Citrus Sinensis ID: 005254
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | 2.2.26 [Sep-21-2011] | |||||||
| Q2KJJ5 | 800 | Transducin beta-like prot | yes | no | 0.949 | 0.837 | 0.407 | 1e-149 | |
| Q5U2W5 | 800 | Transducin beta-like prot | yes | no | 0.946 | 0.835 | 0.397 | 1e-148 | |
| Q8C4J7 | 801 | Transducin beta-like prot | yes | no | 0.946 | 0.833 | 0.394 | 1e-147 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.949 | 0.829 | 0.396 | 1e-145 | |
| Q9USN3 | 777 | Probable U3 small nucleol | yes | no | 0.937 | 0.851 | 0.329 | 1e-103 | |
| Q05946 | 817 | U3 small nucleolar RNA-as | yes | no | 0.937 | 0.810 | 0.321 | 7e-89 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.804 | 0.372 | 0.290 | 3e-69 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.800 | 0.449 | 0.253 | 4e-55 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.779 | 0.326 | 0.267 | 3e-43 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.463 | 0.241 | 0.299 | 1e-39 |
| >sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/712 (40%), Positives = 418/712 (58%), Gaps = 42/712 (5%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
K +Y E ++ FY GG + + G + C CG +NI+D+ S A ++S + + IT
Sbjct: 11 FKSNYAVERKIEPFYKGGKVQLDQTGQHLFCVCGTRVNILDVASGAVLRSLEQEDQEDIT 70
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
A LSPDDK+L ++ + + W R WK H P MA P+ LLAT G D
Sbjct: 71 AFDLSPDDKVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGCD 130
Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
V VWDV + TH+F+G GVV + FHPD + LLFS + D ++RVW L + C+A
Sbjct: 131 GAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADTSIRVWSLQERSCLAV 190
Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
L H+S VTS+ ++DG T++S+GRDK+ +WDLR TVP +E VEA +P A
Sbjct: 191 LTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDLRSLQATRTVPVFESVEAAVLLPEEPA 250
Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
+ + S +HF+T G++G +R+W A S C++ Q+ +
Sbjct: 251 PELGVKSAG------------LHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRG 290
Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
R T T+ + LL VTAD LLLY L L K+ GY+EE+LD++FL
Sbjct: 291 PGRELTHCTLAHAAGLLLSVTADHNLLLY-------DARSLRLRKQFAGYSEEVLDVRFL 343
Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
G E+ ++ VA+N ++V+DL + +C +L GH++IVL LD G+ L + +KD S
Sbjct: 344 GPEDSHVVVASNSPCLKVFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQS 399
Query: 423 VRLW---DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDD 477
+R+W S CV G+GH +VG + S+ + FLV+GS D T+K+W LS
Sbjct: 400 IRVWRMNKSGEVACVAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKG 459
Query: 478 AEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
P+ L+A+A H KDINS+AVAPND L+ TGSQDRTA +W LP + TF G
Sbjct: 460 TGHEGGPVFLQAQATQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSG 519
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
H+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++
Sbjct: 520 HRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLL 579
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
S G+DGL+KLWT++ EC+ T D HEDK+W L + + TG SD+ V LW D T AE
Sbjct: 580 SSGSDGLLKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAE 639
Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+ E K EE V++ QEL+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 640 QAEEQAKREEQVVKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
Bos taurus (taxid: 9913) |
| >sp|Q5U2W5|TBL3_RAT Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/714 (39%), Positives = 421/714 (58%), Gaps = 46/714 (6%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTIEGGSDTIT 64
K +Y E ++ FY GG + G + C CG +NI+D+++ I+S + + IT
Sbjct: 11 FKANYAVERKIEPFYKGGKAQLDQTGRHLFCVCGTKVNILDVASGDLIRSLEQEDQEDIT 70
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
A LSPDD++L ++ + + W R WK H P MA + LLAT G D
Sbjct: 71 AFDLSPDDEVLVTASRALLLAQWAWREGTVARLWKAIHTAPVASMAFDATSTLLATGGCD 130
Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
V VWD+ + TH+F+G GVV + FHPD + LLFS + D ++RVW L + C+A
Sbjct: 131 GAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAV 190
Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
L H+S VTS++ + DG T++S+GRDK+ +WDLR Y TVP +E VEA +P A
Sbjct: 191 LTAHYSAVTSLSFSEDGHTMLSSGRDKICIVWDLRSYETSRTVPVFESVEASVLLPEEPA 250
Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
+ + +HF+T G++GI+R+W A S C+Y Q +M
Sbjct: 251 LALGVKNSG------------LHFLTAGDQGILRVWEAASGQCVYTQP--------QMSG 290
Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
++ T T+ + LL VTAD LLLY + L L K+ GY+EE+LD++FL
Sbjct: 291 LRQELTHCTLARAAGLLLTVTADHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFL 343
Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
G + ++ VA+N ++V++L +++C +L GH++IVL LD + L + +KD S
Sbjct: 344 GPNDSHIIVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASCAKDQS 399
Query: 423 VRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-------SFD 472
+R+W CV G+GH +VG + S+ ++FLV+GS D T+K+W S +
Sbjct: 400 IRIWRMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSKN 459
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
SD P L+A++ H KDINSLAV+PND L+ TGSQDRTA +W LP + F
Sbjct: 460 TASDGDLIP--LQAQSTQRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVF 517
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RGAQ
Sbjct: 518 SGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQ 577
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
++S G+DGL+KLWT+++ EC+ T D HEDK+W L + + TGGSD+ + LW D T
Sbjct: 578 LLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTE 637
Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
AE+ E K EE V++ QEL+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 638 AEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8C4J7|TBL3_MOUSE Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 282/714 (39%), Positives = 421/714 (58%), Gaps = 46/714 (6%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
K +Y E ++ FY GG + G ++ C CG +NI+D+ S A ++S + + IT
Sbjct: 11 FKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDIT 70
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
+ LSPDD++L ++ + + W R WK H P MA + LLAT G D
Sbjct: 71 SFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGCD 130
Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
V VWD+ + TH+F+G GVV + FHPD + LLFS + D ++RVW L + C+A
Sbjct: 131 GAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAV 190
Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP--PG 241
L H+S VTS++ + G T++S+GRDK+ +WDL+ Y TVP +E VEA +P P
Sbjct: 191 LTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQPA 250
Query: 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEM 300
A +S +HF+T G++GI+R+W A S C+Y Q +M
Sbjct: 251 PALGV--------------KSSGLHFLTAGDQGILRVWEAASGQCVYTQP--------QM 288
Query: 301 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360
++ T T+ + LL VTAD LLLY + L L K+ GY+EE+LD++
Sbjct: 289 PGLRQELTHCTLARAADLLLTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVLDVR 341
Query: 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420
FLG + ++ VA+N ++V++L +++C +L GH++IVL LD + L + +KD
Sbjct: 342 FLGPSDSHIVVASNSPCLKVFELQTLACQ-ILHGHTDIVLALD---VFRKGWLFASCAKD 397
Query: 421 NSVRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD----G 473
S+R+W CV G+GH +VG + S+ ++FLV+GS D T+K+W
Sbjct: 398 QSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLA 457
Query: 474 LSDDAEQ-PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
S A+ P+ L+A+ H KDINSLAV+PND L+ TGSQDRTA +W LP + F
Sbjct: 458 KSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVF 517
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
GH+RG+W+V+FSP DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG+Q
Sbjct: 518 TGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQ 577
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
++S G+DGL+KLWT+++ EC+ T D HEDK+W L + + TGGSD+ + LW D T
Sbjct: 578 LLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTE 637
Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
AE+ E K EE V++ QEL+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 638 AEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
Mus musculus (taxid: 10090) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 515 bits (1327), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/712 (39%), Positives = 417/712 (58%), Gaps = 42/712 (5%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDL-SNASIKSTIEGGSDTIT 64
K +Y E ++ FY GG + G + C CG +NI+++ S A ++S + + IT
Sbjct: 11 FKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRSLEQEDQEDIT 70
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGAD 123
A LSPD+++L ++ + + W R WK H P MA P+ LLAT G D
Sbjct: 71 AFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGCD 130
Query: 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183
V VWD+ + TH+F+G GVV + FHPD + LLFS + DA +RVW L + C+A
Sbjct: 131 GAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCLAV 190
Query: 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243
L H+S VTS+A ++DG T++S+GRDK+ +WDL+ TVP +E VEA +P
Sbjct: 191 LTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLPE--- 247
Query: 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDD 302
+Q +K S ++F+T G++G +R+W A S C+Y Q +
Sbjct: 248 -----EPVSQLGVK----SPGLYFLTAGDQGTLRVWEAASGQCVYTQA--------QPPG 290
Query: 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362
+ T T+ + +L TAD LLLY + L L K+ GY+EE+LD++FL
Sbjct: 291 PGQELTHCTLAHTAGVVLTATADHNLLLY-------EARSLRLQKQFAGYSEEVLDVRFL 343
Query: 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422
G E+ ++ VA+N ++V++L + +C +L GH++IVL LD + L + +KD S
Sbjct: 344 GPEDSHVVVASNSPCLKVFELQTSACQ-ILHGHTDIVLALD---VFRKGWLFASCAKDQS 399
Query: 423 VRLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDD 477
VR+W CV G+GH +VG V S+ ++FLV+GS D T+K+W LS +
Sbjct: 400 VRIWRMNKAGQVMCVAQGSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKN 459
Query: 478 AEQ---PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
P+ L+A+ H KDINS+A+APND L+ TGSQDRTA +W LP + F G
Sbjct: 460 TAPDNGPILLQAQTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSG 519
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
H+RG+W V+FSP+DQV+ TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++
Sbjct: 520 HRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLL 579
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
S G+DGLVKLWT++ EC+ T D HEDK+W L + + TG SD+ V LW D T AE
Sbjct: 580 SSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAE 639
Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+ E ++EE V+R QEL+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 640 QAEEQARQEEQVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
Homo sapiens (taxid: 9606) |
| >sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 377 bits (969), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/717 (32%), Positives = 376/717 (52%), Gaps = 55/717 (7%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESI-NIVDLSNASIKSTIEGG 59
