----VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDET  153 (196)
T ss_pred             ----hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHH
Confidence                223344555543110        001245667777776    4554  4888898886532            234


Q ss_pred             HHHHHHhCcccccCChhhHHHhh
Q 005245          459 LHMMWIWGSVAFPFSVAREEALW  481 (706)
Q Consensus       459 ~~mI~~wG~~AFPFT~~r~eeL~  481 (706)
                      +.+|     +||-||.+..|-.-
T Consensus       154 lRLv-----qAfQ~td~~geVcP  171 (196)
T KOG0852|consen  154 LRLV-----QAFQFTDEHGEVCP  171 (196)
T ss_pred             HHHH-----HHHhhhhccCcccc
Confidence            4444     67888776665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	706
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 5e-12
 Identities = 103/675 (15%), Positives = 194/675 (28%), Gaps = 182/675 (26%)

Query: 75  DVLDDKAFQSGF---FDMLDLLSSTINRISCEISCKCSGGGDAHATTLGIFNIVTSYSWD 131
           D+L    F+  F   FD  D+     + +S E         DA + TL +F  + S   +
Sbjct: 20  DILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 132 AKVVLALAAFALNYGEFWVVAQL--FPVNPLAKSVALLKQLPEILERADTMKP----RFE 185
                      +NY   ++++ +      P   +   ++Q   +             R +
Sbjct: 78  MVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 186 TLSNLITAMLDLTKCIVEVKELPSDYI-------------TPDTPEMAAVTAHIPTAVYW 232
               L  A+L+L          P+  +               D      V   +   ++W
Sbjct: 136 PYLKLRQALLELR---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 233 IIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIEEK 292
                          + + +                +   ++   L    KL +Q+    
Sbjct: 187 ---------------LNLKNC---------------NSPETV---LEMLQKLLYQIDPNW 213

Query: 293 RQIESYQALVRLMETIHIDNMK-VLNRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLL 351
                + + ++L     I +++  L RLL        P   C                 L
Sbjct: 214 TSRSDHSSNIKL----RIHSIQAELRRLLKSK-----PYENC-----------------L 247

Query: 352 LVSDLDVSNEEL---FLLE-QMYRESRQLS-SRTESQYEVVWLPIVDRSTPWTEAKEHKF 406
           LV   +V N +    F L  ++   +R    +   S      + +   S   T       
Sbjct: 248 LVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----- 301

Query: 407 EALQYMMPWFSV-----------HHPSAID--PAVIRYAKEKWDFRKKPILVVLDPQGRV 453
           E    ++ +               +P  +      IR     WD  K             
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH------------ 349

Query: 454 VNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYG 513
           VN + L  + I  S+        E A +++   R+ +   S    IPT ++      ++ 
Sbjct: 350 VNCDKLTTI-IESSLN-----VLEPAEYRKMFDRLSVFPPSAH--IPTILLSL----IWF 397

Query: 514 GEDLEWVRKFTALM---GAVARAA--------GIALEMLYVGKSNPKEKA--RRIISTIS 560
                 V      +     V +           I LE+         E A  R I+   +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYN 454

Query: 561 VEK---LSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGS---D 614
           + K       +P     +F+        H  +K     ++  + + +     F       
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYS---HIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 615 QGWAVISRGPHMAKAKDETILKCLTEYTTWEPNVPE-KSFVVAMNDYL---NEN--RTPY 668
              A  + G  +   +    LK    Y     N P+ +  V A+ D+L    EN   + Y
Sbjct: 510 DSTAWNASGSILNTLQQ---LKFYKPYIC--DNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 669 HC-NRLILPGEAGRI 682
               R+ L  E   I
Sbjct: 565 TDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 3e-06
 Identities = 77/545 (14%), Positives = 146/545 (26%), Gaps = 179/545 (32%)

Query: 262 WELSSLAHKINSIYNHLLQQLKL---CHQLIEEKRQIESYQALVRLMETIHIDNMKVLNR 318
           +E     ++   I +           C  + +  + I S +      E  HI   K    
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE------EIDHIIMSK---- 58

Query: 319 LLIHTKDDQLPLVECPTKRKVSIDVLRRKS---VLLLVSDLDVSNEELFLLEQMYRESRQ 375
                       +            L  K    V   V ++   N + FL+  +  E RQ
Sbjct: 59  ----DAVSGTLRL---------FWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQ 104

Query: 376 LSSRTE---SQYEVVW--LPI-----VDRSTPWTEAKEH--------------------- 404
            S  T     Q + ++    +     V R  P+ + ++                      
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 405 -------KFEALQYMMP----WFSV---HHPSA-----------IDPAV---------IR 430
                      +Q  M     W ++   + P             IDP           I+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 431 YAKEKWDFRKKPI---------LVVLDPQGRVVNQNALHMMWIWGSVAFPFS----VARE 477
                     + +         L+VL     V  QNA      W   AF  S    +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLL---NV--QNA----KAWN--AFNLSCKILL--- 270

Query: 478 EALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTA--LMGAVARAAG 535
                  T R   + D +            HI L   +        T   +   + +   
Sbjct: 271 -------TTRFKQVTDFLSAA------TTTHISL---DHHSMT--LTPDEVKSLLLKYLD 312

Query: 536 IALEMLYVGKSNPKEKARRI----ISTISVEKLSHTLPDPTLIWFFWVRLESMWHSK-MK 590
              + L      P+E         +S I+       + D    W  W  +     +  ++
Sbjct: 313 CRPQDL------PRE-VLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTIIE 360

Query: 591 FGTKVQQDPIMQEIVTMLS-F-DGSDQGWAVISRG-PHMAKAKDETILKCLTEYTTWEPN 647
               V +    +++   LS F   +     ++S     + K+    ++  L +Y+  E  
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 648 VPEKSFVVAMND-YL-----NENRTPYHCNRLILPGEAGRIPEKVVCAECGRRMEE---- 697
              K   +++   YL      EN    H   ++   +   IP+     +      +    
Sbjct: 421 --PKESTISIPSIYLELKVKLENEYALH-RSIV---DHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 698 -FIMY 701
             I +
Sbjct: 475 SHIGH 479

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 71/502 (14%), Positives = 133/502 (26%), Gaps = 186/502 (37%)

Query: 255 IISTTETWELSSLAHKINSIYN--HLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDN 312
           I+S  E          I+ I      +         +  K++ E  Q   + +E +   N
Sbjct: 45  ILSKEE----------IDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQ---KFVEEVLRIN 90

Query: 313 MKVL-NRLLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEELFL-----L 366
            K L + +    +   +       +R    D L   + +   +  +VS  + +L     L
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDNQVF--AKYNVSRLQPYLKLRQAL 144

Query: 367 EQMYRES--------------------RQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF 406
            ++                             + +  +++ WL + + ++P     E   
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-----ETVL 199

Query: 407 EALQYMMPWFSVHHPSAIDPAV-IRYAKEKWDFRKKPI---------LVVLDPQGRVVNQ 456
           E LQ ++     +  S  D +  I+          + +         L+VL     V  Q
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NV--Q 254

Query: 457 NALHMMWIWGSVAFPFS----VAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLY 512
           NA      W   AF  S    +          T R   + D +            HI L 
Sbjct: 255 NA----KAWN--AFNLSCKILL----------TTRFKQVTDFLSAA------TTTHISL- 291

Query: 513 GGEDLEWVRKFTA--LMGAVARAAGIALEMLYVGKSNPKEKARRI----ISTISVEKLSH 566
             +        T   +   + +      + L      P+E         +S I+      
Sbjct: 292 --DHHSMT--LTPDEVKSLLLKYLDCRPQDL------PRE-VLTTNPRRLSIIAES---- 336

Query: 567 TLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHM 626
            + D    W  W                V  D +   I                      
Sbjct: 337 -IRDGLATWDNW--------------KHVNCDKLTTII---------------------- 359

Query: 627 AKAKDETILKCLTEYTTWEPNVPEKSFVVAMNDYLNENRTPYHCNRL-ILPGEAGRIPEK 685
                E+ L  L      EP                E R  +   RL + P  A  IP  
Sbjct: 360 -----ESSLNVL------EPA---------------EYRKMFD--RLSVFPPSA-HIPTI 390

Query: 686 VVC---AECGRRMEEFIMYRCC 704
           ++     +  +     ++ +  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLH 412

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	706
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.44
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.43
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.41
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.4
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.65
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.03
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.02
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.97
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.97
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.94
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.93
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.85
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.83
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.82
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.79
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.76
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.75
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.75
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.71
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.69
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.68
3me7_A	170	Putative uncharacterized protein; electron transfe	98.67
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.66
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.66
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.64
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.64
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.62
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.62
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.6
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.59
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.59
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.59
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.58
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.58
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.57
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.57
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.56
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.56
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.55
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.55
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.54
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.94
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.53
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.53
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.53
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.53
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.52
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.52
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.5
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.49
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.47
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.46
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.46
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.43
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.41
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.4
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.39
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.38
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.38
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.37
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.37
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.37
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.35
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.35
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.34
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.34
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.32
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.32
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.3
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	98.29
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.28
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.28
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.25
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.22
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.2
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.2
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.19
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.17
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.14
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.12
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.11
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.08
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.05
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.04
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.02
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.02
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.97
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.96
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.96
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.96
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.9
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.82
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	97.8
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.79
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.77
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.73
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.73
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.73
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.71
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.7
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	97.69
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.68
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.62
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.61
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.45
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.32
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.29
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	97.28
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.26
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.26
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.23
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.22
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.2
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.2
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.17
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.16
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.15
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.13
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.13
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.12
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.1
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.08
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.06
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.05
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.04
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.02
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.01
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.01
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.0
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.0
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.98
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.95
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.94
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.92
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.91
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.91
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.96
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.89
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.89
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.89
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.89
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.87
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.85
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.85
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.85
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.85
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.85
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.84
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.82
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.82
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.79
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.79
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.77
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.77
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.71
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.71
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.7
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.69
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	96.68
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	96.67
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.65
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.62
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.62
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.62
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.58
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	96.56
1mek_A	120	Protein disulfide isomerase; electron transport, r	96.54
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.49
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.49
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.47
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.47
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.45
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	96.44
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.4
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.4
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.37
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	96.35
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.31
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	96.3
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.24
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.23
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.19
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.1
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.08
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.01
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	95.98
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	95.95
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	95.85
3ira_A	173	Conserved protein; methanosarcina mazei,structural	95.79
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	95.59
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	95.38
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.28
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	95.29
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	94.99
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	94.89
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	94.71
2qsi_A	137	Putative hydrogenase expression/formation protein;	94.57
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	94.33
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	94.24
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.21
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	93.81
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	93.77
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.7
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	93.5
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	93.45
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	93.07
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	93.06
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	92.84
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	92.43
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	92.04
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	91.22
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	91.0
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	90.89
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	90.4
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	90.22
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	89.85
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	89.81
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	89.45
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	89.41
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	89.27
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	88.74
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	88.26
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	88.01
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	87.83
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	87.36
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	85.95
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	85.93
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	85.32
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	85.26
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	85.06
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	83.92
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	83.89
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	83.87
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	83.83
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	83.58
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	83.56
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	82.62
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	82.56
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	82.5
2lrt_A	152	Uncharacterized protein; structural genomics, thio	82.08
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	81.55
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	81.1
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	80.59
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	80.4
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	80.3
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	80.22
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	80.14

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.44  E-value=7.4e-13  Score=124.30  Aligned_cols=125  Identities=20%  Similarity=0.330  Sum_probs=105.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+| .|.++.++||.|+|+|.+.||++|..  +.|.++|+++++     ..+++||.|++        |.+.+.+..+.
T Consensus        36 ~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-----~~~v~vv~v~~--------d~~~~~~~~~~  101 (165)
T 3s9f_A           36 KQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD-----SKNFEIILASW--------DEEEDDFNAYY  101 (165)
T ss_dssp             ETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CCSHHHHHHHH
T ss_pred             cCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhcc-----CCCeEEEEEec--------CCCHHHHHHHH
Confidence            3456 99999999999999999999988766  679999999962     34799999987        55667889999


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-CceecccHHHHHHHh-CcccccCCh
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQNALHMMWIW-GSVAFPFSV  474 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~nA~~mI~~w-G~~AFPFT~  474 (706)
                      ..++|+.+|+..   ......+.+.|++.++|+++++|++ |+++..++.+.+..- ....||+..
T Consensus       102 ~~~~~~~~~~~~---~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A          102 AKMPWLSIPFAN---RNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             TTCSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HhCCCcccccCc---hhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence            999999999965   3445788899999999999999998 999999998877554 456688864

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.43  E-value=1.3e-12  Score=117.94  Aligned_cols=125  Identities=17%  Similarity=0.327  Sum_probs=105.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++++.     ..+++||.|++        |.+.+...++.
T Consensus        15 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~-----~~~~~vv~v~~--------d~~~~~~~~~~   81 (144)
T 1i5g_A           15 KGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE-----KKNFEVMLISW--------DESAEDFKDYY   81 (144)
T ss_dssp             ETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CSSHHHHHHHH
T ss_pred             cCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-----CCCEEEEEEeC--------CCCHHHHHHHH
Confidence            4578899999999999999999999998865  679999999862     25799999986        44667888899


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEEC-CCCceecccHHHHHHHhCc-ccccCC
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLD-PQGRVVNQNALHMMWIWGS-VAFPFS  473 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT  473 (706)
                      ..++|..+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. ..||++
T Consensus        82 ~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~  143 (144)
T 1i5g_A           82 AKMPWLALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             TTCSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HhCCccccccCc---hHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence            999999999863   34456788899999999999999 9999999999999988874 457764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.41  E-value=2.8e-12  Score=115.08  Aligned_cols=124  Identities=19%  Similarity=0.325  Sum_probs=103.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+| .+.+++++||.|+|+|.+.||++|..  +.|.++|++++     ...+++||.|++        |.+.+.+..+.
T Consensus        16 ~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~-----~~~~~~vv~i~~--------d~~~~~~~~~~   81 (144)
T 1o73_A           16 SKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-----VAKNFEVVLISW--------DENESDFHDYY   81 (144)
T ss_dssp             CTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEEC--------CSSHHHHHHHH
T ss_pred             cCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhc-----cCCCEEEEEEeC--------CCCHHHHHHHH
Confidence            4567 99999999999999999999998865  67999999986     235799999986        44667888999


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEEC-CCCceecccHHHHHHHhCc-ccccCC
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLD-PQGRVVNQNALHMMWIWGS-VAFPFS  473 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT  473 (706)
                      ..++|+.+|+..   ......+.+.|++.++|+++++| ++|+++...+...+..-+. ..||+.
T Consensus        82 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W~  143 (144)
T 1o73_A           82 GKMPWLALPFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPWP  143 (144)
T ss_dssp             TTCSSEECCTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HhCCceEeeccc---hhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCCC
Confidence            999999999863   34456788899999999999999 8999999999998887764 446653

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.40  E-value=1.9e-12  Score=117.33  Aligned_cols=125  Identities=20%  Similarity=0.295  Sum_probs=104.3

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+| .+.+++++||.|+|+|.+.||++|..  +.|.++|++++.     ..+++||+|++        |.+.+.+.++.
T Consensus        16 ~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~-----~~~~~vv~v~~--------d~~~~~~~~~~   81 (146)
T 1o8x_A           16 RGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-----SKNFEVVFCTW--------DEEEDGFAGYF   81 (146)
T ss_dssp             ETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-----TTTEEEEEEEC--------CCSHHHHHHHH
T ss_pred             cCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhh-----cCCeEEEEEeC--------CCCHHHHHHHH
Confidence            3467 99999999999999999999998865  679999999862     34799999986        45677889999


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEEC-CCCceecccHHHHHHHhCc-ccccCCh
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLD-PQGRVVNQNALHMMWIWGS-VAFPFSV  474 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~-pqGkv~~~nA~~mI~~wG~-~AFPFT~  474 (706)
                      ..++|+.+|+..   ......+.+.|++.++|+++++| ++|+++..++...+..-+. .+||+.+
T Consensus        82 ~~~~~~~~~~~~---~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~  144 (146)
T 1o8x_A           82 AKMPWLAVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  144 (146)
T ss_dssp             TTCSSEECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             HHCCceeeccch---hhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCC
Confidence            999999999852   24456788899999999999999 8999999999988776663 5677753

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.65  E-value=1.3e-11  Score=110.02  Aligned_cols=115  Identities=16%  Similarity=0.237  Sum_probs=90.2

Q ss_pred             CCCceeecce-ecCc-EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDV-LRRK-SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~-L~gK-~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      .+|..+.+++ ++|| .|+|+|.+.||++|..  +.|.++|+++++    .+.+++||.|++        |.+.+...++
T Consensus        12 ~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~~v~~v~~--------d~~~~~~~~~   79 (143)
T 2lus_A           12 KNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD----DSAPFEIIFVSS--------DRSEDDMFQY   79 (143)
Confidence            4677899999 9999 9999999999998854  679999999863    245799999986        3333444444


Q ss_pred             hcC--CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHH
Q 005245          410 QYM--MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWI  464 (706)
Q Consensus       410 ~~~--MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~  464 (706)
                      ...  .+|..+|+.+    ...+.+.+.|++.+.|+++++|++|+++..++..-+..
T Consensus        80 ~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~  132 (143)
T 2lus_A           80 MMESHGDWLAIPYRS----GPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQS  132 (143)
Confidence            444  4899888854    34456778899999999999999999999888776553

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.03  E-value=6.6e-10  Score=102.25  Aligned_cols=107  Identities=13%  Similarity=0.270  Sum_probs=84.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|..  +.|.++|+++++      .+++||.|++        |..++....+.
T Consensus        22 ~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~------~~~~vv~i~~--------d~~~~~~~~~~   87 (152)
T 2lrt_A           22 DLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYAS------QGFEIYQISL--------DGDEHFWKTSA   87 (152)
T ss_dssp             BTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEC--------SCCHHHHHHHH
T ss_pred             cCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhcc------CCeEEEEEEc--------cCCHHHHHHHH
Confidence            4578899999999999999999999998864  789999999973      2599999986        33345556666


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      ..+||..+.-++    .....+.+.|++.+.|+.+++|++|+++...
T Consensus        88 ~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (152)
T 2lrt_A           88 DNLPWVCVRDAN----GAYSSYISLYNVTNLPSVFLVNRNNELSARG  130 (152)
T ss_dssp             TTCSSEEEECSS----GGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred             hCCCceEEECCC----CcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence            779988776543    2222456778999999999999999998753

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.02  E-value=4.1e-10  Score=101.40  Aligned_cols=106  Identities=13%  Similarity=0.159  Sum_probs=82.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHH---HHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQ---MYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~---iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      ..+|+.+.++.++||.|+|+|-+.||++|..  +.|.+   +|++.+.      .+++||.|+.        |.+.+.+.
T Consensus        18 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~------~~~~vi~i~~--------d~~~~~~~   83 (142)
T 3eur_A           18 LDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA------KKLKVLSIYP--------DEELDEWK   83 (142)
T ss_dssp             ETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT------TSEEEEEEEC--------SSCHHHHH
T ss_pred             cCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc------CCeEEEEEEc--------CCCHHHHH
Confidence            3578899999999999999999999988755  78999   9999972      4699999976        44445555


Q ss_pred             HhhcCC--CceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          408 ALQYMM--PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       408 ~~~~~M--PWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      .+...+  +|..+.-     ......+.+.|++.++|+++++|++|+++..+
T Consensus        84 ~~~~~~~~~~~~~~d-----~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           84 KHRNDFAKEWTNGYD-----KELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             HHGGGSCTTSEEEEC-----TTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             HHHHhcccccccccC-----ccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            555444  5655433     33334567889999999999999999999765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.97  E-value=6.4e-10  Score=100.24  Aligned_cols=109  Identities=13%  Similarity=0.057  Sum_probs=77.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.|+++.++||.|+|+|.+.||++|..  +.|.++|++.+      +.+++||.|++ |.    +.++-++|-+ .
T Consensus        19 ~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~------~~~~~vv~vs~-d~----~~~~~~~~~~-~   86 (143)
T 4fo5_A           19 LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFG------PDKIAMCSISM-DE----KESIFTETVK-I   86 (143)
T ss_dssp             -----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSC------TTTEEEEEEEC-CS----CHHHHHHHHH-H
T ss_pred             cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC------cCCEEEEEEEc-cC----CHHHHHHHHH-H
Confidence            3678899999999999999999999988766  57999998875      23799999986 21    1222333332 2


Q ss_pred             cCCCc-eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          411 YMMPW-FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPW-yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      ..++| ..+..+.    .....+.+.|++.++|+.+++|++|+++..+
T Consensus        87 ~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           87 DKLDLSTQFHEGL----GKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HTCCGGGEEECTT----GGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             hCCCCceeeeccc----ccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            46888 4443322    1234566778999999999999999998764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.97  E-value=4.8e-09  Score=95.44  Aligned_cols=109  Identities=18%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|..  +.|.++|++.+      +.+++||.|++ |.    +.+.-++|-.- 
T Consensus        16 ~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~------~~~~~vv~v~~-d~----~~~~~~~~~~~-   83 (152)
T 2lrn_A           16 DLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK------DKGFTIYGVST-DR----REEDWKKAIEE-   83 (152)
T ss_dssp             CSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHT------TTTEEEEEEEC-CS----CHHHHHHHHHH-
T ss_pred             cCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc------cCCeEEEEEEc-cC----CHHHHHHHHHH-
Confidence            3567899999999999999999999999865  67999999986      23699999986 21    12333334332 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      ..+||..+.-+    ......+.+.|++.+.|+++++|++|+++...
T Consensus        84 ~~~~~~~~~d~----~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           84 DKSYWNQVLLQ----KDDVKDVLESYCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             HTCCSEEEEEC----HHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred             hCCCCeEEecc----cchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence            36788766543    23356778889999999999999999998764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=4.9e-09  Score=95.18  Aligned_cols=108  Identities=12%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             CCCCceeecc--eecCcEEEEEEecCCCCh--hHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH
Q 005245          333 CPTKRKVSID--VLRRKSVLLLVSDLDVSN--EEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       333 g~~~~kV~Is--~L~gK~VlL~fSal~~~~--~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F  406 (706)
                      ..+|+.+.++  .++||.|+|+|-+.||++  |..  +.|.++|++.+     .+.+++||.|++        |.+.+..
T Consensus        18 ~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~-----~~~~~~~v~v~~--------d~~~~~~   84 (150)
T 3fw2_A           18 NAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYK-----KNKYIGMLGISL--------DVDKQQW   84 (150)
T ss_dssp             BTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHT-----TCSSEEEEEEEC--------CSCHHHH
T ss_pred             CCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhc-----cCCCeEEEEEEc--------CCCHHHH
Confidence            4678899999  999999999999999988  765  68999999983     234699999986        2223333


Q ss_pred             HHhh--cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          407 EALQ--YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       407 e~~~--~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      .++.  ..+||..+.-+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        85 ~~~~~~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           85 KDAIKRDTLDWEQVCDFG----GLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHHHHTTCCSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHHhCCCceEEEcCc----ccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence            3332  356777665432    2234667788999999999999999998765

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.93  E-value=1.4e-09  Score=97.20  Aligned_cols=104  Identities=16%  Similarity=0.224  Sum_probs=77.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHH---HHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQ---MYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~---iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.+   +|++.+.      .+++||.|++        |.+.+...
T Consensus        14 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~------~~~~~v~v~~--------d~~~~~~~   79 (142)
T 3ewl_A           14 TVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN------GTLRVLAIYP--------DENREEWA   79 (142)
T ss_dssp             CTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH------TSEEEEEEEC--------SSCHHHHH
T ss_pred             CCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc------CCeEEEEEEe--------cCCHHHHH
Confidence            4578899999999999999999999999866  56777   8998863      3599999986        33444455


Q ss_pred             HhhcC--CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          408 ALQYM--MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       408 ~~~~~--MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      .+...  ++|..+.-     ....-...+.|++.+.|+++++|++|+++.
T Consensus        80 ~~~~~~~~~~~~~~d-----~~~~~~~~~~~~v~~~P~~~lid~~G~i~~  124 (142)
T 3ewl_A           80 TKAVYMPQGWIVGWN-----KAGDIRTRQLYDIRATPTIYLLDGRKRVIL  124 (142)
T ss_dssp             HHHTTSCTTCEEEEC-----TTCHHHHTTCSCCCSSSEEEEECTTCBEEE
T ss_pred             HHHHHcCCCcceeeC-----CccchhhHHHcCCCCCCeEEEECCCCCEEe
Confidence            54444  45544433     222222245899999999999999999986

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.85  E-value=3.8e-08  Score=89.74  Aligned_cols=114  Identities=11%  Similarity=0.098  Sum_probs=86.0

Q ss_pred             CCCceeecceecCcEEEEEEecCCCCh-hHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSN-EEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.+.+++++||.|+|+|.+.||++ |..  +.|.++|+++++.+  ...+++||+|++ |... -+.+.-++|-+-+
T Consensus        11 ~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~--~~~~~~vv~vs~-d~~~-d~~~~~~~~~~~~   86 (164)
T 2ggt_A           11 HTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT--TLPDLTPLFISI-DPER-DTKEAIANYVKEF   86 (164)
T ss_dssp             TTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSS--SSCCEEEEEEES-CTTT-CCHHHHHHHHHTT
T ss_pred             CCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhcc--CCCcEEEEEEEe-CCCC-CCHHHHHHHHHHc
Confidence            568899999999999999999999997 755  78999999997421  124899999987 4210 0123345565433


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------------EEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------------~LVvL~pqGkv~~~  456 (706)
                       .++|..+.-    +....+.+.+.|++...|               ..+++|++|+++..
T Consensus        87 -~~~~~~l~~----~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           87 -SPKLVGLTG----TREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             -CSSCEEEEC----CHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             -CCCeEEEeC----CHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence             468877754    345666788899999999               89999999999864

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.83  E-value=1.5e-08  Score=92.08  Aligned_cols=105  Identities=12%  Similarity=0.092  Sum_probs=80.3

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .+|+.+.+++++||.|+|+|.+.||++|..  +.|.++|++++      +.+++||.|++ |     +.++-..|-.- .
T Consensus        12 ~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~------~~~v~vv~v~~-d-----~~~~~~~~~~~-~   78 (151)
T 3raz_A           12 KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK------KGSVDMVGIAL-D-----TSDNIGNFLKQ-T   78 (151)
T ss_dssp             TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSC------TTTEEEEEEES-S-----CHHHHHHHHHH-S
T ss_pred             cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc------cCCeEEEEEEC-C-----ChHHHHHHHHH-c
Confidence            578899999999999999999999988765  67999998884      35699999987 3     24455555433 3


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhC--CCCCcEEEEECCCCceec
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWD--FRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~--~~~iP~LVvL~pqGkv~~  455 (706)
                      .++|..+....    ...+.+.+.|+  +.++|+.+++|++|+++.
T Consensus        79 ~~~~~~~~~~~----~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~  120 (151)
T 3raz_A           79 PVSYPIWRYTG----ANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQ  120 (151)
T ss_dssp             CCSSCEEEECC----SCHHHHHHTTTCCSCCSSEEEEEETTTTEEE
T ss_pred             CCCCceEecCc----cchHHHHHHhCCccCCCCEEEEECCCCcEEE
Confidence            45555554432    23456677889  999999999999999865

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.82  E-value=1.5e-08  Score=90.23  Aligned_cols=110  Identities=13%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             CCCCceeecc--eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSID--VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is--~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.+.++  .++||.|+|+|.+.||++|..  +.|.+++++.+     .+.+++||.|++ |.    +.++-++|-.
T Consensus        18 ~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~~v~v~~-d~----~~~~~~~~~~   87 (148)
T 3fkf_A           18 NEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-----KNKNFAMLGISL-DI----DREAWETAIK   87 (148)
T ss_dssp             BTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTT-----TCTTEEEEEEEC-CS----CHHHHHHHHH
T ss_pred             CCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhc-----CCCCeEEEEEEC-CC----CHHHHHHHHH
Confidence            4578899999  999999999999999888765  67999998873     234699999986 21    1223333332


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                       ...++|..+..+.    .....+.+.|++.+.|+++++|++|+++...
T Consensus        88 -~~~~~~~~~~d~~----~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           88 -KDTLSWDQVCDFT----GLSSETAKQYAILTLPTNILLSPTGKILARD  131 (148)
T ss_dssp             -HTTCCSEEECCSC----GGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             -HcCCCceEEEccC----CcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence             2456777665432    1134667788999999999999999998664

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.79  E-value=1.3e-08  Score=91.66  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=75.8

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      +|..+.++.++||.|+|+|.+.||++|..  +.|.+++++++.      .+++||.|++ |.    +.++-..|-.- ..
T Consensus        17 ~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~v~v~~-d~----~~~~~~~~~~~-~~   84 (152)
T 3gl3_A           17 KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA------KGFQVVAVNL-DA----KTGDAMKFLAQ-VP   84 (152)
T ss_dssp             SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG------GTEEEEEEEC-CS----SHHHHHHHHHH-SC
T ss_pred             CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEC-CC----CHHHHHHHHHH-cC
Confidence            77799999999999999999999999876  579999999863      2499999986 21    12333333322 22


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+|..+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        85 ~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  121 (152)
T 3gl3_A           85 AEFTVAFDPK-------GQTPRLYGVKGMPTSFLIDRNGKVLLQ  121 (152)
T ss_dssp             CCSEEEECTT-------CHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             CCCceeECCc-------chhHHHcCCCCCCeEEEECCCCCEEEE
Confidence            3444333322       246778899999999999999999864

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.76  E-value=2.5e-09  Score=95.27  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=77.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|..+.++.++||.|+|+|.+.||++|..  +.|.++|++.+.      .+++||.|++-+     +.++-++|-.-+
T Consensus        18 ~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~~v~v~~d~-----~~~~~~~~~~~~   86 (148)
T 3hcz_A           18 DTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA------KGIQVYAANIER-----KDEEWLKFIRSK   86 (148)
T ss_dssp             CTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGG------GTEEEEEEECCS-----SSHHHHHHHHHH
T ss_pred             cCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc------CCEEEEEEEecC-----CHHHHHHHHHHc
Confidence            3568899999999999999999999888654  689999999973      259999998721     122334443322


Q ss_pred             cCCC-ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMP-WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MP-WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       .++ |..+.-+     .....+.+.|++.+.|+++++|++|+++..
T Consensus        87 -~~~~~~~~~d~-----~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  127 (148)
T 3hcz_A           87 -KIGGWLNVRDS-----KNHTDFKITYDIYATPVLYVLDKNKVIIAK  127 (148)
T ss_dssp             -TCTTSEEEECT-----TCCCCHHHHHCCCSSCEEEEECTTCBEEEE
T ss_pred             -CCCCceEEecc-----ccchhHHHhcCcCCCCEEEEECCCCcEEEe
Confidence             344 4444332     222336677899999999999999999865

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.75  E-value=1.3e-07  Score=86.94  Aligned_cols=114  Identities=11%  Similarity=0.073  Sum_probs=84.4

Q ss_pred             CCCceeecceecCcEEEEEEecCCCCh-hHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSN-EEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.+.++.++||.|+|+|.+.||++ |..  +.|.++|+++++.+  ...+++||+|++ |... =+.+.-+.|-+-+
T Consensus        14 ~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~--~~~~v~vv~is~-d~~~-d~~~~~~~~~~~~   89 (171)
T 2rli_A           14 HRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEP--GLPPVQPVFITV-DPER-DDVEAMARYVQDF   89 (171)
T ss_dssp             TTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHST--TSCCEEEEEEES-CSTT-CCHHHHHHHHHTT
T ss_pred             CCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhcc--CCCceEEEEEEE-CCCC-CCHHHHHHHHHHc
Confidence            568899999999999999999999987 754  78999999997421  235799999986 3210 0123444554433


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCc---------------EEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP---------------~LVvL~pqGkv~~~  456 (706)
                       ..+|..+.-    +....+.+.+.|++...|               +.+++|++|+++..
T Consensus        90 -~~~~~~l~~----~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           90 -HPRLLGLTG----STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             -CTTCCEEEC----CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             -CCCeEEEeC----CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence             467766654    235566778889999888               99999999999864

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.75  E-value=1.3e-08  Score=91.72  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=79.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|..  +.|.++|++.+      +.++.+|.|++ |.    +++.-++|-.- 
T Consensus        17 ~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~------~~~~~~v~v~~-d~----~~~~~~~~~~~-   84 (152)
T 2lja_A           17 DINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA------GKDIHFVSLSC-DK----NKKAWENMVTK-   84 (152)
T ss_dssp             ETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHST------TSSEEEEEEEC-CS----CHHHHHHHHHH-
T ss_pred             cCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhc------cCCeEEEEEEc-cC----cHHHHHHHHHh-
Confidence            4678899999999999999999999998864  67888888874      34699999986 21    12233344322 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..++|+.+....      ...+.+.|++.+.|+++++|++|+++..
T Consensus        85 ~~~~~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  124 (152)
T 2lja_A           85 DQLKGIQLHMGT------DRTFMDAYLINGIPRFILLDRDGKIISA  124 (152)
T ss_dssp             HTCCSEEEECSS------CTHHHHHTTCCSSCCEEEECTTSCEEES
T ss_pred             cCCCCceeecCc------chhHHHHcCcCCCCEEEEECCCCeEEEc
Confidence            367787666532      2345567899999999999999999874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.71  E-value=2.2e-08  Score=90.60  Aligned_cols=105  Identities=16%  Similarity=0.246  Sum_probs=76.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.+++++++.      .+++||.|++-+     +.+.-+.|-.-+
T Consensus        13 ~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~v~~d~-----~~~~~~~~~~~~   81 (151)
T 2f9s_A           13 DTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS------QGVEIVAVNVGE-----SKIAVHNFMKSY   81 (151)
T ss_dssp             CTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             cCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc------CCeEEEEEECCC-----CHHHHHHHHHHc
Confidence            3467899999999999999999999988765  679999998862      369999998722     233344443322


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       .++|..+.-++       ..+.+.|++.+.|+++++|++|+++..
T Consensus        82 -~~~~~~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~~~  119 (151)
T 2f9s_A           82 -GVNFPVVLDTD-------RQVLDAYDVSPLPTTFLINPEGKVVKV  119 (151)
T ss_dssp             -TCCSCEEEETT-------SHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             -CCCceEEECCc-------hHHHHhcCCCCCCeEEEECCCCcEEEE
Confidence             34544332221       235667899999999999999999864

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.69  E-value=5.7e-08  Score=88.27  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhH---HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCC-CcChhhHHHHHHhh
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEE---LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRST-PWTEAKEHKFEALQ  410 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e---~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~-~w~D~de~~Fe~~~  410 (706)
                      +|+.+.++.++||.|+|+|.+.||++|.   ++.|.++|++++      +.+++||.|++-.... .=+.+.-++|-.- 
T Consensus        17 ~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~------~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~-   89 (158)
T 3eyt_A           17 SATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP------EDKVAVLGLHTVFEHHEAMTPISLKAFLHE-   89 (158)
T ss_dssp             CSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSC------TTTEEEEEEECCCSCGGGSCHHHHHHHHHH-
T ss_pred             CCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhC------cCCEEEEEEEecccccccCCHHHHHHHHHH-
Confidence            5789999999999999999999998874   578999999985      2469999998621000 0013333344321 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..++|..+--++  .......+.+.|++.+.|+++++|++|+++..
T Consensus        90 ~~~~~~~~~d~~--~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           90 YRIKFPVGVDQP--GDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             TTCCSCEEEECC--CSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             cCCCceEEEcCc--cchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            233443322222  11111246677899999999999999999864

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.68  E-value=3.8e-08  Score=85.38  Aligned_cols=110  Identities=16%  Similarity=0.155  Sum_probs=76.7

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.+++++.       +.++.+|.|...+.+   .+.+.+....+.
T Consensus         9 ~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~-------~~~~~~v~i~~~~~~---~~~~~~~~~~~~   78 (138)
T 4evm_A            9 GVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEA-------GDDYVVLTVVSPGHK---GEQSEADFKNWY   78 (138)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTC-------TTTEEEEEEECTTST---TCCCHHHHHHHH
T ss_pred             CCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHh-------CCCcEEEEEEcCCCC---chhhHHHHHHHH
Confidence            3467899999999999999999999988765  4577776663       346888887432211   244556666666


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ...++...|.-  .|.  ...+.+.|++.+.|+++++|++|+++..
T Consensus        79 ~~~~~~~~~~~--~d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           79 KGLDYKNLPVL--VDP--SGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             TTCCCTTCCEE--ECT--TCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             hhcCCCCeeEE--ECc--chHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            66554222221  121  1246678899999999999999999753

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.67  E-value=1.2e-07  Score=89.29  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=81.9

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ...+|+.|++++++||.|+|+|-+.||++ |  +++.|.++|+++++    .+.+++||+|++ |+  .=+.+.-++|-+
T Consensus        14 ~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~----~~~~~~vv~is~-d~--~d~~~~~~~~~~   86 (170)
T 3me7_A           14 VDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT----PGKDFWVITFTF-DP--KDTLEDIKRFQK   86 (170)
T ss_dssp             EETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCC----BTTTBEEEEEEC-CT--TCCHHHHHHHHH
T ss_pred             EcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhh----cCCceEEEEEEC-CC--CCCHHHHHHHHH
Confidence            34678899999999999999999999963 4  56789999999962    356899999997 42  112344556654


Q ss_pred             hhc-CC-CceeeccCCCCCHHHHHHHHHhhCC---------CCCcEEEEECCCCceecc
Q 005245          409 LQY-MM-PWFSVHHPSAIDPAVIRYAKEKWDF---------RKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~-~M-PWyAVpf~~~id~~~~r~ike~~~~---------~~iP~LVvL~pqGkv~~~  456 (706)
                      -+. .. .|.-+--.   +....+.+.+.|++         ...|.++++||+|+++..
T Consensus        87 ~~~~~~~~w~~l~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~  142 (170)
T 3me7_A           87 EYGIDGKGWKVVKAK---TSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY  142 (170)
T ss_dssp             HTTCCSSSEEEEEES---SHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred             HcCCCCCCeEEEeCC---CHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE
Confidence            433 33 37433222   34556667777664         466899999999999853

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.66  E-value=2.6e-07  Score=84.61  Aligned_cols=118  Identities=18%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHH--
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKF--  406 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~F--  406 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|.  ++.|.++|+++++      .+++||.|++-+  ...+++.++-++|  
T Consensus        18 ~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~d~~~~~~~~~~~~~~~~~~   91 (169)
T 2v1m_A           18 DINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG------KGLRILAFPCNQFGGQEPWAEAEIKKFVT   91 (169)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             cCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc------CCeEEEEEECCccCCCCCCCHHHHHHHHH
Confidence            457889999999999999999999999885  4789999999973      359999998621  0012344556667  


Q ss_pred             HHhhcCCCcee-eccCCCCCHHHHHHHHHh-hC-----CCCCcEEEEECCCCceecc
Q 005245          407 EALQYMMPWFS-VHHPSAIDPAVIRYAKEK-WD-----FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       407 e~~~~~MPWyA-Vpf~~~id~~~~r~ike~-~~-----~~~iP~LVvL~pqGkv~~~  456 (706)
                      +.+.-..|.++ +........+..+++++. ++     ++.+|..+++|++|+++..
T Consensus        92 ~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           92 EKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             HHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             HhcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            44444444332 111111111244555543 24     5567999999999999864

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.66  E-value=1.2e-07  Score=90.32  Aligned_cols=118  Identities=13%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHH-
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFE-  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe-  407 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|.  ++.|.++|+++++      .+++||.|++-+  .-...+.++-++|- 
T Consensus        35 ~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~~~~~~~~~~~~~~  108 (190)
T 2vup_A           35 DADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS------QGFTVLAFPCNQFGGQEPGNEEEIKEFVC  108 (190)
T ss_dssp             BTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTCEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             cCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc------CCeEEEEEEcCccCCCCCCCHHHHHHHHH
Confidence            356789999999999999999999998874  4789999999973      259999998721  00112344555564 


Q ss_pred             -HhhcCCCceee-ccCCCCCHHHHHHHH-HhhCCCCCc------EEEEECCCCceecc
Q 005245          408 -ALQYMMPWFSV-HHPSAIDPAVIRYAK-EKWDFRKKP------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 -~~~~~MPWyAV-pf~~~id~~~~r~ik-e~~~~~~iP------~LVvL~pqGkv~~~  456 (706)
                       .+.-..|+++- ........+..+++. +.+++.++|      +.+++|++|+++..
T Consensus       109 ~~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          109 TKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             HHHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             HhcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence             44445555541 111111122445444 457888898      99999999999864

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.64  E-value=6.8e-08  Score=87.69  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=76.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhH---HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCC-cChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE---LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP-WTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e---~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~-w~D~de~~Fe~~  409 (706)
                      .+|+.+.++.++||.|+|+|.+.||++|.   .+.|.++|++.+      +.+++||.|++-....+ -+.+.-++|-.-
T Consensus        18 ~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~------~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~   91 (160)
T 3lor_A           18 VNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMID------ESQVQVIGLHSVFEHHDVMTPEALKVFIDE   91 (160)
T ss_dssp             SSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSC------TTTEEEEEEECCCSCGGGSCHHHHHHHHHH
T ss_pred             cCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhC------cCCcEEEEEeccccccccCCHHHHHHHHHH
Confidence            35689999999999999999999999875   468999999985      23599999986210000 023333444322


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       ..++|-.+--+.. .....+.+.+.|++.++|+.+++|++|+++..
T Consensus        92 -~~~~~~~~~d~~~-~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           92 -FGIKFPVAVDMPR-EGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             -TTCCSCEEEECCC-TTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             -cCCCCcEEECCcc-ccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence             2334333322221 11112336677899999999999999999864

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.64  E-value=8.2e-08  Score=87.37  Aligned_cols=108  Identities=12%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++.+      +.++++|.|++-+     +.+.-++|-.- 
T Consensus        21 ~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~------~~~v~~v~v~~d~-----~~~~~~~~~~~-   88 (165)
T 3or5_A           21 TVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWA------SRGFTFVGIAVNE-----QLPNVKNYMKT-   88 (165)
T ss_dssp             CTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHT------TTTEEEEEEECSC-----CHHHHHHHHHH-
T ss_pred             CCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc------cCCeEEEEEECCC-----CHHHHHHHHHH-
Confidence            3678899999999999999999999998776  57999999986      2358999998621     23333444332 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhh--CCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKW--DFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~--~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..++|..+.-    +.+..+.+...+  ++.+.|+++++|++|+++..
T Consensus        89 ~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  132 (165)
T 3or5_A           89 QGIIYPVMMA----TPELIRAFNGYIDGGITGIPTSFVIDASGNVSGV  132 (165)
T ss_dssp             HTCCSCEEEC----CHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred             cCCCCceEec----CHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEE
Confidence            3456554443    123333322111  79999999999999999754

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.62  E-value=1.3e-07  Score=86.73  Aligned_cols=120  Identities=10%  Similarity=0.043  Sum_probs=84.2

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ...+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++++      +.++.+|.|+.        |.+.++|-. 
T Consensus        27 ~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~--------d~~~~~~~~-   91 (158)
T 3hdc_A           27 PTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP------KGDLVVLAVNV--------EKRFPEKYR-   91 (158)
T ss_dssp             ECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSS------TTSEEEEEEEC--------SSSCCGGGG-
T ss_pred             EcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcc------cCCeEEEEEeC--------CHHHHHHHH-
Confidence            34678899999999999999999999988765  67999999885      24688888875        222222322 


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec-------ccHHHHHHHhCcccccCC
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN-------QNALHMMWIWGSVAFPFS  473 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~-------~nA~~mI~~wG~~AFPFT  473 (706)
                      ...++|..+.-+       ...+.+.|++.+.|+++++|++|+++.       .+.-+++..+...-|||.
T Consensus        92 ~~~~~~~~~~d~-------~~~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~~~  155 (158)
T 3hdc_A           92 RAPVSFNFLSDA-------TGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHHH  155 (158)
T ss_dssp             GCCCSCEEEECT-------TSHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC----
T ss_pred             HcCCCceEEECc-------hHHHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccccc
Confidence            234555443322       124667889999999999999999874       455666676666666663

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.62  E-value=8.6e-08  Score=84.77  Aligned_cols=104  Identities=12%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|..+.++. +||.|+|+|.+.||++|..  +.|.++|++.+      ..++++|.|++-+.     +.+.+....+.
T Consensus        22 ~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~d~~-----~~~~~~~~~~~   89 (145)
T 3erw_A           22 TIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHP------SDSVKLVTVNLVNS-----EQNQQVVEDFI   89 (145)
T ss_dssp             CTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCC------CSSEEEEEEECGGG-----SSCHHHHHHHH
T ss_pred             cCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcC------CCCEEEEEEEccCC-----cCCHHHHHHHH
Confidence            45678999999 9999999999999988776  57888888874      34699999987221     11333333332


Q ss_pred             c--CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          411 Y--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       411 ~--~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      .  ..+|..+.-+       ...+.+.|++.+.|+++++|++|+++.
T Consensus        90 ~~~~~~~~~~~d~-------~~~~~~~~~v~~~P~~~lid~~G~i~~  129 (145)
T 3erw_A           90 KANKLTFPIVLDS-------KGELMKEYHIITIPTSFLLNEKGEIEK  129 (145)
T ss_dssp             HHTTCCSCEEECS-------SSHHHHHTTCCEESEEEEECTTCCEEE
T ss_pred             HHcCCceeEEEcC-------chhHHHhcCcCccCeEEEEcCCCcEEE
Confidence            2  3343332221       124567789999999999999999875

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.60  E-value=2.7e-08  Score=90.69  Aligned_cols=111  Identities=12%  Similarity=0.068  Sum_probs=80.5

Q ss_pred             ccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +...+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++++.      .+++||.|++-+..   .+...+.+..
T Consensus        23 l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~~~~~---~~~~~~~~~~   93 (164)
T 2h30_A           23 MKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF------SSANLITVASPGFL---HEKKDGEFQK   93 (164)
T ss_dssp             CEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG------TTSEEEEEECTTST---TCCCTTHHHH
T ss_pred             cCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCcEEEEEEcCCCc---cccCHHHHHH
Confidence            334567789999999999999999999998865  679999888762      35999999862110   1223456666


Q ss_pred             hhcCCCc--eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPW--FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPW--yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      +...+.|  +.+-...      ...+.+.|++.+.|+++++|++|+++..
T Consensus        94 ~~~~~~~~~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  137 (164)
T 2h30_A           94 WYAGLNYPKLPVVTDN------GGTIAQNLNISVYPSWALIGKDGDVQRI  137 (164)
T ss_dssp             HHTTSCCTTSCEEECT------TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             HHHhCCCCcceEEEcC------chHHHHHcCCCccceEEEECCCCcEEEE
Confidence            6665444  4444322      2346677899999999999999998853

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.59  E-value=2.4e-07  Score=85.72  Aligned_cols=104  Identities=15%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCCceeecceecCcE-EEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKS-VLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~-VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.+.+++++||. |+|+|- +.||++|..  +.|.++|++++.      .+++||.|+. |     +.+.-++|-+
T Consensus        15 ~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~vs~-d-----~~~~~~~~~~   82 (161)
T 3drn_A           15 ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD------YDVVVIGVSS-D-----DINSHKRFKE   82 (161)
T ss_dssp             ETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT------TCEEEEEEES-C-----CHHHHHHHHH
T ss_pred             cCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEeC-C-----CHHHHHHHHH
Confidence            4578899999999998 999998 999988755  789999999973      3599999986 3     2445555544


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCC----CcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK----KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~----iP~LVvL~pqGkv~~~  456 (706)
                      -+ .+||..+.-++       ..+.+.|++.+    +|..+++|++|+++..
T Consensus        83 ~~-~~~~~~~~d~~-------~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           83 KY-KLPFILVSDPD-------KKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             HT-TCCSEEEECTT-------SHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             Hh-CCCceEEECCc-------HHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            32 45655443322       34567789999    9999999999999754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.59  E-value=6.3e-08  Score=84.94  Aligned_cols=101  Identities=11%  Similarity=0.068  Sum_probs=74.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|..+.++.++||.|+|+|.+.||++|..  +.|.+++++.+        +++++.|++-+     +.++-++|-.- 
T Consensus        11 ~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~~~-----~~~~~~~~~~~-   76 (136)
T 1lu4_A           11 TLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--------AVTFVGIATRA-----DVGAMQSFVSK-   76 (136)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHHHHH-
T ss_pred             cCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--------CcEEEEEEcCC-----CHHHHHHHHHH-
Confidence            3567899999999999999999999998876  56888777652        68999998621     24444455432 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                      ..++|..+.-++       ..+.+.|++.+.|+++++|++|+++
T Consensus        77 ~~~~~~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~  113 (136)
T 1lu4_A           77 YNLNFTNLNDAD-------GVIWARYNVPWQPAFVFYRADGTST  113 (136)
T ss_dssp             HTCCSEEEECTT-------SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             cCCCceEEECCc-------hhHHHhcCCCCCCEEEEECCCCcEE
Confidence            244555443221       2355678999999999999999997

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.59  E-value=7.4e-08  Score=88.54  Aligned_cols=105  Identities=20%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccC-------------CCCc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDR-------------STPW  398 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~-------------s~~w  398 (706)
                      .+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++.+        +++||.|++-..             ...=
T Consensus        25 ~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--------~v~vv~i~~d~~~~~~~~~~~~~~~~~~~   96 (165)
T 3ha9_A           25 IDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--------EISVIAIDFWTAEALKALGLNKPGYPPPD   96 (165)
T ss_dssp             TTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--------TEEEEEEECCSHHHHHHHTCCSTTSCCCC
T ss_pred             CCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--------CcEEEEEEecccccccccccccccCCCCC
Confidence            467899999999999999999999999876  56888887762        699999986200             0000


Q ss_pred             ChhhHHHHHHhhcCC-CceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          399 TEAKEHKFEALQYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       399 ~D~de~~Fe~~~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      +.++-++|-.-+ .+ +|..+-     |   ...+.+.|++.+.|+++++|++|+++.
T Consensus        97 ~~~~~~~~~~~~-~~~~~~~~~-----d---~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           97 TPEMFRKFIANY-GDPSWIMVM-----D---DGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             CHHHHHHHHHHH-SCTTSEEEE-----C---CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             CHHHHHHHHHHc-CCCCeeEEe-----C---hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence            223333343322 22 333222     2   234566789999999999999999988

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.58  E-value=4.4e-07  Score=83.16  Aligned_cols=117  Identities=16%  Similarity=0.355  Sum_probs=78.5

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccC---CCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDR---STPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~---s~~w~D~de~~Fe  407 (706)
                      ..+|+.|.+++++||.|+|+|.+.||++|..  +.|.++|++++.      .+++||.|++ |.   ...-+.+.-++|-
T Consensus        19 ~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~vs~-d~~~~~~~~~~~~~~~~~   91 (170)
T 2p5q_A           19 DAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD------QGLEILAFPC-NQFGEEEPGTNDQITDFV   91 (170)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEEC-CTTTTCCCSCHHHHHHHH
T ss_pred             cCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhcc------CCEEEEEEEC-CCCCCCCCCCHHHHHHHH
Confidence            3578899999999999999999999999854  789999999973      2599999986 21   0001233445554


Q ss_pred             H--hhcCCCcee-eccCCCCCHHHHHHHH-HhhCC--CCCc---EEEEECCCCceecc
Q 005245          408 A--LQYMMPWFS-VHHPSAIDPAVIRYAK-EKWDF--RKKP---ILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 ~--~~~~MPWyA-Vpf~~~id~~~~r~ik-e~~~~--~~iP---~LVvL~pqGkv~~~  456 (706)
                      .  +.-..|++. +.-......+..++++ +.+++  .++|   +.+++|++|+++..
T Consensus        92 ~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           92 CTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             HHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             HHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence            3  333445543 1111111113445554 34566  7889   99999999999875

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.58  E-value=3.1e-07  Score=88.67  Aligned_cols=114  Identities=11%  Similarity=0.099  Sum_probs=79.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCCh-hH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSN-EE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|.+++++||.|+|+|.+.||++ |.  ++.|.++|+++++.   .+.+++||+|++ |...+ +.+..+.|-+-
T Consensus        28 d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~---~~~~v~vv~Is~-D~~~d-~~~~~~~~~~~  102 (200)
T 2b7k_A           28 DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSK---YGITLQPLFITC-DPARD-SPAVLKEYLSD  102 (200)
T ss_dssp             ETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEES-CTTTC-CHHHHHHHHTT
T ss_pred             cCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHh---hCCceEEEEEEC-CCCCC-CHHHHHHHHHH
Confidence            3578899999999999999999999997 75  47899999999742   145799999986 31000 12233344332


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC-CCc---------------EEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-KKP---------------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~-~iP---------------~LVvL~pqGkv~~~  456 (706)
                      + ..+|..++-    +......+.+.|++. ++|               ..+++|++|+++..
T Consensus       103 ~-~~~~~~l~~----~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A          103 F-HPSILGLTG----TFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             S-CTTCEEEEC----CHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             c-CCCceEEeC----CHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence            2 356776664    234556666778886 454               78999999999854

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.57  E-value=1.2e-07  Score=90.37  Aligned_cols=115  Identities=10%  Similarity=0.139  Sum_probs=76.7

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.|.+++++||.|+|+|-+.||++|.  ++.|.++|+++++      .+++||.|++-+  .....   +.+...+
T Consensus        33 d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~~~vi~is~d~~~~~e~~---~~~~~~~  103 (187)
T 3dwv_A           33 DADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS------QGFTVLAFPSNQFGGQEPG---NEEEIKE  103 (187)
T ss_dssp             BTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGG------GTCEEEEEEBCCCSSCSSS---BTTHHHH
T ss_pred             cCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhh------CCeEEEEEECcccCCCCCC---CHHHHHH
Confidence            357789999999999999999999987764  5789999999973      259999998721  00011   2233443


Q ss_pred             hhc---CCCceeec--c-CCCCCHHHHHHHHH----hhCCCCCc---EEEEECCCCceecc
Q 005245          409 LQY---MMPWFSVH--H-PSAIDPAVIRYAKE----KWDFRKKP---ILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~---~MPWyAVp--f-~~~id~~~~r~ike----~~~~~~iP---~LVvL~pqGkv~~~  456 (706)
                      +..   .++|..+.  . ......+..+++++    .+++..+|   +.+++|++|+++..
T Consensus       104 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          104 FVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             SCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            332   44544432  1 11111234556654    34667788   99999999999865

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.57  E-value=1.4e-07  Score=85.11  Aligned_cols=106  Identities=9%  Similarity=0.059  Sum_probs=76.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.+++++.+      +.+++||.|++ |.   -+.+.-++|-...
T Consensus        15 ~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~v~v~~-d~---~~~~~~~~~~~~~   84 (154)
T 3kcm_A           15 TLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA------GKPFRMLCVSI-DE---GGKVAVEEFFRKT   84 (154)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT------TSSEEEEEEEC-CT---THHHHHHHHHHHH
T ss_pred             cCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEEc-CC---cchHHHHHHHHHc
Confidence            4578899999999999999999999988766  57999998885      34699999986 21   1133334443332


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       ..+|..+.-+       ...+.+.|++.+.|..+++|++|+++..
T Consensus        85 -~~~~~~~~d~-------~~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           85 -GFTLPVLLDA-------DKRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             -CCCCCEEECT-------TCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             -CCCeeEEecC-------chHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence             3455443322       1235677899999999999999999754

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.56  E-value=2e-07  Score=91.89  Aligned_cols=113  Identities=12%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             CCCCccccCC-----CCceeecceecCcEEEEEEec-CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCC
Q 005245          325 DDQLPLVECP-----TKRKVSIDVLRRKSVLLLVSD-LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRST  396 (706)
Q Consensus       325 ~~~~pl~dg~-----~~~kV~Is~L~gK~VlL~fSa-l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~  396 (706)
                      ++..|-|...     +|+.|.+++++||.|+|+|-+ .||++|..  +.|.++|+++++      .+++||.|++ |   
T Consensus        43 G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~------~~v~vv~Is~-D---  112 (222)
T 3ztl_A           43 NRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS------RNCQVIACST-D---  112 (222)
T ss_dssp             SEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S---
T ss_pred             CCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEEC-C---
Confidence            3334555443     448999999999999999996 99987655  689999999973      3599999986 4   


Q ss_pred             CcChhhHHHHHHhh------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          397 PWTEAKEHKFEALQ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       397 ~w~D~de~~Fe~~~------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                        +.++.+.|.+..      ..++|..+.-++       ..+.+.|++.      ..|..+++|++|+++..
T Consensus       113 --~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-------~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~  175 (222)
T 3ztl_A          113 --SQYSHLAWDNLDRKSGGLGHMKIPLLADRK-------QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQI  175 (222)
T ss_dssp             --CHHHHHHHHHSCGGGTSCCSCSSCEEECSS-------SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEE
T ss_pred             --CHHHHHHHHHHhhhhccccccceeEEeCCc-------hHHHHHcCCeecCCCCccceEEEECCCCeEEEE
Confidence              244566676543      156666554332       3455667887      88999999999999865

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.56  E-value=3.1e-07  Score=85.63  Aligned_cols=117  Identities=15%  Similarity=0.216  Sum_probs=72.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhH-HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCc--ChhhHHHHH--H
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE-LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW--TEAKEHKFE--A  408 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e-~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w--~D~de~~Fe--~  408 (706)
                      .+|+.|++++++||.|+|+|.+.||++|. ++.|.++|+++++      .+++||.|++-+...+.  +.+..++|-  .
T Consensus        20 ~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~   93 (171)
T 3cmi_A           20 KKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKD------EGFTIIGFPCNQFGHQEPGSDEEIAQFCQLN   93 (171)
T ss_dssp             TTSCBCCGGGGTTCEEEEEEEESSSCCHHHHHHHHHHHHHHGG------GTEEEEEEEECSCC-----------------
T ss_pred             CCCCEecHHHcCCCEEEEEEEecCCCcchhHHHHHHHHHHhcc------CCeEEEEEECcccCCCCCCCHHHHHHHHHhc
Confidence            46789999999999999999999988875 4679999999973      35999999862100001  112223443  2


Q ss_pred             hhcCCCceeeccCC-CCCHHHHHHHH-HhhCCCCCc------EEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPS-AIDPAVIRYAK-EKWDFRKKP------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~-~id~~~~r~ik-e~~~~~~iP------~LVvL~pqGkv~~~  456 (706)
                      +.-..|+++-+-+. ..-.+..+++. +.+++.+.|      +.+++|++|+++..
T Consensus        94 ~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           94 YGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             -CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             cCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            22233433311111 00112344443 468999999      99999999999865

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.55  E-value=2e-07  Score=87.38  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=77.0

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      +|+.+.++.++||.|+|+|-+.||++|..  +.|.++|++++...-+...+++||.|++ |.   -+.+.-++|-.- ..
T Consensus        48 ~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~-d~---~~~~~~~~~~~~-~~  122 (183)
T 3lwa_A           48 EGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINV-RD---YSRDIAQDFVTD-NG  122 (183)
T ss_dssp             TTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEEC-SC---CCHHHHHHHHHH-TT
T ss_pred             CCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEEC-CC---CCHHHHHHHHHH-cC
Confidence            78899999999999999999999998865  6799999999753111234559999976 21   022333444332 24


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      +||..+.-++   ....+.+. .|++.++|..+++|++|+++..
T Consensus       123 ~~~~~~~d~~---~~~~~~~~-~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          123 LDYPSIYDPP---FMTAASLG-GVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             CCSCEEECTT---CGGGGGTT-TCCTTCCSEEEEECTTSCEEEE
T ss_pred             CCccEEECCc---chHHHHhc-cCCCCCCCeEEEECCCCcEEEE
Confidence            6666654432   22222222 2578999999999999999753

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.55  E-value=1e-07  Score=91.20  Aligned_cols=101  Identities=11%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             ceeecceecCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc--
Q 005245          337 RKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY--  411 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~--  411 (706)
                      +.|++++++||.|+|+|- +.||++|.  ++.|.++|++++.      .+++||.|++ |     +.+..+.|-.-+.  
T Consensus        36 ~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Vs~-d-----~~~~~~~~~~~~~~~  103 (195)
T 2bmx_A           36 TTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED------RDAQILGVSI-D-----SEFAHFQWRAQHNDL  103 (195)
T ss_dssp             EEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHHCTTG
T ss_pred             cEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHHhccc
Confidence            799999999999999999 99988875  4789999999973      3699999986 3     1344555654331  


Q ss_pred             -CCCceeeccCCCCCHHHHHHHHHhhCCC-----CCcEEEEECCCCceecc
Q 005245          412 -MMPWFSVHHPSAIDPAVIRYAKEKWDFR-----KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 -~MPWyAVpf~~~id~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~~  456 (706)
                       .++|..+.-+       ...+.+.|++.     ..|+++++|++|+++..
T Consensus       104 ~~~~~~~~~d~-------~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~  147 (195)
T 2bmx_A          104 KTLPFPMLSDI-------KRELSQAAGVLNADGVADRVTFIVDPNNEIQFV  147 (195)
T ss_dssp             GGCCSCEEECT-------TSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEE
T ss_pred             cCCceeEEeCC-------chHHHHHhCCcccCCCccceEEEEcCCCeEEEE
Confidence             3454433322       13455678998     99999999999999875

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.54  E-value=6.5e-07  Score=82.53  Aligned_cols=114  Identities=11%  Similarity=0.129  Sum_probs=76.9

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCC-hh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVS-NE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~-~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.+.+++++||.|+|+|-+.||+ +|  +++.|.++|+++++    .+.+++||.|++ |... =+.+..+.|-+-
T Consensus        20 ~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~----~~~~~~vv~is~-d~~~-d~~~~~~~~~~~   93 (174)
T 1xzo_A           20 NQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA----ENIDVRIISFSV-DPEN-DKPKQLKKFAAN   93 (174)
T ss_dssp             CTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH----TTCCCEEEEEES-CTTT-CCHHHHHHHHTT
T ss_pred             cCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhh----cCCcEEEEEEEe-CCCC-CCHHHHHHHHHH
Confidence            457889999999999999999999987 44  66889999999974    234799999986 3100 012233444332


Q ss_pred             hcCCCc---eeeccCCCCCHHHHHHHH-Hh-----------hCCCCCcEEEEECCCCceecc
Q 005245          410 QYMMPW---FSVHHPSAIDPAVIRYAK-EK-----------WDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPW---yAVpf~~~id~~~~r~ik-e~-----------~~~~~iP~LVvL~pqGkv~~~  456 (706)
                       ..++|   ..+.-+   +.+..+.+. ..           +++...|+.+++|++|+++..
T Consensus        94 -~~~~~~~~~~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           94 -YPLSFDNWDFLTGY---SQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             -SCCCGGGEEEEBCS---CHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             -cCCCCcceEEEeCC---CHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence             23444   333222   244444332 23           356789999999999999864

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=1e-08  Score=93.78  Aligned_cols=105  Identities=16%  Similarity=0.204  Sum_probs=73.1

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHH-HHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQ-MYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~-iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.+.+++++||.|+|+|.+.||++|..  +.|.+ +|++.+     .+.+++||.|++        |.+.+..+.+.
T Consensus        21 ~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~-----~~~~~~vv~v~~--------d~~~~~~~~~~   87 (159)
T 2ls5_A           21 TDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHK-----DNADFALIGIDR--------DEPLEKVLAFA   87 (159)
Confidence            467889999999999999999999988765  56887 887774     245799999975        22223333333


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhC--CCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWD--FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~--~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..+.+   +||-..|.  ...+.+.|+  +.+.|+++++|++|+++..
T Consensus        88 ~~~~~---~~~~~~d~--~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  130 (159)
T 2ls5_A           88 KSTGV---TYPLGLDP--GADIFAKYALRDAGITRNVLIDREGKIVKL  130 (159)
Confidence            33322   33322232  234566778  5679999999999998853

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.53  E-value=5.8e-07  Score=84.32  Aligned_cols=109  Identities=18%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++||.|+|+|-+.||++|..  +.|.++|++++      +.+++||.|++ |.   -+.+..+.|-+-+
T Consensus        47 ~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~------~~~~~vv~v~~-d~---~~~~~~~~~~~~~  116 (186)
T 1jfu_A           47 DADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS------GPNFEVVAINI-DT---RDPEKPKTFLKEA  116 (186)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC------BTTEEEEEEEC-CC---SCTTHHHHHHHHT
T ss_pred             cCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhc------cCCcEEEEEEC-CC---CCHHHHHHHHHHc
Confidence            4678899999999999999999999988765  67999999985      35699999986 31   1123345554433


Q ss_pred             c--CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 Y--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~--~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .  ..|++.-+     +....+.+.-..+..+.|+.+++|++|+++..
T Consensus       117 ~~~~~~~~~d~-----~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          117 NLTRLGYFNDQ-----KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             TCCTTCCEECT-----TCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             CCCCCceEECC-----cchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            2  35665422     22444444333333589999999999999864

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.53  E-value=5.4e-07  Score=79.85  Aligned_cols=117  Identities=9%  Similarity=0.053  Sum_probs=78.8

Q ss_pred             CCCCccccC----CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCc
Q 005245          325 DDQLPLVEC----PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW  398 (706)
Q Consensus       325 ~~~~pl~dg----~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w  398 (706)
                      ++..|-|..    .+|..+.++.++||.|+|+|.+.||++|..  +.|.++|++.+      +. +++|.|++-+....=
T Consensus         4 g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~------~~-~~~~~v~~~~~~~~~   76 (148)
T 2b5x_A            4 RQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ------DQ-LNVVAVHMPRSEDDL   76 (148)
T ss_dssp             TCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT------TT-SEEEEEECCCSTTTS
T ss_pred             CCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhc------CC-cEEEEEEcCCCcccc
Confidence            334455654    468889999999999999999999988866  57889888885      22 999999862111000


Q ss_pred             ChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          399 TEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       399 ~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      +.++-+.|-.- ..++|..+.-+       ...+.+.|++.+.|+++++|++|+++..
T Consensus        77 ~~~~~~~~~~~-~~~~~~~~~d~-------~~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           77 DPGKIKETAAE-HDITQPIFVDS-------DHALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             SHHHHHHHHHH-TTCCSCEEECS-------SCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             CHHHHHHHHHH-cCCCcceEECC-------chhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            22333344322 23444433221       1235567899999999999999998863

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.53  E-value=5.8e-07  Score=84.81  Aligned_cols=117  Identities=13%  Similarity=0.130  Sum_probs=77.1

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.+++++++||.|+|+|.+.||++|..  +.|.++|+++++      .+++||.|++-+  .-...+.++-++|-.
T Consensus        34 ~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~vs~d~~~~~e~~~~~~~~~~~~  107 (183)
T 2obi_A           34 DIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE------CGLRILAFPCNQFGKQEPGSNEEIKEFAA  107 (183)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             cCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc------CCeEEEEEECCCCCCCCCCCHHHHHHHHH
Confidence            3578899999999999999999999998754  789999999973      359999998621  000123444555532


Q ss_pred             hhcCCCceeec---cCCCCCHHHHHHHHHhh---C-----CCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVH---HPSAIDPAVIRYAKEKW---D-----FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVp---f~~~id~~~~r~ike~~---~-----~~~iP~LVvL~pqGkv~~~  456 (706)
                      - ...+|..+-   .......+..+++++..   +     ++.+|+.+++|++|+++..
T Consensus       108 ~-~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A          108 G-YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             T-TTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             H-cCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            2 233443332   11111113455565443   2     4557999999999999864

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.53  E-value=1.1e-07  Score=82.83  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=71.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .+|..+.++.++||.|+|+|.+.||++|..  +.|.+++++.+        +++++.|++-+     +.+.-++|-.-. 
T Consensus        13 ~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~~~-----~~~~~~~~~~~~-   78 (136)
T 1zzo_A           13 LDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--------EVTFVGVAGLD-----QVPAMQEFVNKY-   78 (136)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHHHHHT-
T ss_pred             CCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--------CeEEEEEeCCC-----CHHHHHHHHHHc-
Confidence            467899999999999999999999988866  56888777652        68999998621     233333443322 


Q ss_pred             CC-CceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          412 MM-PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       412 ~M-PWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                      .+ +|-.+.-++       ..+.+.|++.+.|+++++|++|+++
T Consensus        79 ~~~~~~~~~d~~-------~~~~~~~~i~~~P~~~~id~~g~i~  115 (136)
T 1zzo_A           79 PVKTFTQLADTD-------GSVWANFGVTQQPAYAFVDPHGNVD  115 (136)
T ss_dssp             TCTTSEEEECTT-------CHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             CCCceEEEEcCC-------cHHHHHcCCCCCceEEEECCCCCEE
Confidence            23 444333221       2355678999999999999999996

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.52  E-value=6.3e-07  Score=85.03  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=76.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccC---CCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDR---STPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~---s~~w~D~de~~Fe  407 (706)
                      ..+|+.|++++++||.|+|+|.+.||++|.  ++.|.++|+++++      .+++||.|++ |.   ..+++.++-++|-
T Consensus        36 ~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~------~~v~vv~is~-d~~~~~~~~~~~~~~~~~  108 (185)
T 2gs3_A           36 DIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE------CGLRILAFPC-NQFGKQEPGSNEEIKEFA  108 (185)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEEC-CTTTTCCCSCHHHHHHHH
T ss_pred             cCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc------CCeEEEEEEC-cccCCCCCCCHHHHHHHH
Confidence            467889999999999999999999999885  4789999999973      3599999986 21   1123344445563


Q ss_pred             -HhhcCCCcee-eccCCCCCHHHHHHHHHhh---C-----CCCCcEEEEECCCCceecc
Q 005245          408 -ALQYMMPWFS-VHHPSAIDPAVIRYAKEKW---D-----FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 -~~~~~MPWyA-Vpf~~~id~~~~r~ike~~---~-----~~~iP~LVvL~pqGkv~~~  456 (706)
                       .+.-..|.++ +........+..+++++..   +     ++..|..+++|++|+++..
T Consensus       109 ~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          109 AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             HHTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             HHcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence             3333333332 1111111112445554433   3     3346999999999999864

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.52  E-value=4.6e-07  Score=83.21  Aligned_cols=103  Identities=13%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             CCCCceeecceecCcEEEEEEec-CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSD-LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSa-l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|.+++++||.|+|+|-+ .||++|..  +.|.++|+++++      .+++||.|+. |     +.+..++|-.-
T Consensus        22 ~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~vv~vs~-d-----~~~~~~~~~~~   89 (163)
T 3gkn_A           22 LSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK------AGAKILGVSR-D-----SVKSHDNFCAK   89 (163)
T ss_dssp             CSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH------TTCEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence            46788999999999999888887 89887755  689999999974      3599999986 3     34555666553


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCCC------------CcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------------KPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~~------------iP~LVvL~pqGkv~~  455 (706)
                      + .++|..+.-++   .    .+.+.|++..            .|..+++|++|+++.
T Consensus        90 ~-~~~~~~~~d~~---~----~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~  139 (163)
T 3gkn_A           90 Q-GFAFPLVSDGD---E----ALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQ  139 (163)
T ss_dssp             H-CCSSCEEECTT---C----HHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEE
T ss_pred             h-CCCceEEECCc---H----HHHHHhCCccccccccccccCcceEEEEECCCCeEEE
Confidence            3 45555443221   2    3455678876            899999999999985

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.50  E-value=1e-07  Score=87.23  Aligned_cols=106  Identities=9%  Similarity=-0.021  Sum_probs=75.8

Q ss_pred             CCCCceeecceecCc-EEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRK-SVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK-~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ..+|+.|++++++|| .|+|+|- +.||++|..  +.|.++|++++      +.+++||.|++ |     +.+..++|-+
T Consensus        22 ~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~------~~~~~vv~is~-d-----~~~~~~~~~~   89 (160)
T 1xvw_A           22 DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE------NDDSAALAISV-G-----PPPTHKIWAT   89 (160)
T ss_dssp             CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS------SSSEEEEEEES-C-----CHHHHHHHHH
T ss_pred             cCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHH------HCCcEEEEEeC-C-----CHHHHHHHHH
Confidence            457889999999998 8999996 999999865  67888888875      24699999986 3     2344455544


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCC----CCc--EEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----KKP--ILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~iP--~LVvL~pqGkv~~~  456 (706)
                      -+ ..+|..+.-     ......+.+.|++.    ++|  ..+++|++|+++..
T Consensus        90 ~~-~~~~~~~~d-----~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~  137 (160)
T 1xvw_A           90 QS-GFTFPLLSD-----FWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFA  137 (160)
T ss_dssp             HH-TCCSCEEEC-----TTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEE
T ss_pred             hc-CCCceEEec-----CCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEE
Confidence            32 234433322     10012355678998    999  99999999999865

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.49  E-value=1.2e-07  Score=93.06  Aligned_cols=111  Identities=10%  Similarity=0.007  Sum_probs=77.2

Q ss_pred             cCCCCceeecceecCcE-EEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCC--CcChhhHHHH
Q 005245          332 ECPTKRKVSIDVLRRKS-VLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRST--PWTEAKEHKF  406 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~-VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~--~w~D~de~~F  406 (706)
                      ...+|+.|.+++++||. |+|+|.+.||++|..  +.|.++|++++.      .+++||.|++-+...  .-+.+.-++|
T Consensus        44 ~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Vs~d~~~~~~~d~~~~~~~~  117 (218)
T 3u5r_E           44 PDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG------QGLAVVAINSNDAQAFPEETLERVGAE  117 (218)
T ss_dssp             ECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT------TTEEEEEEECSCTTTCGGGSHHHHHHH
T ss_pred             ECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh------CCcEEEEEECCcccccccCCHHHHHHH
Confidence            34788899999999995 999999999988654  789999999962      359999998621100  0123334444


Q ss_pred             HHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          407 EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       407 e~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      -+-+ .++|..+.-+       -..+.+.|++.++|.++++|++|+++..
T Consensus       118 ~~~~-~~~~~~l~D~-------~~~~~~~~~v~~~P~~~liD~~G~i~~~  159 (218)
T 3u5r_E          118 VKAY-GYGFPYLKDA-------SQSVAKAYGAACTPDFFLYDRERRLVYH  159 (218)
T ss_dssp             HHHH-TCCSCEEECT-------TCHHHHHHTCCEESEEEEECTTCBEEEE
T ss_pred             HHHh-CCCccEEECC-------ccHHHHHcCCCCCCeEEEECCCCcEEEe
Confidence            3322 2344333221       1235667899999999999999999843

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.47  E-value=1.7e-06  Score=81.63  Aligned_cols=116  Identities=20%  Similarity=0.297  Sum_probs=79.2

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccC--CCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDR--STPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~--s~~w~D~de~~Fe~  408 (706)
                      ..+|+.|++++++||.|+|+|-+.||++|..  +.|.++|++++.      .+++||-|++-+-  ..+-+.++-++|-.
T Consensus        25 d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~~~vi~is~d~~~~~~~d~~~~~~~~~~   98 (180)
T 3kij_A           25 DAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP------SHFSVLAFPCNQFGESEPRPSKEVESFAR   98 (180)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT------TSEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             cCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc------CCeEEEEEECCccccCCCCCHHHHHHHHH
Confidence            3578899999999999999999999988765  689999999962      3599999986210  00113444555643


Q ss_pred             --hhcCCCceeecc-CCCCCHHHHHHHHHhhCCCCCcE----EEEECCCCceecc
Q 005245          409 --LQYMMPWFSVHH-PSAIDPAVIRYAKEKWDFRKKPI----LVVLDPQGRVVNQ  456 (706)
Q Consensus       409 --~~~~MPWyAVpf-~~~id~~~~r~ike~~~~~~iP~----LVvL~pqGkv~~~  456 (706)
                        +.-..|.++-.. .........+++....  .+.|.    .+++|++|+++..
T Consensus        99 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~p~~~~~~~lid~~G~i~~~  151 (180)
T 3kij_A           99 KNYGVTFPIFHKIKILGSEGEPAFRFLVDSS--KKEPRWNFWKYLVNPEGQVVKF  151 (180)
T ss_dssp             HHHCCCSCBBCCCCCSSTTCCHHHHHHHHHH--TCCCSSTTCEEEECTTSCEEEE
T ss_pred             HhcCCCCceeeeeeccCccccHHHHHHHhcC--CCCccccceEEEECCCCCEEEE
Confidence              444556554211 1111224566766654  47888    9999999999854

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.46  E-value=3.1e-07  Score=86.52  Aligned_cols=108  Identities=9%  Similarity=0.016  Sum_probs=74.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCC---cChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP---WTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~---w~D~de~~Fe  407 (706)
                      ..+|+.+.++.++||.|+|+|.+.||++|..  +.|.++|++.+      +. ++||.|++-+ ...   -+.+.-+.|-
T Consensus        20 ~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~------~~-~~~v~v~~d~-~~~~~~d~~~~~~~~~   91 (188)
T 2cvb_A           20 DPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR------GK-VAFVGINAND-YEKYPEDAPEKMAAFA   91 (188)
T ss_dssp             CTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT------TT-EEEEEEECCC-TTTCGGGSHHHHHHHH
T ss_pred             cCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhh------cC-eEEEEEEcCc-cccccccCHHHHHHHH
Confidence            3578899999999999999999999988754  78999999885      23 9999998621 000   0122333443


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .-+ .++|..+-     |.  ...+.+.|++.+.|+++++|++|+++..
T Consensus        92 ~~~-~~~~~~~~-----d~--~~~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           92 EEH-GIFFPYLL-----DE--TQEVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HHH-TCCSCEEE-----CS--SSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             HHh-CCCceEEE-----CC--cchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            322 23332222     11  1235567899999999999999999866

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.46  E-value=3.3e-07  Score=82.52  Aligned_cols=105  Identities=10%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|..  +.|.+++++.+.      .++.||.|++ |.   -+.+.-++|-.- 
T Consensus        15 ~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~------~~~~vv~v~~-~~---~~~~~~~~~~~~-   83 (153)
T 2l5o_A           15 DLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN------KNFQVLAVAQ-PI---DPIESVRQYVKD-   83 (153)
T ss_dssp             CTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG------TTEEEEEEEC-TT---SCHHHHHHHHHH-
T ss_pred             cCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc------CCeEEEEEec-CC---CCHHHHHHHHHH-
Confidence            3567899999999999999999999999865  679999988862      3699999975 21   123344455332 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      ..+||-.+.-++       ..+.+.|++.+.|+++++|++|+++.
T Consensus        84 ~~~~~~~~~d~~-------~~~~~~~~i~~~P~~~lid~~G~i~~  121 (153)
T 2l5o_A           84 YGLPFTVMYDAD-------KAVGQAFGTQVYPTSVLIGKKGEILK  121 (153)
T ss_dssp             TTCCSEEEECSS-------CHHHHHHTCCSSSEEEEECSSSCCCE
T ss_pred             cCCCceEEcCch-------HHHHHHcCCCccCeEEEECCCCcEEE
Confidence            345654333221       23566789999999999999999874

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.43  E-value=6e-07  Score=84.97  Aligned_cols=100  Identities=16%  Similarity=0.153  Sum_probs=76.4

Q ss_pred             eeecceecCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc---
Q 005245          338 KVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY---  411 (706)
Q Consensus       338 kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~---  411 (706)
                      .+.+++++||.|+|+|- +.||++|.  ++.|.++|++++.      .+++||.|++ |     +.+..+.|-.-+.   
T Consensus        23 ~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~vs~-d-----~~~~~~~~~~~~~~~~   90 (187)
T 1we0_A           23 EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK------LGVEVYSVST-D-----THFVHKAWHENSPAVG   90 (187)
T ss_dssp             EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHHSCHHHH
T ss_pred             EecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHHHHHhcccc
Confidence            99999999999999999 99988764  5789999999973      2699999986 3     1344555655442   


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                      .++|..+.-++       ..+.+.|++.      ..|+.+++|++|+++..
T Consensus        91 ~~~~~~~~d~~-------~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~  134 (187)
T 1we0_A           91 SIEYIMIGDPS-------QTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (187)
T ss_dssp             TCCSEEEECTT-------CHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCCceEEECCc-------hHHHHHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence            56765544321       3445667888      89999999999999865

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.41  E-value=1.8e-07  Score=89.50  Aligned_cols=108  Identities=12%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             CCc---eeeccee-cCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          335 TKR---KVSIDVL-RRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       335 ~~~---kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      +|+   .|+++++ +||.|+|+|. +.||++|  +++.|.++|++++.      .+++||.|++ |     +.+..+.|-
T Consensus        18 ~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~   85 (198)
T 1zof_A           18 NNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE------KGFNVIGVSI-D-----SEQVHFAWK   85 (198)
T ss_dssp             TSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHH
T ss_pred             CCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHHH
Confidence            566   8999999 9999999999 9998776  56889999999973      3699999986 3     133444454


Q ss_pred             Hh-hcCCCceeeccCCCCCHHHHHHHHHhhCCC-----CCcEEEEECCCCceecc
Q 005245          408 AL-QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-----KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 ~~-~~~MPWyAVpf~~~id~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~~  456 (706)
                      +- .....|+.++|+-..|.  .+.+.+.|++.     .+|..+++|++|+++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~  138 (198)
T 1zof_A           86 NTPVEKGGIGQVSFPMVADI--TKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA  138 (198)
T ss_dssp             TSCGGGTCCCCCSSCEEECT--TSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred             HhhhhcccccCceeEEEECC--chHHHHHhCCcccCCcccceEEEECCCCEEEEE
Confidence            32 22223444444422222  23455678998     99999999999999875

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.40  E-value=3.5e-07  Score=87.09  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=77.0

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          335 TK--RKVSIDVL-RRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       335 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +|  +.|+++++ +||.|+|+|- +.||++|  +++.|.++|++++.      .+++||.|++ |     +.+..+.|-.
T Consensus        17 ~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~   84 (192)
T 2h01_A           17 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE------RNVELLGCSV-D-----SKFTHLAWKK   84 (192)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHT
T ss_pred             CCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEe-C-----CHHHHHHHHH
Confidence            56  89999999 9999999999 9998776  55789999999973      3599999986 3     2344455544


Q ss_pred             hhc------CCCceeeccCCCCCHHHHHHHHHhhCCC-----CCcEEEEECCCCceeccc
Q 005245          409 LQY------MMPWFSVHHPSAIDPAVIRYAKEKWDFR-----KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       409 ~~~------~MPWyAVpf~~~id~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~~n  457 (706)
                      -+.      .++|..+.-+       .+.+.+.|++.     ..|..+++|++|+++...
T Consensus        85 ~~~~~~~~~~~~~~~l~D~-------~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~  137 (192)
T 2h01_A           85 TPLSQGGIGNIKHTLISDI-------SKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL  137 (192)
T ss_dssp             SCGGGTCCCSCSSEEEECT-------TSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred             hHHhhCCccCCCcCeEECC-------cHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence            332      4555433322       13456678998     899999999999998653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.38  E-value=1.1e-06  Score=79.26  Aligned_cols=106  Identities=12%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.+.+++++ |.|+|+|.+.||++|..  +.|.++|++.         +++||.|++ |     .+.+.+....+.
T Consensus        18 ~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---------~v~~v~v~~-d-----~~~~~~~~~~~~   81 (154)
T 3ia1_A           18 DPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---------GVPFYVISR-E-----PRDTREVVLEYM   81 (154)
T ss_dssp             CTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---------CCCEEEEEC-C-----TTCCHHHHHHHH
T ss_pred             CCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---------CCeEEEEeC-C-----CcccHHHHHHHH
Confidence            3478899999999 99999999999988766  5788888877         388999986 2     133445555555


Q ss_pred             cCCCceeeccCCCCC-HHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          411 YMMPWFSVHHPSAID-PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       411 ~~MPWyAVpf~~~id-~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      ...++   +|+-..| ......+.+.|++.+.|.++++|++|+++...
T Consensus        82 ~~~~~---~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (154)
T 3ia1_A           82 KTYPR---FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALF  126 (154)
T ss_dssp             TTCTT---EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEE
T ss_pred             HHcCC---CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEE
Confidence            55543   2222222 12356678889999999999999999988643

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.38  E-value=3.7e-07  Score=86.14  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             ceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCC
Q 005245          337 RKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMP  414 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MP  414 (706)
                      +.+.++.++||.|+|+|-+.||++|..  +.|.++|++          +++||.|++-|     +.+.-+.|-+- ...|
T Consensus        49 ~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----------~v~vv~vs~~d-----~~~~~~~~~~~-~~~~  112 (176)
T 3kh7_A           49 RRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----------GVVIYGINYKD-----DNAAAIKWLNE-LHNP  112 (176)
T ss_dssp             SEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----------TCEEEEEEESC-----CHHHHHHHHHH-TTCC
T ss_pred             ceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----------CCEEEEEeCCC-----CHHHHHHHHHH-cCCC
Confidence            789999999999999999999998866  456666543          49999998622     23333344322 2345


Q ss_pred             ceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          415 WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       415 WyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      |..+-...      ...+.+.|++.+.|..+++|++|+++..
T Consensus       113 ~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A          113 YLLSISDA------DGTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             CSEEEEET------TCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             CceEEECC------cchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            54322211      1245567899999999999999999853

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.37  E-value=7.6e-07  Score=81.69  Aligned_cols=113  Identities=15%  Similarity=0.270  Sum_probs=78.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCCh-hHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSN-EEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~-~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+| .+.+++++||.|+|+|.+.||++ |..  +.|.++|++++..   ...+++||+|++ |.. .=+.+.-+.|-+-
T Consensus        23 ~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~---~~~~v~vv~is~-d~~-~d~~~~~~~~~~~   96 (172)
T 2k6v_A           23 GPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPK---AQERVQVIFVSV-DPE-RDPPEVADRYAKA   96 (172)
T ss_dssp             CSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHH---HHTTEEEEEEES-CTT-TCCHHHHHHHHHH
T ss_pred             cCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhh---ccCCEEEEEEEE-CCC-CCCHHHHHHHHHH
Confidence            3567 99999999999999999999997 754  6799999888631   114799999986 320 0012344555543


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhC---------------CCCCcEEEEECCCCceeccc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWD---------------FRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~---------------~~~iP~LVvL~pqGkv~~~n  457 (706)
                      + ..+|..+.-+    ....+.+.+.|+               +.+.|+++++| +|+++...
T Consensus        97 ~-~~~~~~l~d~----~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A           97 F-HPSFLGLSGS----PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             H-CTTEEEECCC----HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             h-CCCcEEEeCC----HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence            3 3677666542    344455555555               46889999999 99998653

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.37  E-value=7.5e-07  Score=85.84  Aligned_cols=101  Identities=13%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             ceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc--
Q 005245          337 RKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY--  411 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~--  411 (706)
                      +.|.+++++||.|+|+|- +.||++|..  +.|.++|+++++      .+++||.|++ |     +.+..++|-+-+.  
T Consensus        27 ~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~------~~v~vi~Is~-D-----~~~~~~~~~~~~~~~   94 (202)
T 1uul_A           27 KKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD------IGCEVLACSM-D-----SEYSHLAWTSIERKR   94 (202)
T ss_dssp             EEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHSCGGG
T ss_pred             cEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHHHHHhh
Confidence            799999999999999999 999998764  689999999972      4699999986 3     2344555544331  


Q ss_pred             ----CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          412 ----MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ----~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                          .++|..+.-+       .+.+.+.|++.      .+|..+++|++|+++..
T Consensus        95 ~~~~~~~~p~l~D~-------~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~  142 (202)
T 1uul_A           95 GGLGQMNIPILADK-------TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  142 (202)
T ss_dssp             TCCCSCSSCEEECT-------TCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             CCCCCCceeEEECC-------chHHHHHcCCccCCCCceeeEEEEECCCCEEEEE
Confidence                4455443322       13455667898      99999999999999865

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.37  E-value=2.1e-06  Score=81.26  Aligned_cols=114  Identities=10%  Similarity=0.115  Sum_probs=80.2

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCCC---hhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh--hhHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVSDLDVS---NEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKF  406 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fSal~~~---~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D--~de~~F  406 (706)
                      -..+|+.|.+++|+||.|+|+|-..||+   +.+++.|.++|+.+++    .+.++.+|+|++ |+   ..|  +.-++|
T Consensus        18 ~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~----~~~~v~~v~isv-Dp---~~Dtp~~l~~y   89 (170)
T 4hde_A           18 TNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE----EKLDVQFVSFSV-DP---DLDKPENLKAF   89 (170)
T ss_dssp             ECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH----TTCCCEEEEEES-CT---TTCCHHHHHHH
T ss_pred             ECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc----ccccceeEeeec-Cc---ccccHHHHHHH
Confidence            3468899999999999999999999985   4456789999999974    456899999986 52   222  233556


Q ss_pred             HHhhc--CCCceeeccCCCCCHHHHHHHHHhhCC----------CCCcEEEEECCCCceec
Q 005245          407 EALQY--MMPWFSVHHPSAIDPAVIRYAKEKWDF----------RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       407 e~~~~--~MPWyAVpf~~~id~~~~r~ike~~~~----------~~iP~LVvL~pqGkv~~  455 (706)
                      -+.+.  ...|..+--++  .....+..+..|..          ..-|.++++||+|+++.
T Consensus        90 ~~~~~~~~~~~~~ltg~~--~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~  148 (170)
T 4hde_A           90 IQKFTEDTSNWNLLTGYS--LEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMK  148 (170)
T ss_dssp             HTTTCSCCTTEEEEBCSC--HHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEE
T ss_pred             HHHcCCCCCCceecCccc--HHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEE
Confidence            54442  24587666543  23344555555543          33478999999999974

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.35  E-value=1.9e-06  Score=86.68  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=81.1

Q ss_pred             CCCCcccc-----CCCCceeecceecCcEEEEEEec-CCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCC
Q 005245          325 DDQLPLVE-----CPTKRKVSIDVLRRKSVLLLVSD-LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRST  396 (706)
Q Consensus       325 ~~~~pl~d-----g~~~~kV~Is~L~gK~VlL~fSa-l~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~  396 (706)
                      ++..|-|.     ..+|+.|++++++||.|+|+|=+ .||++|..  +.|.++|+++++      .+++||.||. |   
T Consensus        51 G~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~------~gv~vv~Is~-D---  120 (240)
T 3qpm_A           51 SKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA------INTEVVACSV-D---  120 (240)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT------TTEEEEEEES-S---
T ss_pred             CCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEEC-C---
Confidence            34455555     33466999999999999999988 88887654  789999999973      3599999985 4   


Q ss_pred             CcChhhHHHHHHhh------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          397 PWTEAKEHKFEALQ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       397 ~w~D~de~~Fe~~~------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                        +.+..+.|-.-.      ..+||..+.-++       +.+.+.|++.      ..|..+++|++|+++..
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~-------~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~  183 (240)
T 3qpm_A          121 --SQFTHLAWIITPRKQGGLGPMKIPLLSDLT-------HQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQI  183 (240)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCSCSSCEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             --CHHHHHHHHHHHHhhcCCCCCceeEEeCch-------HHHHHHhCCccccCCCccceEEEEcCCCeEEEE
Confidence              244455665432      145655443322       3455667886      57999999999999865

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.35  E-value=6.5e-07  Score=88.25  Aligned_cols=105  Identities=13%  Similarity=0.112  Sum_probs=77.6

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.+|+.|.+++++||.|+|+|- +.||++|.  ++.|.++|++++.      .+++||.|++ |     +.++.+.|-+-
T Consensus        43 ~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~~  110 (220)
T 1zye_A           43 SGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD------VNCEVVAVSV-D-----SHFSHLAWINT  110 (220)
T ss_dssp             SSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTS
T ss_pred             CCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            4578899999999999999999 99988765  4789999999973      3599999986 3     13344455432


Q ss_pred             h-c-----CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          410 Q-Y-----MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~-~-----~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                      . .     .++|..+.-+       .+.+.+.|++.      ..|.++++|++|+++..
T Consensus       111 ~~~~~g~~~~~fp~l~D~-------~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~  162 (220)
T 1zye_A          111 PRKNGGLGHMNIALLSDL-------TKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  162 (220)
T ss_dssp             CGGGTCCCSCSSEEEECT-------TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHhCCCcCCceEEEECC-------cHHHHHHhCCeecCCCcccceEEEECCCCEEEEE
Confidence            2 1     4455433221       23456678998      99999999999999864

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.34  E-value=8.7e-07  Score=84.11  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=73.7

Q ss_pred             CCCceeecceecCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          334 PTKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      .+|+.|.+++++||.|+|+|- +.||++|.  ++.|.++|+++++      .+++||.|+. |     +.++.++|-+-+
T Consensus        39 ~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~------~~~~vv~Vs~-D-----~~~~~~~~~~~~  106 (179)
T 3ixr_A           39 SGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ------INATVLGVSR-D-----SVKSHDSFCAKQ  106 (179)
T ss_dssp             GGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-C-----CHHHHHHHHHHH
T ss_pred             CCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHHc
Confidence            467899999999998888876 99987764  4789999999973      3699999986 4     245566675432


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCC------------CcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------------KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~------------iP~LVvL~pqGkv~~~  456 (706)
                       .++|..+.-++   .    .+.+.|++..            .|..+++||+|+++..
T Consensus       107 -~~~f~~l~D~~---~----~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~  156 (179)
T 3ixr_A          107 -GFTFPLVSDSD---A----ILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEA  156 (179)
T ss_dssp             -TCCSCEEECTT---C----HHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred             -CCceEEEECCc---h----HHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEE
Confidence             34544333221   2    3445566643            6899999999999863

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.34  E-value=1.5e-06  Score=86.44  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          335 TK--RKVSIDVL-RRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       335 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +|  +.|+++++ +||.|+|+|- +.||++|  +++.|.++|+++++      .+++||.|++ |     +.+..+.|-+
T Consensus        42 ~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~  109 (221)
T 2c0d_A           42 NNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN------KNVELLGISV-D-----SVYSHLAWKN  109 (221)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHH
T ss_pred             CCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHH
Confidence            56  89999999 9999999999 9998765  55789999999973      3699999986 4     2444556655


Q ss_pred             hhc------CCCceeeccCCCCCHHHHHHHHHhhCC-----CCCcEEEEECCCCceecc
Q 005245          409 LQY------MMPWFSVHHPSAIDPAVIRYAKEKWDF-----RKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~------~MPWyAVpf~~~id~~~~r~ike~~~~-----~~iP~LVvL~pqGkv~~~  456 (706)
                      -+.      .++|..+--+       ...+.+.|++     ...|..+++|++|+++..
T Consensus       110 ~~~~~~g~~~~~fp~l~D~-------~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~  161 (221)
T 2c0d_A          110 MPIEKGGIGNVEFTLVSDI-------NKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQ  161 (221)
T ss_dssp             SCGGGTCCCSCSSEEEECT-------TSHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             HhhhhcCccCCceEEEECC-------chHHHHHcCCcccCCCccceEEEECCCCeEEEE
Confidence            442      4455433221       1234566787     368999999999999865

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.32  E-value=1.6e-06  Score=85.25  Aligned_cols=103  Identities=12%  Similarity=0.099  Sum_probs=78.1

Q ss_pred             CC--ceeeccee-cCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          335 TK--RKVSIDVL-RRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       335 ~~--~kV~Is~L-~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +|  +.|.++++ +||.|+|+|- +.||++|..  +.|.++|+++++      .+++||.|++ |     +.+..++|-+
T Consensus        38 ~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~  105 (213)
T 2i81_A           38 DNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE------RNVELLGCSV-D-----SKYTHLAWKK  105 (213)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHS
T ss_pred             CCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHH
Confidence            56  79999999 9999999999 999988755  679999999973      3699999986 3     2344455554


Q ss_pred             hhc------CCCceeeccCCCCCHHHHHHHHHhhCCC-----CCcEEEEECCCCceecc
Q 005245          409 LQY------MMPWFSVHHPSAIDPAVIRYAKEKWDFR-----KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~------~MPWyAVpf~~~id~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~~  456 (706)
                      -+.      .++|..+--+       .+.+.+.|++.     ..|..+++|++|+++..
T Consensus       106 ~~~~~~g~~~~~fp~l~D~-------~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~  157 (213)
T 2i81_A          106 TPLAKGGIGNIKHTLLSDI-------TKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHL  157 (213)
T ss_dssp             SCGGGTCCCSCSSEEEECT-------TSHHHHHTTCEETTTEECEEEEEECTTSBEEEE
T ss_pred             HHHhhCCccCCCceEEECC-------chHHHHHhCCccccCCcccEEEEECCCCEEEEE
Confidence            332      5666544322       23456678998     89999999999999865

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.32  E-value=3.8e-07  Score=86.06  Aligned_cols=109  Identities=8%  Similarity=0.049  Sum_probs=75.5