MA + KK + E ++ Y GGP+ S+ + A + I + + S +
Sbjct: 1 MAPIGEKKRFELEKSIEPIYTGGPVAFDSNEKILVTALTDRIIGTRSETGERLFSIKKDE 60
Query: 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT 119
D +TALA++ D K L ++ SR + ++++ + + ++S K H+ P I M P+ LLAT
Sbjct: 61 DDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRIKSMKAHETPVITMTIDPTNTLLAT 120
Query: 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
GA+ V VWD+ G + TH F+GH GV+S++ F + +L SG+DD+ VR+WDL + +
Sbjct: 121 GGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDSRVRLWDLNSSR 180
Query: 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239
+A + H S + + GS L+S RDK V +W+++ S T+P + VEA+ +
Sbjct: 181 SMAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKKRSAVRTIPVFHSVEAIGWV- 239
Query: 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299
N Q +K T GE ++ W+ S S + +
Sbjct: 240 ------------NGQPEEKI-------LYTAGEGNLILAWDWKSG-------SRLDPGVD 273
Query: 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 359
S+ V S LL V +D LLL VP + I K+L G +E++D
Sbjct: 274 TTHSETNAIIQVVPFSENTLLSVHSDLSLLLRK--RVPGEG--FITIKKLNGSFDEVIDC 329
Query: 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419
++G++ +LAV +N E + V VL GH++IVL LD+ S + + TG+K
Sbjct: 330 AWIGDD--HLAVCSNTEFIDVISTDGTQVFGVLEGHTDIVLTLDS---SEDGVWLATGAK 384
Query: 420 DNSVRLWD----SESRCCVGVGTGHMGAVGAVAFSKKLQN----FLVSGSSDHTIKVWSF 471
DN+VRLW+ C+ V TGH +V AVA N FL S S D T+K F
Sbjct: 385 DNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALGPLDVNGYPTFLASSSQDRTLK--RF 442
Query: 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531
+ S + + +A + AH +D+N++ V+ + ++ + SQD+T +W V
Sbjct: 443 NLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGV 502
Query: 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
RGH+RG+W+ F+P + + + SGD+TI+IW++ C++T EGHT ++L+ ++++G
Sbjct: 503 LRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGT 562
Query: 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
Q+VS ADGLVK+W++ +GEC+AT D HED++WALA + +GG+DA+V++W D T
Sbjct: 563 QVVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVWKDVT 622
Query: 652 AAEREEAFRKEEEAVLRGQE----LENAVLDADYTKAIQVAFELRRPHKLFELFASV 704
EE K+ E + R E L N D+ +AI +A L RPH L LF V
Sbjct: 623 ----EEYIAKQAEELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRLFERV 675
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 236/734 (32%), Positives = 360/734 (49%), Gaps = 72/734 (9%)
Query: 4 LPLKKSY-GCEPVLQQFYGGGPLV--VSSDGSFIACACGESINIVDLSNASIK---STIE 57
+ LK SY G L Y G V VS +G +A + INI+DL+ S K
Sbjct: 1 MDLKTSYKGIS--LNPIYAGSSAVATVSENGKILATPVLDEINIIDLTPGSRKILHKISN 58
Query: 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117
ITAL L+PD + L ++ ++++ L T K +RS K P+ + + LL
Sbjct: 59 EDEQEITALKLTPDGQYLTYVSQAQLLKIFHLKTGKVVRSMK-ISSPSYILDADSTSTLL 117
Query: 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS--LLFSGSDDATVRVWDL 175
A G D ++V D++ G+ TH FKGH G +SS+ F+ + LL SG + V+VWDL
Sbjct: 118 AVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKIWLLASGDTNGMVKVWDL 177
Query: 176 LAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR---DYSCKLTV 226
+ +KC+ TL +H S V + I L+S GRD ++NLWD T+
Sbjct: 178 VKRKCLHTLQEHTSAVRGLDIIEVPDNDEPSLNLLSGGRDDIINLWDFNMKKKCKLLKTL 237
Query: 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286
P + VE+ C FL + + I T G I ++ +++S +
Sbjct: 238 PVNQQVES-CG---------FLKDGDGKRI----------IYTAGGDAIFQLIDSESGSV 277
Query: 287 YEQKSSDVTISFEMDDSKRGFTAATVLP--SNQGLLCVTADQQLLLYTTVEVPEKKMELI 344
++ + + F + VLP SN + V +DQ L L E + + I
Sbjct: 278 LKRTNKPIEELFIIG----------VLPILSNSQMFLVLSDQTLQLINVEEDLKNDEDTI 327
Query: 345 -LSKRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYVL-----AGH 395
++ + G + I D++++G E LA+ATN + + V DLS S L GH
Sbjct: 328 QVTSSIAGNHGIIADMRYVGPELNKLALATNSPSLRIIPVPDLSGPEASLPLDVEIYEGH 387
Query: 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMGAVGAVAF-- 449
+++ LD + + I T SKDN+ +W C GH AV AV
Sbjct: 388 EDLLNSLDA---TEDGLWIATASKDNTAIVWRYNENSCKFDIYAKYIGHSAAVTAVGLPN 444
Query: 450 --SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507
SK FL++ S+D TIK W + + + ++ AH KDIN+L+V+PNDS
Sbjct: 445 IVSKGYPEFLLTASNDLTIKKWIIPKPTASMDVQIIKVSEYTRHAHEKDINALSVSPNDS 504
Query: 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567
+ T S D+T +W L + T HKRG+W V F D+++ T+SGDKT+KIWS+
Sbjct: 505 IFATASYDKTCKIWNLENGELEATLANHKRGLWDVSFCQYDKLLATSSGDKTVKIWSLDT 564
Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627
S +KT EGHT++V R SF+ + Q++SCGADGL+K+W +GEC+ T D H +++WAL+
Sbjct: 565 FSVMKTLEGHTNAVQRCSFINKQKQLISCGADGLIKIWDCSSGECLKTLDGHNNRLWALS 624
Query: 628 VGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQV 687
+M + +D + W D T E EE K + V + Q L+N + D+T A +
Sbjct: 625 TMNDGDMIVSADADGVFQFWKDCTEQEIEEEQEKAKLQVEQEQSLQNYMSKGDWTNAFLL 684
Query: 688 AFELRRPHKLFELF 701
A L P +LF +
Sbjct: 685 AMTLDHPMRLFNVL 698
|
Involved in nucleolar processing of pre-18S ribosomal RNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 184/633 (29%), Positives = 304/633 (48%), Gaps = 65/633 (10%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKS---TIEGGSDTITALALSPDDKLLFSSGHS 81
+ S DG A G+S IV A+ T +G + + ++ S D K+L S
Sbjct: 870 VAFSPDGKLFAT--GDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDD 927
Query: 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141
+ +R+WD+S+ +CL+++KGH + P+ +LA+ +D+ V +WD+ G C + F+
Sbjct: 928 QTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQ 987
Query: 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201
GH G V S+ F + D S+L +GS D TVR+WD+ + +C H S V S+ +SDG+
Sbjct: 988 GHTGWVYSVAF--NLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGA 1045
Query: 202 TLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260
L S D+ V LWD+ +C T+ + V +V P G+ S
Sbjct: 1046 MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLAS-------------- 1091
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
G+ IVR+W+ S CLY + + F P+ L
Sbjct: 1092 ---------GGDDQIVRLWDISSGNCLYTLQGYTSWVRF-----------LVFSPNGVTL 1131
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
++DQ + L+ ++ KK L G+ + + F + LA + + V+
Sbjct: 1132 ANGSSDQIVRLW---DISSKKCLYTLQ----GHTNWVNAVAF-SPDGATLASGSGDQTVR 1183
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 439
++D+SS C Y+L GH+ V ++ + + +GS D +VRLW+ S C+ G
Sbjct: 1184 LWDISSSKCLYILQGHTSWV---NSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQG 1240
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H V +V F+ + L SGSSD T+++W + K H +NS
Sbjct: 1241 HTSWVNSVVFNPD-GSMLASGSSDKTVRLWDIS----------SSKCLHTFQGHTNWVNS 1289
Query: 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
+A P+ S++ +GS D+T +W + + TF+GH + SV FSP ++ + S D+T
Sbjct: 1290 VAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQT 1349
Query: 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619
+++WSIS G CL TF GHT+ V F GA + S D V+LW++ +G+C+ T H
Sbjct: 1350 VRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGH 1409
Query: 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
+ + ++ + A+G D V LW+ S+
Sbjct: 1410 NNWVGSIVFSPDGTLLASGSDDQTVRLWNISSG 1442
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 160/630 (25%), Positives = 276/630 (43%), Gaps = 65/630 (10%)
Query: 28 SSDGSFIA-CACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S +G +A C + + ++ + + G S+ + + SPD ++L S G +++
Sbjct: 651 SPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKL 710
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
W + C+++ GH+ +A HP G LA+A D+ + +WD+ G C GH
Sbjct: 711 WSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDW 770
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
V + F PD + L S + D T+++WD+ KC+ TL H V S+A ++DG TL S
Sbjct: 771 VRCVAFSPDGNT--LASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASG 828
Query: 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266
D+ + +W+ C T + A P S +S +TIK
Sbjct: 829 SGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKI--LVSGSGDRTIK--------- 877
Query: 267 FITVGERGIVRMWNADS----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCV 322
+W+ + L+ + +++F P Q L CV
Sbjct: 878 -----------LWDCQTHICIKTLHGHTNEVCSVAFS--------------PDGQTLACV 912
Query: 323 TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYD 382
+ DQ + L+ + + + K G + L + F + Q LA +N + V+++D
Sbjct: 913 SLDQSVRLWNC-----RTGQCL--KAWYGNTDWALPVAF-SPDRQILASGSNDKTVKLWD 964
Query: 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 442
+ L GH++ + + A S + + S D+SVRLW+ + C + H
Sbjct: 965 WQTGKYISSLEGHTDFIYGI---AFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTD 1021
Query: 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502
V AV F + + +GS+D T+K+W+ + ++ H I +A
Sbjct: 1022 WVYAVVFHPQ-GKIIATGSADCTVKLWNIS----------TGQCLKTLSEHSDKILGMAW 1070
Query: 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKI 562
+P+ L+ + S D++ +W V RGH ++S FSP +++ T S D+T+KI
Sbjct: 1071 SPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI 1130
Query: 563 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
W G CLKT GHT+ V +F G + S D V++W V TG+C H
Sbjct: 1131 WDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHL 1190
Query: 623 IWALAVGKKTEMFATGGSDALVNLWHDSTA 652
+ ++A E+ A+G D V +W+ T
Sbjct: 1191 VSSVAFSPDGEVVASGSQDQTVRIWNVKTG 1220
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 158/590 (26%), Positives = 258/590 (43%), Gaps = 40/590 (6%)
Query: 27 VSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
+S DG IA + + + + T+ G D + +++ SPD + + S G + I++
Sbjct: 1080 ISRDGQTIASGSLDKTIKLWSRDGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKL 1139
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
W S L++ GH+ + P G LA+A +D + +WD G GH
Sbjct: 1140 WQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAG 1199
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
V ++ F PD + +GS+D TV++W K + TL+ H V S++ + DG TL SA
Sbjct: 1200 VITVRFSPDGQT--IAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASA 1257
Query: 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK-KRRSLEI 265
DK + LW + D T+ + ++V + S + S+ TIK R +E+
Sbjct: 1258 SADKTIKLWRIADGKLVKTLKGHN--DSVWDVNFSSDGKAIASASRDNTIKLWNRHGIEL 1315
Query: 266 HFITVGERGIVRMWNADSACLYEQKSSDVTI---------SFEMDDSKRGFTAATVLPSN 316
T G+ + + + S D TI E+ G A + L
Sbjct: 1316 ETFTGHSGGVYAVNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDG 1375
Query: 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376
+ AD + L+ + + L K L G N+ I + F + + +A A +
Sbjct: 1376 SIIATAGADGNIQLWHSQDGS-------LLKTLPG-NKAIYGISFTPQGD-LIASANADK 1426
Query: 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436
V+++ + L GH V + S + + S+DN+V+LW+
Sbjct: 1427 TVKIWRVRDGKALKTLIGHDNEV---NKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKT 1483
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDDAEQPMNLKAKAVVAAHGK 495
GH V V+FS + S S+D TI++W SF G NL + AH
Sbjct: 1484 LKGHTDEVFWVSFSPD-GKIIASASADKTIRLWDSFSG---------NLIKS--LPAHND 1531
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
+ S+ P+ S++ + S D+T +WR D + TF GH ++S FSP + + +AS
Sbjct: 1532 LVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSPDGRYIASAS 1591