Q ss_pred             CCCCceeecceecCcE-EEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCC---cChhhHHHH
Q 005245          333 CPTKRKVSIDVLRRKS-VLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP---WTEAKEHKF  406 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~-VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~---w~D~de~~F  406 (706)
                      ..+|+.+.+++++||. |+|+|.+.||++|..  +.|.++|++.+.      .+++||.|++ |....   -+.+.-+.|
T Consensus        32 ~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~------~~v~vv~v~~-d~~~~~~~d~~~~~~~~  104 (196)
T 2ywi_A           32 VIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMP------KGVSFVAINS-NDAEQYPEDSPENMKKV  104 (196)
T ss_dssp             TTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG------GTCEEEEEEC-SCTTTCGGGSHHHHHHH
T ss_pred             cCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh------CCcEEEEEEC-CccccccccCHHHHHHH
Confidence            5678999999999995 999999999988754  689999999863      2599999986 21000   123334444


Q ss_pred             HHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          407 EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       407 e~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      -.-+ ..+|..+--+   +.    .+.+.|++.+.|+++++|++|+++..
T Consensus       105 ~~~~-~~~~~~~~d~---~~----~~~~~~~v~~~P~~~lid~~G~i~~~  146 (196)
T 2ywi_A          105 AEEL-GYPFPYLYDE---TQ----EVAKAYDAACTPDFYIFDRDLKCVYR  146 (196)
T ss_dssp             HHHH-TCCSCEEECS---SC----HHHHHHTCCEESEEEEEETTCBEEEE
T ss_pred             HHHc-CCCceEEECC---ch----HHHHHhCCCCCCeEEEEcCCCeEEEc
Confidence            3322 2333322221   12    34556799999999999999999865

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.30  E-value=3.7e-06  Score=82.44  Aligned_cols=129  Identities=10%  Similarity=0.023  Sum_probs=81.6

Q ss_pred             ccCCCCCcccc--CCC-CceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccC--
Q 005245          322 HTKDDQLPLVE--CPT-KRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDR--  394 (706)
Q Consensus       322 ~~k~~~~pl~d--g~~-~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~--  394 (706)
                      ..+....|-|.  ..+ |+.|.+++++||.|+|+|-+.||++|.  ++.|.++|++.+.      .+++||-||+-+.  
T Consensus        20 ~~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~------~g~~vv~v~~d~~~~   93 (208)
T 2f8a_A           20 FQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP------RGLVVLGFPCNQFGH   93 (208)
T ss_dssp             --CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTT
T ss_pred             hhhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC------CCeEEEEEECCcccc
Confidence            34444344433  234 889999999999999999999998875  5889999999973      3599999986200  


Q ss_pred             CCCcChhhHHHHHHh-----hcCCCceeeccCC---CCCHHHHHHHHHhhC-------------------------CCCC
Q 005245          395 STPWTEAKEHKFEAL-----QYMMPWFSVHHPS---AIDPAVIRYAKEKWD-------------------------FRKK  441 (706)
Q Consensus       395 s~~w~D~de~~Fe~~-----~~~MPWyAVpf~~---~id~~~~r~ike~~~-------------------------~~~i  441 (706)
                      ..+-+.++-+.|-.+     ....++-.+.-.+   ....+..+++++.+.                         ++..
T Consensus        94 ~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  173 (208)
T 2f8a_A           94 QENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWN  173 (208)
T ss_dssp             TTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCST
T ss_pred             cCCCCHHHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccC
Confidence            001123445566542     2233332221000   001246677776542                         4556


Q ss_pred             cEEEEECCCCceecc
Q 005245          442 PILVVLDPQGRVVNQ  456 (706)
Q Consensus       442 P~LVvL~pqGkv~~~  456 (706)
                      |+.+++|++|+++..
T Consensus       174 p~tflID~~G~i~~~  188 (208)
T 2f8a_A          174 FEKFLVGPDGVPLRR  188 (208)
T ss_dssp             TCEEEECTTSCEEEE
T ss_pred             ceEEEEcCCCcEEEE
Confidence            999999999999864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=98.29  E-value=3.9e-06  Score=81.31  Aligned_cols=153  Identities=12%  Similarity=0.103  Sum_probs=95.4

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++++.    .+.++.++-|-.        |+.                   
T Consensus        30 ~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~vd~--------~~~-------------------   78 (241)
T 3idv_A           30 ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD----KDPPIPVAKIDA--------TSA-------------------   78 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHT----SSSCCCEEEEET--------TTC-------------------
T ss_pred             hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhh----cCCceEEEEEec--------cCC-------------------
Confidence            36899999999999999876  689999999873    234466666532        111                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhhc---ccc--cccccccCC
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEE---TWR--IDLLADSVD  496 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e---~w~--lelLvd~id  496 (706)
                              +.+.+.|++++.|++++++ +|+.+...        |    +.+.+.+.+.-++.   .|.  .+.+..-.+
T Consensus        79 --------~~l~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~  137 (241)
T 3idv_A           79 --------SVLASRFDVSGYPTIKILK-KGQAVDYE--------G----SRTQEEIVAKVREVSQPDWTPPPEVTLVLTK  137 (241)
T ss_dssp             --------HHHHHHTTCCSSSEEEEEE-TTEEEECC--------S----CSCHHHHHHHHHHHHSTTCCCCCCSSEECCT
T ss_pred             --------HHHHHhcCCCcCCEEEEEc-CCCccccc--------C----cccHHHHHHHHhhccCcccccccccceeccH
Confidence                    1366788999999999996 57665322        2    23333333322221   121  111111011


Q ss_pred             CCccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHh---CCceeEEEeccCCc
Q 005245          497 PVIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAA---GIALEMLYVGKSNP  548 (706)
Q Consensus       497 ~~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~---~~~~E~v~Vgkdn~  548 (706)
                      ..+...+..++.++++|.+.+ ..|+.+.+.+.++++..   +..+.++.|..+..
T Consensus       138 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~  193 (241)
T 3idv_A          138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAE  193 (241)
T ss_dssp             TTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTC
T ss_pred             HHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCC
Confidence            223344668899999999932 33599999999887753   33477777776644

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.28  E-value=4e-06  Score=79.25  Aligned_cols=113  Identities=16%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCC-CC-cChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-TP-WTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s-~~-w~D~de~~Fe~  408 (706)
                      ..+|+.+.+++++||.|+|+|.+.||++|..  +.|.++|++++.      .+++||.|++-+.. .+ =+.++-++|-+
T Consensus        36 ~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~------~~v~vv~vs~d~~~~~e~~~~~~~~~~~~  109 (181)
T 2p31_A           36 NIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP------HHFNVLAFPCNQFGQQEPDSNKEIESFAR  109 (181)
T ss_dssp             BTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHHHHHH
T ss_pred             cCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc------CCEEEEEEECcCCCCCCCCCHHHHHHHHH
Confidence            3567899999999999999999999998864  789999999973      35999999862100 00 02334445543


Q ss_pred             --hhcCCCcee-eccCCCCCHHHHHHHHHhhCCCCCc-------EEEEECCCCceecc
Q 005245          409 --LQYMMPWFS-VHHPSAIDPAVIRYAKEKWDFRKKP-------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 --~~~~MPWyA-Vpf~~~id~~~~r~ike~~~~~~iP-------~LVvL~pqGkv~~~  456 (706)
                        +.-..|.++ +........+..++.     +++.|       ..+++|++|+++..
T Consensus       110 ~~~~~~~p~~~~~d~~g~~~~~~~~~~-----~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          110 RTYSVSFPMFSKIAVTGTGAHPAFKYL-----AQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             HHHCCCSCBBCCCCCSSTTSCHHHHHH-----HHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             hhcCCCceeEeecccCCccchhhhhhh-----hhcCCCccccceeEEEEcCCCCEEEE
Confidence              333344433 111110011122333     33457       89999999999864

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.28  E-value=1.1e-06  Score=86.34  Aligned_cols=104  Identities=12%  Similarity=0.043  Sum_probs=75.3

Q ss_pred             CCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      +|+.|.+++++||.|+|+|- +.||++|..  +.|.++|+++++      .+++||.|++ |     +.+..+.|-+-+.
T Consensus        37 ~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~------~~v~vv~Is~-D-----~~~~~~~~~~~~~  104 (211)
T 2pn8_A           37 EFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS------INTEVVACSV-D-----SQFTHLAWINTPR  104 (211)
T ss_dssp             EEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHTSCG
T ss_pred             CCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHHhh
Confidence            45799999999999999998 999987654  789999999973      4699999986 4     2334455654331


Q ss_pred             ------CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceeccc
Q 005245          412 ------MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       412 ------~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n  457 (706)
                            .++|..+-     |.  .+.+.+.|++.      ..|..+++|++|+++...
T Consensus       105 ~~~g~~~~~fp~l~-----D~--~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~  155 (211)
T 2pn8_A          105 RQGGLGPIRIPLLS-----DL--THQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  155 (211)
T ss_dssp             GGTCCCSCSSCEEE-----CT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             hccCccCCceEEEE-----CC--chHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence                  34443332     21  13455667874      599999999999998653

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.25  E-value=2.5e-06  Score=76.79  Aligned_cols=101  Identities=15%  Similarity=0.129  Sum_probs=69.7

Q ss_pred             ceeecceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245          337 RKVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF  416 (706)
Q Consensus       337 ~kV~Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy  416 (706)
                      +.+.+++++||.|+|+|.+.||++|..  ....++++.+    . +++++|.|++-+     +.+.-++|-.-+ .++|.
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~--~~~~l~~l~~----~-~~v~~v~v~~~~-----~~~~~~~~~~~~-~~~~~   99 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHD--EAPLLTELGK----D-KRFQLVGINYKD-----AADNARRFLGRY-GNPFG   99 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHH--HHHHHHHHTT----C-TTSEEEEEEESC-----CHHHHHHHHHHH-CCCCS
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHH--HHHHHHHHHh----c-CCeEEEEEECCC-----CHHHHHHHHHHc-CCCCc
Confidence            789999999999999999999999865  2233344432    1 469999998622     233444554332 45665


Q ss_pred             eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+-...      ...+.+.|++.+.|+.+++|++|+++..
T Consensus       100 ~~~~d~------~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A          100 RVGVDA------NGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             EEEEET------TSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             eeeeCc------hhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence            443321      1245677899999999999999998753

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.22  E-value=1.3e-06  Score=93.29  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=75.7

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ..+|+.|.+++++||.|+|+|.+.||++|..  +.|.++|++++.      .+++||.|++-+....=+.++-++|-.- 
T Consensus        69 d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~------~~v~vi~Vs~d~~~~~d~~~~~~~~~~~-  141 (352)
T 2hyx_A           69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD------SGLAVIGVHTPEYAFEKVPGNVAKGAAN-  141 (352)
T ss_dssp             SGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEECCSSGGGGCHHHHHHHHHH-
T ss_pred             CCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc------CCeEEEEEECCcccccCCHHHHHHHHHH-
Confidence            3567799999999999999999999988865  689999999963      3599999975110000012233344322 


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..++|-.+--     .  ...+.+.|++.+.|+++++|++|+++..
T Consensus       142 ~~l~fpv~~D-----~--~~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          142 LGISYPIALD-----N--NYATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             HTCCSCEEEC-----T--TSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             cCCCccEEeC-----C--cHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence            2344432221     1  1235667899999999999999999865

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.20  E-value=5e-06  Score=76.50  Aligned_cols=100  Identities=18%  Similarity=0.079  Sum_probs=69.5

Q ss_pred             CCceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      +|..+..+.+ +||.|+|+|.+.||++|..  +.|.+++++          +++||.|++-+     +.+...+|-.-+ 
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----------~v~vv~v~~~~-----~~~~~~~~~~~~-  102 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----------GIRVVGMNYKD-----DRQKAISWLKEL-  102 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----------TCCEEEEEESC-----CHHHHHHHHHHH-
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----------CCEEEEEECCC-----ChHHHHHHHHHc-
Confidence            6778888885 9999999999999999865  445554432          58999998722     233444554322 


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..||..+-...      ...+.+.|++.+.|+.+++|++|+++..
T Consensus       103 ~~~~~~~~~d~------~~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A          103 GNPYALSLFDG------DGMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             CCCCSEEEEET------TCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             CCCCceeeECc------chHHHHHcCccccCEEEEECCCCeEEEE
Confidence            45664322211      1235667899999999999999999853

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.20  E-value=1.2e-05  Score=79.07  Aligned_cols=117  Identities=10%  Similarity=0.094  Sum_probs=75.9

Q ss_pred             CC-CceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHHHh
Q 005245          334 PT-KRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~-~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe~~  409 (706)
                      .+ |+.|++++++||.|+|+|-+.||++| +++.|.++|++.+.      .+++||-||+-+  ...+-+.++-+.|-.+
T Consensus        25 ~~~G~~v~Ls~~kGKvvll~F~At~C~~c~e~p~L~~l~~~~~~------~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~   98 (207)
T 2r37_A           25 IDGEEYIPFKQYAGKYVLFVNVASYGGLTGQYIELNALQEELAP------FGLVILGFPCNQFGKQEPGENSEILPTLKY   98 (207)
T ss_dssp             TTSSCEEEGGGGTTSEEEEEEECSSSTTTTHHHHHHHHHHHHGG------GTEEEEEEECCCBTTCCCSCHHHHHHHHHH
T ss_pred             CCCCCEEcHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHhcc------CCEEEEEEECcccCcCCCCCHHHHHHHHHh
Confidence            45 88999999999999999999998876 55789999999973      359999999511  0011233445566542


Q ss_pred             -----hcC--CCceeeccCC-CCCHHHHHHHHHhhC---------------------CCCCcEEEEECCCCceecc
Q 005245          410 -----QYM--MPWFSVHHPS-AIDPAVIRYAKEKWD---------------------FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 -----~~~--MPWyAVpf~~-~id~~~~r~ike~~~---------------------~~~iP~LVvL~pqGkv~~~  456 (706)
                           ...  .|.++-.-.+ ....+..+++++...                     ++..|+-+++|++|+++..
T Consensus        99 ~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~  174 (207)
T 2r37_A           99 VRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMR  174 (207)
T ss_dssp             TSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             cchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEE
Confidence                 223  3433211100 001235667765432                     1223789999999999864

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.19  E-value=1.1e-05  Score=80.11  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             CC-CceeecceecCcEEEEEEecCCCChh-HHHHHHHHHHHHhhcccCCCCCeEEEEEeccc--CCCCcChhhHHHHHH-
Q 005245          334 PT-KRKVSIDVLRRKSVLLLVSDLDVSNE-ELFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFEA-  408 (706)
Q Consensus       334 ~~-~~kV~Is~L~gK~VlL~fSal~~~~~-e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd--~s~~w~D~de~~Fe~-  408 (706)
                      .+ |+.|++++++||.|+|+|-|.||++| +.+.|.++|++.+.      .+++||-||+=+  ...+-+.++-++|-+ 
T Consensus        43 ~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~e~p~L~~l~~~~~~------~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~  116 (215)
T 2i3y_A           43 LNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEELKP------YGLVVLGFPCNQFGKQEPGDNKEILPGLKY  116 (215)
T ss_dssp             SSSSCEEEGGGGTTSEEEEEEECSSSGGGGGHHHHHHHHHHHGG------GTEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             CCCCCEEcHHHhCCCEEEEEEeCCCCCChHhHHHHHHHHHHhcc------CCeEEEEEEccccCcCCCCCHHHHHHHHHh
Confidence            45 88999999999999999999998776 56789999999973      359999999621  011223445566754 


Q ss_pred             ------hhcCCCceeeccCC-CCCHHHHHHHHHhhC---------------------CCCCcEEEEECCCCceecc
Q 005245          409 ------LQYMMPWFSVHHPS-AIDPAVIRYAKEKWD---------------------FRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ------~~~~MPWyAVpf~~-~id~~~~r~ike~~~---------------------~~~iP~LVvL~pqGkv~~~  456 (706)
                            +.-..|.++-.-.. ....++.+++++...                     ++..|+-+++|++|+++..
T Consensus       117 ~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~  192 (215)
T 2i3y_A          117 VRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMR  192 (215)
T ss_dssp             TSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEE
T ss_pred             ccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEE
Confidence                  22234444311100 001245677765421                     1223789999999999865

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.17  E-value=1.1e-06  Score=81.27  Aligned_cols=103  Identities=12%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-CChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.+++++++||.|+|+|-+.| |++|..  +.|.++|+++        .+++||.|++ |     +.+..++|-+-
T Consensus        31 ~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--------~~~~vv~is~-d-----~~~~~~~~~~~   96 (167)
T 2jsy_A           31 TNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--------GDVNVYTISA-D-----LPFAQARWCGA   96 (167)
T ss_dssp             BTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--------SSCEEEEEEC-S-----SGGGTSCCGGG
T ss_pred             CCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--------CCCEEEEEEC-C-----CHHHHHHHHHh
Confidence            4678899999999999999999999 877754  7899999988        2489999986 3     12222333322


Q ss_pred             hcCC-Cceeecc-CCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCceeccc
Q 005245          410 QYMM-PWFSVHH-PSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~M-PWyAVpf-~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~n  457 (706)
                      + .+ +|..+.- +       ...+.+.|++..      .|..+++|++|+++...
T Consensus        97 ~-~~~~~~~~~d~~-------~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A           97 N-GIDKVETLSDHR-------DMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             S-SCTTEEEEEGGG-------TCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             c-CCCCceEeeCCc-------hhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            2 22 3332221 1       123455678876      39999999999998654

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.14  E-value=7.7e-06  Score=78.17  Aligned_cols=103  Identities=14%  Similarity=0.105  Sum_probs=74.4

Q ss_pred             CC--ceeecceecCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          335 TK--RKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       335 ~~--~kV~Is~L~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +|  +.|.+++++||.|+|+|= +.||++|.  ++.|.++|+++++      .+++||.|+. |     +.+..+.|-+-
T Consensus        17 ~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~~   84 (186)
T 1n8j_A           17 NGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK------LGVDVYSVST-D-----THFTHKAWHSS   84 (186)
T ss_dssp             TTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            46  799999999999999985 58998765  4789999999973      3599999986 4     24445667554


Q ss_pred             hc---CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          410 QY---MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~---~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                      +.   .++|..+.-++   .    .+.+.|++.      ..|..+++|++|+++..
T Consensus        85 ~~~~~~~~fp~l~D~~---~----~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~  133 (186)
T 1n8j_A           85 SETIAKIKYAMIGDPT---G----ALTRNFDNMREDEGLADRATFVVDPQGIIQAI  133 (186)
T ss_dssp             CTTGGGCCSEEEECTT---S----HHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             cCcccCCceeEEECCc---h----HHHHHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence            42   45554443221   2    244567776      26999999999999865

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.12  E-value=2.5e-06  Score=80.42  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.+.+++++||.|+|+|-+.| |++|  +++.|.++|++ +        +++||.|++ |     +.+..++|-+-
T Consensus        31 ~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~--------~v~vv~Is~-D-----~~~~~~~~~~~   95 (175)
T 1xvq_A           31 GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA-S--------GATVLCVSK-D-----LPFAQKRFCGA   95 (175)
T ss_dssp             CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T--------TCEEEEEES-S-----CHHHHTTCC--
T ss_pred             CCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c--------CCEEEEEEC-C-----CHHHHHHHHHH
Confidence            4578899999999999999999998 6655  55789999987 2        489999986 3     12222333221


Q ss_pred             hcCC-CceeeccCCCCCHHHHHHHHHhhCCCCC---------cEEEEECCCCceeccc
Q 005245          410 QYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRKK---------PILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~i---------P~LVvL~pqGkv~~~n  457 (706)
                      + .+ +|..+.-+     .  +.+.+.|++...         |..+++|++|+++...
T Consensus        96 ~-~~~~~~~l~D~-----~--~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           96 E-GTENVMPASAF-----R--DSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             -----CEEEEECT-----T--SSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             c-CCCCceEeeCC-----H--HHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence            1 22 33322221     1  345566788776         9999999999998654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.11  E-value=8.1e-06  Score=75.91  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|++++++||.|+|+|= +.||++|  +++.|.++|++         .+++||.|+. |     +.+..++|-+-
T Consensus        33 ~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---------~~~~vv~is~-d-----~~~~~~~~~~~   97 (166)
T 3p7x_A           33 DNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---------EEGIVLTISA-D-----LPFAQKRWCAS   97 (166)
T ss_dssp             CTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---------TTSEEEEEES-S-----CHHHHHHHHHH
T ss_pred             cCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            4578899999999998888886 7888877  44678777765         3599999985 4     35566677654


Q ss_pred             hcCC-CceeeccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCceecc
Q 005245          410 QYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~  456 (706)
                      + .+ +|..+--+.  +.    .+.+.|++..      .|..+++|++|+++..
T Consensus        98 ~-~~~~~~~l~D~~--~~----~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~  144 (166)
T 3p7x_A           98 A-GLDNVITLSDHR--DL----SFGENYGVVMEELRLLARAVFVLDADNKVVYK  144 (166)
T ss_dssp             H-TCSSCEEEECTT--TC----HHHHHHTCEETTTTEECCEEEEECTTCBEEEE
T ss_pred             c-CCCceEEccCCc--hh----HHHHHhCCccccCCceeeEEEEECCCCeEEEE
Confidence            3 34 444333220  11    3455668775      8999999999999864

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.08  E-value=1.4e-05  Score=74.09  Aligned_cols=103  Identities=11%  Similarity=0.063  Sum_probs=72.2

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|++++++||.|+|+|= +.||++|..  +.|.++|+++        .+++||.|+. |     +.+..+.|-+-
T Consensus        29 ~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--------~~v~vv~is~-d-----~~~~~~~~~~~   94 (163)
T 1psq_A           29 TTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--------DNTVVLTVSM-D-----LPFAQKRWCGA   94 (163)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--------TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             cCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--------CCcEEEEEEC-C-----CHHHHHHHHHh
Confidence            4578899999999999999996 589877654  6788887765        3599999986 4     24445667554


Q ss_pred             hcCC-Cceeecc-CCCCCHHHHHHHHHhhCCC----CC--cEEEEECCCCceeccc
Q 005245          410 QYMM-PWFSVHH-PSAIDPAVIRYAKEKWDFR----KK--PILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~M-PWyAVpf-~~~id~~~~r~ike~~~~~----~i--P~LVvL~pqGkv~~~n  457 (706)
                      + .. +|..+.- ++       ..+.+.|++.    +.  |..+++|++|+++...
T Consensus        95 ~-~~~~~~~l~D~~~-------~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           95 E-GLDNAIMLSDYFD-------HSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             H-TCTTSEEEECTTT-------CHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             c-CCCCcEEecCCch-------hHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            3 34 4433322 11       2344556776    44  9999999999998653

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.05  E-value=6.9e-06  Score=83.58  Aligned_cols=113  Identities=12%  Similarity=0.068  Sum_probs=78.9

Q ss_pred             CCCCcccc-----CCCCceeecceecCcEEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCC
Q 005245          325 DDQLPLVE-----CPTKRKVSIDVLRRKSVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRST  396 (706)
Q Consensus       325 ~~~~pl~d-----g~~~~kV~Is~L~gK~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~  396 (706)
                      ++..|-|.     ..+|+.|++++++||.|+|+|= +.||++  .+++.|.++|+++++      .+++||.|+. |   
T Consensus        65 G~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~------~gv~vv~IS~-D---  134 (254)
T 3tjj_A           65 SKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS------INTEVVACSV-D---  134 (254)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT------TTEEEEEEES-S---
T ss_pred             CCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH------cCCEEEEEcC-C---
Confidence            33445555     3357899999999999999886 888765  466789999999973      3599999985 4   


Q ss_pred             CcChhhHHHHHHhh------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceecc
Q 005245          397 PWTEAKEHKFEALQ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       397 ~w~D~de~~Fe~~~------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~  456 (706)
                        +.++...|-+-.      ..++|..+.-++       +.+.+.|++.      ..|..+|+|++|++...
T Consensus       135 --~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~-------~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~  197 (254)
T 3tjj_A          135 --SQFTHLAWINTPRRQGGLGPIRIPLLSDLT-------HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQI  197 (254)
T ss_dssp             --CHHHHHHHHTSCGGGTSCCSCSSCEEECTT-------SHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             --CHHHHHHHHHHHHHhcCCcccccceeeCcH-------HHHHHHcCCccccCCCccceEEEECCCCeEEEE
Confidence              244555664422      145554443322       2445566774      47999999999999865

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.04  E-value=5.5e-06  Score=77.09  Aligned_cols=104  Identities=14%  Similarity=0.170  Sum_probs=70.9

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|++++++||.|+|+|= +.||++|..  +.|.+.|++.+      ..++++|-|+. |     +.+..++|-+-
T Consensus        17 ~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~------~~~~~~v~vs~-d-----~~~~~~~~~~~   84 (157)
T 4g2e_A           17 DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN------QVNAVVLGISV-D-----PPFSNKAFKEH   84 (157)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGG------GCSSEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhccccccccc------ccCceEeeecc-c-----chhHHHHHHHH
Confidence            4678899999999999999986 999988754  56888888876      34689999985 4     24556677542


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC-----------CCcEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-----------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~-----------~iP~LVvL~pqGkv~~~  456 (706)
                       ..+||-.+--++   .+    +.+.|++.           ..|+..|+|++|++...
T Consensus        85 -~~~~~p~l~D~~---~~----v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~  134 (157)
T 4g2e_A           85 -NKLNFTILSDYN---RE----VVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYK  134 (157)
T ss_dssp             -TTCCSEEEECTT---SH----HHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEE
T ss_pred             -cCCcEEEEEcCC---cH----HHHHcCCccccccCCCcceeeeeEEEECCCCEEEEE
Confidence             355665443222   22    34455552           35788999999999743

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.02  E-value=1.9e-05  Score=70.62  Aligned_cols=80  Identities=9%  Similarity=0.075  Sum_probs=61.7

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      ..+.++.++.++||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++.        
T Consensus        39 ~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~~--------   95 (141)
T 3hxs_A           39 YENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA-------GKIYIYKVNV--------DKEP--------   95 (141)
T ss_dssp             CSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTCH--------
T ss_pred             cccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CceEEEEEEC--------CCCH--------
Confidence            345678888999999999999999999876  56777777764       2467777643        2211        


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                         .+.+.|++++.|++++++++|+++.
T Consensus        96 -------------------~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           96 -------------------ELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             -------------------HHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             -------------------HHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                               2567789999999999999999763

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.02  E-value=1.8e-05  Score=72.80  Aligned_cols=102  Identities=17%  Similarity=0.277  Sum_probs=72.9

Q ss_pred             CCCCceeecceecCc--EEEEEE-ecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVLRRK--SVLLLV-SDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L~gK--~VlL~f-Sal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      ..+|+.|.+++++||  .|+|+| .+.||++|.  ++.|.++|+++++      .. +||.|+. |     +.+..+.|-
T Consensus        20 ~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~-~vv~is~-d-----~~~~~~~~~   86 (159)
T 2a4v_A           20 NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE------YA-AVFGLSA-D-----SVTSQKKFQ   86 (159)
T ss_dssp             CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT------TC-EEEEEES-C-----CHHHHHHHH
T ss_pred             CCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHh------CC-cEEEEeC-C-----CHHHHHHHH
Confidence            457889999999998  788887 699988765  4789999999973      23 9999985 3     244455665


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCc------EEEEECCCCceecc
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP------ILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP------~LVvL~pqGkv~~~  456 (706)
                      +-+ .++|..+--++       ..+.+.|++...|      ..+++ ++|+++..
T Consensus        87 ~~~-~~~~~~l~D~~-------~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~  132 (159)
T 2a4v_A           87 SKQ-NLPYHLLSDPK-------REFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFK  132 (159)
T ss_dssp             HHH-TCSSEEEECTT-------CHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred             HHh-CCCceEEECCc-------cHHHHHhCCcccccCCccceEEEE-cCCEEEEE
Confidence            433 35554443221       2355678999888      77778 99999865

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.97  E-value=5.4e-06  Score=80.64  Aligned_cols=103  Identities=16%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|++++++||.|+|+|= +.||++|  +++.|.++|+++        .+++||.|+. |     +.+..++|-+-
T Consensus        65 d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--------~~v~vv~Is~-D-----~~~~~~~~~~~  130 (200)
T 3zrd_A           65 AKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--------ENTVVLCISS-D-----LPFAQSRFCGA  130 (200)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--------TTEEEEEEES-S-----CHHHHTTCTTT
T ss_pred             CCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--------CCCEEEEEEC-C-----CHHHHHHHHHH
Confidence            4678899999999999999886 6787665  557899999887        2499999985 3     23333444332


Q ss_pred             hcCC-CceeeccCCCCCHHHHHHHHHhhCCC-------C--CcEEEEECCCCceecc
Q 005245          410 QYMM-PWFSVHHPSAIDPAVIRYAKEKWDFR-------K--KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~M-PWyAVpf~~~id~~~~r~ike~~~~~-------~--iP~LVvL~pqGkv~~~  456 (706)
                      + .+ +|..+.-+     . ...+.+.|++.       +  .|..+++|++|+++..
T Consensus       131 ~-~~~~f~~l~D~-----~-~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~  180 (200)
T 3zrd_A          131 E-GLSNVITLSTL-----R-GADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYS  180 (200)
T ss_dssp             T-TCTTEEEEETT-----S-CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             c-CCCCceEEecC-----c-hHHHHHHhCceeecccCCCccccEEEEECCCCeEEEE
Confidence            2 34 55444322     1 12344556664       3  5999999999999854

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.96  E-value=1.8e-05  Score=73.76  Aligned_cols=101  Identities=12%  Similarity=0.124  Sum_probs=70.3

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.+++++++||.|+|+|= +.||++|..  +.|.++|+++        .+++||.|+. |     +.+..++|-+-
T Consensus        34 ~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--------~~v~vv~Is~-d-----~~~~~~~~~~~   99 (171)
T 2yzh_A           34 TKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--------EGVDVTVVSM-D-----LPFAQKRFCES   99 (171)
T ss_dssp             ETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--------TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             CCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--------CCceEEEEeC-C-----CHHHHHHHHHH
Confidence            4578899999999999999985 899887654  6788888766        3599999986 3     23445566543


Q ss_pred             hcCC-Cceeecc-CCCCCHHHHHHHHHhhCCC-------C--CcEEEEECCCCceecc
Q 005245          410 QYMM-PWFSVHH-PSAIDPAVIRYAKEKWDFR-------K--KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~M-PWyAVpf-~~~id~~~~r~ike~~~~~-------~--iP~LVvL~pqGkv~~~  456 (706)
                      + .. +|..+.- ++       +.+ +.|++.       +  .|..+++|++|+++..
T Consensus       100 ~-~~~~~~~l~D~~~-------~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~  148 (171)
T 2yzh_A          100 F-NIQNVTVASDFRY-------RDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYV  148 (171)
T ss_dssp             T-TCCSSEEEECTTT-------CGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             c-CCCCeEEeecCcc-------CcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEE
Confidence            2 23 4433322 11       223 566764       2  6999999999999854

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.96  E-value=1.1e-05  Score=75.12  Aligned_cols=111  Identities=11%  Similarity=0.054  Sum_probs=77.0

Q ss_pred             CCCCcccc----CCCC--ceeecce-ecCcEEEEEEe-cCCCChhH---HHHHHHHHHHHhhcccCCCCCeE-EEEEecc
Q 005245          325 DDQLPLVE----CPTK--RKVSIDV-LRRKSVLLLVS-DLDVSNEE---LFLLEQMYRESRQLSSRTESQYE-VVWLPIV  392 (706)
Q Consensus       325 ~~~~pl~d----g~~~--~kV~Is~-L~gK~VlL~fS-al~~~~~e---~~~L~~iY~elk~~~~~~~~~fE-IVwIpiV  392 (706)
                      ++..|-|.    ..+|  +.|++++ ++||.|+|+|= +.||++|.   ++.|.+.|+++++      .+++ ||-|+. 
T Consensus         7 G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~------~~v~~vv~Is~-   79 (162)
T 1tp9_A            7 GDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS------KGVTEILCISV-   79 (162)
T ss_dssp             TCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH------TTCCCEEEEES-
T ss_pred             CCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEEC-
Confidence            33445544    4577  8999999 99999999998 89988776   5789999999973      3588 999985 


Q ss_pred             cCCCCcChhhHHHHHHhhcCC--CceeeccCCCCCHHHHHHHHHhhCCC------C-----CcEEEEECCCCceecc
Q 005245          393 DRSTPWTEAKEHKFEALQYMM--PWFSVHHPSAIDPAVIRYAKEKWDFR------K-----KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       393 d~s~~w~D~de~~Fe~~~~~M--PWyAVpf~~~id~~~~r~ike~~~~~------~-----iP~LVvL~pqGkv~~~  456 (706)
                      |     +.+..+.|-+-+ ..  ||-.+.     |..  +.+.+.|++.      |     .|..+|+| +|++...
T Consensus        80 d-----~~~~~~~~~~~~-~~~~~~~~l~-----D~~--~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~  142 (162)
T 1tp9_A           80 N-----DPFVMKAWAKSY-PENKHVKFLA-----DGS--ATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             S-----CHHHHHHHHHTC-TTCSSEEEEE-----CTT--SHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             C-----CHHHHHHHHHhc-CCCCCeEEEE-----CCC--chHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEE
Confidence            4     234455665432 23  343222     221  3345566775      3     79999999 9999865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.96  E-value=0.00011  Score=72.41  Aligned_cols=171  Identities=11%  Similarity=0.122  Sum_probs=106.1

Q ss_pred             CCc--eeecce-ecCcEEEEEEe-cCCCChhH---HHHHHHHHHHHhhcccCCCCCe-EEEEEecccCCCCcChhhHHHH
Q 005245          335 TKR--KVSIDV-LRRKSVLLLVS-DLDVSNEE---LFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       335 ~~~--kV~Is~-L~gK~VlL~fS-al~~~~~e---~~~L~~iY~elk~~~~~~~~~f-EIVwIpiVd~s~~w~D~de~~F  406 (706)
                      +|+  .|++++ ++||.|+|+|= +.||++|.   ++.|.+.|+++++      .++ +||-|+. |     +....+.|
T Consensus        19 ~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~------~~~~~vv~is~-d-----~~~~~~~~   86 (241)
T 1nm3_A           19 GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK------YGVDDILVVSV-N-----DTFVMNAW   86 (241)
T ss_dssp             TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH------TTCCEEEEEES-S-----CHHHHHHH
T ss_pred             CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEEc-C-----CHHHHHHH
Confidence            455  899999 99999999986 99998877   6889999999974      358 9999985 4     23445566


Q ss_pred             HHhhcCCC-ceeeccCCCCCHHHHHHHHHhhCCC-----------CCcEEEEECCCCceecccHHHHHHHhCcccc--cC
Q 005245          407 EALQYMMP-WFSVHHPSAIDPAVIRYAKEKWDFR-----------KKPILVVLDPQGRVVNQNALHMMWIWGSVAF--PF  472 (706)
Q Consensus       407 e~~~~~MP-WyAVpf~~~id~~~~r~ike~~~~~-----------~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AF--PF  472 (706)
                      -+-.. .+ |..+.-+   +.+    +.+.|++.           ..|..+++ ++|++.....       |....  ||
T Consensus        87 ~~~~~-~~~~~~l~D~---~~~----~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~-------~~~~~~~~~  150 (241)
T 1nm3_A           87 KEDEK-SENISFIPDG---NGE----FTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFI-------EPNEPGDPF  150 (241)
T ss_dssp             HHHTT-CTTSEEEECT---TSH----HHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEE-------CCSCSSCCC
T ss_pred             HHhcC-CCceEEEECC---CcH----HHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEE-------eccCCCccc
Confidence            54332 22 3222222   122    44556664           35889999 9999986532       32222  45


Q ss_pred             ChhhHHHhhhhcccccccccccCCCCccccccCceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhh
Q 005245          473 SVAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKA  552 (706)
Q Consensus       473 T~~r~eeL~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v  552 (706)
                      +....+++-+.           ++...   + ....|-+|...   || -|..+++++-++.++++|.+-|..+..++.+
T Consensus       151 ~~~~~~~il~~-----------l~~~~---i-~~~~i~ly~~~---~C-p~C~~a~~~L~~~~i~~~~~~i~~~~~~~~l  211 (241)
T 1nm3_A          151 KVSDADTMLKY-----------LAPQH---Q-VQESISIFTKP---GC-PFCAKAKQLLHDKGLSFEEIILGHDATIVSV  211 (241)
T ss_dssp             SSSSHHHHHHH-----------HCTTS---C-CCCCEEEEECS---SC-HHHHHHHHHHHHHTCCCEEEETTTTCCHHHH
T ss_pred             eecCHHHHHHH-----------hhhhc---c-ccceEEEEECC---CC-hHHHHHHHHHHHcCCceEEEECCCchHHHHH
Confidence            44444443321           11111   1 23457788654   55 3444555555556999999999887544443

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.90  E-value=2.7e-05  Score=72.42  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=70.0

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|.+++++||.|+|+|= +.||++|  +++.|.+.|+++        .+++||.|+. |     +.+..++|-+-
T Consensus        30 ~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--------~~v~vv~Is~-d-----~~~~~~~~~~~   95 (165)
T 1q98_A           30 GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--------SNTIVLCISA-D-----LPFAQARFCGA   95 (165)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--------TTEEEEEEES-S-----CHHHHTTCTTT
T ss_pred             CCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--------CCCEEEEEeC-C-----CHHHHHHHHHH
Confidence            4578899999999999999985 8897765  457799999887        2599999986 3     12233334322


Q ss_pred             hcCC-CceeeccCCCCCHHHHHHHHHhhCCCC---------CcEEEEECCCCceeccc
Q 005245          410 QYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRK---------KPILVVLDPQGRVVNQN  457 (706)
Q Consensus       410 ~~~M-PWyAVpf~~~id~~~~r~ike~~~~~~---------iP~LVvL~pqGkv~~~n  457 (706)
                       ..+ +|..+--+.  +    ..+.+.|++..         .|..+++|++|+++...
T Consensus        96 -~~~~~~~~l~D~~--~----~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A           96 -EGIENAKTVSTFR--N----HALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             -TTCTTEEEEECTT--C----THHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             -cCCCceEEeeccc--c----chHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence             234 443332210  1    23445567642         49999999999998653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.82  E-value=4.7e-05  Score=66.97  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=56.8

Q ss_pred             cceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      ....+||.|+++|.+.||++|..  +.|.+++++.+       .++.++.|.+        |.                 
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~~-----------------   68 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-------GKFNIYYARL--------EE-----------------   68 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-------SSCEEEEEET--------TS-----------------
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------CC-----------------
Confidence            34567999999999999999876  56777777653       4688888863        10                 


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            +  .-..+.+.|++++.|++++++++|+++.
T Consensus        69 ------d--~~~~~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           69 ------E--KNIDLAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             ------S--HHHHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             ------C--chHHHHHHcCCcceeEEEEECCCCCEEE
Confidence                  1  1124567789999999999999999864

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=97.80  E-value=2.9e-05  Score=74.34  Aligned_cols=76  Identities=14%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             ecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCcee
Q 005245          340 SIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFS  417 (706)
Q Consensus       340 ~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyA  417 (706)
                      .++.++||.|+|.|+|.||+||..  |.|.+++++.        .+++++.|.+        |+..+..+.+..      
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~--------~~v~~~~v~~--------d~~~~~~~~~~~------  105 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQ--------PNIELAIISK--------GRAEDDLRQRLA------  105 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHC--------TTEEEEEECH--------HHHHHHTTTTTT------
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHC--------CCcEEEEEEC--------CCCHHHHHHHHH------
Confidence            345788999999999999999876  7898888653        2488888854        433322222111      


Q ss_pred             eccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          418 VHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       418 Vpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                        -+++++|++++++++|+++.
T Consensus       106 ------------------~~v~~iPt~i~~~~~G~~~~  125 (167)
T 1z6n_A          106 ------------------LERIAIPLVLVLDEEFNLLG  125 (167)
T ss_dssp             ------------------CSSCCSSEEEEECTTCCEEE
T ss_pred             ------------------cCCCCcCeEEEECCCCCEEE
Confidence                              15799999999999999864

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.79  E-value=7e-05  Score=66.50  Aligned_cols=85  Identities=7%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             CccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHH
Q 005245          328 LPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHK  405 (706)
Q Consensus       328 ~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~  405 (706)
                      .|-+...++..+.....+||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |+..  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~-------~~v~~~~vd~--------d~~~--   86 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG-------KRIYLLKVDL--------DKNE--   86 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG-------GGEEEEEEEG--------GGCH--
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCeEEEEEEC--------CCCH--
Confidence            344445556666666788999999999999999876  56888887774       2477777754        2221  


Q ss_pred             HHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          406 FEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       406 Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                               .+.+.|++++.|+++++ .+|+++.
T Consensus        87 -------------------------~l~~~~~v~~~Pt~~~~-~~G~~~~  110 (128)
T 3ul3_B           87 -------------------------SLARKFSVKSLPTIILL-KNKTMLA  110 (128)
T ss_dssp             -------------------------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------------------------HHHHHcCCCCcCEEEEE-ECCEEEE
Confidence                                     45677899999999999 7898765

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.77  E-value=7.8e-05  Score=70.57  Aligned_cols=103  Identities=12%  Similarity=0.061  Sum_probs=71.9

Q ss_pred             CCCCceeeccee-cCcEEEEEE-ecCCCChh---HHHHHHHHHHHHhhcccCCCCCe-EEEEEecccCCCCcChhhHHHH
Q 005245          333 CPTKRKVSIDVL-RRKSVLLLV-SDLDVSNE---ELFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       333 g~~~~kV~Is~L-~gK~VlL~f-Sal~~~~~---e~~~L~~iY~elk~~~~~~~~~f-EIVwIpiVd~s~~w~D~de~~F  406 (706)
                      ..+|+.|+++++ +||.|.|+| -+.|||+|   +++.|.+.|+++++      .++ +||-|+. |     +.+..+.|
T Consensus        17 ~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~------~gv~~vv~Is~-d-----~~~~~~~~   84 (167)
T 2wfc_A           17 ATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG------KGVDIIACMAV-N-----DSFVMDAW   84 (167)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH------TTCCEEEEEES-S-----CHHHHHHH
T ss_pred             CCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEeC-C-----CHHHHHHH
Confidence            457889999998 999888887 59998876   55789999999974      358 9999985 3     23445566


Q ss_pred             HHhhcCCC--ceeeccCCCCCHHHHHHHHHhhCCCC-----------CcEEEEECCCCceecc
Q 005245          407 EALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFRK-----------KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       407 e~~~~~MP--WyAVpf~~~id~~~~r~ike~~~~~~-----------iP~LVvL~pqGkv~~~  456 (706)
                      -+-. .+|  |..+.-++       ..+.+.|++..           .|..+|+ ++|+++..
T Consensus        85 ~~~~-~~~~~fp~l~D~~-------~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~  138 (167)
T 2wfc_A           85 GKAH-GADDKVQMLADPG-------GAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKV  138 (167)
T ss_dssp             HHHT-TCTTTSEEEECTT-------SHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEE
T ss_pred             HHhc-CCCcceEEEECCC-------CcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEE
Confidence            5432 344  43332221       23445567653           4999999 99999875

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.73  E-value=2.3e-05  Score=79.99  Aligned_cols=100  Identities=12%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             eeec-cee--cCcE-EEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh-
Q 005245          338 KVSI-DVL--RRKS-VLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ-  410 (706)
Q Consensus       338 kV~I-s~L--~gK~-VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~-  410 (706)
                      +|++ +++  +||. |+++|-+.||+.|..  +.|.+.|++++.      .+++||.||+ |+     ......|.+.. 
T Consensus        22 ~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~------~gv~VI~VS~-Ds-----~~~~~~w~~~~~   89 (249)
T 3a2v_A           22 VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR------LGVDLIGLSV-DS-----VFSHIKWKEWIE   89 (249)
T ss_dssp             EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-SC-----HHHHHHHHHHHH
T ss_pred             CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh------CCcEEEEEEC-CC-----HHHHHHHHHHHH
Confidence            6899 998  9996 455789999887654  679999999973      3699999986 42     33444454321 


Q ss_pred             ----cCCCceeeccCCCCCHHHHHHHHHhhCCC-------CCcEEEEECCCCceecc
Q 005245          411 ----YMMPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ----~~MPWyAVpf~~~id~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~  456 (706)
                          ..++|..+--+       .+.+.+.|++.       ..|.++++||+|++...
T Consensus        90 ~~~~~~i~fPil~D~-------~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~  139 (249)
T 3a2v_A           90 RHIGVRIPFPIIADP-------QGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  139 (249)
T ss_dssp             HHTCCCCCSCEEECT-------TSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEE
T ss_pred             HhcCCCCceeEEECC-------chHHHHHhCCccccCCCcccceEEEECCCCeEEEE
Confidence                24554433222       23455667886       89999999999998764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.73  E-value=1.1e-05  Score=74.68  Aligned_cols=93  Identities=11%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~F  406 (706)
                      ...+..+..+..+||.|+|+|. +.||++|..  +.|   .++.+...       .+|.+|-|.+ +      +..    
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-------~~~~~v~vd~-~------~~~----   95 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-------VHLHMVEVDF-P------QKN----   95 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-------HHCEEEEEEC-C------SSC----
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-------CcEEEEEecC-c------ccc----
Confidence            3345566777788999999999 999999876  456   44433332       3466666643 1      111    


Q ss_pred             HHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          407 EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       407 e~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                           .+|     ++.   ......+.+.|++++.|+++++|++|+++..
T Consensus        96 -----~~~-----~~~---~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A           96 -----HQP-----EEQ---RQKNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             -----CCC-----HHH---HHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             -----CCC-----hhh---HhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence                 122     221   2345677889999999999999999999864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.73  E-value=0.00014  Score=72.36  Aligned_cols=103  Identities=9%  Similarity=0.062  Sum_probs=70.7

Q ss_pred             CCCceeecceecCc--EEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRRK--SVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK--~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      .+| .|++++++||  .|+++|-+.||+.|..  +.|.+.|+++++      .+++||.||+ |+     .+....|-+-
T Consensus        19 ~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~------~~v~vi~IS~-D~-----~~~~~~~~~~   85 (224)
T 1prx_A           19 TVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK------RNVKLIALSI-DS-----VEDHLAWSKD   85 (224)
T ss_dssp             TTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-SC-----HHHHHHHHHH
T ss_pred             CCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH------CCCEEEEEcC-CC-----HHHHHHHHHH
Confidence            456 8999999998  5666678999887654  679999999973      4699999986 42     3334445432


Q ss_pred             ----h-----cCCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceecc
Q 005245          410 ----Q-----YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ----~-----~~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~~  456 (706)
                          .     ..++|..+--++       +.+.+.|++.            ..|..+++||+|++...
T Consensus        86 i~~~~~~~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~  146 (224)
T 1prx_A           86 INAYNSEEPTEKLPFPIIDDRN-------RELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  146 (224)
T ss_dssp             HHHHTTSCCCSCCSSCEEECTT-------CHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             HHHhhCcccccCcCcceeecCc-------hHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEE
Confidence                1     355654443221       2344556663            37999999999999764

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.71  E-value=1.6e-05  Score=74.95  Aligned_cols=104  Identities=12%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             CCCCceeeccee--cCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVL--RRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L--~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      ..+|+.|+++++  +||.|.|+|= +.|||+|..  +.|.+.|+++++      .++++|-|+. |     +.+..++|-
T Consensus        18 ~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~------~~v~vv~is~-d-----~~~~~~~~~   85 (164)
T 4gqc_A           18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK------ANAEVLAISV-D-----SPWCLKKFK   85 (164)
T ss_dssp             BTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG------SSSEEEEEES-S-----CHHHHHHHH
T ss_pred             CCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc------cCceEEEecC-C-----CHHHHHHHH
Confidence            467889999998  8998888876 889988754  578899998863      4589999985 4     244556775


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCCC----------CCcEEEEECCCCceecc
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----------~iP~LVvL~pqGkv~~~  456 (706)
                      +- ..+||-.+--++   .    .+.+.|++.          ..|...|+|++|++...
T Consensus        86 ~~-~~~~fp~l~D~~---~----~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~  136 (164)
T 4gqc_A           86 DE-NRLAFNLLSDYN---R----EVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYK  136 (164)
T ss_dssp             HH-TTCCSEEEECTT---S----HHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEE
T ss_pred             Hh-cCcccceeecCc---h----HHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEE
Confidence            43 345544433222   2    344556663          36889999999999754

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.70  E-value=8e-05  Score=74.92  Aligned_cols=103  Identities=11%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             CCCceeecceecCc-EEEEEE-ecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRRK-SVLLLV-SDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~gK-~VlL~f-Sal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      .+| .|++++++|| .|+|+| .+.||+.|..  +.|.+.|+++++      .+++||.||+ |+     ....+.|-+-
T Consensus        17 ~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~------~~v~vigIS~-D~-----~~~~~~~~~~   83 (233)
T 2v2g_A           17 TIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK------RGVKLIALSC-DN-----VADHKEWSED   83 (233)
T ss_dssp             TTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-SC-----HHHHHHHHHH
T ss_pred             CCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH------cCCEEEEEcC-CC-----HHHHHHHHHH
Confidence            456 8999999998 777777 5889877654  679999999973      3599999986 42     3344455442