Query: 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
DKT+KIW I DG L T H + V+ A F G ++S D K+W
Sbjct: 1592 EDKTVKIWQI-DGHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIW 1640
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 170/344 (49%), Gaps = 17/344 (4%)
Query: 305 RGFTAATVL-PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
+ +T+A V P++ + + ++ +T+ V E + ++ L G+ +L + F
Sbjct: 793 QAYTSALVFAPTDSMIKKIFKKEEPGWISTISVVEAEWN-ACTQTLEGHGSSVLSVAF-S 850
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
+ Q +A ++ + ++++D +S + + L GH V + A S + + +GS D ++
Sbjct: 851 ADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVW---SVAFSPDRERVASGSDDKTI 907
Query: 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483
++WD+ S C GH G V +VAFS Q + SGS DHTIK+W D S Q +
Sbjct: 908 KIWDAASGTCTQTLEGHGGRVQSVAFSPDGQR-VASGSDDHTIKIW--DAASGTCTQTLE 964
Query: 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
HG + S+A +P+ V +GS D+T +W T GH +WSV
Sbjct: 965 --------GHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVA 1016
Query: 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603
FSP Q V + S DKTIKIW + G+C +T EGH V F G ++ S D +K
Sbjct: 1017 FSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIK 1076
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+W +G C T + H D +W++A + A+G D + +W
Sbjct: 1077 IWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIW 1120
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| 255558071 | 876 | U3 small nucleolar RNA-associated protei | 0.992 | 0.800 | 0.759 | 0.0 | |
| 225454728 | 887 | PREDICTED: transducin beta-like protein | 1.0 | 0.795 | 0.772 | 0.0 | |
| 224124136 | 913 | predicted protein [Populus trichocarpa] | 0.997 | 0.771 | 0.717 | 0.0 | |
| 147775469 | 1616 | hypothetical protein VITISV_036512 [Viti | 1.0 | 0.436 | 0.709 | 0.0 | |
| 356513431 | 883 | PREDICTED: transducin beta-like protein | 0.997 | 0.797 | 0.736 | 0.0 | |
| 297811813 | 878 | hypothetical protein ARALYDRAFT_909661 [ | 0.998 | 0.802 | 0.726 | 0.0 | |
| 30686005 | 876 | transducin/WD40 domain-containing protei | 0.998 | 0.804 | 0.723 | 0.0 | |
| 21539573 | 823 | WD40-repeat protein [Arabidopsis thalian | 0.998 | 0.856 | 0.723 | 0.0 | |
| 356562728 | 879 | PREDICTED: transducin beta-like protein | 0.997 | 0.800 | 0.728 | 0.0 | |
| 449435516 | 871 | PREDICTED: transducin beta-like protein | 0.985 | 0.799 | 0.729 | 0.0 |
| >gi|255558071|ref|XP_002520064.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223540828|gb|EEF42388.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/702 (75%), Positives = 626/702 (89%), Gaps = 1/702 (0%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITA 65
+KK+Y C P +QQFY GGP VSSDGSFIACACGE+I IVD +N ++++TIEG ++ TA
Sbjct: 1 MKKNYRCVPSIQQFYSGGPFAVSSDGSFIACACGEAIKIVDSANGAVRATIEGDTEAATA 60
Query: 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK 125
L LSPDDKL+FS+GHSR+IRVWDLST+KC+RSWKGH+GP +GMACH SGGLLATAGADRK
Sbjct: 61 LTLSPDDKLMFSAGHSRQIRVWDLSTMKCVRSWKGHEGPVMGMACHASGGLLATAGADRK 120
Query: 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185
VLVWDVDGGFCTH+FKGHKGVVSS++FHPD +K LLFSGSDDATVRVW+L +KKC+ATL+
Sbjct: 121 VLVWDVDGGFCTHFFKGHKGVVSSVMFHPDANKMLLFSGSDDATVRVWNLASKKCIATLE 180
Query: 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245
+HF+ VTS+ ++ DG TL+SAGRDKVVNLWDL DY+CK+T+PTYE+VE +C I G+ F
Sbjct: 181 RHFTTVTSLEVSEDGWTLLSAGRDKVVNLWDLHDYTCKITIPTYEIVEDLCVIHSGTQFS 240
Query: 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSK 304
S + SY+Q + K + S I+FITVGERGIVR+W ++ A CLYEQ SSD+T++ + D+SK
Sbjct: 241 SLIGSYSQLSGKSRNGSSAIYFITVGERGIVRIWTSERAVCLYEQNSSDITVTSDTDESK 300
Query: 305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364
RGFTA+ +LPS+QG+LCVTADQQ LLY V PE+K +L L++RL+GYNEEILD++FLGE
Sbjct: 301 RGFTASVILPSDQGVLCVTADQQFLLYLAVGHPEEKFKLELNRRLIGYNEEILDMRFLGE 360
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
EE+ LAVATNIEQ++VYDL SMSCSYVL GH+EIVLCLDTC SG+ LIVTGSKD++VR
Sbjct: 361 EEKCLAVATNIEQIRVYDLESMSCSYVLPGHTEIVLCLDTCVSRSGRALIVTGSKDHTVR 420
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
LWDSESR CVGVGTGHMG VGAVAFSKKL+NF VSGSSD TIKVWS DG+S+DA+Q +NL
Sbjct: 421 LWDSESRNCVGVGTGHMGGVGAVAFSKKLKNFFVSGSSDRTIKVWSLDGISEDADQFVNL 480
Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544
KAKAVVAAH KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV +GHKRGIWSVEF
Sbjct: 481 KAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEF 540
Query: 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
SPVDQ VITASGDKTIKIW+I+DGSCLKTFEGHTSSVLRASFLTRG Q VSCGADGLVKL
Sbjct: 541 SPVDQCVITASGDKTIKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGADGLVKL 600
Query: 605 WTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEE 664
WTV+T ECIATYD+HEDK+WALAVGK+TEMFATGG DALVNLW+DSTA+++EEAFRKEEE
Sbjct: 601 WTVKTNECIATYDQHEDKVWALAVGKQTEMFATGGGDALVNLWYDSTASDKEEAFRKEEE 660
Query: 665 AVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
VL+GQELENA+L ADYT+AIQ+AFELRRPHKLFELF+ +CR
Sbjct: 661 GVLKGQELENALLYADYTRAIQIAFELRRPHKLFELFSQICR 702
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454728|ref|XP_002272675.1| PREDICTED: transducin beta-like protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/708 (77%), Positives = 629/708 (88%), Gaps = 2/708 (0%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MAS LKK+Y P LQQFY GGP V+SDGSFI CAC ++I IVD SNASI+S +EG S
Sbjct: 1 MASPTLKKNYRSTPALQQFYTGGPFAVASDGSFIVCACDDAIKIVDSSNASIRSVVEGDS 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
T+TALALSPDD+LLFSS HSR+IRVW+LS+LKC+RSWKGH+GP +GMAC SGG+LATA
Sbjct: 61 QTVTALALSPDDRLLFSSSHSRQIRVWELSSLKCIRSWKGHEGPVMGMACDASGGVLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240
VATL++HFS VTS+A++ DG TL+SAGRDKVVNLWDL DYSCKLTVPTYE++E VC I
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKVVNLWDLHDYSCKLTVPTYEVLEGVCVIHS 240
Query: 241 GSAFDSFLSSYNQQT-IKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISF 298
S F S L SY +Q KKK S I+FITVGERG VR+WN++ A CL+EQ+SSDVT+S
Sbjct: 241 KSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVCLFEQQSSDVTVSS 300
Query: 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358
+ DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+ E+ ++L+LSKRLVGYNEEI+D
Sbjct: 301 DSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTHSEEMLKLMLSKRLVGYNEEIVD 360
Query: 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418
+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH+ IVLCLDTC SSG+ +VTGS
Sbjct: 361 MKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHTGIVLCLDTCVSSSGRTFVVTGS 420
Query: 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478
KDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKKL+NF VSGSSD T+KVWS DGLSDD
Sbjct: 421 KDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKLRNFFVSGSSDRTLKVWSLDGLSDDT 480
Query: 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG 538
EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPDLVSVV +GHKRG
Sbjct: 481 EQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG 540
Query: 539 IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598
+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRASFLTRG Q+VSCGA
Sbjct: 541 VWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRASFLTRGTQVVSCGA 600
Query: 599 DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658
DGLVKLWT++T ECIATYD+HEDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEA
Sbjct: 601 DGLVKLWTIKTNECIATYDQHEDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEA 660
Query: 659 FRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
FRKEEE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + R
Sbjct: 661 FRKEEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSR 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124136|ref|XP_002319254.1| predicted protein [Populus trichocarpa] gi|222857630|gb|EEE95177.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/755 (71%), Positives = 626/755 (82%), Gaps = 51/755 (6%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
M+SL +KK+Y C P LQQFY GGP VSSDGSFIACA G++I I+D SNASIK++IE +
Sbjct: 1 MSSLQIKKNYRCVPSLQQFYSGGPFAVSSDGSFIACANGDAIKILDSSNASIKASIEVDT 60
Query: 61 DT-ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLAT 119
D+ +TALAL P+D+ LFS+GHSR IRVWDLST KC+RSWKGHDGP + MACH SGGLLAT
Sbjct: 61 DSGLTALALDPNDRFLFSAGHSRLIRVWDLSTFKCIRSWKGHDGPVMSMACHASGGLLAT 120
Query: 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
AGADRKVLVWDVDGGFCTHYFKGHK VV+SI+FHPDT+K+LLFSGS DATVRVWDLLAKK
Sbjct: 121 AGADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKK 180
Query: 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDK----------------------------- 210
C+ATL++HFS +TSMA++ DG TL++AGRDK
Sbjct: 181 CIATLERHFSALTSMAVSEDGWTLLTAGRDKTLDGTQPTRGLDQSKVKTIEEGLIRPHQV 240
Query: 211 ----------------VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254
VVNLWDL DY CK+T+PTYE++E +C + G+ SFL S NQQ
Sbjct: 241 KNPGRPGTQSTRDKIHVVNLWDLHDYVCKMTIPTYEVLEGLCVVKSGTELASFLGSCNQQ 300
Query: 255 TIKKKRRSLEIHFITVGERGIVRMWNADSAC---LYEQKSSDVTISFEMDDSKRGFTAAT 311
+ K++ RS I+F+TVGERGIVR+W DS C LYEQKSSDV +S + DDS RGFTAA
Sbjct: 301 SGKRRDRSSPIYFVTVGERGIVRIW--DSECGVSLYEQKSSDVAVSSDTDDSLRGFTAAV 358
Query: 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371
+LP +QGLLCVT D L Y+ + PE+K +LIL+KRLVGYNEEILD++FLGEEE++LAV
Sbjct: 359 ILPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILDMRFLGEEEKFLAV 418
Query: 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431
ATN+EQVQVYD+ SMSCSYVLAGH+EIVLCLDTC SSG+ L+ TGSKDNSVRLW+SESR
Sbjct: 419 ATNLEQVQVYDMESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLATGSKDNSVRLWNSESR 478
Query: 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491
C+GVGTGHMG VGAVAFSKK +NF VSGSSD TIKVWS DG+SDDA+QP+NLKAKAVVA
Sbjct: 479 NCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDADQPINLKAKAVVA 538
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
AH KDINSLA+APNDSLVC+GSQDRTACVWRLPDLVSVV +GHKRGIWSVEFSPVDQ V
Sbjct: 539 AHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCV 598
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
ITASGDKTIK+W+I+DGSCLKTFEGHTSSVLRASFLTRG+Q VSCGADGLVKLWTV+T E
Sbjct: 599 ITASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGADGLVKLWTVKTNE 658
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQE 671
C ATYD+HEDK+WALA+GKKTEMFATGG DA+VNLW+DSTA+++EEAFRKEEE VLRGQE
Sbjct: 659 CTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEAFRKEEEGVLRGQE 718
Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
LENAVLDADY KAIQ+AFEL RP+KLFELFA +CR
Sbjct: 719 LENAVLDADYIKAIQIAFELHRPNKLFELFAELCR 753
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775469|emb|CAN76090.1| hypothetical protein VITISV_036512 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/770 (70%), Positives = 627/770 (81%), Gaps = 64/770 (8%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MAS LKK+Y P LQQFY GGP V+SDGSFI CAC ++I IVD SNASI+S +EG S
Sbjct: 1 MASPTLKKNYRSTPALQQFYTGGPFAVASDGSFIVCACDDAIKIVDSSNASIRSVVEGDS 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
T+TALALSPDD+LLFSS HSR+IRVW+LS+LKC+RSWKGH+GP +GMAC SGG+LATA
Sbjct: 61 QTVTALALSPDDRLLFSSSHSRQIRVWELSSLKCIRSWKGHEGPVMGMACDASGGVLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
GADRKVLVWDVDGG+CTHYFKGHKGVV+SI+FHPD ++ LL SGSDDATVRVWDL++KKC
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHKGVVTSIIFHPDVNRLLLVSGSDDATVRVWDLMSKKC 180
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDK-------------VVNLWDLRDYSCKLTVP 227
VATL++HFS VTS+A++ DG TL+SAGRDK VVNLWDL DYSCKLTVP
Sbjct: 181 VATLERHFSAVTSLAVSEDGWTLLSAGRDKAGLHLFXIFTADMVVNLWDLHDYSCKLTVP 240
Query: 228 TYEMVEAVCAIPPGSAFDSFLSSYNQQT-IKKKRRSLEIHFITVGERGIVRMWNADSA-C 285
TYE++E VC I S F S L SY +Q KKK S I+FITVGERG VR+WN++ A C
Sbjct: 241 TYEVLEGVCVIHSKSPFASSLDSYKRQKGRKKKSESPAIYFITVGERGTVRIWNSEGAVC 300
Query: 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345
L+EQ+SSDVT+S + DDSKRGFTAAT+LP +QGLLCVT DQQ L Y+T+ E+ ++L+L
Sbjct: 301 LFEQQSSDVTVSSDSDDSKRGFTAATILPLDQGLLCVTVDQQFLFYSTLTXSEEMLKLML 360
Query: 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405
SKRLVGYNEEI+D+KFLGE+EQ+LAVATN+EQVQVYDL+SMSCSYVL+GH IVLCLDTC
Sbjct: 361 SKRLVGYNEEIVDMKFLGEDEQFLAVATNLEQVQVYDLASMSCSYVLSGHXGIVLCLDTC 420
Query: 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465
SSG+ +VTGSKDNSVRLW+SESRCC+GVGTGH GAVGAVAFSKK +NF VSGSSD T
Sbjct: 421 VSSSGRTFVVTGSKDNSVRLWESESRCCIGVGTGHTGAVGAVAFSKKXRNFFVSGSSDRT 480
Query: 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525
+KVWS DGLSDD EQP++LKAKAVVAAH KDINSLAVAPNDSLVC+GSQDRTACVWRLPD
Sbjct: 481 LKVWSLDGLSDDTEQPISLKAKAVVAAHDKDINSLAVAPNDSLVCSGSQDRTACVWRLPD 540
Query: 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 585
LVSVV +GHKRG+WSVEFSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGHTSSVLRAS
Sbjct: 541 LVSVVVLKGHKRGVWSVEFSPVDQCVMTASGDKTIKIWAISDGSCLKTFEGHTSSVLRAS 600
Query: 586 FLTRGAQIVSC--------------------------GADGLVKLWTVRTGECIATYDKH 619
FLTRG Q+VSC GADGLVKLWT++T ECIATYD+H
Sbjct: 601 FLTRGTQVVSCGNGAYCYLIGLCIIPITYVFNNPSFSGADGLVKLWTIKTNECIATYDQH 660
Query: 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE----------------- 662
EDK+WALAVGKKTEM ATGGSDA+VNLWHDSTA+++EEAFRKE
Sbjct: 661 EDKVWALAVGKKTEMLATGGSDAVVNLWHDSTASDKEEAFRKECNEKFEIGIMWHQVHKT 720
Query: 663 ------EEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
EE VL+GQELENA+ D DYTKAIQ+AFELRRPHKLFELF+ + R
Sbjct: 721 XNENSKEEGVLKGQELENALSDTDYTKAIQIAFELRRPHKLFELFSELSR 770
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513431|ref|XP_003525417.1| PREDICTED: transducin beta-like protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/714 (73%), Positives = 611/714 (85%), Gaps = 10/714 (1%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
M L LK +Y C P LQQFY GGP VVSSD SFIACACGESI IVD + A+I+ST+ S
Sbjct: 1 MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLGADS 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
++ TALALSPDD+LLFSSGHSR+I+VWDLSTLKC+RSWKGH+GP + M CHPSGGLLAT
Sbjct: 61 ESFTALALSPDDRLLFSSGHSRQIKVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATG 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 175
GADRKVLVWDVDGG+CTHYFKGH GVVS ++FHPD +K LLFSGSDD ATVRVWD+
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHPDPEKQLLFSGSDDGGDHATVRVWDIS 180
Query: 176 --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 233
K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL DYS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHDYSSKKTVITNEAVE 240
Query: 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 292
AVC + GS F S L SY QQ +KK+ S +FITVGERGIVR+WN+ A C++EQK+S
Sbjct: 241 AVCVLGSGSPFASSLDSY-QQNLKKRDGSQIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
DVT + + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ +E E+ ++L L+KRLVGY
Sbjct: 300 DVTANIDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LECTEELLQLNLTKRLVGY 358
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
NEEI+D+KF+G++E++LA+ATN+EQV+VYDL+SMSCSYVL+GH+EI+LCLDTC SSGK
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQVRVYDLASMSCSYVLSGHTEIILCLDTCVSSSGKT 418
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
LIVTGSKDNSVRLW+SES C+GVG GHMGAVGA+AFSK+ Q+F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWESESANCIGVGIGHMGAVGAIAFSKRKQDFFVSGSSDHTLKVWSMD 478
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
GLSD+ P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLSDNMTMPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
+GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658
Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CR
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCR 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811813|ref|XP_002873790.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata] gi|297319627|gb|EFH50049.1| hypothetical protein ARALYDRAFT_909661 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/712 (72%), Positives = 618/712 (86%), Gaps = 7/712 (0%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MA LKK+Y C L+QFYGGGP +VSSDGSFIACACG++INIVD +++S+KSTIEG S
Sbjct: 1 MAPQSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDAINIVDSTDSSVKSTIEGES 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
DT+TALALSPDD+LLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61 DTLTALALSPDDRLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT+K++LFSGSDDATVRVWDLLAK
Sbjct: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTNKNILFSGSDDATVRVWDLLAKNT 180
Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
KC+A L+KHFS VTS+A++ DG L SAGRDKVVNLWDL DYSCK T+ TYE++EAV
Sbjct: 181 EKKCLAILEKHFSAVTSIALSEDGWNLFSAGRDKVVNLWDLHDYSCKTTIATYEVLEAVT 240
Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
A+ G+ F SF++S +Q+ KKK + +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 AVSSGTPFASFVASLDQKKSKKKESDSQGTYFITVGERGVVRIWKSEGSICLYEQKSSDI 300
Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
T+S + ++SKRGFTAA +L S++GLLCVTADQQ Y+ VE E+ EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLSSDRGLLCVTADQQFFFYSVVENVEES-ELVLSKRLVGYNE 359
Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E++L LDTC SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVILSLDTCVSSSGNVLI 419
Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479
Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
S+ +E P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEGSEDPVNLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITEGTQFV 599
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659
Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFELRRPHK+FELFA +CR
Sbjct: 660 KEDEFRKEEEAILRGQELENAVLDAEYTKAIRLAFELRRPHKVFELFAGLCR 711
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686005|ref|NP_568338.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9755727|emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gi|332004950|gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/712 (72%), Positives = 616/712 (86%), Gaps = 7/712 (0%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MA LKK+Y C L+QFYGGGP +VSSDGSFIACACG+ INIVD +++S+KSTIEG S
Sbjct: 1 MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
DT+TALALSPDDKLLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61 DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK
Sbjct: 121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180
Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV
Sbjct: 181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240
Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
+ G+ F SF++S +Q+ KKK + +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300
Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ Y+ VE E+ EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEE-TELVLSKRLVGYNE 359
Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419
Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479
Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659
Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CR
Sbjct: 660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCR 711
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21539573|gb|AAM53339.1| WD40-repeat protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/712 (72%), Positives = 616/712 (86%), Gaps = 7/712 (0%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MA LKK+Y C L+QFYGGGP +VSSDGSFIACACG+ INIVD +++S+KSTIEG S
Sbjct: 1 MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
DT+TALALSPDDKLLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61 DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK
Sbjct: 121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180
Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV
Sbjct: 181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240
Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLE-IHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
+ G+ F SF++S +Q+ KKK + +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300
Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ Y+ VE E+ EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEE-TELVLSKRLVGYNE 359
Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419
Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479
Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654
SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDSTA++
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659
Query: 655 REEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+E+ FRKEEEA+LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CR
Sbjct: 660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCR 711
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562728|ref|XP_003549621.1| PREDICTED: transducin beta-like protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1067 bits (2760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/714 (72%), Positives = 603/714 (84%), Gaps = 10/714 (1%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
M L LK +Y C P LQQFY GGP VVSSD SFIACACGESI IVD + A+I+ST++ S
Sbjct: 1 MEPLRLKTNYRCVPALQQFYTGGPFVVSSDSSFIACACGESIKIVDSATAAIRSTLDADS 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
++ TALALSPDD+LLFSSGHSR+IRVWDLSTLKC+RSWKGH+GP + M CHPSGGLLAT
Sbjct: 61 ESFTALALSPDDRLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMTCHPSGGLLATG 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDL- 175
GADRKVLVWDVDGG+CTHYFKGH GVVS ++FH D +K LLFSGSDD ATVRVWD+
Sbjct: 121 GADRKVLVWDVDGGYCTHYFKGHGGVVSCVMFHSDPEKQLLFSGSDDGGDHATVRVWDIS 180
Query: 176 --LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVE 233
K C+ATLD H S VTS+A++ DG TL+SAGRDKVV LWDL YS K TV T E VE
Sbjct: 181 KTKKKNCIATLDNHSSAVTSLALSEDGWTLLSAGRDKVVTLWDLHGYSGKKTVITNEAVE 240
Query: 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSS 292
AVC I GS F S L Y QQ K S +FITVGERGIVR+WN+ A C++EQK+S
Sbjct: 241 AVCVIGAGSPFASSLDLY-QQNAKIHDGSEIFYFITVGERGIVRIWNSKGAGCIFEQKTS 299
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
DVT + D S+RGFT+A +L S+QGLLCVTADQQ L Y+ ++ E+ ++L L+KRLVGY
Sbjct: 300 DVTAGMDEDGSRRGFTSAVMLASDQGLLCVTADQQFLFYS-LDFTEQLLQLNLTKRLVGY 358