Q ss_pred             -----hc--CCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceecc
Q 005245          410 -----QY--MMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 -----~~--~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~~  456 (706)
                           ..  .++|.-+--++       +.+.+.|++.            ..|..+|+||+|++...
T Consensus        84 i~~~~~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~  142 (233)
T 2v2g_A           84 VKCLSGVKGDMPYPIIADET-------RELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLS  142 (233)
T ss_dssp             HHHHHTCCSSCSSCEEECTT-------CHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEE
T ss_pred             HHHhhCcccCCceEEEECCh-------HHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEE
Confidence                 12  55554433221       2344556763            47999999999999754

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=97.69  E-value=1.7e-05  Score=73.79  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=59.5

Q ss_pred             ceecCcEEEEEEecCCCChhHHH---HH--HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245          342 DVLRRKSVLLLVSDLDVSNEELF---LL--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF  416 (706)
Q Consensus       342 s~L~gK~VlL~fSal~~~~~e~~---~L--~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy  416 (706)
                      ...+||.|+|.|.|.||++|...   .|  .++.+.++       ++|.+|-|.+ |.     +.+......+.....+.
T Consensus        43 a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~-------~~~~~v~v~~-d~-----~~~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           43 ARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN-------NDYVLITLYV-DN-----KTPLTEPVKIMENGTER  109 (172)
T ss_dssp             HHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH-------HHCEEEEEET-TC-----CCEEEEEEEEEETTEEE
T ss_pred             HHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-------CCEEEEEEec-Cc-----ccccchhhhhhhcchhh
Confidence            34569999999999999999762   11  44444443       1488888865 21     00000001112233333


Q ss_pred             eeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          417 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       417 AVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .++...   ........+.|++.++|+++++|++|+++..
T Consensus       110 ~~~~~~---~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          110 TLRTVG---DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             EEEEHH---HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hhhhhh---hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            333311   1222333588999999999999999999864

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.68  E-value=8.8e-05  Score=73.55  Aligned_cols=102  Identities=11%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             CCceeecceecCc--EEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH--
Q 005245          335 TKRKVSIDVLRRK--SVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA--  408 (706)
Q Consensus       335 ~~~kV~Is~L~gK--~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~--  408 (706)
                      +| .|++++++||  .|+++|-+.||+.|.  ++.|.+.|+++++      .+++||.||+ |+     ....+.|-+  
T Consensus        20 ~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~------~~v~vi~vS~-D~-----~~~~~~~~~~i   86 (220)
T 1xcc_A           20 DG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK------LNCKLIGFSC-NS-----KESHDKWIEDI   86 (220)
T ss_dssp             SS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT------TTEEEEEEES-SC-----HHHHHHHHHHH
T ss_pred             CC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEeC-CC-----HHHHHHHHHHH
Confidence            56 8999999998  444455889987765  4679999999973      4699999986 42     334455543  


Q ss_pred             --h--hcCCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceecc
Q 005245          409 --L--QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 --~--~~~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~~  456 (706)
                        +  ...++|..+--++       +.+.+.|++.            ..|..+|+||+|++...
T Consensus        87 ~~~~~~~~~~fpil~D~~-------~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~  143 (220)
T 1xcc_A           87 KYYGKLNKWEIPIVCDES-------RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT  143 (220)
T ss_dssp             HHHHTCSCCCCCEEECTT-------SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred             HHHhcCCCCcceeEECch-------hHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEE
Confidence              1  2455554433221       2344556762            37999999999999764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.62  E-value=8.4e-05  Score=66.78  Aligned_cols=78  Identities=14%  Similarity=0.066  Sum_probs=57.0

Q ss_pred             eeecceecCcEEEEEEecCCCChhHHH--HH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          338 KVSIDVLRRKSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       338 kV~Is~L~gK~VlL~fSal~~~~~e~~--~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      +..++..+||.|+|+|.+.||++|...  .+   .+++++.+        ++.++.|.+        |..          
T Consensus        23 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--------~~~~~~vd~--------~~~----------   76 (134)
T 2fwh_A           23 NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--------DTVLLQANV--------TAN----------   76 (134)
T ss_dssp             HHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--------TSEEEEEEC--------TTC----------
T ss_pred             HHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--------CcEEEEEeC--------CCC----------
Confidence            456667789999999999999999763  34   45554442        377777754        111          


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                               .    .....+.+.|++.+.|+++++|++|+++
T Consensus        77 ---------~----~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           77 ---------D----AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             ---------C----HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             ---------c----chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                     0    1234567788999999999999999987

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.61  E-value=5.5e-05  Score=67.12  Aligned_cols=74  Identities=16%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHH--HHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLE--QMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~--~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      .+||.|+|+|.+.||++|..  +.|.  ++.++++       +++.++.|.+        +.                  
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~-------~~~~~~~vd~--------~~------------------   73 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA-------KHFEVVKIDV--------GN------------------   73 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH-------HHCEEEEEEC--------TT------------------
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc-------CCEEEEEEeC--------Cc------------------
Confidence            45999999999999999876  5677  7777764       2488888865        11                  


Q ss_pred             cCCCCCHHHHHHHHHhhCC---CCCcEEEEECCCCceecc
Q 005245          420 HPSAIDPAVIRYAKEKWDF---RKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~---~~iP~LVvL~pqGkv~~~  456 (706)
                      . +     ....+.+.|++   ++.|+++++|++|+++..
T Consensus        74 ~-~-----~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~  107 (133)
T 3fk8_A           74 F-D-----RNLELSQAYGDPIQDGIPAVVVVNSDGKVRYT  107 (133)
T ss_dssp             T-T-----SSHHHHHHTTCGGGGCSSEEEEECTTSCEEEE
T ss_pred             c-c-----chHHHHHHhCCccCCccceEEEECCCCCEEEE
Confidence            1 1     12236677899   999999999999998854

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.45  E-value=0.00032  Score=62.92  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=51.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.+++++.+       +++.++-|.+        |++                    
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   81 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD-------GQIVIYKVDT--------EKE--------------------   81 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc-------CCEEEEEEeC--------CCC--------------------
Confidence            4789999999999999876  56777777663       2466666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.|++++.|+++++|++|+++
T Consensus        82 -------~~l~~~~~v~~~Pt~~~~~~~G~~~  106 (136)
T 2l5l_A           82 -------QELAGAFGIRSIPSILFIPMEGKPE  106 (136)
T ss_dssp             -------HHHHHHTTCCSSCEEEEECSSSCCE
T ss_pred             -------HHHHHHcCCCCCCEEEEECCCCcEE
Confidence                   1355678999999999999999986

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.32  E-value=0.00021  Score=69.18  Aligned_cols=129  Identities=10%  Similarity=0.026  Sum_probs=79.6

Q ss_pred             CCCCCccccCC----CC-ceeecce-ecCcEEE-EEEecCCCChhH---HHHHHHHHHHHhhcccCCCCCeE-EEEEecc
Q 005245          324 KDDQLPLVECP----TK-RKVSIDV-LRRKSVL-LLVSDLDVSNEE---LFLLEQMYRESRQLSSRTESQYE-VVWLPIV  392 (706)
Q Consensus       324 k~~~~pl~dg~----~~-~kV~Is~-L~gK~Vl-L~fSal~~~~~e---~~~L~~iY~elk~~~~~~~~~fE-IVwIpiV  392 (706)
                      -++..|-|.-.    +| +.|++++ ++||.|. ++|=+.|||+|.   ++.|.+.|+++++      .+++ ||-|+. 
T Consensus        28 vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~------~gv~~vv~Is~-  100 (184)
T 3uma_A           28 VGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILA------RGVDDIAVVAV-  100 (184)
T ss_dssp             TTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT------TTCCEEEEEES-
T ss_pred             CCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHH------cCCCEEEEEEC-
Confidence            34445555432    56 8999999 8999654 456699998874   5789999999973      3488 999986 


Q ss_pred             cCCCCcChhhHHHHHHhhcCCC--ceeeccCCCCCHHHHHHHHHhhCCC-----------CCcEEEEECCCCceecccHH
Q 005245          393 DRSTPWTEAKEHKFEALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFR-----------KKPILVVLDPQGRVVNQNAL  459 (706)
Q Consensus       393 d~s~~w~D~de~~Fe~~~~~MP--WyAVpf~~~id~~~~r~ike~~~~~-----------~iP~LVvL~pqGkv~~~nA~  459 (706)
                      |     +....++|-+-. ..|  |--+.-++       ..+.+.|++.           ..|..+|++ +|+|..... 
T Consensus       101 d-----~~~~~~~f~~~~-~~~~~fp~l~D~~-------~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~-  165 (184)
T 3uma_A          101 N-----DLHVMGAWATHS-GGMGKIHFLSDWN-------AAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNI-  165 (184)
T ss_dssp             S-----CHHHHHHHHHHH-TCTTTSEEEECTT-------CHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEE-
T ss_pred             C-----CHHHHHHHHHHh-CCCCceEEEEcCc-------hHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEE-
Confidence            3     234456665432 233  33332221       2344556764           357788886 999976442 


Q ss_pred             HHHHHhCcccccCChhhHHHh
Q 005245          460 HMMWIWGSVAFPFSVAREEAL  480 (706)
Q Consensus       460 ~mI~~wG~~AFPFT~~r~eeL  480 (706)
                            |.+.=+++.+..+++
T Consensus       166 ------~~~~g~~~~~~~~~v  180 (184)
T 3uma_A          166 ------EESPGQATASGAAAM  180 (184)
T ss_dssp             ------CSSTTCCSTTSHHHH
T ss_pred             ------eCCCCCCcCCCHHHH
Confidence                  333335555555444

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.29  E-value=0.00039  Score=60.05  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++                  + 
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-------~~v~~~~vd~--------~~~------------------~-   61 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG-------DKLKIVKIDV--------DEN------------------Q-   61 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT-------TTCEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCcEEEEEEC--------CCC------------------H-
Confidence            7899999999999998875  57888887774       2578888754        211                  1 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ ++|+++.
T Consensus        62 --------~l~~~~~v~~~Pt~~~~-~~G~~~~   85 (112)
T 2voc_A           62 --------ETAGKYGVMSIPTLLVL-KDGEVVE   85 (112)
T ss_dssp             --------SHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCCcccEEEEE-eCCEEEE
Confidence                    14567899999999999 9999874

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=97.28  E-value=0.00043  Score=66.31  Aligned_cols=104  Identities=14%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             CCCCceeecce-ecCcEEEEEE-ecCCCChhH---HHHHHHHHHHHhhcccCCCCCeEEEE-EecccCCCCcChhhHHHH
Q 005245          333 CPTKRKVSIDV-LRRKSVLLLV-SDLDVSNEE---LFLLEQMYRESRQLSSRTESQYEVVW-LPIVDRSTPWTEAKEHKF  406 (706)
Q Consensus       333 g~~~~kV~Is~-L~gK~VlL~f-Sal~~~~~e---~~~L~~iY~elk~~~~~~~~~fEIVw-IpiVd~s~~w~D~de~~F  406 (706)
                      ..+|+.|.+++ ++||.|.|+| =+.|||+|.   ++.|.+.|+++++      .+++||. |+. |     +....++|
T Consensus        29 ~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~------~gv~vv~~iS~-D-----~~~~~~~f   96 (173)
T 3mng_A           29 GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA------KGVQVVACLSV-N-----DAFVTGEW   96 (173)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT------TTCCEEEEEES-S-----CHHHHHHH
T ss_pred             CCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh------CCCEEEEEEcC-C-----CHHHHHHH
Confidence            45788999999 5999766655 599998887   4789999999973      3599998 875 3     23445566


Q ss_pred             HHhhcCCC--ceeeccCCCCCHHHHHHHHHhhCCC-------------CCcEEEEECCCCceeccc
Q 005245          407 EALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFR-------------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       407 e~~~~~MP--WyAVpf~~~id~~~~r~ike~~~~~-------------~iP~LVvL~pqGkv~~~n  457 (706)
                      -+-.. .|  +..+--++   .    .+.+.|++.             ..|...|+| +|++....
T Consensus        97 ~~~~~-~~~~fp~l~D~~---~----~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A           97 GRAHK-AEGKVRLLADPT---G----AFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             HHHTT-CTTTCEEEECTT---C----HHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             HHHhC-CCCceEEEECCC---h----HHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence            54322 22  32222221   2    333445553             459999999 99997653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.26  E-value=0.00067  Score=57.03  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |++                    
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~~~--------------------   60 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-------DKVTVAKLNV--------DEN--------------------   60 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHST-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------cCC--------------------
Confidence            4789999999999999876  45666666553       3477777754        221                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++ ++|+++.
T Consensus        61 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   85 (105)
T 1nsw_A           61 -------PETTSQFGIMSIPTLILF-KGGRPVK   85 (105)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCccccEEEEE-eCCeEEE
Confidence                   125567899999999999 8998764

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.26  E-value=0.00076  Score=67.98  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             CCcccc------CCCCceeecceecCcEEEEEEe-cCC--CChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCC
Q 005245          327 QLPLVE------CPTKRKVSIDVLRRKSVLLLVS-DLD--VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP  397 (706)
Q Consensus       327 ~~pl~d------g~~~~kV~Is~L~gK~VlL~fS-al~--~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~  397 (706)
                      .-|-|.      ..++.+|++++++||.|.|||= +.+  .|+.|+..+.+.|+++++      .+.+||-||. |    
T Consensus        31 ~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~------~g~~vigiS~-D----   99 (219)
T 3tue_A           31 PAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE------LNCEVLACSI-D----   99 (219)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT------TTEEEEEEES-S----
T ss_pred             cCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc------CCcEEEEeeC-C----
Confidence            456664      3467899999999999999998 444  445666789999999973      4699999986 4    


Q ss_pred             cChhhHHHHHH-hhcCCCceeeccCCCCCHHHHHHHHHhhCC----CCC--cEEEEECCCCceec
Q 005245          398 WTEAKEHKFEA-LQYMMPWFSVHHPSAIDPAVIRYAKEKWDF----RKK--PILVVLDPQGRVVN  455 (706)
Q Consensus       398 w~D~de~~Fe~-~~~~MPWyAVpf~~~id~~~~r~ike~~~~----~~i--P~LVvL~pqGkv~~  455 (706)
                       +-...+.|.+ ...+..-+.+|||-+-|.  -+.+.+.|++    .+.  -...|+||+|++..
T Consensus       100 -s~~sh~~w~~~~~~~~~~~~l~fpllsD~--~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~  161 (219)
T 3tue_A          100 -SEYAHLQWTLQDRKKGGLGTMAIPILADK--TKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQ  161 (219)
T ss_dssp             -CHHHHHHHHHSCGGGTCCCSCSSCEEECT--TSHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             -chhhHHHHhhhhHHhcCccccccccccCc--ccHHHHHcCCcccCCCeeEEEEEEECCCCeEEE
Confidence             2556677753 445555666777533232  2345555665    233  37899999998853

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.23  E-value=0.00088  Score=56.11  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=51.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++.                   
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~~-------------------   63 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE-------GKADILKLDV--------DENP-------------------   63 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTCH-------------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCcEEEEEEC--------CcCH-------------------
Confidence            8999999999999999876  56777777764       2477777754        2211                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|++++++ +|+.+.
T Consensus        64 --------~~~~~~~v~~~Pt~~~~~-~G~~~~   87 (106)
T 3die_A           64 --------STAAKYEVMSIPTLIVFK-DGQPVD   87 (106)
T ss_dssp             --------HHHHHTTCCSBSEEEEEE-TTEEEE
T ss_pred             --------HHHHhCCCcccCEEEEEe-CCeEEE
Confidence                    245678999999999995 898764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.22  E-value=0.0011  Score=56.39  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |.+.                   
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~v~~--------~~~~-------------------   69 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYS-------DRLKVVKLEI--------DPNP-------------------   69 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT-------TTCEEEEEES--------TTCH-------------------
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhC-------CcEEEEEEEc--------CCCH-------------------
Confidence            5899999999999999876  45666665553       3488888854        2211                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ ++|+++.
T Consensus        70 --------~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (115)
T 1thx_A           70 --------TTVKKYKVEGVPALRLV-KGEQILD   93 (115)
T ss_dssp             --------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCCceeEEEEE-cCCEEEE
Confidence                    25567899999999999 8999874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.20  E-value=0.00076  Score=57.00  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=50.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |++                  + 
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~------------------~-   64 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   64 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC------------------T-
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC-------CCcEEEEEEC--------CCC------------------H-
Confidence            4799999999999999876  46777666653       2467766643        211                  0 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ ++|+++.
T Consensus        65 --------~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (108)
T 2trx_A           65 --------GTAPKYGIRGIPTLLLF-KNGEVAA   88 (108)
T ss_dssp             --------THHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCcccCEEEEE-eCCEEEE
Confidence                    14567899999999999 8999864

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.00041  Score=60.91  Aligned_cols=78  Identities=10%  Similarity=0.075  Sum_probs=52.1

Q ss_pred             eeecceecCcEEEEEEecCCCChhHH--HHH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          338 KVSIDVLRRKSVLLLVSDLDVSNEEL--FLL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       338 kV~Is~L~gK~VlL~fSal~~~~~e~--~~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      .+..+..+||.|+++|.+.||++|..  +.|   ..+-+.++       .++.++-|-+        |.           
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~-----------   72 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-------RHFVNLKMDM--------EK-----------   72 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH-------HHSEEEEECS--------SS-----------
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh-------cCeEEEEEec--------CC-----------
Confidence            44455568999999999999999876  334   33333332       2344444421        11           


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                               +     ....+.+.|++++.|+++++|++|+++.
T Consensus        73 ---------~-----~~~~~~~~~~v~~~Pt~~~~d~~G~~~~  101 (130)
T 2kuc_A           73 ---------G-----EGVELRKKYGVHAYPTLLFINSSGEVVY  101 (130)
T ss_dssp             ---------T-----THHHHHHHTTCCSSCEEEEECTTSCEEE
T ss_pred             ---------c-----chHHHHHHcCCCCCCEEEEECCCCcEEE
Confidence                     1     1234567789999999999999999875

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.17  E-value=0.00033  Score=63.20  Aligned_cols=73  Identities=10%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             cceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      ++..+||.|+++|.+.||++|..  +...++++.+       .|.|+++.+ |       .++                 
T Consensus        35 l~~~~~k~vvv~F~a~wC~~C~~--~~p~l~~l~~-------~~~v~~~~v-d-------~~~-----------------   80 (133)
T 3cxg_A           35 FSSTQNSSIVIKFGAVWCKPCNK--IKEYFKNQLN-------YYYVTLVDI-D-------VDI-----------------   80 (133)
T ss_dssp             HTC-CCSEEEEEEECTTCHHHHH--THHHHHGGGG-------TEECEEEEE-E-------TTT-----------------
T ss_pred             HHhcCCCEEEEEEECCCCHHHHH--HHHHHHHHHH-------hcCEEEEEE-e-------ccc-----------------
Confidence            45567899999999999999986  4556666652       356777765 2       111                 


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEE-CCCCc--eec
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVL-DPQGR--VVN  455 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL-~pqGk--v~~  455 (706)
                              ...+.+.|++++.|+++++ +++|+  ++.
T Consensus        81 --------~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~  110 (133)
T 3cxg_A           81 --------HPKLNDQHNIKALPTFEFYFNLNNEWVLVH  110 (133)
T ss_dssp             --------CHHHHHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred             --------hHHHHHhcCCCCCCEEEEEEecCCCeEEEE
Confidence                    1235677899999999999 55665  553

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0009  Score=57.22  Aligned_cols=69  Identities=12%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++++      ..++.++.|.+        |++                    
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~------~~~~~~~~vd~--------~~~--------------------   65 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPS------NSNVSFLSIDA--------DEN--------------------   65 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGG------GTTSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcC------CCCEEEEEEec--------ccC--------------------
Confidence            3789999999999999876  45666666653      13477777643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ .+|+++.
T Consensus        66 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   90 (112)
T 3d6i_A           66 -------SEISELFEISAVPYFIII-HKGTILK   90 (112)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-ECCEEEE
Confidence                   135677899999999998 6998875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.15  E-value=0.0012  Score=55.14  Aligned_cols=68  Identities=15%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.++++|.+.||++|..  +.|.++.+++.       +++.++.|.+        |.+                    
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   61 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE-------GKLLVAKLDV--------DEN--------------------   61 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB-------TTBEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh-------CceEEEEEEC--------CCC--------------------
Confidence            4799999999999999876  45777666653       2477776643        221                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++.+.|+++++ ++|+++.
T Consensus        62 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (109)
T 2yzu_A           62 -------PKTAMRYRVMSIPTVILF-KDGQPVE   86 (109)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HhHHHhCCCCcCCEEEEE-eCCcEee
Confidence                   125667899999999999 8999874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.13  E-value=0.0012  Score=55.37  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |++                    
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   63 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA-------GKVTVAKVNI--------DDN--------------------   63 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TSEEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhC-------CcEEEEEEEC--------CCC--------------------
Confidence            4799999999999999876  45777776663       2577777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        64 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 2i4a_A           64 -------PETPNAYQVRSIPTLMLV-RDGKVID   88 (107)
T ss_dssp             -------CHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhcCCCccCEEEEE-eCCEEEE
Confidence                   025567899999999999 9999864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.13  E-value=0.0011  Score=56.46  Aligned_cols=68  Identities=24%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++                    
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   66 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG-------DKIEIVKLNI--------DEN--------------------   66 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc-------CCeEEEEEEc--------CCC--------------------
Confidence            3789999999999999876  56777776653       3477777754        221                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++ ++|+++.
T Consensus        67 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   91 (112)
T 1t00_A           67 -------PGTAAKYGVMSIPTLNVY-QGGEVAK   91 (112)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence                   125567899999999888 7998863

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.12  E-value=0.0015  Score=55.07  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++                    
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   62 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK-------DKLKCVKLNT--------DES--------------------   62 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCC--------------------
Confidence            3789999999999999876  56777776653       2477777743        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++ ++|+++.
T Consensus        63 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   87 (107)
T 1dby_A           63 -------PNVASEYGIRSIPTIMVF-KGGKKCE   87 (107)
T ss_dssp             -------HHHHHHHTCCSSCEEEEE-SSSSEEE
T ss_pred             -------HHHHHHCCCCcCCEEEEE-eCCEEEE
Confidence                   135567899999999888 7998864

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.10  E-value=0.0012  Score=55.25  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.++.++.+       .++.++.|.+        |+.                   
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~v~~--------~~~-------------------   63 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA-------DNVVVLKVDV--------DEC-------------------   63 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC-------------------
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC-------CCeEEEEEec--------cch-------------------
Confidence            46899999999999999876  45666665542       3577777753        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              ..+.+.|++++.|+++++ ++|+++.
T Consensus        64 --------~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (106)
T 1xwb_A           64 --------EDIAMEYNISSMPTFVFL-KNGVKVE   88 (106)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHHcCCCcccEEEEE-cCCcEEE
Confidence                    125567899999998777 6898764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.08  E-value=0.0013  Score=57.42  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+|+|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++                    
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~-------~~v~~~~vd~--------d~~--------------------   74 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH-------GKVVMAKVDI--------DDH--------------------   74 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TSSEEEEEET--------TTT--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------CCC--------------------
Confidence            4789999999999999876  45777766653       3577777743        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        75 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~   99 (119)
T 1w4v_A           75 -------TDLAIEYEVSAVPTVLAM-KNGDVVD   99 (119)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCcEEE
Confidence                   135677899999999999 8999864

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.06  E-value=0.0011  Score=57.72  Aligned_cols=72  Identities=7%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.+++++.+         .+|+++-+ +     ...+                    
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~---------~~v~~~~~-~-----~~~~--------------------   72 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK---------AHIYFINS-E-----EPSQ--------------------   72 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---------CCCEEEET-T-----CGGG--------------------
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC---------CeEEEEEC-C-----CcCc--------------------
Confidence            4789999999999999876  56887777653         35777754 1     0111                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                         ....+.+.+.|++++.|+++++. +|+++.
T Consensus        73 ---~~~~~~~~~~~~i~~~Pt~~~~~-~G~~~~  101 (118)
T 1zma_A           73 ---LNDLQAFRSRYGIPTVPGFVHIT-DGQINV  101 (118)
T ss_dssp             ---HHHHHHHHHHHTCCSSCEEEEEE-TTEEEE
T ss_pred             ---HHHHHHHHHHcCCCCCCeEEEEE-CCEEEE
Confidence               12344567788999999999995 888763

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.0013  Score=57.61  Aligned_cols=71  Identities=7%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.+++++++..   ...++.++.|.+        |++                    
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~vd~--------~~~--------------------   72 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQ---TKGKVKLAAVDA--------TVN--------------------   72 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHH---TTTSEEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhh---cCCcEEEEEEEC--------CCC--------------------
Confidence            3789999999999999875  5788888887531   224566666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             +.+.+.|++++.|+++++++ |+.+
T Consensus        73 -------~~l~~~~~v~~~Pt~~~~~~-g~~~   96 (133)
T 1x5d_A           73 -------QVLASRYGIRGFPTIKIFQK-GESP   96 (133)
T ss_dssp             -------CHHHHHHTCCSSSEEEEEET-TEEE
T ss_pred             -------HHHHHhCCCCeeCeEEEEeC-CCce
Confidence                   23556789999999999998 7754

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.04  E-value=0.0014  Score=56.56  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.+        ++.++-|.+        |+.                    
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~--------~~~~~~vd~--------~~~--------------------   66 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--------QADFYKLDV--------DEL--------------------   66 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CCC--------------------
Confidence            4899999999999999876  45666666542        356666533        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|++++++ +|+.+.
T Consensus        67 -------~~l~~~~~v~~~Pt~~~~~-~G~~~~   91 (109)
T 3f3q_A           67 -------GDVAQKNEVSAMPTLLLFK-NGKEVA   91 (109)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -------HHHHHHcCCCccCEEEEEE-CCEEEE
Confidence                   2356778999999999998 898764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.02  E-value=0.0011  Score=58.10  Aligned_cols=68  Identities=6%  Similarity=-0.028  Sum_probs=50.2

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      ++++ |+++|.+.||++|..  +.|.+++++.+.      .++.++-|.+        |++                   
T Consensus        21 ~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~------~~v~~~~vd~--------~~~-------------------   66 (126)
T 1x5e_A           21 LEGD-WMIEFYAPWCPACQNLQPEWESFAEWGED------LEVNIAKVDV--------TEQ-------------------   66 (126)
T ss_dssp             TSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGG------GTCEEEEEET--------TTC-------------------
T ss_pred             hCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEEC--------cCC-------------------
Confidence            4454 999999999999876  578888887752      2477777643        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              +.+.+.|++++.|+++++ ++|++.
T Consensus        67 --------~~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           67 --------PGLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             --------HHHHHHcCCcccCEEEEE-eCCeEE
Confidence                    126677899999999999 899863

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.01  E-value=0.002  Score=54.04  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |+..                   
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~~-------------------   65 (109)
T 3tco_A           20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK-------GKAVFGRLNV--------DENQ-------------------   65 (109)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TTCH-------------------
T ss_pred             cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC-------CCceEEEEcc--------ccCH-------------------
Confidence            5899999999999999876  45777666653       2466666643        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ ++|+.+.
T Consensus        66 --------~~~~~~~i~~~Pt~~~~-~~g~~~~   89 (109)
T 3tco_A           66 --------KIADKYSVLNIPTTLIF-VNGQLVD   89 (109)
T ss_dssp             --------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHhcCcccCCEEEEE-cCCcEEE
Confidence                    24567799999999999 9998775

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.01  E-value=0.0017  Score=54.98  Aligned_cols=67  Identities=12%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.++.++..       +++.++.|.+        |+..                   
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd~--------~~~~-------------------   66 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE-------ESFGFYYVDV--------EEEK-------------------   66 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TTCH-------------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--------CcCh-------------------
Confidence            4789999999999999876  45666665543       3577777754        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              .+.+.|++++.|+++++ .+|+.+
T Consensus        67 --------~l~~~~~v~~~Pt~~~~-~~g~~~   89 (111)
T 3gnj_A           67 --------TLFQRFSLKGVPQILYF-KDGEYK   89 (111)
T ss_dssp             --------HHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             --------hHHHhcCCCcCCEEEEE-ECCEEE
Confidence                    35677899999999999 688876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.00  E-value=0.0012  Score=66.24  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  |.|.+++++.+       +++.++.|.+        |+..                   
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~--------~~~~-------------------   70 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYN-------GQFILAKLDC--------DAEQ-------------------   70 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT-------SSSEEEEEET--------TTCH-------------------
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEEeC--------ccCH-------------------
Confidence            4899999999999999865  77888888774       2477777754        2211                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|+++++|+++++ .+|+++.
T Consensus        71 --------~~~~~~~v~~~Pt~~~~-~~G~~~~   94 (287)
T 3qou_A           71 --------MIAAQFGLRAIPTVYLF-QNGQPVD   94 (287)
T ss_dssp             --------HHHHTTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCCCCCeEEEE-ECCEEEE
Confidence                    46678899999999999 6898774

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.001  Score=66.97  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.++..|++++++||.|.|||= +.|+|.|-+  ..+.+.|+++++      .+.+||-||. |     +......|.+-
T Consensus        39 d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~------~g~~vigiS~-D-----s~~sh~aw~~~  106 (216)
T 3sbc_A           39 DGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE------QGAQVLFAST-D-----SEYSLLAWTNI  106 (216)
T ss_dssp             TTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTS
T ss_pred             CCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc------CCceEEEeec-C-----chhhHHHHHHH
Confidence            4466799999999999999997 566666555  579999999974      4699999986 4     24556677542


Q ss_pred             -hcCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          410 -QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 -~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                       .....-..++||-+.|.  -+.+.+.|++-      ..+...|+||+|++..
T Consensus       107 ~~~~~~~~~l~fpllsD~--~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~  157 (216)
T 3sbc_A          107 PRKEGGLGPINIPLLADT--NHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRH  157 (216)
T ss_dssp             CGGGTCCCSCSSCEEECT--TSHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             HHHhCCccCcccceEeCC--CCHHHHHcCCeeccCCceeeEEEEECCCCeEEE
Confidence             22222234555422222  23344555652      2478999999999853

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.98  E-value=0.002  Score=53.21  Aligned_cols=67  Identities=7%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.++.++.+       + +.++.|.+        |++                    
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-------~-~~~~~v~~--------~~~--------------------   58 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP-------Q-VGFGKLNS--------DEN--------------------   58 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-------T-SEEEEEET--------TTC--------------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC-------C-ceEEEEEC--------CCC--------------------
Confidence            5899999999999999876  45666555442       2 77777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        59 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   83 (104)
T 2e0q_A           59 -------PDIAARYGVMSLPTVIFF-KDGEPVD   83 (104)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCccccCEEEEE-ECCeEhh
Confidence                   125567899999999999 8999864

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.95  E-value=0.00096  Score=59.72  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |++                  + 
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------~~~------------------~-   84 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   84 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCeEEEEEEC--------CCC------------------H-
Confidence            4899999999999999876  56777776653       3477777754        211                  0 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ ++|+++.
T Consensus        85 --------~l~~~~~v~~~Pt~~~~-~~G~~~~  108 (128)
T 2o8v_B           85 --------GTAPKYGIRGIPTLLLF-KNGEVAA  108 (128)
T ss_dssp             --------TTSGGGTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCCccCEEEEE-eCCEEEE
Confidence                    14467899999999999 8999864

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.94  E-value=0.0019  Score=56.44  Aligned_cols=67  Identities=7%  Similarity=0.111  Sum_probs=49.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+        |++                    
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~--------~v~~~~vd~--------~~~--------------------   72 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP--------DVRFVKCDV--------DES--------------------   72 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEEC--------CCC--------------------
Confidence            5899999999999999876  56776666542        266666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        73 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~   97 (114)
T 2oe3_A           73 -------PDIAKECEVTAMPTFVLG-KDGQLIG   97 (114)
T ss_dssp             -------HHHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHCCCCcccEEEEE-eCCeEEE
Confidence                   125677899999999887 8998864

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.92  E-value=0.0013  Score=57.57  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++.        .++.++-|.+        |+.                   
T Consensus        29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--------~~v~~~~vd~--------d~~-------------------   73 (116)
T 3qfa_C           29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKY--------SNVIFLEVDV--------DDC-------------------   73 (116)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTC--------TTSEEEEEET--------TTT-------------------
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--------CCCEEEEEEC--------CCC-------------------
Confidence            36899999999999999875  3455444333        2366666643        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              ..+.+.|++++.|+++++ .+|+.+.
T Consensus        74 --------~~l~~~~~v~~~Pt~~~~-~~G~~~~   98 (116)
T 3qfa_C           74 --------QDVASECEVKSMPTFQFF-KKGQKVG   98 (116)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-SSSSEEE
T ss_pred             --------HHHHHHcCCccccEEEEE-eCCeEEE
Confidence                    235677899999999999 7898764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.91  E-value=0.0021  Score=54.62  Aligned_cols=67  Identities=4%  Similarity=-0.032  Sum_probs=48.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.++.++.        .++.++.|.+        |+.                    
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~--------~~~~~~~vd~--------~~~--------------------   63 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY--------PQAVFLEVDV--------HQC--------------------   63 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTS--------------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHC--------CCcEEEEEEC--------ccC--------------------
Confidence            5899999999999999876  3455554443        2466676644        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++ .+|+.+.
T Consensus        64 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   88 (107)
T 1gh2_A           64 -------QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhcCCCcccEEEEE-ECCeEEE
Confidence                   225577899999999999 7888764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.91  E-value=0.0039  Score=53.77  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=49.4

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      ++|.++++|.+.||++|..  +...++++.+.    -.++.++.|.+        |+.                      
T Consensus        18 ~~~~~vv~f~a~wC~~C~~--~~~~l~~~~~~----~~~v~~~~vd~--------~~~----------------------   61 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKN--MEKVLDKFGAR----APQVAISSVDS--------EAR----------------------   61 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHH--HHHHHHHHHTT----CTTSCEEEEEG--------GGC----------------------
T ss_pred             cCCCEEEEEECCCCHhHHH--HHHHHHHHHHH----CCCcEEEEEcC--------cCC----------------------
Confidence            4789999999999999986  34455555431    23567777643        221                      


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           ..+.+.|++++.|+++++ .+|+++.
T Consensus        62 -----~~l~~~~~v~~~Pt~~~~-~~G~~v~   86 (110)
T 2l6c_A           62 -----PELMKELGFERVPTLVFI-RDGKVAK   86 (110)
T ss_dssp             -----HHHHHHTTCCSSCEEEEE-ESSSEEE
T ss_pred             -----HHHHHHcCCcccCEEEEE-ECCEEEE
Confidence                 125667899999999999 8999874

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.96  E-value=0.00014  Score=64.04  Aligned_cols=78  Identities=12%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             CceeecceecCcEEEEEEecCCCChhHH--HHH---HHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          336 KRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       336 ~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L---~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      ...+.....+||.|+++|.+.||++|..  +.|   .++.+.++       .++.++-|.+        |.++       
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~~-------   66 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-------ARFVVASVSV--------DTPE-------   66 (130)
Confidence            3355666778999999999999999876  334   44444332       3466655533        1110       


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-Cce
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRV  453 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv  453 (706)
                                        ...+.+.|++++.|+++++||+ |++
T Consensus        67 ------------------~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           67 ------------------GQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence                              1235567799999999999985 776

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.89  E-value=0.0012  Score=56.09  Aligned_cols=67  Identities=9%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.++.++.        .++.++-|.+        |+..                   
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~--------~~~~~~~vd~--------~~~~-------------------   61 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENY--------NYVEKIEILL--------QDMQ-------------------   61 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTC--------TTEEEEEEEE--------CCC--------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCceEEEEEC--------CCCH-------------------
Confidence            5899999999999999876  3454444432        2466666644        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++. +|+++.
T Consensus        62 --------~l~~~~~v~~~Pt~~~~~-~G~~~~   85 (105)
T 4euy_A           62 --------EIAGRYAVFTGPTVLLFY-NGKEIL   85 (105)
T ss_dssp             ----------------CCCCEEEEEE-TTEEEE
T ss_pred             --------HHHHhcCCCCCCEEEEEe-CCeEEE
Confidence                    244667999999999995 898874

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.89  E-value=0.0015  Score=55.16  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      ++|.|+++|.+.||++|..  +...++++.+.......++.++-|.+        |+..                     
T Consensus        20 ~~~~~lv~f~~~~C~~C~~--~~~~~~~~~~~~~~~~~~~~~~~vd~--------~~~~---------------------   68 (111)
T 3uvt_A           20 AEGITFIKFYAPWCGHCKT--LAPTWEELSKKEFPGLAGVKIAEVDC--------TAER---------------------   68 (111)
T ss_dssp             HSSEEEEEEECSSCHHHHH--HHHHHHHHHTCCCCC-CCEEEEEEET--------TTCH---------------------
T ss_pred             cCCcEEEEEECCCChhHHH--hhHHHHHHHHHhhccCCceEEEEEec--------cccH---------------------
Confidence            4899999999999999876  33444444321101123566655533        2111                     


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            .+.+.|++++.|+++++ ++|+.+.
T Consensus        69 ------~l~~~~~v~~~Pt~~~~-~~g~~~~   92 (111)
T 3uvt_A           69 ------NICSKYSVRGYPTLLLF-RGGKKVS   92 (111)
T ss_dssp             ------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ------hHHHhcCCCcccEEEEE-eCCcEEE
Confidence                  25677899999999998 7887653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.89  E-value=0.002  Score=54.70  Aligned_cols=67  Identities=12%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ||.|+++|.+.||++|..  +.|.++.++..       +++.++.|.+        |+                      
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~----------------------   66 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA-------GKVIFLKVDV--------DA----------------------   66 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TT----------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-------CCeEEEEEEC--------Cc----------------------
Confidence            899999999999999876  45766666553       2577777743        21                      


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           ...+.+.|++++.|+++++ ++|+++.
T Consensus        67 -----~~~~~~~~~v~~~Pt~~~~-~~G~~~~   92 (112)
T 1ep7_A           67 -----VAAVAEAAGITAMPTFHVY-KDGVKAD   92 (112)
T ss_dssp             -----THHHHHHHTCCBSSEEEEE-ETTEEEE
T ss_pred             -----hHHHHHHcCCCcccEEEEE-ECCeEEE
Confidence                 1235567799999998877 7999864

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.89  E-value=0.0025  Score=56.53  Aligned_cols=67  Identities=7%  Similarity=0.217  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++..        ++.++.|.+        |++                    
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--------~v~~~~vd~--------d~~--------------------   80 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--------NVLFLKVDT--------DEL--------------------   80 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--------SEEEEEEET--------TTS--------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CcEEEEEEC--------ccC--------------------
Confidence            5899999999999999876  45665555431        466666543        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        81 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1xfl_A           81 -------KSVASDWAIQAMPTFMFL-KEGKILD  105 (124)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCccCEEEEE-ECCEEEE
Confidence                   235567899999999887 8999874

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.87  E-value=0.0028  Score=52.88  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.++++|.+.||++|..  +.|.+++++.+       +++.++.|.+        |++                    
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   61 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-------GKIAVYKLNT--------DEA--------------------   61 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhc-------CceEEEEEcC--------cch--------------------
Confidence            3789999999999999876  45777766653       2466666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        62 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   86 (105)
T 1fb6_A           62 -------PGIATQYNIRSIPTVLFF-KNGERKE   86 (105)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCeEEE
Confidence                   135567899999998888 6998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.85  E-value=0.0012  Score=58.22  Aligned_cols=69  Identities=7%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++++.     ..++.++.|-+        |+.                  + 
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-----~~~~~~~~vd~--------~~~------------------~-   71 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG-----QKDLVIAKMDA--------TAN------------------D-   71 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTT-----SSSEEEEEECT--------TTS------------------C-
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-----CCCEEEEEecC--------CcC------------------H-
Confidence            4899999999999999877  578888888752     23555555422        111                  1 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                              .+.+.|++++.|+++++++.|++
T Consensus        72 --------~~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           72 --------ITNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             --------CCCSSCCCSSSSEEEEECTTCTT
T ss_pred             --------HHHhhcCCCcCCEEEEEeCCCcc
Confidence                    12346799999999999987754

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.85  E-value=0.0017  Score=55.58  Aligned_cols=69  Identities=14%  Similarity=0.064  Sum_probs=47.9

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+       +++                    
T Consensus        22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--------~v~~~~vd~-------~~~--------------------   66 (111)
T 2pu9_C           22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--------DVIFLKLDC-------NQE--------------------   66 (111)
T ss_dssp             CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEEC-------SST--------------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--------CeEEEEEec-------Ccc--------------------
Confidence            46899999999999999875  46766666542        355555533       111                    


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ...+.+.|++++.|++ +++++|+++.
T Consensus        67 -------~~~~~~~~~v~~~Pt~-~~~~~G~~~~   92 (111)
T 2pu9_C           67 -------NKTLAKELGIRVVPTF-KILKENSVVG   92 (111)
T ss_dssp             -------THHHHHHHCCSBSSEE-EEESSSSEEE
T ss_pred             -------hHHHHHHcCCCeeeEE-EEEeCCcEEE
Confidence                   1235567899999995 5569999764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.85  E-value=0.0023  Score=56.84  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++++.    .+.++.++.|-+        |++                    
T Consensus        33 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~v~~~~vd~--------~~~--------------------   80 (140)
T 2dj1_A           33 DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD----NDPPIAVAKIDA--------TSA--------------------   80 (140)
T ss_dssp             TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS----SSSCCEEEEECT--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc----cCCceEEEEEeC--------ccc--------------------
Confidence            4899999999999999865  679999988863    233455555522        110                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.|++++.|+++++ .+|++.
T Consensus        81 -------~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           81 -------SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             -------HHHHHHCCCCccCeEEEE-ECCcEE
Confidence                   235677899999999999 789844

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.85  E-value=0.0019  Score=55.97  Aligned_cols=68  Identities=7%  Similarity=-0.082  Sum_probs=50.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.+++++++       +++.++-|.+        |+..                   
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~~-------------------   65 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIK-------GKVRAGKVDC--------QAYP-------------------   65 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTCH-------------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEeC--------cCCH-------------------
Confidence            3789999999999999876  56777777764       2466666644        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              .+.+.|++++.|++++++++|++.
T Consensus        66 --------~~~~~~~v~~~Pt~~~~~~~~~~~   89 (122)
T 3aps_A           66 --------QTCQKAGIKAYPSVKLYQYERAKK   89 (122)
T ss_dssp             --------HHHHHTTCCSSSEEEEEEEEGGGT
T ss_pred             --------HHHHHcCCCccceEEEEeCCCccc
Confidence                    255678999999999999888753

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.85  E-value=0.0031  Score=55.28  Aligned_cols=66  Identities=5%  Similarity=-0.050  Sum_probs=49.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.+++++++       +.+.++.|.+        |+.                    
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--------~~~--------------------   78 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALK-------DVVKVGAVNA--------DKH--------------------   78 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT-------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc-------CceEEEEEeC--------CCC--------------------
Confidence            3789999999999988765  67887777764       2366666632        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                             +.+.+.|++++.|++++++++|+
T Consensus        79 -------~~l~~~~~v~~~Pt~~~~~~~~~  101 (130)
T 2dml_A           79 -------QSLGGQYGVQGFPTIKIFGANKN  101 (130)
T ss_dssp             -------HHHHHHHTCCSSSEEEEESSCTT
T ss_pred             -------HHHHHHcCCCccCEEEEEeCCCC
Confidence                   23556789999999999999987

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.84  E-value=0.0023  Score=58.76  Aligned_cols=67  Identities=12%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.        .++.++-|.+        |+.                    
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~--------~~v~~~~vd~--------~~~--------------------   74 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKEL--------PQVSFVKLEA--------EGV--------------------   74 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTS--------------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHc--------CCeEEEEEEC--------CCC--------------------
Confidence            4899999999999999876  4555555543        2467777643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|++++++ +|+++.
T Consensus        75 -------~~l~~~~~v~~~Pt~~~~~-~G~~~~   99 (153)
T 2wz9_A           75 -------PEVSEKYEISSVPTFLFFK-NSQKID   99 (153)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -------HHHHHHcCCCCCCEEEEEE-CCEEEE
Confidence                   1356778999999999999 999874

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.82  E-value=0.0018  Score=57.68  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=50.0

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++.        .++.++.|.+        |+.                   
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~--------~~v~~~~v~~--------~~~-------------------   88 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENY--------PSLMFLVIDV--------DEL-------------------   88 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTS-------------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--------CCCEEEEEeC--------ccc-------------------
Confidence            46999999999999999876  4566665543        2466776643        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              ..+.+.|++++.|+++++ ++|+++.
T Consensus        89 --------~~~~~~~~v~~~Pt~~~~-~~G~~~~  113 (139)
T 3d22_A           89 --------SDFSASWEIKATPTFFFL-RDGQQVD  113 (139)
T ss_dssp             --------HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             --------HHHHHHcCCCcccEEEEE-cCCeEEE
Confidence                    235677899999999988 8999874

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.82  E-value=0.002  Score=53.95  Aligned_cols=68  Identities=9%  Similarity=0.093  Sum_probs=47.9

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.++.++.+        ++.++.|.+        |+.                   
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--------~~~~~~vd~--------~~~-------------------   62 (105)
T 3m9j_A           18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--------NVIFLEVDV--------DDC-------------------   62 (105)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST--------TSEEEEEET--------TTC-------------------
T ss_pred             cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc--------CeEEEEEEh--------hhh-------------------
Confidence            36899999999999999876  34555555432        266666543        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              +.+.+.|++++.|+++++ .+|+.+.
T Consensus        63 --------~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (105)
T 3m9j_A           63 --------QDVASESEVKSMPTFQFF-KKGQKVG   87 (105)
T ss_dssp             --------HHHHHHTTCCBSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHHcCCCcCcEEEEE-ECCeEEE
Confidence                    125567899999999999 7888764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.79  E-value=0.0018  Score=56.82  Aligned_cols=66  Identities=9%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ||.|+++|.+.||++|..  +.|.++++++        .++.++.|.+        |+.                     
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--------~~v~~~~vd~--------~~~---------------------   65 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEAN--------KDVTFIKVDV--------DKN---------------------   65 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTC---------------------
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHC--------CCeEEEEEEC--------CCC---------------------
Confidence            899999999999999876  4566655544        3477777754        211                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECC---CCcee
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDP---QGRVV  454 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~p---qGkv~  454 (706)
                            ..+.+.|++++.|++++++.   +|+++
T Consensus        66 ------~~~~~~~~i~~~Pt~~~~~~~~~~G~~~   93 (118)
T 2f51_A           66 ------GNAADAYGVSSIPALFFVKKEGNEIKTL   93 (118)
T ss_dssp             ------HHHHHHTTCCSSSEEEEEEEETTEEEEE
T ss_pred             ------HHHHHhcCCCCCCEEEEEeCCCCcceEE
Confidence                  12567889999999999987   47765

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.79  E-value=0.0003  Score=66.07  Aligned_cols=99  Identities=13%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             eecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCce
Q 005245          339 VSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF  416 (706)
Q Consensus       339 V~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWy  416 (706)
                      +.....+||.|+|+|.+.||++|..  +.|.++.+..+       .+.+++.|.+        |.+.+.           
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~-------~~~~~~~v~~--------d~~~~~-----------   92 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE-------LSHNFVMVNL--------EDEEEP-----------   92 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-------HHTTSEEEEE--------EGGGSC-----------
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhh-------cCCeEEEEEe--------cCCchH-----------
Confidence            3444568999999999999999876  45666544332       1256777765        222110           


Q ss_pred             eeccCCCCCHHHHHHHHHhhCC--CCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhh
Q 005245          417 SVHHPSAIDPAVIRYAKEKWDF--RKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWK  482 (706)
Q Consensus       417 AVpf~~~id~~~~r~ike~~~~--~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~  482 (706)
                                     +.+.|++  ++.|+++++|++|+++..    ++-..|...|.|.....++|.+
T Consensus        93 ---------------~~~~~~~~~~~~Pt~~~~d~~G~~~~~----~~G~~~~~~~~~~~~~~~~l~~  141 (164)
T 1sen_A           93 ---------------KDEDFSPDGGYIPRILFLDPSGKVHPE----IINENGNPSYKYFYVSAEQVVQ  141 (164)
T ss_dssp             ---------------SCGGGCTTCSCSSEEEEECTTSCBCTT----CCCTTSCTTSTTCCCSHHHHHH
T ss_pred             ---------------HHHHhcccCCcCCeEEEECCCCCEEEE----EeCCCCccchhcccCCHHHHHH
Confidence                           0123455  569999999999999854    1122334444444344444443