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
NEEI+D+KF+G++E++LA+ATN+EQ++VYDLSSMSCSYVL+GH+EIVLCLD+C SSGK
Sbjct: 359 NEEIVDMKFIGDDEKFLALATNLEQIRVYDLSSMSCSYVLSGHTEIVLCLDSCVSSSGKP 418
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
LIVTGSKDNSVRLW+ ES C+GVG GHMGAVGA+AFSK+ ++F VSGSSDHT+KVWS D
Sbjct: 419 LIVTGSKDNSVRLWEPESANCIGVGIGHMGAVGAIAFSKRKRDFFVSGSSDHTLKVWSMD 478
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532
GL D+ P+NLKAKAVVAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV F
Sbjct: 479 GLLDNMTVPINLKAKAVVAAHDKDINSVAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVF 538
Query: 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592
+GHKRGIWSVEFSPVDQ V+TASGDKTI+IW+ISDGSCLKTFEGHTSSVLRA F+TRG Q
Sbjct: 539 KGHKRGIWSVEFSPVDQCVVTASGDKTIRIWAISDGSCLKTFEGHTSSVLRALFVTRGTQ 598
Query: 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652
IVSCGADGLVKLWTV+T EC+ATYD HEDK+WALAVG+KTE ATGG DA+VNLW DSTA
Sbjct: 599 IVSCGADGLVKLWTVKTNECVATYDHHEDKVWALAVGRKTEKLATGGGDAVVNLWFDSTA 658
Query: 653 AEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
A++EEAFRKEEE V++GQELENAV DADYTKAIQ+AFELRRPH+LFELFA +CR
Sbjct: 659 ADKEEAFRKEEEGVVKGQELENAVSDADYTKAIQIAFELRRPHRLFELFAELCR 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435516|ref|XP_004135541.1| PREDICTED: transducin beta-like protein 3-like [Cucumis sativus] gi|449488540|ref|XP_004158077.1| PREDICTED: transducin beta-like protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/702 (72%), Positives = 606/702 (86%), Gaps = 6/702 (0%)
Query: 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG-SDTIT 64
K +Y C P LQQFY GG VVSSD SFIACACG+SI IVD A+I+ST+EGG S+ T
Sbjct: 5 FKNNYRCVPFLQQFYEGGAFVVSSDASFIACACGDSIKIVDSETAAIRSTVEGGESEVFT 64
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124
ALALSP+DKLLFS+GHSR+IRVWDLSTLKC+RSWKGHDGP +GMACH SGGLLATAGADR
Sbjct: 65 ALALSPNDKLLFSAGHSRQIRVWDLSTLKCVRSWKGHDGPVMGMACHLSGGLLATAGADR 124
Query: 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
KVLVWDVDGGFCTHYF GHKGVVSSILFHPD +K LLFSGS+D VR WDL++KKCVATL
Sbjct: 125 KVLVWDVDGGFCTHYFTGHKGVVSSILFHPDPNKQLLFSGSEDGNVRAWDLMSKKCVATL 184
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244
H S VTS+ I+ DG TL++AGRDKVV++W+L +Y+CK TV TYE++EAV I S F
Sbjct: 185 G-HESTVTSIDISEDGWTLLTAGRDKVVHVWNLHNYTCKKTVLTYEVLEAVLVIHSSSDF 243
Query: 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDS 303
S + S++++ ++ S EI+FITVGERG+VR+W+++SA CL+EQKSSDV S +MD+
Sbjct: 244 ASCVGSFSKKR-EETSASSEIYFITVGERGVVRLWSSESAVCLFEQKSSDV--STKMDEG 300
Query: 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
RGFTAA +LPSN+GLLCVTADQQ + Y+ V+ + +M LI+S+RL+GYNEEI+D+KFLG
Sbjct: 301 NRGFTAAVLLPSNRGLLCVTADQQFIFYSPVKTLKDEMSLIISRRLIGYNEEIVDMKFLG 360
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
++EQ+LAVATN+E ++VYD++SMSCSY+LAGH+EIVLCLD+C SSG LIVTGSKDN+V
Sbjct: 361 DDEQFLAVATNVEHIRVYDIASMSCSYILAGHTEIVLCLDSCVSSSGCTLIVTGSKDNNV 420
Query: 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483
RLWD ES+ C+GVG GHMGAVGAVAFSKK ++F VSGSSD T+KVWSFDGL++D +P+N
Sbjct: 421 RLWDVESKTCIGVGVGHMGAVGAVAFSKKRRDFFVSGSSDRTLKVWSFDGLAEDESRPVN 480
Query: 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE 543
LKAKA+VAAH KDINS+AVAPNDSLVC+GSQDRTACVWRLPDLVSVV RGHKRGIWSVE
Sbjct: 481 LKAKAIVAAHDKDINSIAVAPNDSLVCSGSQDRTACVWRLPDLVSVVVLRGHKRGIWSVE 540
Query: 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603
FSPVDQ V+TASGDKTIKIW+ISDGSCLKTFEGH SSVLRASFLTRG Q+VSCGADG V
Sbjct: 541 FSPVDQCVVTASGDKTIKIWAISDGSCLKTFEGHMSSVLRASFLTRGTQLVSCGADGSVM 600
Query: 604 LWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEE 663
L+TV+T E IA YD+HEDK+WALAVGKKTEM ATGGSD VNLW+DSTA ++EEA RKEE
Sbjct: 601 LFTVKTEERIAVYDQHEDKVWALAVGKKTEMLATGGSDGAVNLWYDSTALDKEEALRKEE 660
Query: 664 EAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVC 705
E VL+GQELENAV DADYTKAIQ+AFELRRPH+L+ LF+ +C
Sbjct: 661 EGVLKGQELENAVSDADYTKAIQIAFELRRPHRLYVLFSELC 702
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| TAIR|locus:2148965 | 876 | TOZ "AT5G16750" [Arabidopsis t | 0.998 | 0.804 | 0.712 | 1.3e-281 | |
| UNIPROTKB|F1NM37 | 812 | TBL3 "Uncharacterized protein" | 0.960 | 0.834 | 0.394 | 9.6e-144 | |
| ZFIN|ZDB-GENE-041114-104 | 898 | tbl3 "transducin (beta)-like 3 | 0.883 | 0.694 | 0.428 | 1.8e-142 | |
| UNIPROTKB|F1Q065 | 803 | TBL3 "Uncharacterized protein" | 0.603 | 0.530 | 0.410 | 6.2e-142 | |
| UNIPROTKB|F1MNS4 | 800 | TBL3 "Transducin beta-like pro | 0.604 | 0.533 | 0.413 | 2.7e-141 | |
| UNIPROTKB|Q2KJJ5 | 800 | TBL3 "Transducin beta-like pro | 0.604 | 0.533 | 0.413 | 2.7e-141 | |
| RGD|1305142 | 800 | Tbl3 "transducin (beta)-like 3 | 0.597 | 0.527 | 0.407 | 4.4e-141 | |
| MGI|MGI:2384863 | 801 | Tbl3 "transducin (beta)-like 3 | 0.604 | 0.533 | 0.408 | 9.1e-141 | |
| UNIPROTKB|Q12788 | 808 | TBL3 "Transducin beta-like pro | 0.604 | 0.528 | 0.408 | 8.2e-138 | |
| DICTYBASE|DDB_G0276283 | 902 | utp13 "U3 snoRNP protein" [Dic | 0.966 | 0.756 | 0.346 | 4.7e-119 |
| TAIR|locus:2148965 TOZ "AT5G16750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2706 (957.6 bits), Expect = 1.3e-281, P = 1.3e-281
Identities = 507/712 (71%), Positives = 603/712 (84%)
Query: 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS 60
MA LKK+Y C L+QFYGGGP +VSSDGSFIACACG+ INIVD +++S+KSTIEG S
Sbjct: 1 MAPHSLKKNYRCSRSLKQFYGGGPFIVSSDGSFIACACGDVINIVDSTDSSVKSTIEGES 60
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
DT+TALALSPDDKLLFS+GHSR+IRVWDL TLKC+RSWKGH+GP +GMACH SGGLLATA
Sbjct: 61 DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATA 120
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178
GADRKVLVWDVDGGFCTHYF+GHKGVVSSILFHPD++K++L SGSDDATVRVWDL AK
Sbjct: 121 GADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNT 180
Query: 179 --KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236
KC+A ++KHFS VTS+A++ DG TL SAGRDKVVNLWDL DYSCK TV TYE++EAV
Sbjct: 181 EKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWDLHDYSCKATVATYEVLEAVT 240
Query: 237 AIPPGSAFDSFLSSYNQQTIKKKRR-SLEIHFITVGERGIVRMWNAD-SACLYEQKSSDV 294
+ G+ F SF++S +Q+ KKK S +FITVGERG+VR+W ++ S CLYEQKSSD+
Sbjct: 241 TVSSGTPFASFVASLDQKKSKKKESDSQATYFITVGERGVVRIWKSEGSICLYEQKSSDI 300
Query: 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354
T+S + ++SKRGFTAA +LPS+ GLLCVTADQQ Y+ VE E+ EL+LSKRLVGYNE
Sbjct: 301 TVSSDDEESKRGFTAAAMLPSDHGLLCVTADQQFFFYSVVENVEET-ELVLSKRLVGYNE 359
Query: 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414
EI D+KFLG+EEQ+LAVATN+E+V+VYD+++MSCSYVLAGH E+VL LDTC SSG +LI
Sbjct: 360 EIADMKFLGDEEQFLAVATNLEEVRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLI 419
Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
VTGSKD +VRLW++ S+ C+GVGTGH G + AVAF+KK +F VSGS D T+KVWS DG+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGI 479
Query: 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
S+D+E+P+NLK ++VVAAH KDINS+AVA NDSLVCTGS+DRTA +WRLPDLV VVT +G
Sbjct: 480 SEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKG 539
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
HKR I+SVEFS VDQ V+TASGDKT+KIW+ISDGSCLKTFEGHTSSVLRASF+T G Q V
Sbjct: 540 HKRRIFSVEFSTVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFV 599
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXX 654
SCGADGL+KLW V T ECIATYD+HEDK+WALAVGKKTEM ATGG DA++NLWHDST
Sbjct: 600 SCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTASD 659
Query: 655 XXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+LRGQELENAVLDA+YTKAI++AFEL RPHK+FELF+ +CR
Sbjct: 660 KEDDFRKEEEAILRGQELENAVLDAEYTKAIRLAFELCRPHKVFELFSGLCR 711
|
|
| UNIPROTKB|F1NM37 TBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
Identities = 281/712 (39%), Positives = 422/712 (59%)
Query: 7 KKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIE-GGSDTITA 65
K +Y ++ FY GG + VS DG F+ C CG +N++D+ ++ ++E + IT+
Sbjct: 13 KSNYAVSRRIEPFYKGGRVQVSRDGKFMFCPCGTKLNVIDVETGALLHSLEQDDQEDITS 72
Query: 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADR 124
LSPDD++L + + ++ W+ +C+R+WK H P M + LLAT G D
Sbjct: 73 FVLSPDDEVLVTGSRALLLKQWNWRENRCVRTWKAVHIAPVATMVFDSTSTLLATGGCDS 132
Query: 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
+ +WD+ +CTH KG GVV + FHPD + LFS S D +R+WDL + KCVA L
Sbjct: 133 TIKIWDMIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSMDYKIRIWDLNSSKCVAVL 192
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244
D HFS VTS+A T+DG+TLIS+GRDK+ +W+L+ T+P YE VEA +P F
Sbjct: 193 DGHFSAVTSLAFTADGNTLISSGRDKICMVWNLKTRESIRTIPIYESVEAAVLLPEQGDF 252
Query: 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN-ADSACLYEQKSSDVTISFEMDDS 303
+Q +KK+ +HF+T G +G++++W A +AC+Y Q + E + S
Sbjct: 253 -------SQLGVKKQG----LHFLTAGSKGVLKVWEVATAACVYSQPVPFEPVESEEEAS 301
Query: 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363
+ T ++P ++ V+ + ++ Y L L K+L GYN+E+LD+KFLG
Sbjct: 302 EHSLTHCMLVPERNEIVTVSVEHNIVFYDA-------QTLQLRKQLAGYNDEVLDVKFLG 354
Query: 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423
+ ++ VATN Q++V++LS+ C +L GH+E +L LD G ++ V+ +KD S+
Sbjct: 355 PGDSHIVVATNSPQLKVFELSTSHCQ-ILYGHTETILALDV--FRKG-LMFVSCAKDKSI 410
Query: 424 RLW--DSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGLSDDAE 479
R+W + + R CV G GH VGAV+ S+ ++F+V+ S D TIKVW+ + L+ A+
Sbjct: 411 RVWRMNKDGRVVCVAQGLGHAHGVGAVSCSRLKESFVVTSSQDCTIKVWNIPESLTSKAK 470
Query: 480 Q-----PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
P L A+ H KDINS+AV+PND L+ TGSQDR A +W PD + F G
Sbjct: 471 AALISGPETLHAQMTERGHDKDINSVAVSPNDKLIATGSQDRLAKLWSCPDCSLLGVFTG 530
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
HKRGIW V+FSPVDQ++ T+S D T+K+W + D SCLKTFEGH +SVL+ F++RG Q++
Sbjct: 531 HKRGIWCVQFSPVDQILATSSADGTLKLWGLQDFSCLKTFEGHDASVLKIIFVSRGTQLL 590
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXX 654
S G+DGL+KLWT++T EC+ T D HEDKIW L K+ +M T SD+ + LW D T
Sbjct: 591 SGGSDGLLKLWTIKTNECVKTLDGHEDKIWGLHTNKQDDMVVTASSDSSITLWKDVTEIE 650
Query: 655 XXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+++ QEL N + + Y KA+ +A L RPH + + ++ +
Sbjct: 651 QEEAQAKREEQIMKEQELSNLLHEKRYLKALGLAISLDRPHTVLTVIKAILK 702
|
|
| ZFIN|ZDB-GENE-041114-104 tbl3 "transducin (beta)-like 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 282/658 (42%), Positives = 413/658 (62%)
Query: 3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-GSD 61
+L K +Y ++ FY GG + VS D I C G INI+ +S I +IE +
Sbjct: 5 TLLFKSNYAVSSRIEPFYKGGKVQVSGDEQHIFCTYGPKINILQISTGKIIHSIEQEDQE 64
Query: 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATA 120
ITA ALSPDD++L S+ + +R WD +C RSW+ H P M+ + LLAT
Sbjct: 65 DITAFALSPDDEMLVSASRALLLRQWDWKQQQCRRSWRAVHSVPVASMSFDCTSTLLATG 124
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
G D + +WDV +CTH KG GVV + FHPD + LFS S D +R+WDL + +C
Sbjct: 125 GCDGTIKLWDVIKQYCTHNLKGSSGVVHLVEFHPDISRLQLFSSSSDCAIRIWDLRSSRC 184
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPP 240
V L+ H+S VT++A + DG TL+S+GRDK+ ++WDL++ K T+P YE VE V +
Sbjct: 185 VCVLESHYSPVTALAFSPDGHTLVSSGRDKICSVWDLQEQKVKRTIPVYEAVEGVVLLS- 243
Query: 241 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFE 299
GSA Y++ +K S +H +T G +G++R+W++ S+ C++ Q D + E
Sbjct: 244 GSA------DYSEMGVK----SDALHLVTAGSKGVLRVWDSSSSRCVFTQTLPDASSHTE 293
Query: 300 MDDS----KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355
+D+ + G +LP L+ VTA+ +LLY T P L + ++ VGYN++
Sbjct: 294 DEDAEDEERLGLLQLLLLPRTGRLITVTAEHNILLYQT---PT----LAVQQQFVGYNDD 346
Query: 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415
+LD+KF+G+++ ++AVATN Q++V++LS+ SC +L GH++ +L +D S +
Sbjct: 347 VLDVKFVGKDDTHIAVATNSSQLKVFELSTNSCQ-ILHGHTDTILSIDVFRKGS---MFA 402
Query: 416 TGSKDNSVRLW--D-SESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471
T +KD SVR+W D S R CV GTGH AVG++A S+ Q F+VSGS D T+KVW
Sbjct: 403 TCAKDKSVRVWRMDVSSGRVHCVAQGTGHSNAVGSIACSRMKQQFVVSGSQDCTVKVWDL 462
Query: 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531
+ AE M +KA++ AH KD+NS+ V+PND L+ +GSQDRTA +W L DL +
Sbjct: 463 PETTG-AEGVMMMKARSTERAHEKDVNSVCVSPNDKLLASGSQDRTAKLWALSDLRLLGV 521
Query: 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591
RGH+RG+WSV+FSPVDQ++ +AS D +++IWSI D SCLKTFEGH +SVL+ F++RG
Sbjct: 522 CRGHRRGVWSVQFSPVDQILGSASADGSVRIWSIQDFSCLKTFEGHDASVLKIIFVSRGT 581
Query: 592 QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
Q+VS G+DGLVKLWT++T EC+ T D H+DK+WAL G + E+ TG +D+ + +W D
Sbjct: 582 QLVSSGSDGLVKLWTIKTNECVRTLDAHQDKVWALHGGCRDELMVTGSADSTITVWTD 639
|
|
| UNIPROTKB|F1Q065 TBL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
Identities = 188/458 (41%), Positives = 277/458 (60%)
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
+S +HF+T G++G++R+W A S C+Y Q + ++G T T+ S L
Sbjct: 253 KSKGLHFLTAGDQGLLRVWEAASGQCVYAQP--------QPPGPRQGLTHCTLAQSAGLL 304
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
L VT D LLLY + L L K+ GY+EE+LD++FLG E+ ++ VA+N ++
Sbjct: 305 LSVTTDHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPEDSHIVVASNSPSLK 357
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW--DSESR-CCVGV 436
V++L +M+C +L GH++IVL LD G+ L + +KD S+ +W + R CV
Sbjct: 358 VFELQTMTCQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSICIWRMNKAGRVACVAQ 413
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD------GLSDDAEQPMNLKAKAVV 490
G+GH +VG + S+ + FLV+GS D T+K+W G + D+ P+ L+A+A
Sbjct: 414 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPIPEALLSKGTAPDSG-PILLQAQATQ 472
Query: 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550
H KDINS+AVAPND L+ TGSQDRTA +W LP + F GH+RG+W V+FSP+DQV
Sbjct: 473 RCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQV 532
Query: 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS--CGADGLVKLWTVR 608
+ TAS D TIK+W++ D SCLKTFEGH +SVL+ F++RG Q++S G+DGLVKLWT++
Sbjct: 533 LATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGTQLLSRPSGSDGLVKLWTIK 592
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLR 668
EC+ T D HEDK+W L + + TG SD+ V LW D T V++
Sbjct: 593 NNECVKTLDAHEDKVWGLHCSRLDDRALTGASDSCVILWKDVTEEEQSEEQARREEEVVK 652
Query: 669 GQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
QEL+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 653 QQELDNLLYEKRYLRALGLAISLDRPHTVLTVIQAIRR 690
|
|
| UNIPROTKB|F1MNS4 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
Identities = 188/455 (41%), Positives = 274/455 (60%)
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
+S +HF+T G++G +R+W A S C++ Q+ + R T T+ + L
Sbjct: 256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
L VTAD LLLY L L K+ GY+EE+LD++FLG E+ ++ VA+N ++
Sbjct: 308 LSVTADHNLLLYDA-------HSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 436
V+DL + +C +L GH++IVL LD G+ L + +KD S+R+W S CV
Sbjct: 361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
G+GH +VG + S+ + FLV+GS D T+K+W LS P+ L+A+A
Sbjct: 417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQR 476
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
H KDINS+AVAPND L+ TGSQDRTA +W LP + TF GH+RG+W V+FSP+DQV+
Sbjct: 477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++ E
Sbjct: 537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
C+ T D HEDK+W L + + TG SD+ V LW D T V++ QE
Sbjct: 597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656
Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
L+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
|
| UNIPROTKB|Q2KJJ5 TBL3 "Transducin beta-like protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 2.7e-141, Sum P(2) = 2.7e-141
Identities = 188/455 (41%), Positives = 274/455 (60%)
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
+S +HF+T G++G +R+W A S C++ Q+ + R T T+ + L
Sbjct: 256 KSAGLHFLTAGDQGALRVWEAASGRCVHAQQ--------RLRGPGRELTHCTLAHAAGLL 307
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
L VTAD LLLY L L K+ GY+EE+LD++FLG E+ ++ VA+N ++
Sbjct: 308 LSVTADHNLLLYDA-------RSLRLRKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW---DSESRCCVGV 436
V+DL + +C +L GH++IVL LD G+ L + +KD S+R+W S CV
Sbjct: 361 VFDLQTSACQ-ILHGHTDIVLALDV--FRKGR-LFASCAKDQSIRVWRMNKSGEVACVAQ 416
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
G+GH +VG + S+ + FLV+GS D T+K+W LS P+ L+A+A
Sbjct: 417 GSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQATQH 476
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
H KDINS+AVAPND L+ TGSQDRTA +W LP + TF GH+RG+W V+FSP+DQV+
Sbjct: 477 CHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVL 536
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGL+KLWT++ E
Sbjct: 537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNE 596
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
C+ T D HEDK+W L + + TG SD+ V LW D T V++ QE
Sbjct: 597 CVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLWKDVTEAEQAEEQAKREEQVVKQQE 656
Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
L+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
|
| RGD|1305142 Tbl3 "transducin (beta)-like 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 184/452 (40%), Positives = 278/452 (61%)
Query: 265 IHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323
+HF+T G++GI+R+W A S C+Y Q +M ++ T T+ + LL VT
Sbjct: 260 LHFLTAGDQGILRVWEAASGQCVYTQP--------QMSGLRQELTHCTLARAAGLLLTVT 311
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD LLLY + L L K+ GY+EE+LD++FLG + ++ VA+N ++V++L
Sbjct: 312 ADHNLLLY-------EARSLQLQKQFAGYSEEVLDVRFLGPNDSHIIVASNSPCLKVFEL 364
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGH 440
+++C +L GH++IVL LD G L + +KD S+R+W CV G+GH
Sbjct: 365 QTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWRMNKAGQVACVAQGSGH 420
Query: 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL-----SDDAEQPMNLKAKAVVAAHG 494
+VG + S+ ++FLV+GS D T+K+W + L + D + + L+A++ H
Sbjct: 421 THSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALPSKNTASDGDL-IPLQAQSTQRCHD 479
Query: 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
KDINSLAV+PND L+ TGSQDRTA +W LP + F GH+RG+W+V+FSP DQV+ TA
Sbjct: 480 KDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWNVQFSPTDQVLATA 539
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
S D TIK+W++ D SCLKTFEGH +SVL+ +F++RGAQ++S G+DGL+KLWT+++ EC+
Sbjct: 540 SADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGAQLLSSGSDGLLKLWTIKSNECVR 599
Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELEN 674
T D HEDK+W L + + TGGSD+ + LW D T V++ QEL+N
Sbjct: 600 TLDAHEDKVWGLHCSRLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDN 659
Query: 675 AVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
+ + Y +A+ +A L RPH + + ++ R
Sbjct: 660 LLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
|
| MGI|MGI:2384863 Tbl3 "transducin (beta)-like 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
Identities = 186/455 (40%), Positives = 280/455 (61%)
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
+S +HF+T G++GI+R+W A S C+Y Q +M ++ T T+ + L
Sbjct: 256 KSSGLHFLTAGDQGILRVWEAASGQCVYTQP--------QMPGLRQELTHCTLARAADLL 307
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
L VTAD LLLY + L L K+ GY+EE+LD++FLG + ++ VA+N ++
Sbjct: 308 LTVTADHNLLLY-------EAHSLQLQKQFAGYSEEVLDVRFLGPSDSHIVVASNSPCLK 360
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 436
V++L +++C +L GH++IVL LD G L + +KD S+R+W CV
Sbjct: 361 VFELQTLACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSIRIWKMNKAGQVACVAQ 416
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF-DGL---SDDAEQ-PMNLKAKAVVA 491
G+GH +VG + S+ ++FLV+GS D T+K+W + L S A+ P+ L+A+
Sbjct: 417 GSGHTHSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRR 476
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
H KDINSLAV+PND L+ TGSQDRTA +W LP + F GH+RG+W+V+FSP DQV+
Sbjct: 477 CHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVL 536
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG+Q++S G+DGL+KLWT+++ E
Sbjct: 537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNE 596
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
C+ T D HEDK+W L + + TGGSD+ + LW D T V++ QE
Sbjct: 597 CVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQE 656
Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
L+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
|
| UNIPROTKB|Q12788 TBL3 "Transducin beta-like protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 186/455 (40%), Positives = 270/455 (59%)
Query: 261 RSLEIHFITVGERGIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319
+S ++F+T G++G +R+W A S C+Y Q E+ TA VL +
Sbjct: 256 KSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGP-GQELTHCTLAHTAGVVLTA---- 310
Query: 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379
TAD LLLY + L L K+ GY+EE+LD++FLG E+ ++ VA+N ++
Sbjct: 311 ---TADHNLLLY-------EARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK 360
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGV 436
V++L + +C +L GH++IVL LD G L + +KD SVR+W CV
Sbjct: 361 VFELQTSACQ-ILHGHTDIVLALDV--FRKGW-LFASCAKDQSVRIWRMNKAGQVMCVAQ 416
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ---PMNLKAKAVVA 491
G+GH +VG V S+ ++FLV+GS D T+K+W LS + P+ L+A+
Sbjct: 417 GSGHTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQR 476
Query: 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551
H KDINS+A+APND L+ TGSQDRTA +W LP + F GH+RG+W V+FSP+DQV+
Sbjct: 477 CHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVL 536
Query: 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611
TAS D TIK+W++ D SCLKTFEGH +SVL+ +F++RG Q++S G+DGLVKLWT++ E
Sbjct: 537 ATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNE 596
Query: 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQE 671
C+ T D HEDK+W L + + TG SD+ V LW D T V+R QE
Sbjct: 597 CVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQE 656
Query: 672 LENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
L+N + + Y +A+ +A L RPH + + ++ R
Sbjct: 657 LDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRR 691
|
|
| DICTYBASE|DDB_G0276283 utp13 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 252/727 (34%), Positives = 412/727 (56%)
Query: 3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT 62
S LK + + + + GG L +S D FI G I I+D + ++ S IE SDT
Sbjct: 31 SRKLKTVFKPDYEIGSLFTGGSLRISEDSKFIVSQAGYEIKIIDTEHGTVISKIE--SDT 88