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.77  E-value=0.0015  Score=59.90  Aligned_cols=69  Identities=6%  Similarity=0.010  Sum_probs=51.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.+++++.+       +++.++.|-+        |+.                  + 
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------d~~------------------~-   67 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK-------NFAVIYLVDI--------TEV------------------P-   67 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEcc--------ccC------------------H-
Confidence            4899999999999999876  57888887774       2477777754        211                  1 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                              .+.+.|++++.|+++++ .+|+.+..
T Consensus        68 --------~~~~~~~i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           68 --------DFNKMYELYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             --------TTTTSSCSCSSCEEEEE-ETTEEEEE
T ss_pred             --------HHHHHcCCCCCCEEEEE-ECCcEEEE
Confidence                    13567899999999999 48888753

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.77  E-value=0.0036  Score=53.80  Aligned_cols=67  Identities=12%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+        |+..                   
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--------~v~~~~vd~--------~~~~-------------------   69 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--------KMVFIKVDV--------DEVS-------------------   69 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTTH-------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--------CCEEEEEEC--------CCCH-------------------
Confidence            6899999999999999876  45666655532        367776643        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++ .+|+++.
T Consensus        70 --------~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (112)
T 1syr_A           70 --------EVTEKENITSMPTFKVY-KNGSSVD   93 (112)
T ss_dssp             --------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             --------HHHHHcCCCcccEEEEE-ECCcEEE
Confidence                    35567899999998877 5898864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.71  E-value=0.0042  Score=53.41  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.++.++.+       +++.++.|.+        |+.                    
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   73 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA-------TDLTVAKLDV--------DTN--------------------   73 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCC--------------------
Confidence            4789999999999999876  45666665543       3577777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        74 -------~~~~~~~~i~~~Pt~~~~-~~g~~~~   98 (121)
T 2i1u_A           74 -------PETARNFQVVSIPTLILF-KDGQPVK   98 (121)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHhcCCCcCCEEEEE-ECCEEEE
Confidence                   125567899999999988 5998864

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.71  E-value=0.003  Score=55.35  Aligned_cols=70  Identities=16%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      .+|.|++.|.|.||++|..  +...++++.+.    -.+  ++|+-+ |.     |+.                      
T Consensus        19 ~~k~vvv~F~a~wC~~C~~--~~p~~~~~~~~----~~~--~~~~~v-d~-----d~~----------------------   62 (105)
T 3zzx_A           19 GNKLVVIDFYATWCGPCKM--IAPKLEELSQS----MSD--VVFLKV-DV-----DEC----------------------   62 (105)
T ss_dssp             TTSEEEEEEECTTCHHHHH--HHHHHHHHHHH----CTT--EEEEEE-ET-----TTC----------------------
T ss_pred             CCCEEEEEEECCCCCCccC--CCcchhhhhhc----cCC--eEEEEE-ec-----ccC----------------------
Confidence            4789999999999999975  44555555432    123  455544 21     211                      


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                           ..|.+.|++++.|+++++ .+|+.+..
T Consensus        63 -----~~l~~~~~V~~~PT~~~~-~~G~~v~~   88 (105)
T 3zzx_A           63 -----EDIAQDNQIACMPTFLFM-KNGQKLDS   88 (105)
T ss_dssp             -----HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCCeecEEEEE-ECCEEEEE
Confidence                 125677899999999888 68988753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.70  E-value=0.0036  Score=56.02  Aligned_cols=69  Identities=6%  Similarity=0.052  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++.+      +.++.++.|-+        |+..                   
T Consensus        25 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~~-------------------   71 (137)
T 2dj0_A           25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKYN------CTGLNFGKVDV--------GRYT-------------------   71 (137)
T ss_dssp             TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHC------SSSCEEEECCT--------TTCH-------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC------CCCeEEEEEeC--------ccCH-------------------
Confidence            4568999999999988765  67888887774      23566666532        2221                   


Q ss_pred             CCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|+++      +.|+++++ .+|+++.
T Consensus        72 --------~~~~~~~v~~~~~~~~~Pt~~~~-~~G~~~~  101 (137)
T 2dj0_A           72 --------DVSTRYKVSTSPLTKQLPTLILF-QGGKEAM  101 (137)
T ss_dssp             --------HHHHHTTCCCCSSSSCSSEEEEE-SSSSEEE
T ss_pred             --------HHHHHccCcccCCcCCCCEEEEE-ECCEEEE
Confidence                    134556776      99999999 7898875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.69  E-value=0.0033  Score=58.38  Aligned_cols=68  Identities=9%  Similarity=0.042  Sum_probs=51.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.+++++++       +++.++-|.+        |++                    
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~-------~~v~~~~vd~--------~~~--------------------  107 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA-------GQVRLAKIDT--------QAH--------------------  107 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTS--------------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CCEEEEEEeC--------Ccc--------------------
Confidence            5899999999999998876  56888887774       2466666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|+++++|+++++ .+|+++.
T Consensus       108 -------~~l~~~~~i~~~Pt~~~~-~~G~~~~  132 (155)
T 2ppt_A          108 -------PAVAGRHRIQGIPAFILF-HKGRELA  132 (155)
T ss_dssp             -------THHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcCCEEEEE-eCCeEEE
Confidence                   135678899999999999 7999864

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=96.68  E-value=0.0064  Score=57.39  Aligned_cols=100  Identities=7%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             ceeeccee-cCc-EEEEEEecCCCChhH---HHHHHHHHHHHhhcccCCCCCeE-EEEEecccCCCCcChhhHHHHHHhh
Q 005245          337 RKVSIDVL-RRK-SVLLLVSDLDVSNEE---LFLLEQMYRESRQLSSRTESQYE-VVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       337 ~kV~Is~L-~gK-~VlL~fSal~~~~~e---~~~L~~iY~elk~~~~~~~~~fE-IVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      +.|+++++ +|| .|+++|=+.|||+|.   ++.|.+.|+++++      .+++ ||-|+. |     +....+.|-+-.
T Consensus        33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~------~g~~~vv~Is~-d-----~~~~~~~~~~~~  100 (171)
T 2pwj_A           33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKA------KGVDSVICVAI-N-----DPYTVNAWAEKI  100 (171)
T ss_dssp             CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHH------TTCSEEEEEES-S-----CHHHHHHHHHHT
T ss_pred             ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH------CCCCEEEEEeC-C-----CHHHHHHHHHHh
Confidence            89999996 996 667788999998875   6779999999974      3588 999986 3     234456675543


Q ss_pred             cC-CCceeeccCCCCCHHHHHHHHHhhCCC--------C---CcEEEEECCCCceecc
Q 005245          411 YM-MPWFSVHHPSAIDPAVIRYAKEKWDFR--------K---KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       411 ~~-MPWyAVpf~~~id~~~~r~ike~~~~~--------~---iP~LVvL~pqGkv~~~  456 (706)
                      .- .|+..+--+   +.+..    +.|++.        |   .|.-+++| +|++...
T Consensus       101 ~~~~~fp~l~D~---~~~~~----~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~  150 (171)
T 2pwj_A          101 QAKDAIEFYGDF---DGSFH----KSLELTTDLSAGLLGIRSERWSAYVV-DGKVKAL  150 (171)
T ss_dssp             TCTTTSEEEECT---TCHHH----HHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             CCCCceEEEECC---ccHHH----HHhCCccccccccCCcccceeEEEEE-CCEEEEE
Confidence            31 122222221   12333    344553        1   45666677 9999864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=96.67  E-value=0.0039  Score=54.00  Aligned_cols=67  Identities=9%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+        |++                    
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~vd~--------~~~--------------------   76 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP--------NAVFLKVDV--------DEL--------------------   76 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CcEEEEEEC--------CCC--------------------
Confidence            4899999999999999876  45666655542        266666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        77 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~  101 (122)
T 2vlu_A           77 -------KPIAEQFSVEAMPTFLFM-KEGDVKD  101 (122)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCEEEE
Confidence                   135567899999998877 8998863

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.65  E-value=0.0022  Score=59.27  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=48.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|++.|.+.||++|..  +.|.+++++.+       +.+.++-|-+        |+.                    
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~-------~~~~~~~vd~--------d~~--------------------   66 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS-------KMAAIYLVDV--------DQT--------------------   66 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT-------TTEEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CcC--------------------
Confidence            3899999999999999876  56776665543       3366666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.|++++.|+++ +..+|+.+
T Consensus        67 -------~~l~~~~~v~~~Pt~~-~~~~G~~v   90 (149)
T 3gix_A           67 -------AVYTQYFDISYIPSTV-FFFNGQHM   90 (149)
T ss_dssp             -------CHHHHHTTCCSSSEEE-EEETTEEE
T ss_pred             -------HHHHHHcCCCccCeEE-EEECCeEE
Confidence                   1255778999999999 77899988

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.62  E-value=0.00085  Score=63.40  Aligned_cols=93  Identities=12%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHH---HHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQ---MYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~---iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      -+||.|+|.|.|.||++|..  +.+.+   +.+.++       .+  +|.|-+        |.+.               
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-------~~--fv~V~v--------D~e~---------------   89 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-------NK--FIMLNL--------MHET---------------   89 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-------HT--CEEEEE--------SSCC---------------
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-------cC--eEEEEe--------cCCc---------------
Confidence            36999999999999999987  33332   222221       12  344543        2110               


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE  483 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  483 (706)
                         .  +.      ...++++++|++++++|+|+++..    ++-..+..-|+++.+..+++-+.
T Consensus        90 ---~--~~------~~~~~v~~~PT~~f~~~~G~~v~~----~~G~~~~~~~~~~~~~~~~ll~~  139 (151)
T 3ph9_A           90 ---T--DK------NLSPDGQYVPRIMFVDPSLTVRAD----IAGRYSNRLYTYEPRDLPLLIEN  139 (151)
T ss_dssp             ---S--CG------GGCTTCCCSSEEEEECTTSCBCTT----CCCSCTTSTTCCCGGGHHHHHHH
T ss_pred             ---h--hh------HhhcCCCCCCEEEEECCCCCEEEE----EeCCcCCcccccchhhHHHHHHH
Confidence               0  00      124577999999999999999873    23344567788988877766543

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.62  E-value=0.0042  Score=55.53  Aligned_cols=67  Identities=7%  Similarity=0.067  Sum_probs=48.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++.        .++.++.|.+        |++                    
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--------~~v~~~~vd~--------d~~--------------------   79 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEF--------PTVKFAKVDA--------DNN--------------------   79 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHC--------TTSEEEEEET--------TTC--------------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHC--------CCCEEEEEEC--------CCC--------------------
Confidence            5799999999999999876  4566655544        2477777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        80 -------~~l~~~~~v~~~Pt~~i~-~~G~~~~  104 (125)
T 1r26_A           80 -------SEIVSKCRVLQLPTFIIA-RSGKMLG  104 (125)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-eCCeEEE
Confidence                   125667899999998887 8998764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.62  E-value=0.0037  Score=56.36  Aligned_cols=67  Identities=18%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.|.++.++.+       +++.++.|-+        |+.                     
T Consensus        24 ~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~---------------------   67 (140)
T 3hz4_A           24 KKPVVVMFYSPACPYCKAMEPYFEEYAKEYG-------SSAVFGRINI--------ATN---------------------   67 (140)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTSEEEEEET--------TTC---------------------
T ss_pred             CCcEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CcC---------------------
Confidence            899999999999999876  46777777664       2477777743        211                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            ..+.+.|++++.|+++++ .+|+.+.
T Consensus        68 ------~~l~~~~~v~~~Pt~~~~-~~G~~~~   92 (140)
T 3hz4_A           68 ------PWTAEKYGVQGTPTFKFF-CHGRPVW   92 (140)
T ss_dssp             ------HHHHHHHTCCEESEEEEE-ETTEEEE
T ss_pred             ------HhHHHHCCCCcCCEEEEE-eCCcEEE
Confidence                  135567899999999999 7898763

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.58  E-value=0.0049  Score=55.72  Aligned_cols=69  Identities=10%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -++|.|+++|.+.||++|..  +.|.+++++.+       +++.++-|.+        |+..                  
T Consensus        53 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~-------~~~~~~~vd~--------~~~~------------------   99 (148)
T 3p2a_A           53 QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA-------GKVRFVKVNT--------EAEP------------------   99 (148)
T ss_dssp             TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTCH------------------
T ss_pred             hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC-------CceEEEEEEC--------cCCH------------------
Confidence            46899999999999998876  56777777653       3466666643        2111                  


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                               .+.+.|++++.|+++++ .+|+.+.
T Consensus       100 ---------~l~~~~~v~~~Pt~~~~-~~G~~~~  123 (148)
T 3p2a_A          100 ---------ALSTRFRIRSIPTIMLY-RNGKMID  123 (148)
T ss_dssp             ---------HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---------HHHHHCCCCccCEEEEE-ECCeEEE
Confidence                     35677899999999999 5898764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=96.56  E-value=0.0077  Score=60.76  Aligned_cols=100  Identities=8%  Similarity=0.096  Sum_probs=65.1

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-CChhH-------HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNEE-------LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH  404 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~e-------~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~  404 (706)
                      ..+|+.|++++++||.|.|+|=..| ||.|.       ++.|.+.|           .+++||-||. |     +....+
T Consensus        35 d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~~-----------~gv~VvgIS~-D-----s~~~~~   97 (224)
T 3keb_A           35 DDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSW-----------PHLKLIVITV-D-----SPSSLA   97 (224)
T ss_dssp             ETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTTC-----------TTSEEEEEES-S-----CHHHHH
T ss_pred             CCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHHc-----------CCCEEEEEEC-C-----CHHHHH
Confidence            4568899999999999999998777 67676       23333331           3589999985 4     244566


Q ss_pred             HHHHhhc--CCCceeeccCCCCCHHHHHHHHHhhCCCC---------CcEEEEECCCCceeccc
Q 005245          405 KFEALQY--MMPWFSVHHPSAIDPAVIRYAKEKWDFRK---------KPILVVLDPQGRVVNQN  457 (706)
Q Consensus       405 ~Fe~~~~--~MPWyAVpf~~~id~~~~r~ike~~~~~~---------iP~LVvL~pqGkv~~~n  457 (706)
                      .|-+-..  ..|-++       |.. -..+.+.|++..         .|..+|+|++|++....
T Consensus        98 ~f~~~~gl~~fplLs-------D~~-~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~  153 (224)
T 3keb_A           98 RARHEHGLPNIALLS-------TLR-GRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSE  153 (224)
T ss_dssp             HHHHHHCCTTCEEEE-------STT-CTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEE
T ss_pred             HHHHHcCCCCceEEE-------cCC-chHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEE
Confidence            6755432  222222       210 023444566643         79999999999998543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=96.54  E-value=0.002  Score=54.86  Aligned_cols=70  Identities=9%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++++.    .+.++.++-|-+        ++                  .+ 
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~v~~~~vd~--------~~------------------~~-   71 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA----EGSEIRLAKVDA--------TE------------------ES-   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT----TCCCCBCEEEET--------TT------------------CC-
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc----cCCcEEEEEEcC--------CC------------------CH-
Confidence            5899999999999998765  678888877752    233455554422        11                  11 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              .+.+.|++++.|+++++ ++|+.+
T Consensus        72 --------~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           72 --------DLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             --------SSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             --------HHHHHCCCCcccEEEEE-eCCCcC
Confidence                    23456799999999999 688765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.49  E-value=0.0049  Score=53.65  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+       +++                    
T Consensus        35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--------~~~~~~vd~-------~~~--------------------   79 (124)
T 1faa_A           35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--------DVIFLKLDC-------NQE--------------------   79 (124)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEEC-------SST--------------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--------CCEEEEEec-------Ccc--------------------
Confidence            36899999999999999875  45666665542        355555532       111                    


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             .+.+.+.|++++.|++++. ++|+++.
T Consensus        80 -------~~~~~~~~~v~~~Pt~~~~-~~G~~~~  105 (124)
T 1faa_A           80 -------NKTLAKELGIRVVPTFKIL-KENSVVG  105 (124)
T ss_dssp             -------THHHHHHHCCSSSSEEEEE-ETTEEEE
T ss_pred             -------hHHHHHHcCCCeeeEEEEE-eCCcEEE
Confidence                   1235567899999996655 8898764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.49  E-value=0.0048  Score=54.12  Aligned_cols=70  Identities=10%  Similarity=0.150  Sum_probs=49.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.+.      .++.++.|.+        |+.                    
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~------~~v~~~~vd~--------d~~--------------------   77 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG------DKVGFYKVDV--------DEQ--------------------   77 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH------HHSEEEEEET--------TTC--------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC------CcEEEEEEEC--------cCC--------------------
Confidence            4889999999999999876  346555544431      1377777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                             ..+.+.|++.+.|+++++ ++|+++..
T Consensus        78 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~~  103 (121)
T 2j23_A           78 -------SQIAQEVGIRAMPTFVFF-KNGQKIDT  103 (121)
T ss_dssp             -------HHHHHHHTCCSSSEEEEE-ETTEEEEE
T ss_pred             -------HHHHHHcCCCcccEEEEE-ECCeEEee
Confidence                   135567799999999988 58988653

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.47  E-value=0.0062  Score=51.60  Aligned_cols=67  Identities=10%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.        .++.++.|.+        |+.                    
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~--------~~v~~~~v~~--------~~~--------------------   68 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKF--------PNVTFLKVDV--------DEL--------------------   68 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHC--------SSEEEEEEET--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhC--------CCcEEEEEEc--------ccc--------------------
Confidence            4899999999999999875  3455554443        1466666643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        69 -------~~~~~~~~v~~~Pt~~~~-~~G~~~~   93 (113)
T 1ti3_A           69 -------KAVAEEWNVEAMPTFIFL-KDGKLVD   93 (113)
T ss_dssp             -------HHHHHHHHCSSTTEEEEE-ETTEEEE
T ss_pred             -------HHHHHhCCCCcccEEEEE-eCCEEEE
Confidence                   124566799999999998 6998864

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.47  E-value=0.0082  Score=53.72  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +++.|+++|.+.||++|..  +.|.+++++..       +++.++.|.+        |..                    
T Consensus        49 ~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--------~~~--------------------   93 (140)
T 1v98_A           49 GAPLTLVDFFAPWCGPCRLVSPILEELARDHA-------GRLKVVKVNV--------DEH--------------------   93 (140)
T ss_dssp             CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC--------------------
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CceEEEEEEC--------CCC--------------------
Confidence            3434999999999998876  45666666553       2577777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        94 -------~~l~~~~~v~~~Pt~~~~-~~G~~~~  118 (140)
T 1v98_A           94 -------PGLAARYGVRSVPTLVLF-RRGAPVA  118 (140)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHCCCCccCEEEEE-eCCcEEE
Confidence                   125677899999999999 7999864

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.45  E-value=0.0065  Score=51.85  Aligned_cols=67  Identities=9%  Similarity=0.137  Sum_probs=47.2

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.+        ++.++.|.+        |+.                    
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~~~~~~v~~--------~~~--------------------   70 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--------GAIFLKVDV--------DEL--------------------   70 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEET--------TTS--------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CcEEEEEEc--------ccC--------------------
Confidence            4899999999999999876  34555554431        466666532        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++ ++|+++.
T Consensus        71 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   95 (118)
T 2vm1_A           71 -------KDVAEAYNVEAMPTFLFI-KDGEKVD   95 (118)
T ss_dssp             -------HHHHHHTTCCSBSEEEEE-ETTEEEE
T ss_pred             -------HHHHHHcCCCcCcEEEEE-eCCeEEE
Confidence                   235567899999999988 7898764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=96.44  E-value=0.013  Score=51.58  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=50.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.+.++.++++..  ....++.++-|-+        |+.                    
T Consensus        32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~~~~~v~~~~vd~--------~~~--------------------   81 (127)
T 3h79_A           32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQK--RNHLTFVAARIDG--------EKY--------------------   81 (127)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTS--TTTTTEEEEEEET--------TTC--------------------
T ss_pred             CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhc--ccCCCeEEEEEEc--------ccc--------------------
Confidence            3899999999999999876  5677777776531  1234455555422        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                             +.+.+.|++++.|+++++.+.|++
T Consensus        82 -------~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 -------PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             -------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             -------HhHHHhcCCccCCEEEEEeCCCCC
Confidence                   235677899999999999887764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.40  E-value=0.0084  Score=49.85  Aligned_cols=67  Identities=13%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.        .++.++.|.+        |+.                    
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~--------~~~~~~~v~~--------~~~--------------------   61 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEI--------PEVEFAKVDV--------DQN--------------------   61 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHC--------CCCEEEEEec--------cCC--------------------
Confidence            5899999999999999876  3455554443        1477777754        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|++++++ +|+.+.
T Consensus        62 -------~~~~~~~~v~~~Pt~~~~~-~g~~~~   86 (104)
T 2vim_A           62 -------EEAAAKYSVTAMPTFVFIK-DGKEVD   86 (104)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -------HHHHHHcCCccccEEEEEe-CCcEEE
Confidence                   1355678999999988885 898765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.40  E-value=0.025  Score=54.30  Aligned_cols=154  Identities=8%  Similarity=0.018  Sum_probs=83.1

Q ss_pred             eecCcEEEEEEecC-CCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          343 VLRRKSVLLLVSDL-DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       343 ~L~gK~VlL~fSal-~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .++++.++++|++. ||++|.  .+..+++++.+    ..+++.++.|-+        |  +.                 
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~--~~~~~~~~la~----~~~~v~~~~vd~--------~--~~-----------------   65 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCD--QLKQLVQELSE----LTDKLSYEIVDF--------D--TP-----------------   65 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHH--HHHHHHHHHHT----TCTTEEEEEEET--------T--SH-----------------
T ss_pred             hcCCCeEEEEEecCCCCchhH--HHHHHHHHHHh----hCCceEEEEEeC--------C--Cc-----------------
Confidence            45677889999999 999986  46777777763    234566666632        1  11                 


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhhcccccccccccCCCCc-c
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVI-P  500 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w~lelLvd~id~~I-~  500 (706)
                            --+.+.+.|++++.|+++++ .+|+....      .-.|.   | +.....++-..-. ...--+..++... .
T Consensus        66 ------~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~------~~~G~---~-~~~~l~~~l~~~l-~~~~~~~~l~~~~~~  127 (226)
T 1a8l_A           66 ------EGKELAKRYRIDRAPATTIT-QDGKDFGV------RYFGL---P-AGHEFAAFLEDIV-DVSREETNLMDETKQ  127 (226)
T ss_dssp             ------HHHHHHHHTTCCSSSEEEEE-ETTBCCSE------EEESC---C-CTTHHHHHHHHHH-HHHHTCCCCCHHHHH
T ss_pred             ------ccHHHHHHcCCCcCceEEEE-cCCceeeE------EEecc---C-cHHHHHHHHHHHH-hhcCCCCCCCHHHHH
Confidence                  11335567899999999999 34432100      00121   1 1111111110000 0000000111111 1


Q ss_pred             cccc-CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC----CceeEEEeccCC
Q 005245          501 TWIM-EQKHICLYGGEDL-EWVRKFTALMGAVARAAG----IALEMLYVGKSN  547 (706)
Q Consensus       501 ~~i~-egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~----~~~E~v~Vgkdn  547 (706)
                      .... .++.++++|.+.+ ..|+++.+.+.++++..+    ..+.++.|.-+.
T Consensus       128 ~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~  180 (226)
T 1a8l_A          128 AIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE  180 (226)
T ss_dssp             HHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG
T ss_pred             HHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc
Confidence            1112 4556588888832 345999999999987643    467777776664

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.37  E-value=0.016  Score=66.53  Aligned_cols=145  Identities=12%  Similarity=0.017  Sum_probs=86.3

Q ss_pred             ceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          342 DVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       342 s~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +.++||.|++.|.+.||++|..  +.|.+++++++       +++.++.|..        |+..                
T Consensus       451 ~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~-------~~v~~~~vd~--------~~~~----------------  499 (780)
T 3apo_A          451 PASDKEPWLVDFFAPWSPPSRALLPELRKASTLLY-------GQLKVGTLDC--------TIHE----------------  499 (780)
T ss_dssp             CTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTCH----------------
T ss_pred             HHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCeEEEEEeC--------CCCH----------------
Confidence            3448999999999999998764  56777777764       3466777643        2111                


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhhccc-ccccccccCCCC
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETW-RIDLLADSVDPV  498 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e~w-~lelLvd~id~~  498 (706)
                                 .+.+.|++++.|++++++ +|++....        |    +++.+.+.+.-++-.- ....|.+   ..
T Consensus       500 -----------~~~~~~~v~~~Pt~~~~~-~g~~~~~~--------g----~~~~~~l~~fi~~~~~~~v~~l~~---~~  552 (780)
T 3apo_A          500 -----------GLCNMYNIQAYPTTVVFN-QSSIHEYE--------G----HHSAEQILEFIEDLRNPSVVSLTP---ST  552 (780)
T ss_dssp             -----------HHHHHTTCCSSSEEEEEE-TTEEEEEC--------S----CSCHHHHHHHHHHHHSCSEEECCH---HH
T ss_pred             -----------HHHHHcCCCcCCeEEEEc-CCceeeec--------C----cccHHHHHHHHHhhcccceeecCc---cc
Confidence                       156778999999999994 57653211        2    2344333332211100 0011110   01


Q ss_pred             ccccccC---ceEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245          499 IPTWIME---QKHICLYGGEDLEW---VRKFTALMGAVARAAGIALEMLYVGKS  546 (706)
Q Consensus       499 I~~~i~e---gK~I~LYgg~d~~W---ir~FT~~l~~I~~~~~~~~E~v~Vgkd  546 (706)
                      ..+.+..   ++.++++|.+  .|   |+++.+.+.++++.....+-++.|..+
T Consensus       553 f~~~v~~~~~~~~~lv~F~a--p~C~~c~~~~p~~~~lA~~~~~~v~~~~vd~~  604 (780)
T 3apo_A          553 FNELVKQRKHDEVWMVDFYS--PWSHPSQVLMPEWKRMARTLTGLINVGSVDCG  604 (780)
T ss_dssp             HHHHTTTCCTTCCEEEEEEC--TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred             HHHHhhccCCCCeEEEEEEC--CCCHHHHHhhHHHHHHHHHhhCCeEEEEEECc
Confidence            1122222   5667777777  67   688999999998875545666666544

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=96.35  E-value=0.0077  Score=58.03  Aligned_cols=68  Identities=9%  Similarity=-0.019  Sum_probs=51.2

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .+||.|+++|.+.||++|..  +.|.+++++++       +++.++.|-+        |+.                   
T Consensus       112 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-------~~v~~~~vd~--------~~~-------------------  157 (210)
T 3apq_A          112 NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD-------GLLRIGAVNC--------GDD-------------------  157 (210)
T ss_dssp             HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB-------TTBEEEEEET--------TTC-------------------
T ss_pred             ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc-------CceEEEEEEC--------Ccc-------------------
Confidence            57999999999999999876  56777777663       2466666643        211                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              ..+.+.|++++.|+++++ ++|+++
T Consensus       158 --------~~l~~~~~v~~~Pt~~~~-~~G~~~  181 (210)
T 3apq_A          158 --------RMLCRMKGVNSYPSLFIF-RSGMAA  181 (210)
T ss_dssp             --------HHHHHHTTCCSSSEEEEE-CTTSCC
T ss_pred             --------HHHHHHcCCCcCCeEEEE-ECCCce
Confidence                    135567899999999999 999874

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.31  E-value=0.0017  Score=57.78  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             cCcEEEEEEecCCCC--------------hhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          345 RRKSVLLLVSDLDVS--------------NEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       345 ~gK~VlL~fSal~~~--------------~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +||.|+++|.+.||+              +|..  +.+.+++++.+       +++.++-|.+        |+.      
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------d~~------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------------CEEEEEET--------TSC------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCC------
Confidence            489999999999999              8654  45555554442       2466666643        211      


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                  +         .+.+.|++++.|+++++ ++|+++.
T Consensus        79 ------------~---------~l~~~~~v~~~Pt~~~~-~~G~~~~  103 (123)
T 1oaz_A           79 ------------P---------GTAPKYGIRGIPTLLLF-KNGEVAA  103 (123)
T ss_dssp             ------------T---------TTGGGGTCCBSSEEEEE-ESSSEEE
T ss_pred             ------------H---------HHHHHcCCCccCEEEEE-ECCEEEE
Confidence                        1         24567899999999999 9999864

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=96.30  E-value=0.005  Score=55.29  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             ecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          344 LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +++ .|+++|.+.||++|...  ...++++.+.   .+  +.++.|.+-+      +.+...                  
T Consensus        30 ~~~-~vlv~F~a~wC~~C~~~--~p~l~~l~~~---~~--v~~~~vd~~~------~~~~~~------------------   77 (135)
T 3emx_A           30 LQG-DAILAVYSKTCPHCHRD--WPQLIQASKE---VD--VPIVMFIWGS------LIGERE------------------   77 (135)
T ss_dssp             HTS-SEEEEEEETTCHHHHHH--HHHHHHHHTT---CC--SCEEEEEECT------TCCHHH------------------
T ss_pred             hCC-cEEEEEECCcCHhhhHh--ChhHHHHHHH---CC--CEEEEEECCC------chhhhh------------------
Confidence            344 89999999999998762  3444455421   11  7777776522      112111                  


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                        ....+.+.+.|++++.|++++++ +|+++.
T Consensus        78 --~d~~~~l~~~~~v~~~Pt~~~~~-~G~~v~  106 (135)
T 3emx_A           78 --LSAARLEMNKAGVEGTPTLVFYK-EGRIVD  106 (135)
T ss_dssp             --HHHHHHHHHHHTCCSSSEEEEEE-TTEEEE
T ss_pred             --hhhhHHHHHHcCCceeCeEEEEc-CCEEEE
Confidence              12234567789999999999998 998764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.24  E-value=0.0089  Score=58.82  Aligned_cols=70  Identities=4%  Similarity=-0.086  Sum_probs=52.8

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.+.+++++++.    .+.++.++.|.+        +.++                    
T Consensus        30 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~v~~~~vd~--------~~~~--------------------   77 (244)
T 3q6o_A           30 RSAWAVEFFASWCGHCIAFAPTWXALAEDVKA----WRPALYLAALDC--------AEET--------------------   77 (244)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTGG----GTTTEEEEEEET--------TSTT--------------------
T ss_pred             CCeEEEEEECCcCHHHHHHHHHHHHHHHHHHh----ccCcEEEEEEeC--------Cchh--------------------
Confidence            599999999999999876  678888888863    234688888864        1111                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                           -+.+.+.|++++.|+++++++.++
T Consensus        78 -----~~~l~~~~~v~~~Pt~~~~~~g~~  101 (244)
T 3q6o_A           78 -----NSAVCRDFNIPGFPTVRFFXAFTX  101 (244)
T ss_dssp             -----THHHHHHTTCCSSSEEEEECTTCC
T ss_pred             -----hHHHHHHcCCCccCEEEEEeCCCc
Confidence                 134667789999999999997443

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.23  E-value=0.0055  Score=52.90  Aligned_cols=69  Identities=12%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             ecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          344 LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      .+||.|+++|.+.||++|..  +...++++.+.   -  ++.++-|.+        |+.                     
T Consensus        31 ~~~~~~vv~f~a~wC~~C~~--~~~~~~~~~~~---~--~~~~~~vd~--------~~~---------------------   74 (117)
T 2xc2_A           31 HKNKLVVVDFFATWCGPCKT--IAPLFKELSEK---Y--DAIFVKVDV--------DKL---------------------   74 (117)
T ss_dssp             TTTSCEEEEEECTTCHHHHH--HHHHHHHHHTT---S--SSEEEEEET--------TTS---------------------
T ss_pred             CCCCEEEEEEECCCCHhHHH--HhHHHHHHHHH---c--CcEEEEEEC--------Ccc---------------------
Confidence            46899999999999999875  33445555421   1  344444432        211                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            +.+.+.|++++.|+++++ ++|+++.
T Consensus        75 ------~~~~~~~~v~~~Pt~~~~-~~G~~~~   99 (117)
T 2xc2_A           75 ------EETARKYNISAMPTFIAI-KNGEKVG   99 (117)
T ss_dssp             ------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ------HHHHHHcCCCccceEEEE-eCCcEEE
Confidence                  235567899999998887 7898764

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.19  E-value=0.0094  Score=62.60  Aligned_cols=101  Identities=14%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             CCCCceeecceecCcEEEEEEec-CCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSD-LDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSa-l~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      +.+|+.|++++++||.|.|+|=- .++|.|-.. +.+ |.+.      ..++++||=||. |     +....+.|-+-. 
T Consensus        11 ~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e-~~~-~~~~------~~~~~~v~gis~-D-----~~~~~~~f~~~~-   75 (322)
T 4eo3_A           11 TDEGKTFTHVDLYGKYTILFFFPKAGTSGSTRE-AVE-FSRE------NFEKAQVVGISR-D-----SVEALKRFKEKN-   75 (322)
T ss_dssp             ETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHH-HHH-HHHS------CCTTEEEEEEES-C-----CHHHHHHHHHHH-
T ss_pred             CCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHH-HHH-HHHH------hhCCCEEEEEeC-C-----CHHHHHHHHHhh-
Confidence            46788999999999999999942 233334332 111 2221      345799999985 5     245567786543 


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCC----CCcEEEEECCCCceec
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFR----KKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~----~iP~LVvL~pqGkv~~  455 (706)
                      .+|+--+     .|..  ..+.+.|++-    .+|+..|+|++|++..
T Consensus        76 ~l~fp~l-----~D~~--~~v~~~ygv~~~~~~~r~tfiId~~G~i~~  116 (322)
T 4eo3_A           76 DLKVTLL-----SDPE--GILHEFFNVLENGKTVRSTFLIDRWGFVRK  116 (322)
T ss_dssp             TCCSEEE-----ECTT--CHHHHHTTCEETTEECCEEEEECTTSBEEE
T ss_pred             CCceEEE-----EcCc--hHHHHhcCCCCCCcCccEEEEECCCCEEEE
Confidence            3443333     2322  2455667773    4688999999999963

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.10  E-value=0.022  Score=59.01  Aligned_cols=151  Identities=9%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      .+.++++|.+.||++|+-  +.|.++.++++       +.+-+++|   |       .++.                   
T Consensus       135 ~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~-------~~i~f~~v---d-------~~~~-------------------  178 (361)
T 3uem_A          135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFK-------GKILFIFI---D-------SDHT-------------------  178 (361)
T ss_dssp             CCEEEEEECCSSSSSHHHHHHHHHHHHGGGT-------TTCEEEEE---C-------TTSG-------------------
T ss_pred             CCcEEEEEEeCCchhHHHHHHHHHHHHHHcc-------CceEEEEe---c-------CChH-------------------
Confidence            356889999999988764  44666555554       23444444   2       2210                   


Q ss_pred             CCHHHHHHHHHhhCCCC--CcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhhc----------------c
Q 005245          424 IDPAVIRYAKEKWDFRK--KPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEE----------------T  485 (706)
Q Consensus       424 id~~~~r~ike~~~~~~--iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~e----------------~  485 (706)
                          .-+.+.+.|++++  .|++++++..+...         .|..++-++|.+.+.+.-++-                .
T Consensus       179 ----~~~~~~~~fgi~~~~~P~~~~~~~~~~~~---------ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~  245 (361)
T 3uem_A          179 ----DNQRILEFFGLKKEECPAVRLITLEEEMT---------KYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED  245 (361)
T ss_dssp             ----GGHHHHHHTTCCTTTCSEEEEEECC--CC---------EECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTT
T ss_pred             ----HHHHHHHHcCCCccCCccEEEEEcCCccc---------ccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcc
Confidence                0123456679987  99999998744321         122223356655555443321                1


Q ss_pred             cccccccccCC-CCccccc-cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCC--ceeEEEeccC
Q 005245          486 WRIDLLADSVD-PVIPTWI-MEQKHICLYGGEDL-EWVRKFTALMGAVARAAGI--ALEMLYVGKS  546 (706)
Q Consensus       486 w~lelLvd~id-~~I~~~i-~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~--~~E~v~Vgkd  546 (706)
                      |.-..+. .++ ....+.+ ..+|.++++|.+.+ ..|+++.+.+.++++....  .+-++.|..+
T Consensus       246 ~~~~~v~-~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~  310 (361)
T 3uem_A          246 WDKQPVK-VLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST  310 (361)
T ss_dssp             TTTSSSE-EECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETT
T ss_pred             cccCCcE-EeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence            1100000 000 1111223 47999999999943 3459999999999887443  3555555443

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.08  E-value=0.0062  Score=55.02  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.++.++.        .+  +.|+-+ |.     |+.                  + 
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~--------~~--v~~~~v-d~-----~~~------------------~-   73 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKF--------PE--TKFVKA-IV-----NSC------------------I-   73 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHC--------SS--EEEEEE-CC-----SSS------------------C-
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHC--------CC--cEEEEE-Eh-----hcC------------------c-
Confidence            3689999999999999876  3455544432        12  555544 21     111                  0 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                 +.|++++.|+++++. +|+++.
T Consensus        74 -----------~~~~i~~~Pt~~~~~-~G~~v~   94 (135)
T 2dbc_A           74 -----------EHYHDNCLPTIFVYK-NGQIEG   94 (135)
T ss_dssp             -----------SSCCSSCCSEEEEES-SSSCSE
T ss_pred             -----------ccCCCCCCCEEEEEE-CCEEEE
Confidence                       367999999999997 998875

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.01  E-value=0.0074  Score=58.89  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++++       +++.++.|.+        |..                  + 
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-------~~v~~~~vd~--------d~~------------------~-   74 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQN------------------P-   74 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTCEEEEEET--------TTC------------------T-
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc-------CCcEEEEEEC--------CCC------------------H-
Confidence            4899999999999999876  56888777764       2377777754        211                  1 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              .+.+.|++++.|+++++. +|+++.
T Consensus        75 --------~l~~~~~v~~~Pt~~~~~-~G~~~~   98 (222)
T 3dxb_A           75 --------GTAPKYGIRGIPTLLLFK-NGEVAA   98 (222)
T ss_dssp             --------TTGGGGTCCSBSEEEEEE-TTEEEE
T ss_pred             --------HHHHHcCCCcCCEEEEEE-CCeEEE
Confidence                    134578999999999995 888764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=95.98  E-value=0.018  Score=55.39  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.|.++.++++.    ...++.++.|-+        |+.                    
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----~~~~v~~~~vd~--------~~~--------------------  193 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSK----RSPPIPLAKVDA--------TAE--------------------  193 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHT----SSSCCCEEEEET--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhc----cCCcEEEEEEEC--------CCC--------------------
Confidence            4689999999999999865  689999988873    344577777743        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             +.+.+.|++++.|+++++. +|+.+.
T Consensus       194 -------~~l~~~~~v~~~Pt~~~~~-~g~~~~  218 (241)
T 3idv_A          194 -------TDLAKRFDVSGYPTLKIFR-KGRPYD  218 (241)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -------HHHHHHcCCcccCEEEEEE-CCeEEE
Confidence                   1267788999999999997 477653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=95.95  E-value=0.029  Score=53.79  Aligned_cols=71  Identities=8%  Similarity=0.033  Sum_probs=49.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .++.++++|.+.||++|..  +.|.+++++.+.   +..+++.++.|-+        |+.                    
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~---~~~~~v~~~~vd~--------~~~--------------------  181 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTK---AGKGKILGDMVEA--------IEY--------------------  181 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHH---TTCCCEEEEEEEG--------GGC--------------------
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhccc---ccCCcEEEEEEEc--------ccC--------------------
Confidence            3556699999999999876  678888887752   1234677777643        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.|++++.|+++++ ++|+.+
T Consensus       182 -------~~l~~~~~v~~~Pt~~~~-~~G~~~  205 (226)
T 1a8l_A          182 -------PEWADQYNVMAVPKIVIQ-VNGEDR  205 (226)
T ss_dssp             -------HHHHHHTTCCSSCEEEEE-ETTEEE
T ss_pred             -------HHHHHhCCCcccCeEEEE-eCCcee
Confidence                   125567899999998887 588765

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=95.85  E-value=0.011  Score=52.26  Aligned_cols=76  Identities=8%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             cCcEEEEEEecC-------CCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245          345 RRKSVLLLVSDL-------DVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW  415 (706)
Q Consensus       345 ~gK~VlL~fSal-------~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW  415 (706)
                      +||.|+++|.+.       ||++|..  +.|.+++++++       +++.++.|.+       ++.  ..         |
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~-------~~~~~~~vd~-------~~~--~~---------~   77 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS-------EGCVFIYCQV-------GEK--PY---------W   77 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC-------TTEEEEEEEC-------CCH--HH---------H
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC-------CCcEEEEEEC-------CCc--hh---------h
Confidence            489999999999       9999876  45665554432       3577777755       111  11         2


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      .     +. .    ..+.+.|+++++|+++++++.+++..
T Consensus        78 ~-----d~-~----~~~~~~~~i~~~Pt~~~~~~~~~~~g  107 (123)
T 1wou_A           78 K-----DP-N----NDFRKNLKVTAVPTLLKYGTPQKLVE  107 (123)
T ss_dssp             H-----CT-T----CHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             h-----ch-h----HHHHHHCCCCeeCEEEEEcCCceEec
Confidence            1     10 1    12445589999999999998555553

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=95.79  E-value=0.032  Score=53.96  Aligned_cols=82  Identities=12%  Similarity=0.082  Sum_probs=50.7

Q ss_pred             cceecCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW  415 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW  415 (706)
                      ...-+||.|+|.|.+.||++|....     ..++-+.+.       ++  +|+|.+ |.     |+..+-=..|      
T Consensus        34 ~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~-------~~--fv~ikV-D~-----de~~~l~~~y------   92 (173)
T 3ira_A           34 KARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN-------EA--FVSIKV-DR-----EERPDIDNIY------   92 (173)
T ss_dssp             HHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH-------HH--CEEEEE-ET-----TTCHHHHHHH------
T ss_pred             HHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH-------hc--Cceeee-CC-----cccCcHHHHH------
Confidence            3345799999999999999998721     123333333       12  466654 42     2211111111      


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                                   ..++...+++.++|++|+++|+|+++..
T Consensus        93 -------------~~~~q~~~gv~g~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A           93 -------------MTVCQIILGRGGWPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             -------------HHHHHHHHSCCCSSEEEEECTTSCEEEE
T ss_pred             -------------HHHHHHHcCCCCCcceeeECCCCCceee
Confidence                         1123334799999999999999999864

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=95.59  E-value=0.042  Score=47.19  Aligned_cols=69  Identities=9%  Similarity=0.034  Sum_probs=48.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|+++|.+.||++|..  +.|.+++++++..  ....++.++.|-+        |+.           |        
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~--~~~~~v~~~~vd~--------~~~-----------~--------   74 (121)
T 2djj_A           24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS--EFKDRVVIAKVDA--------TAN-----------D--------   74 (121)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS--SCTTSSEEEEEET--------TTS-----------C--------
T ss_pred             CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhc--ccCCceEEEEEEC--------ccc-----------c--------
Confidence            6899999999999999876  5788888887521  0123566666633        110           0        


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                       +        .+  ++++.|+++++++.|++
T Consensus        75 -~--------~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           75 -V--------PD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             -C--------SS--CCSSSSEEEEECSSCTT
T ss_pred             -c--------cc--ccCcCCeEEEEeCcCCC
Confidence             1        11  88999999999998883

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=95.38  E-value=0.013  Score=47.12  Aligned_cols=62  Identities=18%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             cEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          347 KSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       347 K~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      +.++++|++.||++|..  +.|.++.++..       ++++++.|.+        |++                  +   
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~------------------~---   46 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP-------DAVEVEYINV--------MEN------------------P---   46 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS-------SSEEEEEEES--------SSS------------------C---
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC-------CceEEEEEEC--------CCC------------------H---
Confidence            46789999999988765  56777666542       4688888865        211                  1   


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                            .+.+.|++++.|++++   +|++
T Consensus        47 ------~~~~~~~v~~~Pt~~~---~G~~   66 (85)
T 1fo5_A           47 ------QKAMEYGIMAVPTIVI---NGDV   66 (85)
T ss_dssp             ------CTTTSTTTCCSSEEEE---TTEE
T ss_pred             ------HHHHHCCCcccCEEEE---CCEE
Confidence                  1335679999999999   8886

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.28  E-value=0.003  Score=52.36  Aligned_cols=68  Identities=19%  Similarity=0.312  Sum_probs=45.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||+.|..  +.|.++.++.+       +++.++.|.+        |++                    
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~v~~--------~~~--------------------   62 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE-------GKVKVVKVNV--------DEN--------------------   62 (106)
Confidence            4789999999999999876  45655555543       2344444432        111                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        63 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~   87 (106)
T 2yj7_A           63 -------PNTAAQYGIRSIPTLLLF-KNGQVVD   87 (106)
Confidence                   123456788999999999 8898753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=95.29  E-value=0.016  Score=46.58  Aligned_cols=60  Identities=10%  Similarity=0.155  Sum_probs=43.5

Q ss_pred             EEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCH
Q 005245          349 VLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP  426 (706)
Q Consensus       349 VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~  426 (706)
                      +.++|++.||++|..  +.|.++.++..       ++++++.|.+        |++.                       
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~~-----------------------   45 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG-------DKIDVEKIDI--------MVDR-----------------------   45 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC-------SSCCEEEECT--------TTCG-----------------------
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc-------CCeEEEEEEC--------CCCH-----------------------
Confidence            578899999988765  56777776663       3588888854        2111                       


Q ss_pred             HHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          427 AVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       427 ~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                          .+.+.|++++.|++++   +|++
T Consensus        46 ----~~~~~~~v~~~Pt~~~---~G~~   65 (85)
T 1nho_A           46 ----EKAIEYGLMAVPAIAI---NGVV   65 (85)
T ss_dssp             ----GGGGGTCSSCSSEEEE---TTTE
T ss_pred             ----HHHHhCCceeeCEEEE---CCEE
Confidence                2446789999999999   8886

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=94.99  E-value=0.046  Score=61.10  Aligned_cols=71  Identities=4%  Similarity=-0.012  Sum_probs=54.1

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      ||.|+++|.|.||++|..  +.+.+++++++.    .+..+.++-|-+        |.|+                    
T Consensus        30 ~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~----~~~~v~~~~VD~--------d~d~--------------------   77 (519)
T 3t58_A           30 SSAWAVEFFASWCGHAIAFAPTWKELANDVKD----WRPALNLAVLDC--------AEET--------------------   77 (519)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHGG----GTTTEEEEEEET--------TSGG--------------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhC----cCCcEEEEEEEC--------Cccc--------------------
Confidence            599999999999999776  689999999863    234688888754        2111                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECC---CCce
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDP---QGRV  453 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~p---qGkv  453 (706)
                           -+.+.+.|++++.|+++++++   +|+.
T Consensus        78 -----~~~l~~~~~V~~~PTl~~f~~g~~~G~~  105 (519)
T 3t58_A           78 -----NSAVCREFNIAGFPTVRFFQAFTKNGSG  105 (519)
T ss_dssp             -----GHHHHHHTTCCSBSEEEEECTTCCSCCC
T ss_pred             -----cHHHHHHcCCcccCEEEEEcCcccCCCc
Confidence                 134667889999999999997   6653

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=94.89  E-value=0.039  Score=53.73  Aligned_cols=101  Identities=10%  Similarity=-0.002  Sum_probs=65.4

Q ss_pred             CCceeeccee-cCcEEEE-EEecCCCChh---HHHHHHHHHHHHhhcccCCCCCe-EEEEEecccCCCCcChhhHHHHHH
Q 005245          335 TKRKVSIDVL-RRKSVLL-LVSDLDVSNE---ELFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       335 ~~~kV~Is~L-~gK~VlL-~fSal~~~~~---e~~~L~~iY~elk~~~~~~~~~f-EIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      .-+.|+++++ +||.|.| +|=+.|||.|   |++.+.+.|+++++      .++ +||=||. |     +-...+.|-+
T Consensus        35 ~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~------~g~d~VigIS~-D-----~~~~~~~f~~  102 (176)
T 4f82_A           35 GPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRA------AGIDEIWCVSV-N-----DAFVMGAWGR  102 (176)
T ss_dssp             EEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH------TTCCEEEEEES-S-----CHHHHHHHHH
T ss_pred             CceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHh------CCCCEEEEEeC-C-----CHHHHHHHHH
Confidence            3478999996 9996655 5667788877   66789999999984      347 9999986 3     2345666755


Q ss_pred             hhc-C--CCceeeccCCCCCHHHHHHHHHhhCCC-----------CCcEEEEECCCCceeccc
Q 005245          409 LQY-M--MPWFSVHHPSAIDPAVIRYAKEKWDFR-----------KKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       409 ~~~-~--MPWyAVpf~~~id~~~~r~ike~~~~~-----------~iP~LVvL~pqGkv~~~n  457 (706)
                      -.. .  .|-++=  ++   .+..    +.|++.           ..|...|+ ++|+|....
T Consensus       103 ~~~l~~~f~lLsD--~~---~~va----~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~  155 (176)
T 4f82_A          103 DLHTAGKVRMMAD--GS---AAFT----HALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA  155 (176)
T ss_dssp             HTTCTTTSEEEEC--TT---CHHH----HHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             HhCCCCCceEEEc--Cc---hHHH----HHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence            332 1  333321  21   2333    334441           25778888 999997554

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=94.71  E-value=0.006  Score=53.12  Aligned_cols=67  Identities=9%  Similarity=0.141  Sum_probs=47.0

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++++.+        ++.++.|.+        |+.                    
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--------~v~~~~v~~--------~~~--------------------   78 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--------GAVFLKVDV--------DEL--------------------   78 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--------TBCCEECCT--------TTS--------------------
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--------CCEEEEEec--------cch--------------------
Confidence            4899999999999988764  56777666542        355555532        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             ..+.+.|++++.|+++++ ++|+++.
T Consensus        79 -------~~~~~~~~v~~~Pt~~~~-~~g~~~~  103 (130)
T 1wmj_A           79 -------KEVAEKYNVEAMPTFLFI-KDGAEAD  103 (130)
T ss_dssp             -------GGGHHHHTCCSSCCCCBC-TTTTCCB
T ss_pred             -------HHHHHHcCCCccceEEEE-eCCeEEE
Confidence                   124566799999998887 8998764

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=94.57  E-value=0.097  Score=49.17  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             cCc-EEEEEEecCCC--ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          345 RRK-SVLLLVSDLDV--SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       345 ~gK-~VlL~fSal~~--~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .++ .|++.|.|.||  +||..  +..+.+++.+.   -++++.|+-|=+        |+.                   
T Consensus        31 ~~~~~vlVdF~A~wCr~gpCk~--iaPvleela~e---~~~~v~~~KVdv--------De~-------------------   78 (137)
T 2qsi_A           31 HSGKIVVLFFRGDAVRFPEAAD--LAVVLPELINA---FPGRLVAAEVAA--------EAE-------------------   78 (137)
T ss_dssp             TSSSEEEEEECCCTTTCTTHHH--HHHHHHHHHHT---STTTEEEEEECG--------GGH-------------------
T ss_pred             cCCCcEEEEEeCCccCCCchhh--HHhHHHHHHHH---ccCCcEEEEEEC--------CCC-------------------
Confidence            344 99999999999  88875  34444555431   245788888732        221                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                              +.+.++|+++++|+|+++ .+|+++..
T Consensus        79 --------~~la~~ygV~siPTlilF-kdG~~v~~  104 (137)
T 2qsi_A           79 --------RGLMARFGVAVCPSLAVV-QPERTLGV  104 (137)
T ss_dssp             --------HHHHHHHTCCSSSEEEEE-ECCEEEEE
T ss_pred             --------HHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence                    235567799999999999 57877654

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=94.33  E-value=0.066  Score=49.48  Aligned_cols=66  Identities=15%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             CcEEEEEEecCC--CChhH--HHHHHHHHHHHhhcccCCCCCeE--EEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          346 RKSVLLLVSDLD--VSNEE--LFLLEQMYRESRQLSSRTESQYE--VVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       346 gK~VlL~fSal~--~~~~e--~~~L~~iY~elk~~~~~~~~~fE--IVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      .+.++++|++.|  |++|.  .|.|.+++++.        +++.  ++-|-          -|+.               
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~--------~~v~~~~~~Vd----------~d~~---------------   80 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF--------PQFDWQVAVAD----------LEQS---------------   80 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC--------TTSCCEEEEEC----------HHHH---------------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh--------cccceeEEEEE----------CCCC---------------
Confidence            355888999887  77765  35666655543        2355  66652          2221               


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                ..+.+.|+++++|+++++ .+|+++.
T Consensus        81 ----------~~la~~~~V~~iPT~~~f-k~G~~v~  105 (142)
T 2es7_A           81 ----------EAIGDRFNVRRFPATLVF-TDGKLRG  105 (142)
T ss_dssp             ----------HHHHHTTTCCSSSEEEEE-SCC----
T ss_pred             ----------HHHHHhcCCCcCCeEEEE-eCCEEEE
Confidence                      235678899999999999 8998763

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=94.24  E-value=0.045  Score=58.99  Aligned_cols=67  Identities=7%  Similarity=0.057  Sum_probs=48.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.|.||++|..  +.|.+++++.+.     ..++.++.|-.          +..       .          
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-----~~~v~~~~id~----------~~~-------~----------  416 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK-----DPNIVIAKMDA----------TAN-------D----------  416 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT-----CSSEEEEEEET----------TSS-------C----------
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhcc-----CCCEEEEEEEC----------Cch-------h----------
Confidence            3899999999999999876  678888888752     23555555522          110       0          


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                               +.+.|++++.|+++++++.|+
T Consensus       417 ---------~~~~~~v~~~Pt~~~~~~~~~  437 (481)
T 3f8u_A          417 ---------VPSPYEVRGFPTIYFSPANKK  437 (481)
T ss_dssp             ---------CCTTCCCCSSSEEEEECTTCT
T ss_pred             ---------hHhhCCCcccCEEEEEeCCCe
Confidence                     114579999999999998887

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.21  E-value=0.066  Score=55.15  Aligned_cols=74  Identities=11%  Similarity=0.060  Sum_probs=50.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.+.+++++++       +.+.|+.|-+        |.++                   
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~-------~~~~~~~v~~--------d~~~-------------------   79 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD-------GVVQVAAVNC--------DLNK-------------------   79 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TSTT-------------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc-------CCcEEEEEEc--------cCcc-------------------
Confidence            3788999999999999876  56777777764       3488888865        2111                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccH
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA  458 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA  458 (706)
                            -+.+.+.|++++.|+++++++.+.+....+
T Consensus        80 ------~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g  109 (298)
T 3ed3_A           80 ------NKALCAKYDVNGFPTLMVFRPPKIDLSKPI  109 (298)
T ss_dssp             ------THHHHHHTTCCBSSEEEEEECCCC------
T ss_pred             ------CHHHHHhCCCCccceEEEEECCceeecccc
Confidence                  134567789999999999987554444333

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=93.81  E-value=0.16  Score=47.82  Aligned_cols=70  Identities=11%  Similarity=0.079  Sum_probs=48.1

Q ss_pred             cCcEEEEEEecCC--CChhHHHHHHHHHHHHhhcccCCCCC-eEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          345 RRKSVLLLVSDLD--VSNEELFLLEQMYRESRQLSSRTESQ-YEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       345 ~gK~VlL~fSal~--~~~~e~~~L~~iY~elk~~~~~~~~~-fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      .++.|+++|.+.|  |+||..  +..+.+++.+.   -+++ +.|+-|          |-|+                  
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~--iaPvleela~e---~~g~~v~~~KV----------dvDe------------------   79 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSD--NPVMIGELLHE---FPDYTWQVAIA----------DLEQ------------------   79 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTH--HHHHHHHHHTT---CTTSCCEEEEC----------CHHH------------------
T ss_pred             CCCCEEEEEeCCcccCCcHHH--HHhHHHHHHHH---cCCCeEEEEEE----------ECCC------------------
Confidence            4567999999999  788854  55566666531   2345 777766          2222                  


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                             -..|..+|+++++|+|+++ .+|+++.
T Consensus        80 -------~~~lA~~ygV~sIPTlilF-k~G~~v~  105 (140)
T 2qgv_A           80 -------SEAIGDRFGAFRFPATLVF-TGGNYRG  105 (140)
T ss_dssp             -------HHHHHHHHTCCSSSEEEEE-ETTEEEE
T ss_pred             -------CHHHHHHcCCccCCEEEEE-ECCEEEE
Confidence                   2335677899999999999 5888764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=93.77  E-value=1.1  Score=42.90  Aligned_cols=43  Identities=7%  Similarity=-0.153  Sum_probs=29.9

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP  548 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~  548 (706)
                      .++.+.++|.+.+ ..|+++.+.+.+++++. ..+.++.|.-+..
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~  178 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASEN  178 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECCCC
Confidence            4566688888832 34599999999998874 3677777765543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=93.70  E-value=0.051  Score=55.23  Aligned_cols=90  Identities=14%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      +||.|+++|.+.||++|..  +.|.+++.+..        +  |.|+-|        |.+..   .              
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--------~--v~f~kV--------d~d~~---~--------------  176 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP--------M--VKFCKI--------KASNT---G--------------  176 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--------T--SEEEEE--------EHHHH---C--------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--------C--CEEEEE--------eCCcH---H--------------
Confidence            4899999999999999987  45665555431        2  444443        22221   0              


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhhh
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE  483 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~~  483 (706)
                               +.+.|++++.|+++++. +|+++.. -++.....|.   -|+.+.++.+-.+
T Consensus       177 ---------l~~~~~I~~~PTll~~~-~G~~v~~-~vG~~~~~g~---~~~~e~Le~~L~~  223 (245)
T 1a0r_P          177 ---------AGDRFSSDVLPTLLVYK-GGELLSN-FISVTEQLAE---EFFTGDVESFLNE  223 (245)
T ss_dssp             ---------CTTSSCTTTCSEEEEEE-TTEEEEE-ETTGGGGSCT---TCCHHHHHHHHHT
T ss_pred             ---------HHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccccc---cccHHHHHHHHHH
Confidence                     12457999999999886 8988742 2222222221   2666666655544

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=93.50  E-value=0.24  Score=49.28  Aligned_cols=71  Identities=10%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      .++|+.+.+.|.+.||++|..  +.|.+++.+.+.   +...++.++-|-+        +.                  +
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~---~~~~~v~~~~vd~--------~~------------------~  185 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWK---QGNPVILSEAVEA--------YE------------------N  185 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHH---TTCCCEEEEEEET--------TT------------------C
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHccc---ccCCcEEEEEEEC--------cc------------------C
Confidence            467889999999999999875  566666666531   0113566665522        11                  1


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                               ..+.+.|++++.|++++   +|+++
T Consensus       186 ---------~~~~~~~~V~~vPt~~i---~G~~~  207 (243)
T 2hls_A          186 ---------PDIADKYGVMSVPSIAI---NGYLV  207 (243)
T ss_dssp             ---------HHHHHHTTCCSSSEEEE---TTEEE
T ss_pred             ---------HHHHHHcCCeeeCeEEE---CCEEE
Confidence                     12456789999999998   78764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=93.45  E-value=0.22  Score=39.32  Aligned_cols=59  Identities=12%  Similarity=0.017  Sum_probs=40.1

Q ss_pred             EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHH
Q 005245          350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA  427 (706)
Q Consensus       350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~  427 (706)
                      -+.|.+.||++|..  +.|.++.++..       .+++++-|          |                     +   . 
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~-------~~~~~~~v----------~---------------------~---~-   40 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELG-------IDAEFEKI----------K---------------------E---M-   40 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTT-------CCEEEEEE----------C---------------------S---H-
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcC-------CceEEEEe----------c---------------------C---H-
Confidence            35666779999876  45766666553       35666655          2                     0   1 


Q ss_pred             HHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          428 VIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       428 ~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                         .+.+.|++++.|++++   +|+++..
T Consensus        41 ---~~~~~~~v~~~Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           41 ---DQILEAGLTALPGLAV---DGELKIM   63 (77)
T ss_dssp             ---HHHHHHTCSSSSCEEE---TTEEEEC
T ss_pred             ---HHHHHCCCCcCCEEEE---CCEEEEc
Confidence               2345679999999999   8988754

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=93.08  E-value=0.13  Score=50.82  Aligned_cols=91  Identities=11%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      +||.|+++|.+.||++|..  +..+++++.+.    -.++.++-|.+          +    +.                
T Consensus       119 ~~k~vvV~F~a~wC~~C~~--l~p~l~~la~~----~~~v~f~~vd~----------~----~~----------------  162 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDA--LNSSLECLAAE----YPMVKFCKIRA----------S----NT----------------  162 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHH--HHHHHHHHHTT----CTTSEEEEEEH----------H----HH----------------
T ss_pred             CCcEEEEEEECCCCccHHH--HHHHHHHHHHH----CCCeEEEEEEC----------C----cH----------------
Confidence            4689999999999999986  45556666532    12455555532          2    10                


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhh
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWK  482 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~  482 (706)
                            .+.+.|++++.|+++++. +|+++.. -.+.....|.   -|+.+.++.+-.
T Consensus       163 ------~l~~~~~i~~~PTl~~~~-~G~~v~~-~~G~~~~~g~---~~~~~~Le~~L~  209 (217)
T 2trc_P          163 ------GAGDRFSSDVLPTLLVYK-GGELISN-FISVAEQFAE---DFFAADVESFLN  209 (217)
T ss_dssp             ------TCSTTSCGGGCSEEEEEE-TTEEEEE-ETTGGGGSCS---SCCHHHHHHHHH
T ss_pred             ------HHHHHCCCCCCCEEEEEE-CCEEEEE-EeCCcccCcc---cCCHHHHHHHHH
Confidence                  122457899999999995 8988742 2232233342   366666665543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=93.07  E-value=0.11  Score=59.75  Aligned_cols=67  Identities=9%  Similarity=-0.045  Sum_probs=50.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .||.|+++|.+.||++|..  +.|.+++++.+       +++.+++|-+        |+.                    
T Consensus       674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~-------~~~~~~~vd~--------~~~--------------------  718 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIK-------GKVRAGKVDC--------QAY--------------------  718 (780)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------TTC--------------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCceEEEEEC--------CCC--------------------
Confidence            4799999999999999865  67888887774       2577777743        211                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                             ..+.+.|++++.|+++++ ++|+++
T Consensus       719 -------~~~~~~~~v~~~Pt~~~~-~~g~~~  742 (780)
T 3apo_A          719 -------PQTCQKAGIKAYPSVKLY-QYERAK  742 (780)
T ss_dssp             -------HHHHHHTTCCSSSEEEEE-EEETTT
T ss_pred             -------HHHHHhcCCCcCCEEEEE-cCCCcc
Confidence                   125567899999999999 888865

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=93.06  E-value=0.27  Score=44.79  Aligned_cols=70  Identities=14%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.+.+..++         ++..++.|=+        |+                      
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~---------~~v~~~~vdV--------de----------------------   64 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE---------RDMDGYYLIV--------QQ----------------------   64 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH---------HTCCEEEEEG--------GG----------------------
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc---------CCceEEEEEe--------ec----------------------
Confidence            789999999999999876  456655542         2466777732        21                      


Q ss_pred             CCHHHHHHHHHhhCCCC-CcEEEEECCCCceecc
Q 005245          424 IDPAVIRYAKEKWDFRK-KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       424 id~~~~r~ike~~~~~~-iP~LVvL~pqGkv~~~  456 (706)
                       .+++-..|.++|++++ .|.++++ .+|+++-.
T Consensus        65 -~r~~Sn~IA~~~~V~h~sPq~il~-k~G~~v~~   96 (112)
T 3iv4_A           65 -ERDLSDYIAKKTNVKHESPQAFYF-VNGEMVWN   96 (112)
T ss_dssp             -GHHHHHHHHHHHTCCCCSSEEEEE-ETTEEEEE
T ss_pred             -CchhhHHHHHHhCCccCCCeEEEE-ECCEEEEE
Confidence             2356778999999995 9999999 68887743

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=92.84  E-value=0.52  Score=44.48  Aligned_cols=72  Identities=11%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +||.|+|+|.+.||..|....     =.+|-+.+++       +|  |+|-+ |.    ++                   
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-------~f--v~v~~-d~----~~-------------------   87 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-------HF--IFWQV-YH----DS-------------------   87 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-------TE--EEEEE-ES----SS-------------------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-------Ce--EEEEE-ec----CC-------------------
Confidence            389999999999999987631     1334444432       24  44432 21    11                   


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-Cceecc
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQ  456 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~  456 (706)
                            .+. +.+.+.|++.+.|+++++||+ |+.+..
T Consensus        88 ------~~~-~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           88 ------EEG-QRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             ------HHH-HHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             ------HhH-HHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence                  112 234468899999999999999 877643

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=92.43  E-value=0.35  Score=46.46  Aligned_cols=63  Identities=6%  Similarity=-0.004  Sum_probs=42.1

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .++.++++|.+.||++|..  +.|.++.++.        +++.++.|-+        |+.                    
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~--------~~v~~~~vd~--------~~~--------------------  178 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN--------DYITSKVIDA--------SEN--------------------  178 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHC--------TTEEEEEEEG--------GGC--------------------
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHC--------CCeEEEEEEC--------CCC--------------------
Confidence            3556688999999999865  3454444432        2566666643        221                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                             ..+.+.|++++.|++++   +|++
T Consensus       179 -------~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          179 -------QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             -------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             -------HHHHHHcCCcccCEEEE---CCEE
Confidence                   12566789999999999   7774

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=92.04  E-value=0.13  Score=53.17  Aligned_cols=40  Identities=5%  Similarity=0.042  Sum_probs=29.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEE
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWL  389 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwI  389 (706)
                      .+|.|+++|.+.||++|..  +.|.++.++++.     ..++.++.|
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~-----~~~v~~~~v  307 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD-----HENIVIAKM  307 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-----CSSEEEEEE
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhcc-----CCcEEEEEE
Confidence            5899999999999999876  567777777752     234555555

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=91.22  E-value=0.37  Score=41.29  Aligned_cols=68  Identities=13%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      ++|.|.+ |++.||++|..  +..+++++.       ..|++|-|-.        +.+.                     
T Consensus        18 ~~~~vv~-f~a~~C~~C~~--~~~~l~~~~-------~~~~~v~v~~--------~~~~---------------------   58 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNR--VKQLLTQVG-------ASYKVVELDE--------LSDG---------------------   58 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHH--HHHHHHHHT-------CCCEEEEGGG--------STTH---------------------
T ss_pred             cCCCEEE-EECCCChhHHH--HHHHHHHcC-------CCeEEEEccC--------CCCh---------------------
Confidence            4566655 99999999975  334445553       2365544311        1111                     


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                       .+....+.+.+++++.|++ ++  +|+.+.
T Consensus        59 -~~~~~~l~~~~~v~~~Pt~-~~--~g~~v~   85 (116)
T 2e7p_A           59 -SQLQSALAHWTGRGTVPNV-FI--GGKQIG   85 (116)
T ss_dssp             -HHHHHHHHHHHSCCSSCEE-EE--TTEEEE
T ss_pred             -HHHHHHHHHHhCCCCcCEE-EE--CCEEEC
Confidence             1234567788999999999 44  687764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=91.00  E-value=0.069  Score=48.72  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=46.0

Q ss_pred             ecCcEEEEEEecCCCChhHHHH--HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEELFL--LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~~--L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -+.+.++++|.+.||++|....  +.+.|....     ....+.++.|=+        +++.          |      +
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a-----~~~~~~l~~vdv--------~~~~----------~------~   66 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTD-----EGRAAPVQRLQM--------RDPL----------P------P   66 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSH-----HHHHSCEEEEET--------TSCC----------C------T
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhh-----hcccceEEEEEC--------CCCC----------c------h
Confidence            3557899999999999998743  334444321     122477888855        1110          0      1


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      +         +...+++.++|+||+++ +|+.+.
T Consensus        67 ~---------la~~~~V~g~PT~i~f~-~G~ev~   90 (116)
T 3dml_A           67 G---------LELARPVTFTPTFVLMA-GDVESG   90 (116)
T ss_dssp             T---------CBCSSCCCSSSEEEEEE-TTEEEE
T ss_pred             h---------HHHHCCCCCCCEEEEEE-CCEEEe
Confidence            1         11345789999999999 999876

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=90.89  E-value=0.3  Score=54.34  Aligned_cols=69  Identities=9%  Similarity=-0.008  Sum_probs=47.6

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCC----CCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTE----SQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~----~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      +|.|+++|.|.||++|..  |.+.+++++++..   .+    +++.++=|-+        |+.                 
T Consensus        42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~---~g~~~~~~v~f~~VD~--------d~~-----------------   93 (470)
T 3qcp_A           42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVE---HGKDALQIATAAAVNC--------ASE-----------------   93 (470)
T ss_dssp             GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCS---SCSSGGGGCEEEEEET--------TTC-----------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhh---cccccCceEEEEEEEC--------CCC-----------------
Confidence            478999999999999876  5677777776421   11    1355554422        211                 


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                                +.+.+.|++++.|+++++++.|.
T Consensus        94 ----------~~la~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           94 ----------VDLCRKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             ----------HHHHHHTTCCSSCEEEEEEESSC
T ss_pred             ----------HHHHHHcCCCccCeEEEEECCCc
Confidence                      13567789999999999987664

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=90.40  E-value=0.79  Score=40.20  Aligned_cols=59  Identities=12%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             CCCccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhh
Q 005245          496 DPVIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       496 d~~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      ...+.+.  .||.+.|||.+.+ ..|+.+.+.+.+++++.+  ..++++.|+.|...+.+++.+
T Consensus        20 ~~~l~~~--~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~   81 (144)
T 1o73_A           20 EVSLGSL--VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY   81 (144)
T ss_dssp             CBCSGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             cCcHHHh--CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence            3344444  7999999999842 335888899998877644  689999999997766666544

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=90.22  E-value=0.43  Score=51.34  Aligned_cols=65  Identities=14%  Similarity=0.060  Sum_probs=45.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      |+.|+++|.+.||++|..  +.+.++.++++.       .  |.++-+ |.     |++                     
T Consensus        21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~-------~--v~~~~v-d~-----~~~---------------------   64 (481)
T 3f8u_A           21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-------I--VPLAKV-DC-----TAN---------------------   64 (481)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-------T--CCEEEE-ET-----TTC---------------------
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC-------c--eEEEEE-EC-----CCC---------------------
Confidence            489999999999999876  567777777751       2  444433 21     111                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                            +.+.++|++++.|+++++ .+|+.
T Consensus        65 ------~~l~~~~~v~~~Ptl~~~-~~g~~   87 (481)
T 3f8u_A           65 ------TNTCNKYGVSGYPTLKIF-RDGEE   87 (481)
T ss_dssp             ------HHHHHHTTCCEESEEEEE-ETTEE
T ss_pred             ------HHHHHhcCCCCCCEEEEE-eCCce
Confidence                  235678899999999999 56754

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=89.85  E-value=0.43  Score=42.16  Aligned_cols=52  Identities=15%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|||.+.+ ..|+.+.+.+.+++++.+  ..++++.|+.|...+.+++.+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYY   81 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHH
Confidence            7999999999932 335888999999887654  589999999997777766654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=89.81  E-value=0.45  Score=42.26  Aligned_cols=52  Identities=12%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|||.+.+ ..|+.+.+.+.+++++.+  ..+++++|+.|...+.+++.+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYF   81 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHH
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHH
Confidence            7999999999942 335889999999987644  589999999997777766654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=89.45  E-value=0.02  Score=50.32  Aligned_cols=35  Identities=6%  Similarity=-0.032  Sum_probs=26.6

Q ss_pred             eeecceecCcEEEEEEecCCCChhHHHHHHHHHHHHh
Q 005245          338 KVSIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESR  374 (706)
Q Consensus       338 kV~Is~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk  374 (706)
                      ++.++...||.+.+.|.+.||++|..  +..+++++.
T Consensus         4 ~~~la~~~~k~~vV~F~A~WC~~C~~--~~p~~~~~a   38 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAYWCPHCQD--QKELFGAAF   38 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECTTCHHHHH--HHHHHGGGG
T ss_pred             hhHHHHhcCCCEEEEEECCCCHHHHH--HHHHHHHHH
Confidence            45566777899999999999999976  345566654

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=89.41  E-value=0.63  Score=41.10  Aligned_cols=53  Identities=6%  Similarity=-0.111  Sum_probs=40.6

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRIIS  557 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~e~v~~~~~  557 (706)
                      .||.+.|+|.+.+ ..|+...+.+.+++++. +..++++.|+.|...+.+++.++
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~   85 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVK   85 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHH
Confidence            8999999999832 33578888888887763 35799999999977777666553

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=89.27  E-value=0.5  Score=49.73  Aligned_cols=74  Identities=15%  Similarity=0.195  Sum_probs=49.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.+.++.+++++.. ...++  |+++-+ |       .+                   .
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~-~~~~~--v~~~~V-d-------~~-------------------~   70 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEF-PNENQ--VVFARV-D-------CD-------------------Q   70 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC----CC--EEEEEE-E-------TT-------------------T
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhc-CCCCc--eEEEEE-E-------CC-------------------c
Confidence            5799999999999999876  57888888886310 00223  444443 2       11                   0


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                        +    +.+.++|++++.|+++++ .+|+++.
T Consensus        71 --~----~~l~~~~~v~~~Pt~~~f-~~G~~~~   96 (382)
T 2r2j_A           71 --H----SDIAQRYRISKYPTLKLF-RNGMMMK   96 (382)
T ss_dssp             --C----HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             --c----HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence              1    236677899999999987 5787653

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=88.74  E-value=0.95  Score=49.09  Aligned_cols=66  Identities=8%  Similarity=-0.082  Sum_probs=46.5

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.+.++.++++      +.++.++-|-+        |++                    
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~------~~~v~~~~vd~--------~~~--------------------   75 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV------EKNITLAQIDC--------TEN--------------------   75 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTT------TTTCEEEEEET--------TTC--------------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhc------cCCeEEEEEEC--------CCC--------------------
Confidence            4799999999999999876  56666666664      12455555522        111                    


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                             +.+.++|++++.|+++++.. |+
T Consensus        76 -------~~l~~~~~v~~~Pt~~~~~~-g~   97 (504)
T 2b5e_A           76 -------QDLCMEHNIPGFPSLKIFKN-SD   97 (504)
T ss_dssp             -------HHHHHHTTCCSSSEEEEEET-TC
T ss_pred             -------HHHHHhcCCCcCCEEEEEeC-Cc
Confidence                   23677889999999999964 55

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=88.26  E-value=0.98  Score=41.63  Aligned_cols=58  Identities=10%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             CccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhhh
Q 005245          498 VIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRIIS  557 (706)
Q Consensus       498 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~--~~~E~v~Vgkdn~~e~v~~~~~  557 (706)
                      .+.+.  .||.+.|||.+.+ ..|+++.+.+.+++++.+  ..++++.|+.|...+.+++.++
T Consensus        42 ~l~~~--~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~  102 (165)
T 3s9f_A           42 DMDSL--SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYA  102 (165)
T ss_dssp             CSGGG--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHT
T ss_pred             cHHHc--CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHH
Confidence            34443  7999999999843 446999999999987643  4899999999988777766553

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=88.01  E-value=3.3  Score=41.05  Aligned_cols=101  Identities=9%  Similarity=0.027  Sum_probs=52.9

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh---------hhHHHHH-HhhcCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE---------AKEHKFE-ALQYMMP  414 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D---------~de~~Fe-~~~~~MP  414 (706)
                      .+|.+...|++.|||.|...  .+...++.+    . ++..|+|+++- ...+.+.         .++.+|- .+...+.
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~--~~~l~~~~~----~-g~v~v~~~~~p-~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  167 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQF--WQQARPWVD----S-GKVQLRTLLVG-VIKPESPATAAAILASKDPAKTWQQYEASGG  167 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHH--HHHHHHHHH----T-TSEEEEEEECC-CSSTTHHHHHHHHHHSSSHHHHHHHHHHTTT
T ss_pred             CCCeEEEEEECCCChhHHHH--HHHHHHHHh----C-CcEEEEEEECC-cCCCcHHHHHHHHHHccCHHHHHHHHHHHhc
Confidence            57899999999999999863  222222321    1 35778887751 0001111         1233332 2221110


Q ss_pred             ceeeccCCCCCHHH------HHHHHHhhCCCCCcEEEEECCCCce
Q 005245          415 WFSVHHPSAIDPAV------IRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       415 WyAVpf~~~id~~~------~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                      =-.+.-....+.+.      ...+-+.+++++.|++++.|.+|++
T Consensus       168 ~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          168 KLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             cCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence            00000000011222      2234578999999999999989974

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=87.83  E-value=2  Score=41.63  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             ecCcEEEEEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEE--ecccCCCCcC---------h-hhHHHHHHh
Q 005245          344 LRRKSVLLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWL--PIVDRSTPWT---------E-AKEHKFEAL  409 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwI--piVd~s~~w~---------D-~de~~Fe~~  409 (706)
                      -.||.+.+.|++.|||.|...  .|.++.+        .  +..|+++  |+... .+++         . +..+.|.+.
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~--------~--~v~v~~~~~p~~~~-~~~s~~~a~a~~~a~d~~~~~~~~  152 (216)
T 1eej_A           84 PQEKHVITVFTDITCGYCHKLHEQMADYNA--------L--GITVRYLAFPRQGL-DSDAEKEMKAIWCAKDKNKAFDDV  152 (216)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHH--------T--TEEEEEEECCTTCS-SSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHh--------C--CcEEEEEECCccCC-CchHHHHHHHHHhccCHHHHHHHH
Confidence            357899999999999999863  3544322        1  3667666  43110 0100         0 112334443


Q ss_pred             hcCCCceeeccCC-CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          410 QYMMPWFSVHHPS-AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       410 ~~~MPWyAVpf~~-~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                      ...-+   ++++. .........+.+.+++++.|++++.  +|+.+
T Consensus       153 ~~~~~---~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~~~  193 (216)
T 1eej_A          153 MAGKS---VAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGTLV  193 (216)
T ss_dssp             HTTCC---CCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSCEE
T ss_pred             HhCCC---CChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCeEe
Confidence            33222   22211 1123444567789999999999664  46543

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=87.36  E-value=0.1  Score=45.49  Aligned_cols=18  Identities=17%  Similarity=0.053  Sum_probs=16.3

Q ss_pred             CcccccCChhhHHHhhhh
Q 005245          466 GSVAFPFSVAREEALWKE  483 (706)
Q Consensus       466 G~~AFPFT~~r~eeL~~~  483 (706)
                      |++|||||.+|+++|.++
T Consensus         1 ~~~a~pfte~~~~~~~~~   18 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAK   18 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHH
T ss_pred             CCcccccCHHHHHHHHHH
Confidence            889999999999999765

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=85.95  E-value=0.98  Score=43.63  Aligned_cols=66  Identities=9%  Similarity=0.082  Sum_probs=43.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|++-|+|.||+||..  |+|.++=++..       +...|+=|   |       -|+                .|+ 
T Consensus        41 ~k~VVVdF~A~WCgPCk~m~PvleelA~e~~-------~~v~f~kV---D-------VDe----------------~~e-   86 (160)
T 2av4_A           41 ERLVCIRFGHDYDPDCMKMDELLYKVADDIK-------NFCVIYLV---D-------ITE----------------VPD-   86 (160)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEE---E-------TTT----------------CCT-
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CCcEEEEE---E-------CCC----------------CHH-
Confidence            578999999999999987  45555544442       23444444   2       221                011 


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                              +.+.|+++.+|+++++- +|+.+
T Consensus        87 --------~a~~y~V~siPT~~fFk-~G~~v  108 (160)
T 2av4_A           87 --------FNTMYELYDPVSVMFFY-RNKHM  108 (160)
T ss_dssp             --------TTTTTTCCSSEEEEEEE-TTEEE
T ss_pred             --------HHHHcCCCCCCEEEEEE-CCEEE
Confidence                    34567999999999884 66665

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=85.93  E-value=1.5  Score=45.29  Aligned_cols=71  Identities=15%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             cCcEEEEEEecCCCChhHH--HH---HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeec
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FL---LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH  419 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~---L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVp  419 (706)
                      ++|.|++.|.|.||+ |..  |.   +..+|+++.+.-  .+.+  |.++-+ |-     |++                 
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~--~~~~--v~~~~V-d~-----~~~-----------------   78 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVL--EHKD--IGFVMV-DA-----KKE-----------------   78 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHG--GGSS--EEEEEE-ET-----TTT-----------------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHH--hhcC--cEEEEE-eC-----CCC-----------------
Confidence            478999999999998 532  44   334454443211  1113  444443 21     111                 


Q ss_pred             cCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          420 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       420 f~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                                +.+.++|++++.|+++++ .+|++.
T Consensus        79 ----------~~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           79 ----------AKLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             ----------HHHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             ----------HHHHHhcCCCccceEEEE-ECCcEE
Confidence                      136678899999999999 678744

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=85.32  E-value=1.5  Score=38.09  Aligned_cols=50  Identities=14%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             CceEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDLEWV---RKFTALMGAVARAA--GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~--~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|||.+  .||   +...+.+.+++++.  +..++++.|+.|...+.+++..
T Consensus        32 ~gk~vll~F~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~   86 (148)
T 3fkf_A           32 RNRYLLLNFWA--SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAI   86 (148)
T ss_dssp             TTSEEEEEEEC--GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHH
T ss_pred             CCcEEEEEEEC--CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHH
Confidence            89999999998  676   89999999998764  3459999999998777766654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=85.26  E-value=1.9  Score=45.33  Aligned_cols=72  Identities=13%  Similarity=0.185  Sum_probs=46.9

Q ss_pred             cCcEEEEEEecCCCChhHH-HHHH---HHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          345 RRKSVLLLVSDLDVSNEEL-FLLE---QMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~-~~L~---~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      .++.|++.|.|.||++|.. +.|.   .+|+++.+.-  .+.  .|.+.-+ |       .++.                
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~--~~~--~v~~~~V-d-------~~~~----------------   80 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL--EDK--GVGFGLV-D-------SEKD----------------   80 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHH--TTT--TEEEEEE-E-------TTTT----------------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHh--hcC--CceEEEE-e-------Cccc----------------
Confidence            4789999999999988755 4343   4666665321  122  3555543 3       2211                


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                               +-|.++|++++.|+++++. +|+.+
T Consensus        81 ---------~~l~~~~~V~~~PTl~~f~-~G~~~  104 (367)
T 3us3_A           81 ---------AAVAKKLGLTEEDSIYVFK-EDEVI  104 (367)
T ss_dssp             ---------HHHHHHHTCCSTTEEEEEE-TTEEE
T ss_pred             ---------HHHHHHcCCCcCceEEEEE-CCcEE
Confidence                     1367788999999999997 57654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=85.06  E-value=0.76  Score=41.21  Aligned_cols=88  Identities=9%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      ++.|.++|.+.||++|..  +..++++|.+..    .+..  |+-+        |.|+.                     
T Consensus        23 ~~~vvv~F~a~wc~~C~~--~~p~l~~la~~~----~~v~--f~kv--------d~d~~---------------------   65 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLL--VNQHLSLLARKF----PETK--FVKA--------IVNSC---------------------   65 (118)
T ss_dssp             TCEEEEEEECTTSHHHHH--HHHHHHHHHHHC----TTSE--EEEE--------EGGGT---------------------
T ss_pred             CCeEEEEEeCCCChHHHH--HHHHHHHHHHHC----CCCE--EEEE--------EhHHh---------------------
Confidence            458999999999999986  455566665321    2344  4443        22320                     


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecccHHHHHHHhCcccccCChhhHHHhhh
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWK  482 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AFPFT~~r~eeL~~  482 (706)
                             .+.|+++++|+++++- +|+.+..- .+. ...|-+  -||.+.+|..-.
T Consensus        66 -------~~~~~v~~~PT~~~fk-~G~~v~~~-~G~-~~~gg~--~~~~~~le~~L~  110 (118)
T 3evi_A           66 -------IQHYHDNCLPTIFVYK-NGQIEAKF-IGI-IECGGI--NLKLEELEWKLA  110 (118)
T ss_dssp             -------STTCCGGGCSEEEEEE-TTEEEEEE-EST-TTTTCS--SCCHHHHHHHHH
T ss_pred             -------HHHCCCCCCCEEEEEE-CCEEEEEE-eCh-hhhCCC--CCCHHHHHHHHH
Confidence                   0356889999999994 78777542 111 122322  588887776543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=83.92  E-value=1.2  Score=38.80  Aligned_cols=52  Identities=10%  Similarity=-0.009  Sum_probs=40.5

Q ss_pred             CceEEEEEccCChhHH---HHHHHHHHHHHHHhC-CceeEEEeccCCchhhhhhhhhh
Q 005245          505 EQKHICLYGGEDLEWV---RKFTALMGAVARAAG-IALEMLYVGKSNPKEKARRIIST  558 (706)
Q Consensus       505 egK~I~LYgg~d~~Wi---r~FT~~l~~I~~~~~-~~~E~v~Vgkdn~~e~v~~~~~~  558 (706)
                      .||.+.|||.+  .||   +...+.+.++++..+ ..++++.|+.|...+.+++.++.
T Consensus        30 ~gk~vll~f~~--~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~   85 (148)
T 3hcz_A           30 QAKYTILFFWD--SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRS   85 (148)
T ss_dssp             CCSEEEEEEEC--GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHH
T ss_pred             CCCEEEEEEEC--CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHH
Confidence            89999999998  676   788888888877643 35999999999777766665543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=83.89  E-value=0.57  Score=45.85  Aligned_cols=45  Identities=13%  Similarity=-0.025  Sum_probs=35.0

Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      -+..+||.+|++-..    ..+.+.++|++++.|+||+++++|++...|
T Consensus       178 d~~~~~~i~v~~~~~----~~~~l~~~f~v~~~Pslvl~~~~g~~~~~~  222 (244)
T 3q6o_A          178 DLSQHKGVAVRRVLN----TEANVVRKFGVTDFPSCYLLFRNGSVSRVP  222 (244)
T ss_dssp             HTTTCTTEEEEEEET----TCHHHHHHHTCCCSSEEEEEETTSCEEECC
T ss_pred             HhccCCceEEEEEeC----chHHHHHHcCCCCCCeEEEEeCCCCeEeec
Confidence            345678888877441    125566778999999999999999999887

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=83.87  E-value=3.7  Score=39.80  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             cCcEEEEEEecCCCChhHHH--HHHHHHHHHhhcccCCCCCeEEEEE--eccc-CCC-------CcC-hhhHHHHHHhhc
Q 005245          345 RRKSVLLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWL--PIVD-RST-------PWT-EAKEHKFEALQY  411 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~--~L~~iY~elk~~~~~~~~~fEIVwI--piVd-~s~-------~w~-D~de~~Fe~~~~  411 (706)
                      .+|.+...|++.|||.|...  .|.+    +.+    .  +.+|+|+  |+.. ++.       -|. ....+.|.+.+.
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~----~~~----~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~  154 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKE----YND----L--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK  154 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHH----HHH----T--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHH----HHh----C--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHc
Confidence            47899999999999999864  3444    331    1  3666665  5411 000       000 011233444443


Q ss_pred             CCCceeeccCC-CCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          412 MMPWFSVHHPS-AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       412 ~MPWyAVpf~~-~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                      .-+   ++... .........+-+.+++++.|++++  .+|+.+
T Consensus       155 ~~~---~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~~~  193 (211)
T 1t3b_A          155 GNL---PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI  193 (211)
T ss_dssp             TCC---CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred             CCC---CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCEEe
Confidence            321   22211 011223345668899999999998  568744

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=83.83  E-value=2.5  Score=38.81  Aligned_cols=30  Identities=3%  Similarity=-0.082  Sum_probs=23.7

Q ss_pred             eecCcEEEEEEecCCCChhHHH--HHHHHHHH
Q 005245          343 VLRRKSVLLLVSDLDVSNEELF--LLEQMYRE  372 (706)
Q Consensus       343 ~L~gK~VlL~fSal~~~~~e~~--~L~~iY~e  372 (706)
                      .-.+|.+...|++.|||.|...  .|.+++++
T Consensus        19 ~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~   50 (175)
T 3gyk_A           19 NPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDA   50 (175)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCccHHHHHHHHHHHHHh
Confidence            4568899999999999998874  56666554

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=83.58  E-value=1.7  Score=38.31  Aligned_cols=54  Identities=9%  Similarity=0.022  Sum_probs=41.9

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHH---HHHH-hCCceeEEEeccCCchhhhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGA---VARA-AGIALEMLYVGKSNPKEKARRIIST  558 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~---I~~~-~~~~~E~v~Vgkdn~~e~v~~~~~~  558 (706)
                      .||.+.|+|-+.+ ..|+...+.+.+   ++++ .+..++++.|+.|...+.+++.++.
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~   88 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRND   88 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGG
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHh
Confidence            7899999998832 345888888888   7665 3678999999999888877765543

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=83.56  E-value=1.5  Score=38.99  Aligned_cols=52  Identities=17%  Similarity=0.094  Sum_probs=39.9

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|+|.+.+ ..|+...+.+.+++++. +..++++.|+.|...+.+++.+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHH
Confidence            7999999998832 33588889999987764 3469999999997666665544

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=82.62  E-value=2.8  Score=34.34  Aligned_cols=47  Identities=6%  Similarity=-0.077  Sum_probs=38.5

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEK  551 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~  551 (706)
                      .+|.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|.-++..+-
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   65 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPST   65 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHH
Confidence            8899999999954 5679999999999888666789999988765443

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=82.56  E-value=2.4  Score=37.35  Aligned_cols=52  Identities=10%  Similarity=-0.000  Sum_probs=39.7

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAG-IALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~-~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|||.+.+ ..|+.+.+.+.++++... ..++++.|+.|...+.+++.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~   80 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFL   80 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHH
Confidence            7999999998742 446888999998877643 359999999997666665544

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=82.50  E-value=2.2  Score=35.18  Aligned_cols=51  Identities=8%  Similarity=-0.059  Sum_probs=40.1

Q ss_pred             ccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhh
Q 005245          501 TWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEK  551 (706)
Q Consensus       501 ~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~  551 (706)
                      +.+..||.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|..+...+-
T Consensus        16 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   67 (109)
T 3tco_A           16 EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI   67 (109)
T ss_dssp             HHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHH
T ss_pred             HHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHH
Confidence            33568999999999954 6679999999999887666788888888755433

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=82.08  E-value=1.5  Score=39.60  Aligned_cols=52  Identities=4%  Similarity=-0.095  Sum_probs=39.1

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|+|.+.+ ..|+...+.+.+++++. +..++++.|+.|..++.+++..
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~   87 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSA   87 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHH
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHH
Confidence            7999999999832 33477788888887763 3469999999998777665543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=81.55  E-value=2.2  Score=38.04  Aligned_cols=52  Identities=8%  Similarity=-0.053  Sum_probs=39.8

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~-~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|+|.+.+ ..|+.+.+.+.++++.. +..++++.|+.|...+.+++.+
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~   86 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYM   86 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHH
Confidence            7999999998832 44588888888887764 3459999999987666666544

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=81.10  E-value=2.6  Score=34.59  Aligned_cols=47  Identities=6%  Similarity=-0.012  Sum_probs=37.4

Q ss_pred             ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCch
Q 005245          503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPK  549 (706)
Q Consensus       503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~  549 (706)
                      ++.||.+.+||.+++ .+|+.+.+.+.++++..+..+.++.|.-+...
T Consensus        15 ~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~   62 (109)
T 2yzu_A           15 LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP   62 (109)
T ss_dssp             HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH
T ss_pred             hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCH
Confidence            457899999999853 55699999999998876667888888877543

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=80.59  E-value=3  Score=34.37  Aligned_cols=47  Identities=9%  Similarity=-0.024  Sum_probs=37.0

Q ss_pred             ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCch
Q 005245          503 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPK  549 (706)
Q Consensus       503 i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~  549 (706)
                      ++.||.+.++|.+++ .+|+.+.+.+.++++..+..+.++.|.-+...
T Consensus        14 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~   61 (105)
T 1nsw_A           14 IQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP   61 (105)
T ss_dssp             HSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCH
T ss_pred             HhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCH
Confidence            457899999999854 56699999999998876656888888877543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=80.40  E-value=2  Score=46.57  Aligned_cols=30  Identities=13%  Similarity=0.019  Sum_probs=24.9

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHh
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESR  374 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk  374 (706)
                      .+|.|+++|.+.||++|..  +.+.++.++.+
T Consensus       375 ~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~  406 (504)
T 2b5e_A          375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYA  406 (504)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhHHHHhHHHHHHHHHhh
Confidence            4899999999999999876  56777777765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=80.30  E-value=2.9  Score=37.04  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=41.7

Q ss_pred             CceEEEEEccCCh-hH--HHHHHHHHHHHHHHh--CCceeEEEeccCCchhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EW--VRKFTALMGAVARAA--GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       505 egK~I~LYgg~d~-~W--ir~FT~~l~~I~~~~--~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .||.+.|+|.+.+ ..  |+...+.+.+++++.  +..++++.|+.|..++.+++.+
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~   88 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAI   88 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHH
Confidence            7999999998843 45  788888999987764  4569999999998777776655

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=80.22  E-value=3  Score=35.46  Aligned_cols=52  Identities=12%  Similarity=0.063  Sum_probs=40.5

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIIS  557 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~~~~  557 (706)
                      .||.+.|+|.+.+ ..|+.+.+.+.+++++.+ .++++.|+.+...+.+++..+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHH
Confidence            7899999998732 445888899999887766 899999998876666666543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=80.14  E-value=4.1  Score=33.42  Aligned_cols=46  Identities=4%  Similarity=-0.029  Sum_probs=36.5

Q ss_pred             cCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCch
Q 005245          504 MEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPK  549 (706)
Q Consensus       504 ~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~  549 (706)
                      ..||.+.++|.+++ .+|+.+.+.+.+++++.+..+.++.|.-++..
T Consensus        18 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   64 (107)
T 2i4a_A           18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP   64 (107)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCC
T ss_pred             hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCH
Confidence            47899999999854 56799999999998876557888888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	706
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.77
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.67
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.57
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.89
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.89
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.78
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.72
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.67
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.62
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.53
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.53
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.46
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.22
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.21
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.08
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.88
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.78
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.74
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	97.71
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.64
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.57
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.57
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.45
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.31
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.22
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.21
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	97.11
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.06
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	96.98
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.69
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.67
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.63
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.59
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.58
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.42
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	96.41
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.39
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	96.39
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.27
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	96.21
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.12
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	96.07
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.06
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.96
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	95.72
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.71
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	95.68
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.59
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.43
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	95.33
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.24
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	95.14
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	95.0
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	94.79
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	94.57
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.56
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	94.33
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	94.2
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	94.18
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	94.11
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	93.87
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	91.88
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	91.68
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	91.63
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	90.37
d1wjka_	100	Thioredoxin-like structure containing protein C330	89.29
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	88.14
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	86.21
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	85.57
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	85.55
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	81.63
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	81.32
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	80.95

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.77  E-value=1.5e-18  Score=160.02  Aligned_cols=128  Identities=16%  Similarity=0.335  Sum_probs=111.2

Q ss_pred             CccccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHH
Q 005245          328 LPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHK  405 (706)
Q Consensus       328 ~pl~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~  405 (706)
                      ..+.+|+ +.+|++++|+||.|+|+|+|.||++|..  +.|.++|++.+     ...+||||.|+.        |++++.
T Consensus        11 ~~~l~~~-~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~-----~~~~~~vi~vs~--------D~~~~~   76 (144)
T d1i5ga_          11 TNVLKGA-AADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA-----EKKNFEVMLISW--------DESAED   76 (144)
T ss_dssp             SEEEETT-EEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEEC--------CSSHHH
T ss_pred             hhhccCC-CCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHH-----hccCcEEEEEec--------cccHHH
Confidence            3456665 7789999999999999999999988755  68999999997     345799999986        677889


Q ss_pred             HHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-CceecccHHHHHHH-hCcccccC
Q 005245          406 FEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQNALHMMWI-WGSVAFPF  472 (706)
Q Consensus       406 Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~nA~~mI~~-wG~~AFPF  472 (706)
                      +.++..+++|+.+++.+   ..+...|.+.|+++++|++++||++ |+|++.+|++++.+ -+..+||+
T Consensus        77 ~~~~~~~~~~~~~~~~d---~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw  142 (144)
T d1i5ga_          77 FKDYYAKMPWLALPFED---RKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW  142 (144)
T ss_dssp             HHHHHTTCSSEECCTTC---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             HHHHHHhCCCCceeeEC---hHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence            99999999999999964   5667788999999999999999996 99999999999876 45678997

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.67  E-value=1.9e-16  Score=144.61  Aligned_cols=122  Identities=19%  Similarity=0.339  Sum_probs=103.3

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      .+.+|++++|+||.|+|+|.|.||++|..  +.|.++|++..     .+.+|+||.|+.        |.+++.+.++...
T Consensus        17 ~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~-----~~~~~~vi~is~--------d~~~~~~~~~~~~   83 (144)
T d1o73a_          17 KSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-----VAKNFEVVLISW--------DENESDFHDYYGK   83 (144)
T ss_dssp             TTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEEC--------CSSHHHHHHHHTT
T ss_pred             CCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHh-----hccCeEEEEEec--------chhHHHHHHHHHh
Confidence            34479999999999999999999999754  78999999985     346899999986        6677888899999


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-CceecccHHH-HHHHhCcccccC
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQNALH-MMWIWGSVAFPF  472 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~nA~~-mI~~wG~~AFPF  472 (706)
                      ++|+.+||..   ......+.+.|+++++|++++||++ |+++..+++. ++.+....+|||
T Consensus        84 ~~~~~~~~~~---~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw  142 (144)
T d1o73a_          84 MPWLALPFDQ---RSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             CSSEECCTTC---HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             ccccceeeec---cchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCC
Confidence            9999999954   4555678889999999999999998 9999999855 455566788998

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.57  E-value=5.6e-15  Score=133.41  Aligned_cols=125  Identities=20%  Similarity=0.298  Sum_probs=105.9

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .+|.+|+++.|+||.|+|+|.+.||++|..  +.|.++|+++.     ...++++|+|+.        |++.+.+..++.
T Consensus        14 ~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~-----~~~~~~~v~is~--------d~~~~~~~~~~~   80 (144)
T d1o8xa_          14 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-----ESKNFEVVFCTW--------DEEEDGFAGYFA   80 (144)
T ss_dssp             ETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEEC--------CCSHHHHHHHHT
T ss_pred             CCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcc-----cccccccccccc--------cccHHHHHHHHh
Confidence            357799999999999999999999988765  67999999996     345899999986        667789999999


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-CceecccHHHHH-HHhCcccccCCh
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQNALHMM-WIWGSVAFPFSV  474 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~nA~~mI-~~wG~~AFPFT~  474 (706)
                      .++|+.+|+..   ......+.+.|+++++|+.+++|++ |+|+..+++..+ .......||+..
T Consensus        81 ~~~~~~~~~~~---~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~  142 (144)
T d1o8xa_          81 KMPWLAVPFAQ---SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  142 (144)
T ss_dssp             TCSSEECCGGG---HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             hccccceeeec---ccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence            99999999953   3455678899999999999999998 899999987655 556677788854

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.89  E-value=4.8e-09  Score=97.55  Aligned_cols=113  Identities=18%  Similarity=0.157  Sum_probs=85.4

Q ss_pred             ccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +...+|++|.+++++||.|+|+|.+.||++|..  +.|.++|++.+      ...++||+|++ |..   +.+..++|-+
T Consensus        41 l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~------~~~~~vv~vs~-d~~---~~~~~~~~~~  110 (176)
T d1jfua_          41 FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS------GPNFEVVAINI-DTR---DPEKPKTFLK  110 (176)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHC------BTTEEEEEEEC-CCS---CTTHHHHHHH
T ss_pred             EECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccc------ccccccccccc-ccc---chhhhhhhHh
Confidence            556788899999999999999999999988755  67999998875      46799999986 310   1233444533


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      - ...+|+.+....  +....+.+...+++.++|+.++||++|+++..
T Consensus       111 ~-~~~~~~~~~~d~--~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~  155 (176)
T d1jfua_         111 E-ANLTRLGYFNDQ--KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  155 (176)
T ss_dssp             H-TTCCTTCCEECT--TCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             h-hCCcceeeeecc--hhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence            2 345666555543  34677778888899999999999999999743

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.89  E-value=7.8e-10  Score=98.97  Aligned_cols=113  Identities=12%  Similarity=0.045  Sum_probs=85.4

Q ss_pred             ccCCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      +.+.+|+.|+++.++||.|+|+|.+.||++|.  ++.|.+.|++.+.      .+++++-|+......++   +...+..
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~------~~~~~i~v~~~~~~~~~---~~~~~~~   78 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF------SSANLITVASPGFLHEK---KDGDFQK   78 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG------TTSEEEEEECTTSTTCC---CTTHHHH
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc------CCcEEEEEeeeeccccc---chhhhhh
Confidence            45667889999999999999999999999976  4789999998863      46888888764332233   3445666


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ++....++..|.-.  |.  ...+.+.|+++++|+.+++|++|+++..
T Consensus        79 ~~~~~~~~~~~~~~--D~--~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          79 WYAGLNYPKLPVVT--DN--GGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             HHTTSCCTTSCEEE--CT--TCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             hhhhcCCccccccc--cc--chHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            66777776665522  22  2346678899999999999999998754

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=3.1e-09  Score=94.85  Aligned_cols=101  Identities=10%  Similarity=0.041  Sum_probs=72.8

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ  410 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~  410 (706)
                      -.+|+.+++++++||.|+|+|.+.|||+|..  +.|.+.|++-        .+..+|+|+.-+     +...-+.|-+-+
T Consensus        11 ~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~--------~~v~~v~v~~~~-----~~~~~~~~~~~~   77 (134)
T d1lu4a_          11 TLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN--------PAVTFVGIATRA-----DVGAMQSFVSKY   77 (134)
T ss_dssp             BTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC--------TTSEEEEEECSS-----CHHHHHHHHHHH
T ss_pred             CCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh--------cccccccccccc-----chhhhhhhhhhh
Confidence            4578899999999999999999999999765  6788887653        358899997521     233444554433


Q ss_pred             cCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCcee
Q 005245          411 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       411 ~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~  454 (706)
                       ..+|-.+.-++       ..+.+.|++.+.|+++++|++|++.
T Consensus        78 -~~~~p~~~d~~-------~~~~~~~~v~~~P~~~lid~~G~i~  113 (134)
T d1lu4a_          78 -NLNFTNLNDAD-------GVIWARYNVPWQPAFVFYRADGTST  113 (134)
T ss_dssp             -TCCSEEEECTT-------SHHHHHTTCCSSSEEEEECTTSCEE
T ss_pred             -ccccceeeCch-------HHHHHHcCCCcCCEEEEEeCCCeEE
Confidence             34443332221       2356678999999999999999875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.72  E-value=1.2e-08  Score=91.59  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             ccCCCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      .++..+..+.++.++||.|+|+|.+.||++|..  +.|.    ++.     ...+++++.|...+     +..+.+.|..
T Consensus        16 ~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~----~l~-----~~~~~~~~~i~~~~-----~~~~~~~~~~   81 (144)
T d1knga_          16 ADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLT----ELG-----KDKRFQLVGINYKD-----AADNARRFLG   81 (144)
T ss_dssp             ETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHH----HHT-----TCTTSEEEEEEESC-----CHHHHHHHHH
T ss_pred             ccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhh----hhh-----hccCceeEEEEeee-----chHHHHHHHH
Confidence            345566789999999999999999999999964  3444    443     23358888887633     2444445533


Q ss_pred             hhcCCCceeecc-CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceeccc
Q 005245          409 LQYMMPWFSVHH-PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       409 ~~~~MPWyAVpf-~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n  457 (706)
                      - ..++|+.+-+ ++       ..+.+.|++.++|+.++||++|+++...
T Consensus        82 ~-~~~~~~~~~~d~~-------~~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          82 R-YGNPFGRVGVDAN-------GRASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             H-HCCCCSEEEEETT-------SHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             H-cCCcccccccccc-------chhhhhcCccccceEEEEcCCCeEEEEE
Confidence            2 2444443333 22       1356788999999999999999998654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=1.4e-08  Score=89.79  Aligned_cols=102  Identities=14%  Similarity=0.095  Sum_probs=73.3

Q ss_pred             CCCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .+|+.|.+++++||.|+|.|-+.||++|..  +.|.++|++-+        +..+|.|+..|     +.++.+.|-.. .
T Consensus        13 ~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~--------~~~~v~v~~~d-----~~~~~~~~~~~-~   78 (134)
T d1zzoa1          13 LDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--------EVTFVGVAGLD-----QVPAMQEFVNK-Y   78 (134)
T ss_dssp             TTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--------TSEEEEEECSS-----CHHHHHHHHHH-T
T ss_pred             CCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc--------ccccccccccc-----cchhHHHHHHh-c
Confidence            467899999999999999999999999765  68999888653        35567776533     23344445442 2


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                      ..+++.+-+.    ..  ..+.+.|++++.|..+++|++|++..
T Consensus        79 ~~~~~~~l~D----~~--~~~~~~~~v~~~P~~~iiD~~G~i~~  116 (134)
T d1zzoa1          79 PVKTFTQLAD----TD--GSVWANFGVTQQPAYAFVDPHGNVDV  116 (134)
T ss_dssp             TCTTSEEEEC----TT--CHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             CCcceeEEee----cc--chHHHhcCCCccCeEEEECCCCeEEE
Confidence            4444444442    22  14567789999999999999999854

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=3.1e-08  Score=88.05  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcC
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM  412 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~  412 (706)
                      +|..+++++++||.++++|.+.||++|..  +.|.++|++...      .++.||.|+.-+     +..+-++|-+ ...
T Consensus        14 ~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~------~~~~~v~i~~~~-----~~~~~~~~~~-~~~   81 (137)
T d1st9a_          14 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS------QGVEIVAVNVGE-----SKIAVHNFMK-SYG   81 (137)
T ss_dssp             TSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG------GTEEEEEEEESC-----CHHHHHHHHH-HTT
T ss_pred             CcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc------cccccccccccc-----hhhhHHHHHH-HcC
Confidence            67799999999999999999999988765  679999999863      369999998622     2223334432 124


Q ss_pred             CCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          413 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       413 MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .||..+--++   .    .+.+.|++.+.|.++++|++|+++..
T Consensus        82 ~~~~~~~d~~---~----~~~~~~~v~~~P~~~liD~~G~i~~~  118 (137)
T d1st9a_          82 VNFPVVLDTD---R----QVLDAYDVSPLPTTFLINPEGKVVKV  118 (137)
T ss_dssp             CCSCEEEETT---S----HHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             CCcccccccc---c----hhhhhhhccccceEEEECCCCEEEEE
Confidence            5655543322   2    35667899999999999999999864

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=2.6e-07  Score=82.74  Aligned_cols=113  Identities=10%  Similarity=0.082  Sum_probs=77.2

Q ss_pred             CCccccCC----CCceeecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh
Q 005245          327 QLPLVECP----TKRKVSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE  400 (706)
Q Consensus       327 ~~pl~dg~----~~~kV~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D  400 (706)
                      +.|-|.|.    +|..+..+.+.||.|+|+|-+.||++|..  +.|.++|++.+       ++.++|.|.+-+...   +
T Consensus         6 ~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~-------~~~~~i~v~~~~~~~---~   75 (143)
T d2b5xa1           6 PMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ-------DQLNVVAVHMPRSED---D   75 (143)
T ss_dssp             BCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTSEEEEEECCCSTT---T
T ss_pred             cCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhh-------ccccceeEEeecccc---c
Confidence            34555433    36667788899999999999999988755  67999999875       248889987632211   2


Q ss_pred             hhHHHHHHh--hcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          401 AKEHKFEAL--QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       401 ~de~~Fe~~--~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      .+......+  ...+||..+--+       ...+.+.|++.+.|+.+++|++|+++..
T Consensus        76 ~~~~~~~~~~~~~~~~~p~~~D~-------~~~~~~~~~v~~~P~~~~id~~G~i~~~  126 (143)
T d2b5xa1          76 LDPGKIKETAAEHDITQPIFVDS-------DHALTDAFENEYVPAYYVFDKTGQLRHF  126 (143)
T ss_dssp             SSHHHHHHHHHHTTCCSCEEECS-------SCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             cchhhhhhHHHhhccCccccccC-------ccchHHHcCCCcCCEEEEECCCCEEEEE
Confidence            222233322  235666544322       2245667899999999999999999865

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=2.1e-07  Score=88.24  Aligned_cols=113  Identities=9%  Similarity=0.077  Sum_probs=79.1

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCC-CcCh-hhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRST-PWTE-AKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~-~w~D-~de~~Fe~  408 (706)
                      ..+|+.+.+++++||.|+|.|-+.|||+|.  .+.|.++|++.+       +++.+|.|..-|... .... +.-+.|..
T Consensus        19 d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~-------~~v~~v~i~snd~~~~~~~~~e~~~~~~~   91 (187)
T d2cvba1          19 DPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR-------GKVAFVGINANDYEKYPEDAPEKMAAFAE   91 (187)
T ss_dssp             CTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT-------TTEEEEEEECCCTTTCGGGSHHHHHHHHH
T ss_pred             cCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcc-------ccceeeeeeccccccccccchHHHHHHHH
Confidence            478899999999999999999999999876  578999999885       247777775422111 1111 12223333


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecccHHH
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALH  460 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~  460 (706)
                       ...++|..+.-++       ..+.+.|++.+.|..+++|++|+++-.=+++
T Consensus        92 -~~~~~~p~l~D~~-------~~~~~~~~v~~~P~~~liD~~G~i~y~G~id  135 (187)
T d2cvba1          92 -EHGIFFPYLLDET-------QEVAKAYRALRTPEVFLFDERRLLRYHGRVN  135 (187)
T ss_dssp             -HHTCCSCEEECSS-------SHHHHHTTCCEESEEEEECTTCBEEEEECSS
T ss_pred             -HhCCcceeeechh-------hhhcccccccceeeEEEEcCCCeEEEEeeec
Confidence             3446666554432       2445678999999999999999998654443

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.3e-07  Score=83.88  Aligned_cols=100  Identities=19%  Similarity=0.116  Sum_probs=67.9

Q ss_pred             CCceeeccee-cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVL-RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L-~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      .|+.+..+.| +||.|+|.|-|.||++|..  |.|.++++          .++.||.+..-+     +......|-.- .
T Consensus         8 ~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----------~~~~vi~i~~~~-----~~~~~~~~~~~-~   71 (136)
T d1z5ye1           8 PGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----------QGIRVVGMNYKD-----DRQKAISWLKE-L   71 (136)
T ss_dssp             TTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----------TTCCEEEEEESC-----CHHHHHHHHHH-H
T ss_pred             CCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----------hhhhhccccccc-----chhhhHHHHHH-c
Confidence            4778899998 8999999999999999854  66766543          247888887621     22233333222 3


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ..+|+.+.+..  +.    .+.+.|++.++|+.+++|++|+++..
T Consensus        72 ~~~~~~~~~d~--~~----~~~~~~~v~~~P~~~liD~~G~i~~~  110 (136)
T d1z5ye1          72 GNPYALSLFDG--DG----MLGLDLGVYGAPETFLIDGNGIIRYR  110 (136)
T ss_dssp             CCCCSEEEEES--SC----HHHHHHTCCSBSEEEEECTTSCEEEE
T ss_pred             CCccceeeccc--ch----hHHHhcccCCcceEEEEcCCCEEEEE
Confidence            33443333322  11    35566899999999999999999854

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.4e-06  Score=73.88  Aligned_cols=111  Identities=10%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             CCCceeecceecCcEEEEEEecCCCCh-h--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH--H
Q 005245          334 PTKRKVSIDVLRRKSVLLLVSDLDVSN-E--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE--A  408 (706)
Q Consensus       334 ~~~~kV~Is~L~gK~VlL~fSal~~~~-~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe--~  408 (706)
                      .+|+.|++++|+||.|+|+|-..|||. |  ....|.++++++....  ....+.++.++.-+     .....+...  .
T Consensus         8 ~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~   80 (160)
T d1wp0a1           8 HTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSIT--TLPDLTPLFISIDP-----ERDTKEAIANYV   80 (160)
T ss_dssp             TTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCT--TSCCEEEEEEESCT-----TTCCHHHHHHHH
T ss_pred             CCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhccc--ccccccccccccCC-----CcccHHHHHHHH
Confidence            578899999999999999999999864 4  4568999999997532  33455666666522     112222222  3


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCC---------------CcEEEEECCCCceec
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK---------------KPILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~---------------iP~LVvL~pqGkv~~  455 (706)
                      .....+|..++-.    ......+...|.+-.               .|.++++||+|+++.
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~  138 (160)
T d1wp0a1          81 KEFSPKLVGLTGT----REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLD  138 (160)
T ss_dssp             HTTCTTCEEEECC----HHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEE
T ss_pred             hhcCCCcccccCc----hHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEE
Confidence            3456677766653    344555666666432               368899999999984

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=6.1e-06  Score=76.06  Aligned_cols=113  Identities=14%  Similarity=0.227  Sum_probs=76.8

Q ss_pred             cCCCCceeecceecCcEEEEEEecCCC---ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChh--hHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVSDLDV---SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEA--KEHKF  406 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fSal~~---~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~--de~~F  406 (706)
                      -..+|+.|++++++||.|+|+|-..||   |+..+..|.++|+++++    .+.++++|+|++ |   ++.|.  ..+.|
T Consensus        17 ~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~----~~~~v~~v~isi-D---p~~Dtp~~l~~y   88 (172)
T d1xzoa1          17 QNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA----ENIDVRIISFSV-D---PENDKPKQLKKF   88 (172)
T ss_dssp             ECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH----TTCCCEEEEEES-C---TTTCCHHHHHHH
T ss_pred             EcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc----cccccccccccc-c---cccchHHHHHHH
Confidence            467899999999999999999998886   45677889999999974    467899999986 5   34332  23455


Q ss_pred             HHhhcC--CCceeeccCCCCCHHHHHHHHHhhCC-CC----------CcEEEEECCCCcee
Q 005245          407 EALQYM--MPWFSVHHPSAIDPAVIRYAKEKWDF-RK----------KPILVVLDPQGRVV  454 (706)
Q Consensus       407 e~~~~~--MPWyAVpf~~~id~~~~r~ike~~~~-~~----------iP~LVvL~pqGkv~  454 (706)
                      .+.+.-  ..|-.+--++  .....++....|.. .+          -|.++++||+|+++
T Consensus        89 ~~~~~~~~~~w~~lt~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~  147 (172)
T d1xzoa1          89 AANYPLSFDNWDFLTGYS--QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVL  147 (172)
T ss_dssp             HTTSCCCGGGEEEEBCSC--HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEE
T ss_pred             HHHhccccccceeeccch--HHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEE
Confidence            543321  2355443222  12334444444433 23          36799999999986

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.08  E-value=2.6e-06  Score=78.39  Aligned_cols=116  Identities=16%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             CCCcccc------CCCCceeecceecCcEEEEEE-ecCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCC
Q 005245          326 DQLPLVE------CPTKRKVSIDVLRRKSVLLLV-SDLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRST  396 (706)
Q Consensus       326 ~~~pl~d------g~~~~kV~Is~L~gK~VlL~f-Sal~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~  396 (706)
                      +.-|-|.      +.+|++|++++++||.|.|+| .+.||+.|  +++.|.+.|+++++      ..++|+-|+. |   
T Consensus         7 ~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~------~~~~v~~is~-d---   76 (167)
T d1e2ya_           7 HPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE------INTEVISCSC-D---   76 (167)
T ss_dssp             SBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT------TTEEEEEEES-S---
T ss_pred             CCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc------CceEEEeecC-C---
Confidence            3446664      457889999999999999998 58996665  45689999999973      4599999985 3   


Q ss_pred             CcChhhHHHHH-HhhcCCCceeeccCCCCCHHHHHHHHHhhCC----CC--CcEEEEECCCCceec
Q 005245          397 PWTEAKEHKFE-ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDF----RK--KPILVVLDPQGRVVN  455 (706)
Q Consensus       397 ~w~D~de~~Fe-~~~~~MPWyAVpf~~~id~~~~r~ike~~~~----~~--iP~LVvL~pqGkv~~  455 (706)
                        +.....+|. ......+=+.+||+-+.|.  .+.+.+.|++    .+  .|+..|||++|++..
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~l~d~--~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~  138 (167)
T d1e2ya_          77 --SEYSHLQWTSVDRKKGGLGPMAIPMLADK--TKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQ  138 (167)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCCCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             --cHHhHHHHHhhHHHhcccccccccccccc--hhHHHHHcCCCcccCCCceeEEEEECCCCEEEE
Confidence              234444553 3333333345566543332  2333344555    23  468899999999953

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=1.1e-05  Score=74.29  Aligned_cols=104  Identities=10%  Similarity=0.051  Sum_probs=71.6

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      |.+++.+.+++++||.|.|+|- +.|||.|-.  ..|.+.|+++++      .+.+||.|+. |     +....+.|..-
T Consensus        31 ~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~------~g~~vv~is~-d-----~~~~~~~~~~~   98 (169)
T d2bmxa1          31 GDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED------RDAQILGVSI-D-----SEFAHFQWRAQ   98 (169)
T ss_dssp             GGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHHH
T ss_pred             cccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccc------cCcceeeccc-c-----chhhhhhhccc
Confidence            4455789999999999999885 888666544  679999999984      3489999986 2     24445566543


Q ss_pred             hcC---CCceeeccCCCCCHHHHHHHHHhhCC-----CCCcEEEEECCCCceec
Q 005245          410 QYM---MPWFSVHHPSAIDPAVIRYAKEKWDF-----RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~---MPWyAVpf~~~id~~~~r~ike~~~~-----~~iP~LVvL~pqGkv~~  455 (706)
                      +..   .|..-+.-++   .    .+.+.|++     ...|+.+|+|++|++..
T Consensus        99 ~~~~~~~~f~ll~D~~---~----~v~~~ygv~~~~~~~~r~~fvID~~G~I~~  145 (169)
T d2bmxa1          99 HNDLKTLPFPMLSDIK---R----ELSQAAGVLNADGVADRVTFIVDPNNEIQF  145 (169)
T ss_dssp             CTTGGGCCSCEEECTT---S----HHHHHHTCBCTTSSBCEEEEEECTTSBEEE
T ss_pred             ccccccceEEEEeccH---H----HHHHHcCCCccCCccceeEEEEcCCCEEEE
Confidence            332   3333333222   2    33344666     56799999999999964

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=9.6e-05  Score=64.55  Aligned_cols=114  Identities=8%  Similarity=0.002  Sum_probs=71.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCCCChhHH---HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEEL---FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~~~~~e~---~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      -.+|+.|+.++++||.|+++|-..+||++..   ..+...+....+.   ....+.+++++....   ..+.+.......
T Consensus        13 d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~   86 (169)
T d2b7ka1          13 DMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSK---YGITLQPLFITCDPA---RDSPAVLKEYLS   86 (169)
T ss_dssp             ETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH---HCCCCEEEEEESCTT---TCCHHHHHHHHT
T ss_pred             eCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhcccc---ccccceeeeeccccc---cCchhhhhhhhc
Confidence            4678899999999999999999999876433   3466666665532   345678888876432   112222233333


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHH----------------HhhCCCCCcEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAK----------------EKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ik----------------e~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                      ...-+|..+....    .......                .-+.+...|.++++||+|+++..
T Consensus        87 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          87 DFHPSILGLTGTF----DEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             TSCTTCEEEECCH----HHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             cccccccccccch----hhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence            4445666555532    2222222                22346778999999999999865

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.74  E-value=1.8e-05  Score=73.38  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=71.0

Q ss_pred             ccCCCCceeecceecCcEEEEEEecC-CCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          331 VECPTKRKVSIDVLRRKSVLLLVSDL-DVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       331 ~dg~~~~kV~Is~L~gK~VlL~fSal-~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      .+|.++++|++++++||.|.|+|=.. |||.|  +++.|.+.|+++++      .+++||-||. |     +....+.|-
T Consensus        16 ~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~------~g~~vv~IS~-D-----~~~~~~~~~   83 (166)
T d1we0a1          16 QSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK------LGVEVYSVST-D-----THFVHKAWH   83 (166)
T ss_dssp             CSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHH
T ss_pred             cCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc------cceEEEeccc-c-----cHHHHHHHh
Confidence            34677889999999999888887644 76654  55789999999974      4699999986 3     133344554


Q ss_pred             Hhh---cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          408 ALQ---YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       408 ~~~---~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                      +-+   ..+|...+.-++   .+    +.+.|++.      ..|...|+||+|++..
T Consensus        84 ~~~~~~~~~~fpll~D~~---~~----v~~~ygv~~~~~~~~~r~tfvID~~G~I~~  133 (166)
T d1we0a1          84 ENSPAVGSIEYIMIGDPS---QT----ISRQFDVLNEETGLADRGTFIIDPDGVIQA  133 (166)
T ss_dssp             HSCHHHHTCCSEEEECTT---CH----HHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhhhhhcccccccccCcc---cH----HHHHhCCCccccCcccceEEEECCCCcEEE
Confidence            322   235544444432   23    33444552      3577899999999954

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.71  E-value=2.2e-05  Score=72.04  Aligned_cols=105  Identities=13%  Similarity=0.099  Sum_probs=74.5

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      .|..++.|++++++||.|.|||= +.|||.|-.  ..+.+.|++.++      .+.+|+-||. |     +....+.|-+
T Consensus        12 ~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~------~~~~vigIS~-d-----~~~~~~~~~~   79 (158)
T d1zyea1          12 VSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD------VNCEVVAVSV-D-----SHFSHLAWIN   79 (158)
T ss_dssp             CSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH------TTEEEEEEES-S-----CHHHHHHHHT
T ss_pred             eCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc------CCceEEeccC-c-----CHHHHHHHHh
Confidence            35578899999999999999998 667666654  579999999974      4689999986 4     2556677754


Q ss_pred             hh------cCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          409 LQ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~------~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                      -.      ..+|+.-+--++       +.+.+.|++.      .+|...|+||+|++..
T Consensus        80 ~~~~~~~~~~~~f~llsD~~-------~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~  131 (158)
T d1zyea1          80 TPRKNGGLGHMNIALLSDLT-------KQISRDYGVLLEGPGLALRGLFIIDPNGVIKH  131 (158)
T ss_dssp             SCGGGTCCCSCSSEEEECTT-------SHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhHhhccccccccccccccc-------cHHHHHHHhccccCCccccEEEEECCCCEEEE
Confidence            32      245555554433       1244455654      3567899999999964

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00022  Score=67.50  Aligned_cols=115  Identities=12%  Similarity=0.060  Sum_probs=79.4

Q ss_pred             CCceeecceecCcEEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccC--CCCcChhhHHHHHHhh
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDR--STPWTEAKEHKFEALQ  410 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~--s~~w~D~de~~Fe~~~  410 (706)
                      .|+.|+++.++||.|++-+-|.||+.+.  .+.|+++|++-+.      ..|+|+-+|.-+-  ..+.++++-..|-.+.
T Consensus        13 ~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~------~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~   86 (184)
T d2f8aa1          13 GGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP------RGLVVLGFPCNQFGHQENAKNEEILNSLKYV   86 (184)
T ss_dssp             CSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG------GTEEEEEEECCCSTTTTCSCHHHHHHHHHHT
T ss_pred             CCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc------cceeEEEeeccccccccccchhhhhhhhhee
Confidence            4678999999999999999999998764  6799999999974      4599999998542  3445566666665443


Q ss_pred             cCCCceeeccC--CCC------CHHHHHHHHHhhC--------CCCCc-----------------EEEEECCCCceec
Q 005245          411 YMMPWFSVHHP--SAI------DPAVIRYAKEKWD--------FRKKP-----------------ILVVLDPQGRVVN  455 (706)
Q Consensus       411 ~~MPWyAVpf~--~~i------d~~~~r~ike~~~--------~~~iP-----------------~LVvL~pqGkv~~  455 (706)
                      ..--=|.+.||  .++      ..++-++|++...        ..+.|                 +=.++|++|+++.
T Consensus        87 ~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~  164 (184)
T d2f8aa1          87 RPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLR  164 (184)
T ss_dssp             SSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEE
T ss_pred             ccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEE
Confidence            21112223331  111      2367889987643        23344                 4479999999975

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.57  E-value=6.3e-05  Score=71.73  Aligned_cols=109  Identities=14%  Similarity=0.068  Sum_probs=74.1

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH-
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~-  408 (706)
                      +.+++.|++++++||.|.|||= +.||+.|-.  .-|.+.|++.++      .+.+|+.||. |+     -...+.|.+ 
T Consensus        20 d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~------~g~~VlgIS~-Ds-----~~s~~~~~~~   87 (194)
T d1uula_          20 NGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD------IGCEVLACSM-DS-----EYSHLAWTSI   87 (194)
T ss_dssp             TSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-SC-----HHHHHHHHHS
T ss_pred             CCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc------CceEEEEEec-Cc-----hhhhhhhhhh
Confidence            3578899999999999999988 777777655  569999999973      4699999985 32     334555543 


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCC------CCCcEEEEECCCCceec
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDF------RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~------~~iP~LVvL~pqGkv~~  455 (706)
                      ......=..++||-+.|.  .+.+.+.|++      -..|...|+||+|++..
T Consensus        88 ~~~~~~~~~l~fpllsD~--~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~  138 (194)
T d1uula_          88 ERKRGGLGQMNIPILADK--TKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQ  138 (194)
T ss_dssp             CGGGTCCCSCSSCEEECT--TCHHHHHHTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             hhhhccccCCCcceeeCC--cchHHHHcCCeeccCCceEEEEEEECCCCeEEE
Confidence            333333344555433332  2234444555      23578999999999864

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.57  E-value=6.1e-05  Score=67.59  Aligned_cols=105  Identities=12%  Similarity=0.128  Sum_probs=71.8

Q ss_pred             CCCCceeeccee--cCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVL--RRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L--~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      +.+|+.++++++  +||.|.|+|= +.|||.|..  +.|.+.|++++      +...++|-|+. |     +.+..++|.
T Consensus        15 ~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~------~~~~~vv~is~-d-----~~~~~~~~~   82 (160)
T d2cx4a1          15 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLE------KANAEVLAISV-D-----SPWCLKKFK   82 (160)
T ss_dssp             CTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTS------TTCCEEEEEES-S-----CHHHHHHHH
T ss_pred             CCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccc------ccccccccccc-c-----chhhhhhhc
Confidence            567889999998  7998887775 788888755  56777777775      34588999875 2     244455554


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCC----------CCCcEEEEECCCCceeccc
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDF----------RKKPILVVLDPQGRVVNQN  457 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~----------~~iP~LVvL~pqGkv~~~n  457 (706)
                      +- ..+||.-+..++   ..+    .+.|++          ...|..+|+|++|++....
T Consensus        83 ~~-~~~~~~~l~D~~---~~~----~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~  134 (160)
T d2cx4a1          83 DE-NRLAFNLLSDYN---REV----IKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW  134 (160)
T ss_dssp             HH-HTCSSEEEECTT---SHH----HHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE
T ss_pred             cc-ceeeEEEeecCC---cch----HHHcCccccccccccccceeeEEEEcCCCEEEEEE
Confidence            43 467776665543   233    344555          3468899999999998543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=7.1e-05  Score=64.01  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             cceecCcEEEEEEecCCCChhHHH--H---HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEELF--L---LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW  415 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~~--~---L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW  415 (706)
                      +...+||.|+|.|.+.||++|...  .   +.++++.++        ++..+-+.+ +     .+.              
T Consensus        17 l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--------~~~~~~~~~-~-----~~~--------------   68 (117)
T d2fwha1          17 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--------DTVLLQANV-T-----AND--------------   68 (117)
T ss_dssp             HHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--------TSEEEEEEC-T-----TCC--------------
T ss_pred             HHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--------ceEEEeccc-c-----cch--------------
Confidence            345579999999999999999862  2   245555442        355554433 1     111              


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                 ..-+.+.+.|++++.|+++++||+|+++.
T Consensus        69 -----------~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~   97 (117)
T d2fwha1          69 -----------AQDVALLKHLNVLGLPTILFFDGQGQEHP   97 (117)
T ss_dssp             -----------HHHHHHHHHTTCCSSSEEEEECTTSCBCG
T ss_pred             -----------hHHHHHHhhhehhhceEEEEEeCCCcEEe
Confidence                       22344667899999999999999998765

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.00034  Score=62.49  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=68.4

Q ss_pred             CCCCceeecceecCc--EEEEEEecCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          333 CPTKRKVSIDVLRRK--SVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       333 g~~~~kV~Is~L~gK--~VlL~fSal~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      ..+|++|++++++||  .|+++|.+.|||.|.  ++.|.+.|++.+      ..+++|+-|+. |     +....++|-+
T Consensus        15 d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~------~~~~~vi~vs~-d-----~~~~~~~~~~   82 (153)
T d1xvwa1          15 DQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE------NDDSAALAISV-G-----PPPTHKIWAT   82 (153)
T ss_dssp             CTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTS------SSSEEEEEEES-C-----CHHHHHHHHH
T ss_pred             CCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhc------ccccccccccc-h-----hhhHHHHHhh
Confidence            467889999999996  444456688988755  467999998875      45699999975 4     3455566754


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCC----CC--cEEEEECCCCceec
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----KK--PILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~----~i--P~LVvL~pqGkv~~  455 (706)
                      -. .+||..+--.+. +.+    +.+.|++-    ++  |+.+|||++|++..
T Consensus        83 ~~-~~~~~~l~~~~~-~~~----~~~~ygv~~~~~g~~~r~tfvID~~G~I~~  129 (153)
T d1xvwa1          83 QS-GFTFPLLSDFWP-HGA----VSQAYGVFNEQAGIANRGTFVVDRSGIIRF  129 (153)
T ss_dssp             HH-TCCSCEEECTTT-TTH----HHHHTTCEETTTTEECSEEEEECTTSBEEE
T ss_pred             hh-ccceeEEecccc-cch----hHHHhhhhhhccCceeeeEEEECCCCEEEE
Confidence            33 455544322111 122    33455552    32  46889999999963

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.22  E-value=0.00024  Score=65.73  Aligned_cols=110  Identities=13%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             CCccccCCCC--ceeecceecCc-EEEEEEe-cCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcCh
Q 005245          327 QLPLVECPTK--RKVSIDVLRRK-SVLLLVS-DLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE  400 (706)
Q Consensus       327 ~~pl~dg~~~--~kV~Is~L~gK-~VlL~fS-al~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D  400 (706)
                      .+|-.+|.+.  ..+++++++|| .|.|+|= +.|||.  .++..+.+.|+++++      .+.+||-|+. |     +.
T Consensus        11 ~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~------~g~~Vvgis~-d-----~~   78 (170)
T d1zofa1          11 KAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE------KGFNVIGVSI-D-----SE   78 (170)
T ss_dssp             EEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH------TTEEEEEEES-S-----CH
T ss_pred             CcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc------CCeeEecccc-c-----ch
Confidence            3555666554  57999999997 5777764 777555  456789999999974      3599999986 3     25


Q ss_pred             hhHHHHHHhhc------CCCceeeccCCCCCHHHHHHHHHhhCCC-----CCcEEEEECCCCceec
Q 005245          401 AKEHKFEALQY------MMPWFSVHHPSAIDPAVIRYAKEKWDFR-----KKPILVVLDPQGRVVN  455 (706)
Q Consensus       401 ~de~~Fe~~~~------~MPWyAVpf~~~id~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~  455 (706)
                      ..+..|.+...      .+|+..+--++       +.+.+.|++.     ..|...|+||+|++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~-------~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~  137 (170)
T d1zofa1          79 QVHFAWKNTPVEKGGIGQVSFPMVADIT-------KSISRDYDVLFEEAIALRGAFLIDKNMKVRH  137 (170)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECTT-------SHHHHHTTCEETTTEECEEEEEEETTTEEEE
T ss_pred             hhHHHHHhhhhhcccccCcccccccccc-------cHHHHHcCCCccccceeEEEEEEcCCCeEEE
Confidence            66677765442      34444443332       2344555652     4578999999999964

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.21  E-value=0.00019  Score=68.06  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             CCceeecceecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          335 TKRKVSIDVLRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       335 ~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      ...+|++++++||.|.|||=-.+ +|.|  |+..+.+.|++.++      .+.+|+.||. |+     -...+.|-+-..
T Consensus        19 ~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~------~~~~v~gIS~-Ds-----~~sh~~f~~~~~   86 (186)
T d1n8ja_          19 EFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK------LGVDVYSVST-DT-----HFTHKAWHSSSE   86 (186)
T ss_dssp             EEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH------TTEEEEEEES-SC-----HHHHHHHHHHCT
T ss_pred             eeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc------ccEEEEeccc-cC-----HHHHHHHhcccc
Confidence            44588999999999999998554 4445  44679999999974      4689999986 52     455677876544


Q ss_pred             ---CCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          412 ---MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ---~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                         .+|...+--+       -+.+.+.|++.      ..|...|+||+|+|..
T Consensus        87 ~~~~~~fpllsD~-------~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~  132 (186)
T d1n8ja_          87 TIAKIKYAMIGDP-------TGALTRNFDNMREDEGLADRATFVVDPQGIIQA  132 (186)
T ss_dssp             TGGGCCSEEEECT-------TSHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             ccccccccccccH-------HHHHHHHhCCCcccCCcceeeEEEECchheEEE
Confidence               3444333332       23445555652      2578999999999853

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.00073  Score=61.81  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-C--ChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-V--SNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~--~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      +.+|+.|++++++||.|.|+|=..| |  |..++..|.+.|++++        +.+++.||. |     +-...+.|..-
T Consensus        29 d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--------~~~vi~iS~-d-----~~~~~~~~~~~   94 (164)
T d1q98a_          29 GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--------NTIVLCISA-D-----LPFAQARFCGA   94 (164)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--------TEEEEEEES-S-----CHHHHTTCTTT
T ss_pred             CCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--------cceEEeecC-C-----cHHHHHHHHHH
Confidence            5678899999999999999888554 3  3355577888888874        378999986 4     13345566544


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHH---HhhCCCCC--cEEEEECCCCceecc
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAK---EKWDFRKK--PILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ik---e~~~~~~i--P~LVvL~pqGkv~~~  456 (706)
                      ..-.++..+.-..  +....+..-   +...+.|.  |...|+|++|++...
T Consensus        95 ~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          95 EGIENAKTVSTFR--NHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             TTCTTEEEEECTT--CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             hCCcccccccccc--chhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence            4444444443321  222222221   11122333  789999999999853

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00013  Score=64.03  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=51.7

Q ss_pred             eecCcEEEEEEecC-------CCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCc
Q 005245          343 VLRRKSVLLLVSDL-------DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW  415 (706)
Q Consensus       343 ~L~gK~VlL~fSal-------~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPW  415 (706)
                      +-+||.|+++|.|.       ||++|..  +..+++++.+.   ..+++.++.|-+ |      |.     .++..    
T Consensus        18 ~~~gk~v~v~F~a~~~~~g~sWC~pCk~--~~P~~~~l~~~---~~~~~~~~~vdv-~------~~-----~~~~d----   76 (119)
T d1woua_          18 QHNGKTIFAYFTGSKDAGGKSWCPDCVQ--AEPVVREGLKH---ISEGCVFIYCQV-G------EK-----PYWKD----   76 (119)
T ss_dssp             TTTTSEEEEEEECCBCTTCCBSCHHHHH--HHHHHHHHGGG---CCTTEEEEEEEC-C------CH-----HHHHC----
T ss_pred             HcCCCEEEEEEEecCCCCCCCCChhHHH--HHHHHHHHHHh---cCCceEEEEEEC-C------CC-----cccch----
Confidence            34789999999885       9999976  33344444322   235688888864 1      11     11111    


Q ss_pred             eeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          416 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                                  .-..+.+.|+++++|++++++..+++..
T Consensus        77 ------------~~~~l~~~~~V~~iPT~i~~~~g~~l~~  104 (119)
T d1woua_          77 ------------PNNDFRKNLKVTAVPTLLKYGTPQKLVE  104 (119)
T ss_dssp             ------------TTCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             ------------hhhhHHHhCCeEEEEEEEEEECCeEEee
Confidence                        0123556789999999999987666654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00054  Score=62.64  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCCCceeecceecCcEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      ..+|+.|++++++||.|.|+|= +.|||.|  +++.|.+.|.+.        .+.++|.|+. |     +....++|...
T Consensus        31 ~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~--------~~~~vv~Is~-d-----~~~~~~~~~~~   96 (164)
T d1qxha_          31 AKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI--------DNTVVLCISA-D-----LPFAQSRFCGA   96 (164)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS--------TTEEEEEEES-S-----CHHHHTTCCSS
T ss_pred             CCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh--------ccceeeeEEc-C-----CHHHHHHHHHH
Confidence            4688999999999998888664 5677665  446677766542        3689999986 3     23344555433


Q ss_pred             hc-CCCceeeccCCCCCHHHHHHHHHhhCC-------CC--CcEEEEECCCCceecc
Q 005245          410 QY-MMPWFSVHHPSAIDPAVIRYAKEKWDF-------RK--KPILVVLDPQGRVVNQ  456 (706)
Q Consensus       410 ~~-~MPWyAVpf~~~id~~~~r~ike~~~~-------~~--iP~LVvL~pqGkv~~~  456 (706)
                      .. .-|-++..+++   ..    +.+.|++       .+  .|...|+|++|+++..
T Consensus        97 ~~~~~~~~~~~d~~---~~----~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~  146 (164)
T d1qxha_          97 EGLNNVITLSTFRN---AE----FLQAYGVAIADGPLKGLAARAVVVIDENDNVIFS  146 (164)
T ss_dssp             TTCTTEEEEECTTC---HH----HHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             hCCCcceeeccccc---hh----hHHhcCeEeecCcccCcccCEEEEEcCCCEEEEE
Confidence            22 33344444442   22    2334444       22  3789999999999853

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.69  E-value=0.0015  Score=55.93  Aligned_cols=71  Identities=7%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|+|++||.+.||++|..  |.|.++..+.+         ..+.+|-+ +    . +.+                     
T Consensus        26 ~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~---------~~v~~v~~-~----~-~~~---------------------   69 (115)
T d1zmaa1          26 KETATFFIGRKTCPYCRKFAGTLSGVVAETK---------AHIYFINS-E----E-PSQ---------------------   69 (115)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---------CCCEEEET-T----C-GGG---------------------
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHHHHHHhh---------hhhhhhee-e----c-ccc---------------------
Confidence            788999999999999876  45666655543         34667754 1    1 111                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                        ....+.+.++|++++.|+|+++. +|+++.
T Consensus        70 --~~~~~~~~~~~~V~~~PTli~~~-~gk~~~   98 (115)
T d1zmaa1          70 --LNDLQAFRSRYGIPTVPGFVHIT-DGQINV   98 (115)
T ss_dssp             --HHHHHHHHHHHTCCSSCEEEEEE-TTEEEE
T ss_pred             --cccccccccccccccccEEEEEE-CCEEEE
Confidence              23344567788999999999996 787663

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.67  E-value=0.0025  Score=53.44  Aligned_cols=69  Identities=13%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|+++|.+.||++|...  ...++++...   ...++.++.|-+        |..                       
T Consensus        19 ~kpvlv~F~a~wC~~C~~~--~p~~~~~~~~---~~~~~~~~~vd~--------d~~-----------------------   62 (107)
T d1dbya_          19 SVPVLVDFWAPWCGPCRII--APVVDEIAGE---YKDKLKCVKLNT--------DES-----------------------   62 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHH--HHHHHHHHHH---TTTTCEEEEEET--------TTC-----------------------
T ss_pred             CCcEEEEEECCCCCCcccc--ChHHHHHHHh---hcccceEEEEec--------ccc-----------------------
Confidence            6889999999999998763  3444454321   345688888743        211                       


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                          ..|.+.|++++.|+++++. +|+.+.
T Consensus        63 ----~~l~~~~~V~~~Pt~~~~~-~G~~v~   87 (107)
T d1dbya_          63 ----PNVASEYGIRSIPTIMVFK-GGKKCE   87 (107)
T ss_dssp             ----HHHHHHHTCCSSCEEEEES-SSSEEE
T ss_pred             ----hhHHHHhcccceEEEEEEE-CCeEEE
Confidence                1255678999999999996 788774

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.002  Score=54.61  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             eecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeecc
Q 005245          343 VLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH  420 (706)
Q Consensus       343 ~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf  420 (706)
                      .-.||.|+++|.+.||++|..  +.+.+++++.+       +...++-|-+        |+.                  
T Consensus        22 ~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~-------~~~~~~~i~~--------d~~------------------   68 (111)
T d1xwaa_          22 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFA-------DNVVVLKVDV--------DEC------------------   68 (111)
T ss_dssp             HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTEEEEEEET--------TTC------------------
T ss_pred             hcCCCEEEEEEECCcccCccccchhHHHHhhhcc-------cceEEEEEEe--------ecC------------------
Confidence            346899999999999999876  45666666553       3355555522        211                  


Q ss_pred             CCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          421 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       421 ~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                           .    -+.+.|++++.|+++++ .+|+.+..
T Consensus        69 -----~----~l~~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          69 -----E----DIAMEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             -----H----HHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----c----chhhcCCCccccEEEEE-ECCEEEEE
Confidence                 1    24567899999999999 68887753

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0019  Score=61.35  Aligned_cols=110  Identities=14%  Similarity=0.050  Sum_probs=73.3

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      .+.++..|++++++||.|.|||= +.|++.|..  .-|.+.|++.++      .+.+|+=||. |     +-...+.|.+
T Consensus        20 ~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~------~g~~vigIS~-D-----~~~~~~~~~~   87 (197)
T d1qmva_          20 VDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK------LGCEVLGVSV-D-----SQFTHLAWIN   87 (197)
T ss_dssp             ETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT------TTEEEEEEES-S-----CHHHHHHHHT
T ss_pred             eCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhcc------CCcEEEEEec-C-----CHHHHHhhhc
Confidence            35677899999999999999875 667666655  569999999973      4699999986 3     1334455643


Q ss_pred             -hhcCCCceeeccCCCCCHHHHHHHHHhhCCC------CCcEEEEECCCCceec
Q 005245          409 -LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       409 -~~~~MPWyAVpf~~~id~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~  455 (706)
                       ....+-=.-++||=+.|.  .+.+.+.|++-      ..|...++||+|++..
T Consensus        88 ~~~~~~~~~~~~fpll~D~--~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~  139 (197)
T d1qmva_          88 TPRKEGGLGPLNIPLLADV--TRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQ  139 (197)
T ss_dssp             SCGGGTCCCSCSSCEEECT--TCHHHHHTTCEETTTTEECEEEEEECTTSBEEE
T ss_pred             chhhhcCcCCCccceEecc--chHHHHHhCCCcccCCeeeEEEEEECCCCcEEE
Confidence             222211123455433232  34466666773      3588999999999854

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.58  E-value=0.0027  Score=52.93  Aligned_cols=69  Identities=12%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|+++|.+.||++|..  +..+++++.+.   ..+.+.++-|.+        |+..                      
T Consensus        17 ~~~vlv~F~a~wC~~C~~--~~~~~~~l~~~---~~~~~~~~~v~~--------d~~~----------------------   61 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKL--IAPVIDELAKE---YSGKIAVYKLNT--------DEAP----------------------   61 (104)
T ss_dssp             SSCEEEEEECTTCHHHHH--HHHHHHHHHHH---TTTTCEEEEEET--------TTCH----------------------
T ss_pred             CCcEEEEEEcCccCCccc--cCchhHHHHHh---hcCccceeEEec--------ccch----------------------
Confidence            577999999999999876  33444444321   234566666643        2211                      


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           .+.+.|++++.|+++++ .+|+.+.
T Consensus        62 -----~l~~~~~V~~~Pt~~~~-~~G~~v~   85 (104)
T d1fb6a_          62 -----GIATQYNIRSIPTVLFF-KNGERKE   85 (104)
T ss_dssp             -----HHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             -----hhhhhcceeeeeEEEEE-EcCeEEE
Confidence                 26678899999999998 5898774

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.42  E-value=0.0028  Score=57.76  Aligned_cols=50  Identities=20%  Similarity=0.070  Sum_probs=35.6

Q ss_pred             CCCCceeecceecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245          333 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPI  391 (706)
Q Consensus       333 g~~~~kV~Is~L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpi  391 (706)
                      ..+|+.|++++|+||.|.|+|=..| ||.|  +++.|.+.|.+.         +.+||.|+.
T Consensus        30 ~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~---------g~~vv~Is~   82 (166)
T d1xvqa_          30 GGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---------GATVLCVSK   82 (166)
T ss_dssp             CTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT---------TCEEEEEES
T ss_pred             CCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcccc---------ccccccccc
Confidence            4578899999999999999887554 4435  444555444332         478999986

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.41  E-value=0.019  Score=51.87  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             cCCCCceeecceecCcEEEEEEe-cCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH
Q 005245          332 ECPTKRKVSIDVLRRKSVLLLVS-DLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA  408 (706)
Q Consensus       332 dg~~~~kV~Is~L~gK~VlL~fS-al~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~  408 (706)
                      -..+|+.|++++++||.|.|+|= +.|||.|..  +.|.+.|.+.        .+.++|=|+. |     +....++|..
T Consensus        28 ~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~--------~~~~vv~Is~-d-----~~~~~~~~~~   93 (163)
T d1psqa_          28 TTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--------DNTVVLTVSM-D-----LPFAQKRWCG   93 (163)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--------TTEEEEEEES-S-----CHHHHHHHHH
T ss_pred             ECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh--------cccceEEEEe-c-----cHHHHHHHHH
Confidence            45789999999999998888775 557765655  3444433332        3588888875 2     3556778877


Q ss_pred             hhcCCCceeeccCCCCCHHHHHHHHHhhCCCC------CcEEEEECCCCceec
Q 005245          409 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVN  455 (706)
Q Consensus       409 ~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~  455 (706)
                      ....+++..+.-..  +..    +.+.|++-.      .+..+|+|++|++..
T Consensus        94 ~~~~~~~~~~~~~~--~~~----~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y  140 (163)
T d1psqa_          94 AEGLDNAIMLSDYF--DHS----FGRDYALLINEWHLLARAVFVLDTDNTIRY  140 (163)
T ss_dssp             HHTCTTSEEEECTT--TCH----HHHHHTCBCTTTCSBCCEEEEECTTCBEEE
T ss_pred             HcCCcceeeecccc--chh----HHHhheeecccccceeEEEEEECCCCEEEE
Confidence            76666555444321  122    234445421      236899999999974

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.39  E-value=0.0082  Score=49.96  Aligned_cols=76  Identities=13%  Similarity=0.128  Sum_probs=46.5

Q ss_pred             cceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          341 IDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       341 Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      +..+.++.+.++|++.||++|..  +.+.++-.+...   ..+.  .|.++-+        |.++               
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~--~v~~~~i--------d~~~---------------   61 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTK---AGKG--KILGDMV--------EAIE---------------   61 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHH---TTCC--CEEEEEE--------EGGG---------------
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhh---ccCC--cEEEEEe--------cccc---------------
Confidence            34566777888999999999964  344444333221   2233  3445443        2221               


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                       +         ..+.++|+++++|++++ ..+|+.+.
T Consensus        62 -~---------~~l~~~~~V~~vPTi~i-~~~G~~~~   87 (107)
T d1a8la2          62 -Y---------PEWADQYNVMAVPKIVI-QVNGEDRV   87 (107)
T ss_dssp             -C---------HHHHHHTTCCSSCEEEE-EETTEEEE
T ss_pred             -c---------cccccccccccceEEEE-EeCCeEEE
Confidence             1         12567889999999765 56887664

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.39  E-value=0.0025  Score=62.47  Aligned_cols=104  Identities=11%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             eeeccee---cCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhc
Q 005245          338 KVSIDVL---RRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY  411 (706)
Q Consensus       338 kV~Is~L---~gK~VlL~fS-al~~~~~e--~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~  411 (706)
                      ++..+..   +||.|.|||= +.|||.|-  +..+.+.|+++++      .+.+||-||. |+     ....+.|.+-..
T Consensus        18 ~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~------~g~~vigiS~-Ds-----~~sh~~w~~~~~   85 (237)
T d2zcta1          18 VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR------LGVDLIGLSV-DS-----VFSHIKWKEWIE   85 (237)
T ss_dssp             EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHH------TTEEEEEEES-SC-----HHHHHHHHHHHH
T ss_pred             CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhcc------CCcceeeccC-Cc-----HHHHHHHhhhhh
Confidence            4665553   7887777664 77877764  4679999999984      3599999986 42     344555654322


Q ss_pred             CCCceeeccCCCCCHHHHHHHHHhhCC-------CCCcEEEEECCCCceec
Q 005245          412 MMPWFSVHHPSAIDPAVIRYAKEKWDF-------RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       412 ~MPWyAVpf~~~id~~~~r~ike~~~~-------~~iP~LVvL~pqGkv~~  455 (706)
                      ...-..++||-+.|.  -+.+.+.|++       ...|...|+||+|+|..
T Consensus        86 ~~~~~~l~fpllsD~--~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~  134 (237)
T d2zcta1          86 RHIGVRIPFPIIADP--QGTVARRLGLLHAESATHTVRGVFIVDARGVIRT  134 (237)
T ss_dssp             HHHCCCCCSCEEECG--GGHHHHHTTCC----CCTTCCEEEEECTTSBEEE
T ss_pred             hhcccccccccccCc--chHHHHHcCCccccccccceeeeEEECCCCEEEE
Confidence            211224455432232  2444555665       46899999999999843

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.27  E-value=0.0068  Score=50.75  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.|.++.++.       .+.+.++-|-+        |+.                     
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~-------~~~~~~~~vd~--------d~~---------------------   63 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTY-------SDRLKVVKLEI--------DPN---------------------   63 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHT-------TTTCEEEEEES--------TTC---------------------
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhc-------CCcceeceecc--------ccc---------------------
Confidence            478999999999999975  4555554444       34577777632        211                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            ..+.+.|++++.|+++++. +|+.+.
T Consensus        64 ------~~l~~~~~I~~~Pt~~~~~-~g~~v~   88 (108)
T d1thxa_          64 ------PTTVKKYKVEGVPALRLVK-GEQILD   88 (108)
T ss_dssp             ------HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             ------HHHHHHhcccCCCEEEEEE-CCEEEE
Confidence                  1356788999999999997 787764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=96.21  E-value=0.0036  Score=53.35  Aligned_cols=70  Identities=11%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      .+|.|+++|.+.||++|..  +...++++.+.    -.++.++.|-+        |+.                      
T Consensus        25 ~~k~vvv~F~a~wC~~C~~--~~p~~~~~~~~----~~~~~~~~vd~--------d~~----------------------   68 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKM--IAPIFAELAKK----FPNVTFLKVDV--------DEL----------------------   68 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHH--HHHHHHHHHHH----CSSEEEEEEET--------TTC----------------------
T ss_pred             CCCEEEEEEEcCccccchh--hhhhhhhhhcc----CCCceEEeeee--------ecc----------------------
Confidence            3689999999999999974  55566666532    23455555522        211                      


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                           +.+.+.|++++.|+++++. +|+.+..
T Consensus        69 -----~~l~~~~~I~~~Pt~~~~k-~G~~v~~   94 (113)
T d1ti3a_          69 -----KAVAEEWNVEAMPTFIFLK-DGKLVDK   94 (113)
T ss_dssp             -----HHHHHHHHCSSTTEEEEEE-TTEEEEE
T ss_pred             -----ccccccCeecccceEEEEE-CCEEEEE
Confidence                 1245677999999999996 9988754

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.12  E-value=0.0059  Score=52.07  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|.++|.+.||++|..  +.|.++.++.+       +++.++-|-+        |+                     
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-------~~v~~~~vd~--------d~---------------------   66 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA-------GKVIFLKVDV--------DA---------------------   66 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT-------TTSEEEEEET--------TT---------------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhccc-------ceEEEEEeec--------cc---------------------
Confidence            4789999999999999865  44555554442       2355554432        21                     


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                            -+.+.+.|++++.|+++++ .+|+.+..
T Consensus        67 ------~~~l~~~~~v~~~Pt~~~~-~~G~~v~~   93 (112)
T d1ep7a_          67 ------VAAVAEAAGITAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             ------THHHHHHHTCCBSSEEEEE-ETTEEEEE
T ss_pred             ------cccccccccccCCCEEEEE-ECCEEEEE
Confidence                  1235567899999999988 58887643

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.07  E-value=0.0073  Score=51.53  Aligned_cols=69  Identities=12%  Similarity=0.354  Sum_probs=46.7

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|+++|.+.||++|..  +...++++.+.    -.+  ++|+-+ |.     |+.                       
T Consensus        28 ~~~vlv~F~a~wC~~C~~--~~p~~~~l~~~----~~~--~~~~~v-d~-----~~~-----------------------   70 (114)
T d1xfla_          28 KTLVVVDFTASWCGPCRF--IAPFFADLAKK----LPN--VLFLKV-DT-----DEL-----------------------   70 (114)
T ss_dssp             TCEEEEEEECTTCHHHHH--HHHHHHHHHHH----CSS--EEEEEE-ET-----TTS-----------------------
T ss_pred             CCeEEEEEEcCCCCCccc--cccchhhhccc----ccc--cceeEE-Ee-----eec-----------------------
Confidence            689999999999999975  34555555432    123  455544 21     211                       


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                          ..+.+.|++++.|+++++ .+|+.+..
T Consensus        71 ----~~l~~~~~V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          71 ----KSVASDWAIQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----eeeccccceeeeEEEEEE-ECCEEEEE
Confidence                124567899999999999 68988754

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.06  E-value=0.0036  Score=55.76  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             CccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHh--CCceeEEEeccCCchhhhhhhh
Q 005245          498 VIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAA--GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       498 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~--~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .++++  +||+|.|||.+.+ ..|++|.+.+.+++++.  +..||+++|+.|..++.+++.+
T Consensus        22 ~ls~l--~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~   81 (144)
T d1i5ga_          22 ALPSL--AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYY   81 (144)
T ss_dssp             EGGGG--TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             eHHHc--CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHH
Confidence            45565  8999999999932 33599999999997753  4589999999998887766543

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.96  E-value=0.0073  Score=51.80  Aligned_cols=68  Identities=6%  Similarity=0.019  Sum_probs=45.9

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      ++.|+++|++.||++|..  +..+++++.+.    -.+..++.|-+        |+                        
T Consensus        26 ~~~vvv~F~a~wC~~C~~--~~p~l~~l~~~----~~~v~~~~vd~--------d~------------------------   67 (113)
T d1r26a_          26 DILTVAWFTAVWCGPCKT--IERPMEKIAYE----FPTVKFAKVDA--------DN------------------------   67 (113)
T ss_dssp             SSCEEEEEECTTCHHHHH--THHHHHHHHHH----CTTSEEEEEET--------TT------------------------
T ss_pred             CCeEEEEEECCCCccchh--hceeccccccc----ccccccccccc--------cc------------------------
Confidence            578999999999999975  44444454422    12455555422        21                        


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                         ...+.+.|++++.|+++++ .+|+.+.
T Consensus        68 ---~~~l~~~~~V~~~Pt~~~~-~~G~~v~   93 (113)
T d1r26a_          68 ---NSEIVSKCRVLQLPTFIIA-RSGKMLG   93 (113)
T ss_dssp             ---CHHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ---chhhHHHccccCCCEEEEE-ECCEEEE
Confidence               1346678899999999988 5788874

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.007  Score=50.57  Aligned_cols=70  Identities=16%  Similarity=0.200  Sum_probs=46.3

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|+++|.+.||++|..  +...++++...   ...++.++-|-+        |+                  .     
T Consensus        20 ~~~v~v~F~a~wC~~C~~--~~~~~~~~a~~---~~~~~~~~~vd~--------d~------------------~-----   63 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKM--IAPILDEIADE---YQGKLTVAKLNI--------DQ------------------N-----   63 (108)
T ss_dssp             SSEEEEEEECTTCHHHHH--HHHHHHHHHHH---TTTTEEEEEEET--------TT------------------C-----
T ss_pred             CCcEEEEEECCCCCCccc--cCcHHHHHHHH---hhcceeeeeccc--------cc------------------h-----
Confidence            689999999999999964  44444444321   234565555521        11                  0     


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                          +.+.++|++++.|+++++ .+|+.+..
T Consensus        64 ----~~l~~~~~v~~~PT~~~~-~~G~~v~~   89 (108)
T d2trxa_          64 ----PGTAPKYGIRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             ----TTHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----hhHHHHhCCCcEEEEEEE-ECCEEEEE
Confidence                125567899999999998 58987743

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.72  E-value=0.013  Score=48.68  Aligned_cols=69  Identities=13%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      .+|.|.++|.+.||++|..  +...++++.+.    -.+..++.|-+        |+.                      
T Consensus        17 ~~~~vvv~F~a~wC~~C~~--~~~~~~~l~~~----~~~~~~~~vd~--------d~~----------------------   60 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKR--IAPFYEECSKT----YTKMVFIKVDV--------DEV----------------------   60 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHH--HHHHHHHHHHH----CTTSEEEEEET--------TTT----------------------
T ss_pred             CCCcEEEEEeCCcccCccc--ccccchhhhhc----ccceEEEeecc--------ccC----------------------
Confidence            4689999999999999976  34444555432    12345555532        211                      


Q ss_pred             CHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          425 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       425 d~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           ..+.+.|++++.|+++++- +|+.+.
T Consensus        61 -----~~~~~~~~V~~~Pt~i~~k-~G~~v~   85 (103)
T d1syra_          61 -----SEVTEKENITSMPTFKVYK-NGSSVD   85 (103)
T ss_dssp             -----HHHHHHTTCCSSSEEEEEE-TTEEEE
T ss_pred             -----cceeeeeeeecceEEEEEE-CCEEEE
Confidence                 1245678999999999994 898764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.71  E-value=0.0064  Score=52.95  Aligned_cols=70  Identities=13%  Similarity=0.285  Sum_probs=41.8

Q ss_pred             ecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          344 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      -..+.|+|.|.+.|||+|.-  +.|.++-++.      .+.++.++-|          |.|+.                 
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~------~~~~~~~~~V----------d~d~~-----------------   74 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF------PQFDWQVAVA----------DLEQS-----------------   74 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC------TTSCCEEEEE----------CHHHH-----------------
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhc------CCCceEEEEE----------ECCCC-----------------
Confidence            44678888999999999764  4555544443      2335666665          22221                 


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              +.|.+.|+++++|+++++ .+|+.+.
T Consensus        75 --------~~l~~~~~V~~~Pt~~~~-~~G~~v~   99 (119)
T d2es7a1          75 --------EAIGDRFNVRRFPATLVF-TDGKLRG   99 (119)
T ss_dssp             --------HHHHHTTTCCSSSEEEEE-SCC----
T ss_pred             --------HHHHHhcCcCcceEEEEE-EcCeEEE
Confidence                    446778899999999999 5788764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0034  Score=54.67  Aligned_cols=20  Identities=0%  Similarity=-0.026  Sum_probs=18.2

Q ss_pred             ecCcEEEEEEecCCCChhHH
Q 005245          344 LRRKSVLLLVSDLDVSNEEL  363 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~  363 (706)
                      -+||.|+++|.+.||++|..
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~   42 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKA   42 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHH
T ss_pred             HcCCcEEEEEEecCCCCcee
Confidence            36999999999999999977

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.023  Score=50.99  Aligned_cols=102  Identities=16%  Similarity=0.247  Sum_probs=64.1

Q ss_pred             CCCCceeeccee--cCcEEEEEE-ecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHH
Q 005245          333 CPTKRKVSIDVL--RRKSVLLLV-SDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE  407 (706)
Q Consensus       333 g~~~~kV~Is~L--~gK~VlL~f-Sal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe  407 (706)
                      +.+|+.|.++++  +||.|.||| -+.|||.|..  +.|.+.|+++++       .+.++=|+. |     +-...++|-
T Consensus        18 ~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-------~~~~~~is~-d-----~~~~~~~f~   84 (156)
T d2a4va1          18 NEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-------YAAVFGLSA-D-----SVTSQKKFQ   84 (156)
T ss_dssp             CTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-------TCEEEEEES-C-----CHHHHHHHH
T ss_pred             CCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh-------ccceeeecc-c-----hhhhHHhhh
Confidence            567889999999  466788876 4789988766  679999999962       356777764 3     244556776


Q ss_pred             HhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcE-----EEEECCCCceec
Q 005245          408 ALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPI-----LVVLDPQGRVVN  455 (706)
Q Consensus       408 ~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~-----LVvL~pqGkv~~  455 (706)
                      +-. ..|+..+.-++   .+    +.+.|++.+.|.     =++++++|+++-
T Consensus        85 ~~~-~l~f~~L~D~~---~~----v~~~ygv~~~~~~~~~r~~~i~~dg~i~~  129 (156)
T d2a4va1          85 SKQ-NLPYHLLSDPK---RE----FIGLLGAKKTPLSGSIRSHFIFVDGKLKF  129 (156)
T ss_dssp             HHH-TCSSEEEECTT---CH----HHHHHTCBSSSSSCBCCEEEEEETTEEEE
T ss_pred             ccc-CccceeccchH---HH----HHHHcCCCccccCCeeEEEEEEECCeEEE
Confidence            543 35544433332   23    334456655542     233446787754

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.43  E-value=0.011  Score=49.30  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+++|.+.||++|..  +.+.++.++.+       +++.++=|-+        |                     . 
T Consensus        17 ~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-------~~~~~~~vd~--------~---------------------~-   59 (105)
T d1nw2a_          17 DKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA-------DKVTVAKLNV--------D---------------------E-   59 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHHT-------TTCEEEEEET--------T---------------------T-
T ss_pred             CCcEEEEEECCCCCCcccccchhhhhhhhcC-------CceEEEEEEC--------C---------------------C-
Confidence            688999999999999886  45666666553       2355544421        1                     0 


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           -+.+.++|++++.|+++++. +|+.+.
T Consensus        60 -----~~~~~~~~~V~~~Pt~~~~~-~G~~~~   85 (105)
T d1nw2a_          60 -----NPETTSQFGIMSIPTLILFK-GGEPVK   85 (105)
T ss_dssp             -----CHHHHHHTTCCBSSEEEEEE-TTEEEE
T ss_pred             -----CcccHHHCCcceeeEEEEEE-CCEEEE
Confidence                 12335678999999999995 788663

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.016  Score=48.42  Aligned_cols=69  Identities=13%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|.+.|.+.||++|..  +..+++++.+.    -.+.  +|+-+ |.     |+.                       
T Consensus        20 ~k~vvv~F~a~wC~~C~~--~~p~~~~l~~~----~~~~--~~~~v-d~-----d~~-----------------------   62 (105)
T d2ifqa1          20 DKLVVVDFSATWCGPCKM--IKPFFHSLSEK----YSNV--IFLEV-DV-----DDC-----------------------   62 (105)
T ss_dssp             TSCEEEEEECTTCHHHHH--HHHHHHHHHHH----CTTS--EEEEE-ET-----TTC-----------------------
T ss_pred             CCEEEEEEEcCCccchhh--hhhhhhhhccc----cccc--eeeec-cc-----ccC-----------------------
Confidence            578999999999999976  23344444322    1233  34433 21     211                       


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                          ..+.++|++++.|+++++ .+|+.+..
T Consensus        63 ----~~~~~~~~V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          63 ----QDVASECEVKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             ----HHHHHHTTCCBSSEEEEE-ETTEEEEE
T ss_pred             ----HhHHHHcCceEEEEEEEE-ECCEEEEE
Confidence                123567899999999999 68988853

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.018  Score=48.82  Aligned_cols=66  Identities=5%  Similarity=-0.027  Sum_probs=44.6

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|.++|++.||++|..  +.|.++.++.        .+..++-|.+        |+.                     
T Consensus        21 ~klvvv~F~a~wC~~Ck~~~p~~~~la~~~--------~~~~f~~vd~--------d~~---------------------   63 (107)
T d1gh2a_          21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKY--------PQAVFLEVDV--------HQC---------------------   63 (107)
T ss_dssp             TSCEEEEEECSSCHHHHHHHHHHHHHHHHC--------TTSEEEEEET--------TTS---------------------
T ss_pred             CCEEEEEEECCCCCCccccchhhhcccccc--------cccccccccc--------ccc---------------------
Confidence            678999999999999886  4555554432        1344444432        211                     


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            ..|.+.|++++.|+++++ .+|+.+.
T Consensus        64 ------~~l~~~~~v~~~Pt~~~~-~~G~~v~   88 (107)
T d1gh2a_          64 ------QGTAATNNISATPTFQFF-RNKVRID   88 (107)
T ss_dssp             ------HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ------hhhhhhcCceeceEEEEE-ECCEEEE
Confidence                  124567899999999999 6888764

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.24  E-value=0.015  Score=48.35  Aligned_cols=70  Identities=10%  Similarity=-0.008  Sum_probs=47.1

Q ss_pred             ceecCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccC
Q 005245          342 DVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP  421 (706)
Q Consensus       342 s~L~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~  421 (706)
                      ..|+|....+.|++.||++|.  .+..+++++.+.    ..+.+++-|-+        |+.                   
T Consensus        11 k~l~~~~~i~~F~s~~C~~C~--~~~p~~~~~a~~----~~~i~~~~vd~--------~~~-------------------   57 (96)
T d1hyua4          11 RDIDGDFEFETYYSLSCHNCP--DVVQALNLMAVL----NPRIKHTAIDG--------GTF-------------------   57 (96)
T ss_dssp             HHCCSCEEEEEEECTTCSSHH--HHHHHHHHHHHH----CTTEEEEEEET--------TTC-------------------
T ss_pred             HhcCCCeEEEEEECCCCcchH--HHHHHHHHHHHh----CCceEEEEEec--------ccc-------------------
Confidence            356788899999999999995  455666677532    34566665532        221                   


Q ss_pred             CCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          422 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       422 ~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              +.+.+.|++++.|++++   +|+.+.
T Consensus        58 --------~~l~~~~~I~~vPt~~~---ng~~~~   80 (96)
T d1hyua4          58 --------QNEITERNVMGVPAVFV---NGKEFG   80 (96)
T ss_dssp             --------HHHHHHTTCCSSSEEEE---TTEEEE
T ss_pred             --------hHHHhhcccccccEEEE---CCEEEE
Confidence                    12445679999999865   677653

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=95.14  E-value=0.04  Score=50.33  Aligned_cols=103  Identities=17%  Similarity=0.149  Sum_probs=68.1

Q ss_pred             CCCceeecceecC-cEEEEEE-ecCCCCh--hHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHh
Q 005245          334 PTKRKVSIDVLRR-KSVLLLV-SDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL  409 (706)
Q Consensus       334 ~~~~kV~Is~L~g-K~VlL~f-Sal~~~~--~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~  409 (706)
                      .++.+|++++++| |.|.||| -+.|+|.  .|+..+.+.|+++++      .+.+||=||. |     +-...+.|.+-
T Consensus        14 ~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~------~g~~vigIS~-D-----~~~~~~~~~~~   81 (170)
T d2h01a1          14 NTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE------RNVELLGCSV-D-----SKFTHLAWKKT   81 (170)
T ss_dssp             SCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH------TTEEEEEEES-S-----CHHHHHHHHTS
T ss_pred             CCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc------CCeeEecccC-C-----cHHHHHhHhhh
Confidence            4667899999998 6677766 4677555  555679999999974      4599999985 3     23445566432


Q ss_pred             h------cCCCceeeccCCCCCHHHHHHHHHhhCC-----CCCcEEEEECCCCceec
Q 005245          410 Q------YMMPWFSVHHPSAIDPAVIRYAKEKWDF-----RKKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~------~~MPWyAVpf~~~id~~~~r~ike~~~~-----~~iP~LVvL~pqGkv~~  455 (706)
                      .      ...|+.-+.-++   ..    +.+.|++     ...+...|+|++|++..
T Consensus        82 ~~~~~~~~~~~f~llsD~~---~~----~~~~ygv~~~~~~~~R~tfiId~~G~I~~  131 (170)
T d2h01a1          82 PLSQGGIGNIKHTLISDIS---KS----IARSYDVLFNESVALRAFVLIDKQGVVQH  131 (170)
T ss_dssp             CGGGTCCCSCSSEEEECTT---SH----HHHHTTCEETTTEECCEEEEECTTSBEEE
T ss_pred             hhhhccccccCCceeEcCc---cH----HHHHhCCccccccceeeeEEEcCCCeEEE
Confidence            1      234555554443   23    3334444     23478999999999864

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0099  Score=52.79  Aligned_cols=68  Identities=13%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCC
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA  423 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~  423 (706)
                      +|.|+|.|.+.|||+|.-  +.|.++-++.      .+..|.+.-|          |.|+                    
T Consensus        36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~------~~~~~~~a~V----------d~d~--------------------   79 (132)
T d2hfda1          36 DGVVLLSSDPKRTPEVSDNPVMIGELLREF------PDYTWQVAIA----------DLEQ--------------------   79 (132)
T ss_dssp             EEEEEECSCCSCCSSSSCCTHHHHHHHTTC------TTSCEEEEEE----------CHHH--------------------
T ss_pred             CcEEEEEeeCCCChhHHHHHHHHHHHHHHc------cCCcceeEEE----------EecC--------------------
Confidence            467888999999999874  4555443332      2334666555          2222                    


Q ss_pred             CCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          424 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       424 id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           -+.|.+.|+++++|+++++ .+|+.+.
T Consensus        80 -----~~~la~~~~V~~~PT~~~~-~~G~~v~  105 (132)
T d2hfda1          80 -----SEAIGDRFGVFRFPATLVF-TGGNYRG  105 (132)
T ss_dssp             -----HHHHHHHHTCCSCCEEEEE-ETTEEEE
T ss_pred             -----CHHHHHhhccCcceeEEEE-EcCcEee
Confidence                 2457788899999999999 7887763

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.79  E-value=0.0087  Score=47.95  Aligned_cols=27  Identities=15%  Similarity=0.089  Sum_probs=19.3

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHH
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRE  372 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~e  372 (706)
                      +|...++|++.||++|..  +.+.++.++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~   30 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANE   30 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccc
Confidence            477888999999999865  445444443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=94.57  E-value=0.03  Score=49.12  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             CccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHh--CCceeEEEeccCCchhhhhhhh
Q 005245          498 VIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAA--GIALEMLYVGKSNPKEKARRII  556 (706)
Q Consensus       498 ~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~--~~~~E~v~Vgkdn~~e~v~~~~  556 (706)
                      .+++.  .||+|.|||.+.+ ..|+++.+.+.+++++.  +..|+++.|+.|..++..++.+
T Consensus        22 ~l~~~--~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~   81 (144)
T d1o73a_          22 SLGSL--VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYY   81 (144)
T ss_dssp             CSGGG--TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHH
T ss_pred             eHHHh--CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHH
Confidence            44554  8999999999932 33599999999997763  5689999999998777665543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.56  E-value=0.03  Score=47.65  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCC
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID  425 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id  425 (706)
                      +|.|.++|.+.||++|..  +..+++++.+.    -.+.  +|+-+ |-     |++                       
T Consensus        25 ~k~vvv~f~a~wC~~C~~--~~p~~~~l~~~----~~~v--~~~~v-d~-----~~~-----------------------   67 (112)
T d1f9ma_          25 DKPVVLDMFTQWCGPCKA--MAPKYEKLAEE----YLDV--IFLKL-DC-----NQE-----------------------   67 (112)
T ss_dssp             TSCEEEEEECTTCHHHHH--HHHHHHHHHHH----CTTS--EEEEE-EC-----SST-----------------------
T ss_pred             CCEEEEEEEcCCCcchHH--HHHHHhhhccc----cccc--eeecc-cc-----ccc-----------------------
Confidence            478999999999999964  34445555432    1234  44443 10     110                       


Q ss_pred             HHHHHHHHHhhCCCCCcEEEEECCCCceecc
Q 005245          426 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ  456 (706)
Q Consensus       426 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~  456 (706)
                         -+.|.+.|++++.|+++++ .+|+.+..
T Consensus        68 ---~~~l~~~~~V~~~Pt~~~~-k~G~~v~~   94 (112)
T d1f9ma_          68 ---NKTLAKELGIRVVPTFKIL-KENSVVGE   94 (112)
T ss_dssp             ---THHHHHHHCCSSSSEEEEE-ETTEEEEE
T ss_pred             ---chhhHhheeeccCCEEEEE-ECCEEEEE
Confidence               1235577899999999999 58998753

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.33  E-value=0.036  Score=49.89  Aligned_cols=44  Identities=14%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             ecceecCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEec
Q 005245          340 SIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI  391 (706)
Q Consensus       340 ~Is~L~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpi  391 (706)
                      .+..++||.++|-|.+.||++|..  |.|.++|++-.        +.+++.|..
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--------~~~~~~i~~   93 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--------NIELAIISK   93 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--------TEEEEEECH
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--------CCcEEEEEC
Confidence            345688999999999999999766  78998887642        477777753

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0081  Score=50.99  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=44.6

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|-+.||++|..  +.+.++.++++.      .+..|+++-+        |.++                ++ 
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~------~~~~v~~~~v--------d~~~----------------~~-   71 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA------EGSEIRLAKV--------DATE----------------ES-   71 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT------TCCCCBCEEE--------ETTT----------------CC-
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccc------cccceeeecc--------cccc----------------ch-
Confidence            3699999999999999875  456666555542      2234555543        2221                11 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCce
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV  453 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv  453 (706)
                              .+.++|++++.|+++++ ++|+.
T Consensus        72 --------~l~~~~~i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          72 --------DLAQQYGVRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             --------SSHHHHTCCSSSEEEEE-ESSCS
T ss_pred             --------hHHHHhCCccCCeEEEE-ECCeE
Confidence                    24567899999999988 45543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.028  Score=50.14  Aligned_cols=68  Identities=6%  Similarity=0.020  Sum_probs=48.4

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      ++|.|++.|++.||++|..  +.|.++-++.+       +.+.++-|-+        |+.                  | 
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-------~~v~~~~VDv--------d~~------------------~-   66 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK-------NFAVIYLVDI--------TEV------------------P-   66 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT-------TTEEEEEEET--------TTC------------------C-
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhh-------ccceEEEeec--------ccc------------------c-
Confidence            4689999999999999886  56766666664       3456655532        211                  1 


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                              -+.+.|+++++|+++++ .+|+.+.
T Consensus        67 --------~la~~~~I~~~PT~~~f-~~g~~i~   90 (137)
T d1qgva_          67 --------DFNKMYELYDPCTVMFF-FRNKHIM   90 (137)
T ss_dssp             --------TTTTSSCSCSSCEEEEE-ETTEEEE
T ss_pred             --------hhhhhcCeeeEEEEEEE-eCCcEEE
Confidence                    24467899999999999 6787664

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.12  Score=46.22  Aligned_cols=71  Identities=11%  Similarity=0.247  Sum_probs=43.8

Q ss_pred             ecCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceee
Q 005245          344 LRRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV  418 (706)
Q Consensus       344 L~gK~VlL~fSal~~~~~e~~~-----L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAV  418 (706)
                      -++|.|+++|.+.||.+|....     =.++-+-+.+       +|  |++.+ |-    ++                  
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-------~f--V~~~v-~~----~~------------------   87 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-------HF--IFWQV-YH----DS------------------   87 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-------TE--EEEEE-ES----SS------------------
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-------he--eEeee-cc----cc------------------
Confidence            4589999999999999986531     1233333321       24  33332 10    11                  


Q ss_pred             ccCCCCCHHHHHHHHHhhCCCCCcEEEEECCC-Ccee
Q 005245          419 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVV  454 (706)
Q Consensus       419 pf~~~id~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~  454 (706)
                             .++ +.+.+.+++.+.|+++++||. |+.+
T Consensus        88 -------~e~-~~~~~~y~v~~~Pti~~idp~~ge~v  116 (147)
T d2dlxa1          88 -------EEG-QRYIQFYKLGDFPYVSILDPRTGQKL  116 (147)
T ss_dssp             -------HHH-HHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred             -------hhh-hhhhhheecCceeEEEEEeCCCCeEe
Confidence                   112 334567899999999999995 6654

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.031  Score=53.66  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             eeecceecC-cEEEEEEe-cCCCChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHH----h
Q 005245          338 KVSIDVLRR-KSVLLLVS-DLDVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA----L  409 (706)
Q Consensus       338 kV~Is~L~g-K~VlL~fS-al~~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~----~  409 (706)
                      +|++++++| |.|.|||= +.|+|.|  |+..|.+.|+++++      .+.+|+-||. |+     -.....|.+    +
T Consensus        18 ~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~------~g~~v~giS~-Ds-----~~sh~~~~~~~~~~   85 (220)
T d1prxa_          18 RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK------RNVKLIALSI-DS-----VEDHLAWSKDINAY   85 (220)
T ss_dssp             EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT------TTEEEEEEES-SC-----HHHHHHHHHHHHHH
T ss_pred             CEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc------ccceeecccc-cc-----ccchhhhhhhhhhc
Confidence            699999998 76777765 4555545  55679999999973      4599999986 42     333444432    2


Q ss_pred             hcCCCceeeccCCCCCHHHHHHHHHhhCCC------------CCcEEEEECCCCceec
Q 005245          410 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVN  455 (706)
Q Consensus       410 ~~~MPWyAVpf~~~id~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~  455 (706)
                      .....=..++||-.-|  .-+.+.+.|++-            -.+...|+||+|++..
T Consensus        86 ~~~~~~~~l~fpllsD--~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~  141 (220)
T d1prxa_          86 NSEEPTEKLPFPIIDD--RNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKL  141 (220)
T ss_dssp             TTSCCCSCCSSCEEEC--TTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEE
T ss_pred             cccccccCcccccccC--cccHHHHHhCCccccccccccceeeeEEEEEEcCccceeE
Confidence            2211112344432212  123445555552            3588999999999853

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.88  E-value=0.12  Score=43.67  Aligned_cols=69  Identities=13%  Similarity=-0.017  Sum_probs=45.7

Q ss_pred             cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCC
Q 005245          345 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS  422 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~  422 (706)
                      .+|.|+++|.+.||++|..  +.+.++-++++      +++..|+-|   |       -++                   
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~------~~~v~~~~v---d-------~~~-------------------   70 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV------EKNITLAQI---D-------CTE-------------------   70 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTT------TTTCEEEEE---E-------TTT-------------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhc------ccceeeeee---e-------ccc-------------------
Confidence            4689999999999999876  34555554443      234455544   2       110                   


Q ss_pred             CCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          423 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       423 ~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                            -+.|.++|++++.|+++++ ++|+...
T Consensus        71 ------~~~l~~~~~v~~~Pti~~f-~~g~~~~   96 (119)
T d2b5ea4          71 ------NQDLCMEHNIPGFPSLKIF-KNSDVNN   96 (119)
T ss_dssp             ------CHHHHHHTTCCSSSEEEEE-ETTCTTC
T ss_pred             ------hHHHHHHhccccCCeEEEE-ECCEEee
Confidence                  1245677899999999999 6665543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=91.68  E-value=0.27  Score=46.98  Aligned_cols=100  Identities=13%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             ceeecce-ecCcEEEEEEecCC-CChh--HHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhh--
Q 005245          337 RKVSIDV-LRRKSVLLLVSDLD-VSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ--  410 (706)
Q Consensus       337 ~kV~Is~-L~gK~VlL~fSal~-~~~~--e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~--  410 (706)
                      .++++++ ++||.|.|||=-.+ +|-|  |+..+.+.|++.++      .+.+|+=||. |+     -...+.|-+-.  
T Consensus        20 g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~------~~~~vigiS~-Ds-----~~sh~~w~~~~~~   87 (219)
T d1xcca_          20 GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK------LNCKLIGFSC-NS-----KESHDKWIEDIKY   87 (219)
T ss_dssp             SCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT------TTEEEEEEES-SC-----HHHHHHHHHHHHH
T ss_pred             CcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc------cceEEEeecC-cc-----HhHHhHHhhhhHh
Confidence            3688888 58998888886444 4334  44579999999973      4699999986 52     44555664332  


Q ss_pred             ----cCCCceeeccCCCCCHHHHHHHHHhhCCC--------C----CcEEEEECCCCceec
Q 005245          411 ----YMMPWFSVHHPSAIDPAVIRYAKEKWDFR--------K----KPILVVLDPQGRVVN  455 (706)
Q Consensus       411 ----~~MPWyAVpf~~~id~~~~r~ike~~~~~--------~----iP~LVvL~pqGkv~~  455 (706)
                          ...|+.-+--++       +.+.+.|++-        +    .....|+||+|++..
T Consensus        88 ~~~~~~l~fpllsD~~-------~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~  141 (219)
T d1xcca_          88 YGKLNKWEIPIVCDES-------RELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKA  141 (219)
T ss_dssp             HHTCSCCCCCEEECTT-------SHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEE
T ss_pred             hcccCCCCcccccccc-------cHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEE
Confidence                245554444432       2344445661        1    248889999999853

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.63  E-value=0.085  Score=42.26  Aligned_cols=60  Identities=8%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             EEEEecCCCChhHH--HHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCCCHH
Q 005245          350 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA  427 (706)
Q Consensus       350 lL~fSal~~~~~e~--~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~  427 (706)
                      ..+|++.||++|..  +.|.++-++.       +++++++-|-+        |+++                        
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~-------~~~v~~~~vd~--------d~~~------------------------   45 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEF-------GDKIDVEKIDI--------MVDR------------------------   45 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHH-------CSSCCEEEECT--------TTCG------------------------
T ss_pred             EEEEECCCCcchHHHHHHHhhhcccc-------ccccccccccc--------ccch------------------------
Confidence            34699999999865  4455555544       24577777632        2111                        


Q ss_pred             HHHHHHHhhCCCCCcEEEEECCCCc
Q 005245          428 VIRYAKEKWDFRKKPILVVLDPQGR  452 (706)
Q Consensus       428 ~~r~ike~~~~~~iP~LVvL~pqGk  452 (706)
                         .+.+.|++++.|++++ +.+|+
T Consensus        46 ---~l~~~~~V~~~Pt~~~-~~~~~   66 (85)
T d1nhoa_          46 ---EKAIEYGLMAVPAIAI-NGVVR   66 (85)
T ss_dssp             ---GGGGGTCSSCSSEEEE-TTTEE
T ss_pred             ---hhHHhcCceEeCEEEE-CCcEE
Confidence               2456789999999865 55554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.37  E-value=0.28  Score=42.08  Aligned_cols=50  Identities=12%  Similarity=0.098  Sum_probs=39.7

Q ss_pred             CceEEEEEccCCh-hHHHHHHHHHHHHHHHh--CCceeEEEeccCCchhhhhh
Q 005245          505 EQKHICLYGGEDL-EWVRKFTALMGAVARAA--GIALEMLYVGKSNPKEKARR  554 (706)
Q Consensus       505 egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~--~~~~E~v~Vgkdn~~e~v~~  554 (706)
                      .||.|.|||.+.+ ..|+.+.+.+.+++++.  ...+++++|+.|+.++.++.
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~   77 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAG   77 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHH
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHH
Confidence            8999999999932 33489999999997763  45799999999987776554

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.6  Score=38.70  Aligned_cols=49  Identities=8%  Similarity=0.068  Sum_probs=29.5

Q ss_pred             CCCCceeeccee-cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEe
Q 005245          333 CPTKRKVSIDVL-RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLP  390 (706)
Q Consensus       333 g~~~~kV~Is~L-~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIp  390 (706)
                      |+.|..-+++.- ..-.++.+||+.||++|+.  +.++.+++       ..+|+..+|-
T Consensus         1 ~~~~~~~~~~~~~~~~p~i~lft~~~C~~C~~--a~~~L~~~-------~~~~~~~~v~   50 (100)
T d1wjka_           1 GSSGSSGNLSASNRALPVLTLFTKAPCPLCDE--AKEVLQPY-------KDRFILQEVD   50 (100)
T ss_dssp             CCCCCCCCCCCSCCCCCEEEEEECSSCHHHHH--HHHHTSTT-------SSSSEEEEEE
T ss_pred             CCCCCCCCchhcCCCCCEEEEEECCCCCChHH--HHHHHHHh-------hhhcceEEEe
Confidence            344444444442 3445788899999999984  23333333       3567777774

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.14  E-value=0.21  Score=43.19  Aligned_cols=29  Identities=14%  Similarity=0.030  Sum_probs=21.2

Q ss_pred             CcEEEEEEecCCCChhHH--HHHHHHHHHHh
Q 005245          346 RKSVLLLVSDLDVSNEEL--FLLEQMYRESR  374 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~--~~L~~iY~elk  374 (706)
                      +|.|+++|-+.||++|..  +.+.++-++.+
T Consensus        30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~   60 (140)
T d2b5ea1          30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYA   60 (140)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeccCcccchhHHHHHHHHHHHh
Confidence            789999999999999875  34444444443

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.21  E-value=0.63  Score=39.35  Aligned_cols=90  Identities=11%  Similarity=0.168  Sum_probs=55.2

Q ss_pred             CCccccCCCCceeecce-------ecCcEEEEEEecCCCChhHH----HHHHHHHHHHhhcccCCCCCeEEEEEecccCC
Q 005245          327 QLPLVECPTKRKVSIDV-------LRRKSVLLLVSDLDVSNEEL----FLLEQMYRESRQLSSRTESQYEVVWLPIVDRS  395 (706)
Q Consensus       327 ~~pl~dg~~~~kV~Is~-------L~gK~VlL~fSal~~~~~e~----~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s  395 (706)
                      ..|.|||.+.. +.+..       -+.+.|+++|-+.||..+..    ..+..+|+++....    .+-.|.+.-| |  
T Consensus         3 ~~p~~d~~~~V-~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~----~~~~v~~a~V-d--   74 (124)
T d1a8ya1           3 DFPEYDGVDRV-INVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVL----EDKGVGFGLV-D--   74 (124)
T ss_dssp             CCCCCCCCCCC-EECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHT----GGGTEEEEEE-E--
T ss_pred             CCCccCCCCcc-EECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHh----ccCCeEEEEE-E--
Confidence            35778887542 23321       23578999999999976533    34667777664321    1123555544 3  


Q ss_pred             CCcChhhHHHHHHhhcCCCceeeccCCCCCHHHHHHHHHhhCCCCCcEEEEECCCCceec
Q 005245          396 TPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN  455 (706)
Q Consensus       396 ~~w~D~de~~Fe~~~~~MPWyAVpf~~~id~~~~r~ike~~~~~~iP~LVvL~pqGkv~~  455 (706)
                           .++                         -+.+.+++++++.|++.++. +|+++.
T Consensus        75 -----~~~-------------------------~~~l~~~~~I~~yPTi~~f~-~g~~~~  103 (124)
T d1a8ya1          75 -----SEK-------------------------DAAVAKKLGLTEEDSIYVFK-EDEVIE  103 (124)
T ss_dssp             -----TTT-------------------------SHHHHHTTTCCSTTCEEEEE-SSSEEE
T ss_pred             -----eec-------------------------ccchhhccccccCCcEEEec-cCccEE
Confidence                 111                         12356778999999998885 576653

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=2.5  Score=37.56  Aligned_cols=101  Identities=9%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             CcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCc---------ChhhHHHHH-HhhcCCCc
Q 005245          346 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW---------TEAKEHKFE-ALQYMMPW  415 (706)
Q Consensus       346 gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w---------~D~de~~Fe-~~~~~MPW  415 (706)
                      .|++...||+..||.|...- .++ +++.+     .....|+|+|+-- -.++         -..++.+|. .+....-.
T Consensus        36 a~~tv~vF~D~~CP~C~~~~-~~l-~~l~~-----~~~v~v~~~~~~~-~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~  107 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFW-QQA-RPWVD-----SGKVQLRTLLVGV-IKPESPATAAAILASKDPAKTWQQYEASGGK  107 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHH-HHH-HHHHH-----TTSEEEEEEECCC-SSTTHHHHHHHHHHSSSHHHHHHHHHHTTTC
T ss_pred             CCEEEEEEECCCCcchHHHH-HHH-HHHHh-----ccceeEEEEeccc-CCcchHHHHHHHHhhhCHHHHHHHHHHhhhc
Confidence            46778889999999997632 112 22221     2468899998711 0011         111222232 22211111


Q ss_pred             eeeccCCCCCHHHHHHHH------HhhCCCCCcEEEEECCCCcee
Q 005245          416 FSVHHPSAIDPAVIRYAK------EKWDFRKKPILVVLDPQGRVV  454 (706)
Q Consensus       416 yAVpf~~~id~~~~r~ik------e~~~~~~iP~LVvL~pqGkv~  454 (706)
                      -....+...+....+.|.      +.++++|.|++|+.|++|++.
T Consensus       108 ~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~  152 (169)
T d1v58a1         108 LKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQ  152 (169)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence            111122333445544444      578999999999999999874

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.55  E-value=0.96  Score=40.09  Aligned_cols=58  Identities=17%  Similarity=0.063  Sum_probs=38.7

Q ss_pred             cccCCCCceeeccee-cCcEEEEEEecCC-CChh---HHHHHHHHHHHHhhcccCCCCCeEEEEEeccc
Q 005245          330 LVECPTKRKVSIDVL-RRKSVLLLVSDLD-VSNE---ELFLLEQMYRESRQLSSRTESQYEVVWLPIVD  393 (706)
Q Consensus       330 l~dg~~~~kV~Is~L-~gK~VlL~fSal~-~~~~---e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd  393 (706)
                      |++...+++|+++++ +||.|.|||=-.+ .|.|   .++...+-|+++++      ...++|++..+|
T Consensus        14 l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~------~g~~~i~~~s~~   76 (161)
T d1hd2a_          14 VFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA------KGVQVVACLSVN   76 (161)
T ss_dssp             EECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT------TTCCEEEEEESS
T ss_pred             EEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHH------cCCeEEEEEecC
Confidence            445666889999885 8999999988555 3334   44567888888873      235555544444

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.63  E-value=2.6  Score=35.35  Aligned_cols=74  Identities=7%  Similarity=0.075  Sum_probs=47.8

Q ss_pred             cCcEEEEEEecCCCChhHHHHHHHHHHHHhhcccCCCCCeEEEEEecccCCCCcChhhHHHHHHhhcCCCceeeccCCCC
Q 005245          345 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI  424 (706)
Q Consensus       345 ~gK~VlL~fSal~~~~~e~~~L~~iY~elk~~~~~~~~~fEIVwIpiVd~s~~w~D~de~~Fe~~~~~MPWyAVpf~~~i  424 (706)
                      +.|.|++.|-+.||.+|.-+...+..+++++.    ..+.-|.=|-+.|.    ++                        
T Consensus        18 ~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~----~~~v~ia~Vd~~~~----~~------------------------   65 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKHEAFTAFSKSAHKA----TKDLLIATVGVKDY----GE------------------------   65 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHHHHHHHHHHHHHHH----CSSEEEEEEEECSS----TT------------------------
T ss_pred             cCCcEEEEEECCCCCcccCHHHHHHHHHHHHh----CCCeEEEecccccc----cc------------------------
Confidence            35899999999999999877777777777632    33444444443221    01                        


Q ss_pred             CHHHHHHHHHhhCC--CCCcEEEEECCCCc
Q 005245          425 DPAVIRYAKEKWDF--RKKPILVVLDPQGR  452 (706)
Q Consensus       425 d~~~~r~ike~~~~--~~iP~LVvL~pqGk  452 (706)
                        .--+-|.++|++  ++.|++.++.+.++
T Consensus        66 --~~n~~l~~~~~i~~~~~PTi~~f~~g~~   93 (122)
T d2c0ga2          66 --LENKALGDRYKVDDKNFPSIFLFKGNAD   93 (122)
T ss_dssp             --CTTHHHHHHTTCCTTSCCEEEEESSSSS
T ss_pred             --ccCHHHHHHhhcccCCCCcEEEEeCCcc
Confidence              112334456666  67999999976543

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.32  E-value=0.94  Score=37.68  Aligned_cols=44  Identities=11%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             ccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 005245          501 TWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKS  546 (706)
Q Consensus       501 ~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkd  546 (706)
                      +.+..++++.+|||+++ ..|+.|.+.+.++++..+..+  ++|..+
T Consensus        21 ~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v--~~v~~~   65 (115)
T d1zmaa1          21 EALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHI--YFINSE   65 (115)
T ss_dssp             HHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCC--EEEETT
T ss_pred             HHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhh--hhheee
Confidence            34668999999999943 446999999999987766554  455444

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.95  E-value=0.75  Score=39.10  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=44.7

Q ss_pred             cCCCCccccccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhhhh
Q 005245          494 SVDPVIPTWIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRIIST  558 (706)
Q Consensus       494 ~id~~I~~~i~egK~I~LYgg~d~-~Wir~FT~~l~~I~~~~~~~~E~v~Vgkdn~~e~v~~~~~~  558 (706)
                      |-...+++.  .||.+.|||.+.+ .+|+...+.+.+++++ ...+.++.|+-+...+.+++.++.
T Consensus        14 G~~~~l~~~--~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~-~~~v~~v~v~~~~~~~~~~~~~~~   76 (134)
T d1lu4a_          14 GAPFDGASL--QGKPAVLWFWTPWCPFCNAEAPSLSQVAAA-NPAVTFVGIATRADVGAMQSFVSK   76 (134)
T ss_dssp             SCEEEGGGG--TTSCEEEEEECTTCHHHHHHHHHHHHHHHH-CTTSEEEEEECSSCHHHHHHHHHH
T ss_pred             CCEEcHHHh--CCCEEEEEEeecccCCceecchhHHHHhhh-hccccccccccccchhhhhhhhhh
Confidence            444445554  7999999998832 4458888999988766 667888999887766776665433