Query: 63 -ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121
I+ ALSP+++ + + +I+ + + ++ WKGH+GP + H SG ++A+A
Sbjct: 89 KISTFALSPNNEEILIGCSNLQIKQYRIEDQSLVKIWKGHEGPINEIDIHSSGNIVASAS 148
Query: 122 ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181
+D+ V VWD++ G+CTH F+ H VV+ + FHP K L + D +RV+DL+ K+CV
Sbjct: 149 SDKTVKVWDLEKGYCTHNFQ-HDDVVTMLKFHPTLLK--LVTVCLDLNIRVYDLVTKECV 205
Query: 182 ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241
L H S+++ + ++ G LIS+GRDKV+N+WD+ + K T+P Y+ + + +P
Sbjct: 206 I-LTNHLSQISGITFSNSGKELISSGRDKVLNVWDMLSKNPKKTIPIYQELGGIITLPKE 264
Query: 242 SAFDSFL--SSYNQQTIKKKRRSLEIHF----------ITVGERGIVRMWNADSA-CLYE 288
S ++S S + I++K +++ H I +G ++R W ++ C++
Sbjct: 265 S-YNSLPENSKIKIEKIREKVKTMAAHADKIKNGDDITIVIGGEEVLRAWCTETGECIWN 323
Query: 289 QKSSDVTISFEMDDSKRG---FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345
++ + + DD + +T ++++ + ++ +T++ LL+Y + E++ E+I
Sbjct: 324 DQNIEFKKKTDNDDKDKTDTLYTISSIINNKDKIISITSEHNLLIYNGKTL-ERQGEII- 381
Query: 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405
GYN+EI+D+K++ ++ + VATN +++ YDL++ VL GH ++V+ +D
Sbjct: 382 -----GYNDEIIDIKYINDDN--IIVATNSNEIKTYDLNTKRAQ-VLRGHEDLVMSVDVS 433
Query: 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSD 463
A GK I++GS+D S +WD E + + TGH G + VA KK F ++ S D
Sbjct: 434 A--DGKH-IISGSRDKSAMIWDLEKKESIAQLTGHTGVISCVALPKKPSTSMFAITASDD 490
Query: 464 HTIKVW------SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517
TIK+W S G D ++ + A AH KDINS+++APND + T SQD
Sbjct: 491 RTIKLWKGFSTTSSSGGDDSKKKDKKISASVTKIAHEKDINSISIAPNDKIFATASQDSY 550
Query: 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 577
+W + +L + + + H+RG+W VEFSP+DQ +T S D TIKIWS+SD +CLKT EGH
Sbjct: 551 VKLWNVNNLEPITSIKAHRRGVWHVEFSPIDQCFLTCSADGTIKIWSLSDYTCLKTLEGH 610
Query: 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637
SVL+ASF++ G QIVS ++GL+KLW ++T EC+ T++ HE KIWAL+V K E F T
Sbjct: 611 KGSVLKASFISFGMQIVSVASEGLIKLWNIKTNECLNTFEGHESKIWALSVAKDQERFIT 670
Query: 638 GGSDALVNLWHDSTXXXXXXXXXXXXXXVLRGQELENAVLDADYTKAIQVAFELRRPHKL 697
GGSD+ + W D T VL Q L+ A+ DY A+++A L +P +
Sbjct: 671 GGSDSKLIAWKDHTEIELEIQKKKEENQVLYKQHLDTAIRKKDYYSALKLALVLDQPRQT 730
Query: 698 FELFASV 704
+F S+
Sbjct: 731 LNIFNSM 737
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8C4J7 | TBL3_MOUSE | No assigned EC number | 0.3949 | 0.9461 | 0.8339 | yes | no |
| Q2KJJ5 | TBL3_BOVIN | No assigned EC number | 0.4073 | 0.9490 | 0.8375 | yes | no |
| Q12788 | TBL3_HUMAN | No assigned EC number | 0.3960 | 0.9490 | 0.8292 | yes | no |
| Q05946 | UTP13_YEAST | No assigned EC number | 0.3215 | 0.9376 | 0.8102 | yes | no |
| Q9USN3 | UTP13_SCHPO | No assigned EC number | 0.3291 | 0.9376 | 0.8519 | yes | no |
| Q5U2W5 | TBL3_RAT | No assigned EC number | 0.3977 | 0.9461 | 0.835 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 706 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-61 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-44 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-42 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-40 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-37 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-37 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-29 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-29 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-08 | |
| pfam08625 | 138 | pfam08625, Utp13, Utp13 specific WD40 associated d | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 4e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 8e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 1e-61
Identities = 96/303 (31%), Positives = 150/303 (49%), Gaps = 15/303 (4%)
Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404
L + L G+ + + F + + LA + ++V+DL + L GH+ V +
Sbjct: 1 LRRTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
A + + +GS D ++RLWD E+ CV TGH V +VAFS + L S S D
Sbjct: 60 SADGT---YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDK 115
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524
TIKVW + K + H +NS+A +P+ + V + SQD T +W L
Sbjct: 116 TIKVWDVE----------TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
Query: 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584
V T GH + SV FSP + ++++S D TIK+W +S G CL T GH + V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225
Query: 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644
+F G + S DG +++W +RTGEC+ T H + + +LA + A+G +D +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
Query: 645 NLW 647
+W
Sbjct: 286 RIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 3/204 (1%)
Query: 25 LVVSSDGSFIACACGES-INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
+ S+DG+++A + I + DL T+ G + ++++A SPD ++L SS +
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT 116
Query: 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
I+VWD+ T KCL + +GH +A P G +A++ D + +WD+ G C GH
Sbjct: 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
G V+S+ F PD +K L S S D T+++WDL KC+ TL H + V S+A + DG L
Sbjct: 177 TGEVNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 204 ISAGRDKVVNLWDLRDYSCKLTVP 227
S D + +WDLR C T+
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLS 258
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-43
Identities = 71/199 (35%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 28 SSDGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S DG +A G +I + DL + T++G + + +A S D L S + IR+
Sbjct: 18 SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
WDL T +C+R+ GH +A P G +L+++ D+ + VWDV+ G C +GH
Sbjct: 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206
V+S+ F PD + S S D T+++WDL KCVATL H V S+A + DG L+S+
Sbjct: 138 VNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195
Query: 207 GRDKVVNLWDLRDYSCKLT 225
D + LWDL C T
Sbjct: 196 SSDGTIKLWDLSTGKCLGT 214
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 8e-43
Identities = 88/338 (26%), Positives = 140/338 (41%), Gaps = 53/338 (15%)
Query: 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH 153
R+ KGH G +A P G LLAT D + VWD++ G KGH G V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
D L SGS D T+R+WDL +CV TL H S V+S+A + DG L S+ RDK +
Sbjct: 61 ADGTY--LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 214 LWDLRDYSCKLTVPTYEM-VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272
+WD+ C T+ + V +V P G F+
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDG------------------------TFVASSS 154
Query: 273 R-GIVRMWNADSA-CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+ G +++W+ + C+ + + P + LL ++D + L
Sbjct: 155 QDGTIKLWDLRTGKCVA-----------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ-VQVYDLSSMSCS 389
+ L G+ + + F + YL + + + ++V+DL + C
Sbjct: 204 WDL-------STGKCLGTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECV 254
Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
L+GH+ V L A S + +GS D ++R+WD
Sbjct: 255 QTLSGHTNSVTSL---AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-42
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 26 VVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
V S I + +I + D+ +T+ G +D + ++A SPD + SS
Sbjct: 99 VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
I++WDL T KC+ + GH G +A P G L ++ +D + +WD+ G C +GH
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
+ V+S+ F PD LL SGS+D T+RVWDL +CV TL H + VTS+A + DG L
Sbjct: 219 ENGVNSVAFSPDGY--LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276
Query: 204 ISAGRDKVVNLWD 216
S D + +WD
Sbjct: 277 ASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 6/206 (2%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
+ T++G + +T +A SPD KLL + I+VWDL T + LR+ KGH GP +A
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
G LA+ +D+ + +WD++ G C GH VSS+ F P D +L S S D T++V
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKV 119
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM- 231
WD+ KC+ TL H V S+A + DG+ + S+ +D + LWDLR C T+ +
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179
Query: 232 VEAVCAIPPGSAFDSFLSSYNQQTIK 257
V +V P G LSS + TIK
Sbjct: 180 VNSVAFSPDGE---KLLSSSSDGTIK 202
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-37
Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 40/303 (13%)
Query: 266 HFITVGERGIVRMWNADS----ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321
T G +++W+ ++ L ++ L
Sbjct: 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA--------------SADGTYLAS 68
Query: 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381
++D+ + L+ + E + + L G+ + + F + + L+ ++ + ++V+
Sbjct: 69 GSSDKTIRLWDL-----ETGECV--RTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVW 120
Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
D+ + C L GH++ V A S + + S+D +++LWD + CV TGH
Sbjct: 121 DVETGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
G V +VAFS + L S SSD TIK+W K + H +NS+A
Sbjct: 178 GEVNSVAFSPDGEKLL-SSSSDGTIKLWDLSTG----------KCLGTLRGHENGVNSVA 226
Query: 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
+P+ L+ +GS+D T VW L V T GH + S+ +SP + + + S D TI+
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Query: 562 IWS 564
IW
Sbjct: 287 IWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 9e-37
Identities = 98/323 (30%), Positives = 159/323 (49%), Gaps = 18/323 (5%)
Query: 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392
TV++ + L + L G++E + L F + + + ++ ++++DL + L
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSK 451
AGH++ V L G +LI +GS D ++RLWD + + +GH +V +FS
Sbjct: 195 AGHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP 251
Query: 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511
+ L SGSSD TI++W S ++ H + S+A +P+ L+ +
Sbjct: 252 -DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAFSPDGKLLAS 301
Query: 512 GSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG 568
GS D T +W L L+S +T +GH+ + S+ FSP +V S D TI++W + G
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361
Query: 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
LKT EGH S+VL SF G + S DG V+LW + TG + D H ++ +L
Sbjct: 362 KPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420
Query: 629 GKKTEMFATGGSDALVNLWHDST 651
+ A+G SD + LW T
Sbjct: 421 SPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 136 bits (342), Expect = 3e-34
Identities = 112/462 (24%), Positives = 190/462 (41%), Gaps = 55/462 (11%)
Query: 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
LL + D+ V + DL L H +TS+A + DG L+S D + LW
Sbjct: 37 ESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW 92
Query: 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275
DL + + + + S + I + G
Sbjct: 93 DLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135
Query: 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL-CVTADQQLLLYTTV 334
V++W+ S+ + ++ T+ P + L + D + L+
Sbjct: 136 VKLWD---------LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186
Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLA 393
L G+ + + L F + +A ++ ++++DLS+ L+
Sbjct: 187 TGKPLST-------LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239
Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKK 452
GHS+ V+ + S L+ +GS D ++RLWD S + +GH +V +VAFS
Sbjct: 240 GHSDSVVS----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCT 511
L SGSSD T+++W + L + + H ++SL+ +P+ LV
Sbjct: 296 G-KLLASGSSDGTVRLWDLETGK--------LLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571
GS D T +W L + T GH + SV FSP +VV + S D T+++W +S GS L
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI 613
+ +GHTS V F G + S +D ++LW ++T
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (339), Expect = 7e-34
Identities = 107/461 (23%), Positives = 182/461 (39%), Gaps = 49/461 (10%)
Query: 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99
S + S ++ +L S LL + + + DLS+L +
Sbjct: 7 TSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL----LLR 62
Query: 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT--HYFKGHKGVVSSILF-HPDT 156
GH+ +A P G LL + +D + +WD+D G H VS + PD
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 157 DKSLLFSGSDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNL 214
+ LL S S D TV++WDL K + TL+ H VTS+A + DG L S D + L
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 215 WDLRDYSCKLTVPTYEMVEAVCAIPP-------GSAFDSFLSSYNQQTIKKKRRSLEIH- 266
WDLR T+ + + A P + D + ++ T K R +L H
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Query: 267 -------------FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313
+ G +R+W+ S ++ + +
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLR---------SSSSLLRTLSGHSSSVLSVAFS 293
Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
P + L ++D + L+ + +L+ S L G+ + L F + ++ +
Sbjct: 294 PDGKLLASGSSDGTVRLWDL-----ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348
Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
+ ++++DL + L GHS + + + S ++ +GS D +VRLWD +
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNV----LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404
Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474
+ GH V ++ FS L SGSSD+TI++W
Sbjct: 405 LRNLDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 1e-33
Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 21/336 (6%)
Query: 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384
+ +LL + + + S L G+ + I + F + + L ++ ++++DL
Sbjct: 37 ESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFS-PDGELLLSGSSDGTIKLWDLD 95
Query: 385 SMSCSY--VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHM 441
+ + H V L + IL+ + S D +V+LWD + + GH
Sbjct: 96 NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
+V ++AFS + S D TIK+W K + +A H ++SLA
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLR----------TGKPLSTLAGHTDPVSSLA 205
Query: 502 VAPNDS-LVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559
+P+ L+ +GS D T +W L + T GH + S FSP ++ + S D T
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGT 264
Query: 560 IKIWSI-SDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TY 616
I++W + S S L+T GH+SSVL +F G + S +DG V+LW + TG+ ++ T
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 617 DKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDST 651
HE + +L+ + +GGS D + LW T
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-29
Identities = 101/446 (22%), Positives = 180/446 (40%), Gaps = 67/446 (15%)
Query: 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLD-KHFSRVTSMAIT 197
+GH+ ++SI F PD LL SGS D T+++WDL +K + +L+ H S V+ +A++
Sbjct: 61 LRGHEDSITSIAFSPD--GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 198 S-DGSTLISAG--RDKVVNLWDLRDYSCKLTV--PTYEMVEAVCAIPPGSAFDSFLSSYN 252
S DG++++ A D V LWDL + E V ++ P
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP------------- 165
Query: 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312
++ G +++W+ + + ++
Sbjct: 166 ---------DGKLLASGSSLDGTIKLWDLRTGKPLST----------LAGHTDPVSSLAF 206
Query: 313 LPSNQG-LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371
P + ++D + L+ + L + + LA
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--------SGHSDSVVSSFSPDGSLLAS 258
Query: 372 ATNIEQVQVYDL-SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430
++ ++++DL SS S L+GHS VL + A S L+ +GS D +VRLWD E+
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AFSPDGKLLASGSSDGTVRLWDLET 315
Query: 431 RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488
+ T GH G V +++FS + GS D TI++W
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE------- 368
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548
++ S++ +P+ +V +GS D T +W L + GH + S++FSP
Sbjct: 369 ----GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424
Query: 549 QVVITASGDKTIKIWSISDGSCLKTF 574
+ + + S D TI++W + +F
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 3/151 (1%)
Query: 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
+ S DG+F+A + + +I + DL +T+ G + + ++A SPD + L SS
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200
Query: 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
I++WDLST KCL + +GH+ +A P G LLA+ D + VWD+ G C GH
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH 260
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
V+S+ + PD L SGS D T+R+WD
Sbjct: 261 TNSVTSLAWSPDG--KRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 3e-29
Identities = 100/415 (24%), Positives = 165/415 (39%), Gaps = 51/415 (12%)
Query: 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALAL---SPDDKLLFS--S 78
+ S DG + + +I + DL N G + L SPD + S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 79 GHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFC 136
+++WDLST K +R+ +GH +A P G LLA+ D + +WD+ G
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196
GH VSS+ F PD L+ SGS D T+R+WDL K + + S +
Sbjct: 191 LSTLAGHTDPVSSLAFSPD-GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249
Query: 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256
+ DGS L S D + LWDLR S L + +V ++ +F
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSV-------AFSPDGKL--- 298
Query: 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316
+ G VR+W+ ++ L + + + ++ + P
Sbjct: 299 ----------LASGSSDGTVRLWDLETGKLLSSLT--------LKGHEGPVSSLSFSPDG 340
Query: 317 QGLL-CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375
L+ + D + L+ K S +L + F + + ++ +
Sbjct: 341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--------NVLSVSFS-PDGRVVSSGSTD 391
Query: 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430
V+++DLS+ S L GH+ V LD S + +GS DN++RLWD ++
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLD---FSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 100 GHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTH-------YFKGHKGVVSSIL 151
G +GP I +A +P L TA D ++ W + T + +GH V +
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211
FHP ++L S D V VWD+ K V + H ++TS+ DGS L + +DK
Sbjct: 133 FHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191
Query: 212 VNLWDLRD 219
+N+ D RD
Sbjct: 192 LNIIDPRD 199
|
Length = 493 |
| >gnl|CDD|204007 pfam08625, Utp13, Utp13 specific WD40 associated domain | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 670 QELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706
QEL N + + DY++A+ +A L PH+L + SV
Sbjct: 2 QELSNLLREGDYSEALLLALTLDHPHRLLNVLKSVIE 38
|
Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end. Length = 138 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-07
Identities = 23/41 (56%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
G KGH G V+S+ F PD +LL SGSDD TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
+ + L++ KGH GP +A P G LA+ D + +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-07
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
+ T +GH + SV FSP + + + S D TIK+W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-07
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564
+ T +GH + SV FSP ++ + S D T+++W
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-07
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
KGH G V+S+ F PD L SGSDD T+++WD
Sbjct: 4 LLKTLKGHTGPVTSVAFSPD--GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
K LR+ KGH GP +A P G LLA+ D V VWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
G LKT +GHT V +F G + S DG +KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-06
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
K + TL H VTS+A + DG+ L S D V +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
G L+T +GHT V +F G + S DG V++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-06
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
+ + TL H VTS+A + DG L S D + LWD
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 534 GHKRGIWSVEFSPVD-QVVITASGDKTIKIWSI-SDG------SCLKTFEGHTSSVLRAS 585
G + I V F+P D Q + TAS D TI W I +G + +GHT V S
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 586 FLTRGAQIV-SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644
F ++ S GAD +V +W V G+ + H D+I +L + T D +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
Query: 645 NL 646
N+
Sbjct: 193 NI 194
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-05
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
+ GH G V +VAFS N L SGS D T++VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 77 SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGM---ACHPSGGLLATAGADRKVLVWDVDG 133
SS ++VWD++ + + K H+ + + P+ LLA+ D V +W ++
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQ 607
Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVT 192
G K K + + F ++ +SL F GS D V +DL K + T+ H S+
Sbjct: 608 GVSIGTIKT-KANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLCTMIGH-SKTV 664
Query: 193 SMAITSDGSTLISAGRDKVVNLWDL 217
S D STL+S+ D + LWDL
Sbjct: 665 SYVRFVDSSTLVSSSTDNTLKLWDL 689
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 9e-05
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
S + GH G V +VAFS +L SGS D TIK+W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88
+ T++G + +T++A SPD LL S +RVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 2e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
L GH+ V A S L+ +GS D +VR+WD
Sbjct: 1 GKLLRTLKGHTGPVTS---VAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
S L GH+ V A S + +GS D +++LWD
Sbjct: 1 SGELLKTLKGHTGPVTS---VAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 4e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88
T++G + +T++A SPD K L S I++WD
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 8e-04
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
K + H + S+A +P+ +L+ +GS D T VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 8e-04
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
+GE + T H + ++A + A+G D + LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 8e-04
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA--------CH 111
S+ + A+ D + ++G +++I++++ ++ ++ + P + +A C
Sbjct: 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESI--IKDGRDIHYPVVELASRSKLSGICW 540
Query: 112 PS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169
S +A++ + V VWDV K H+ V SI + D +LL SGSDD +
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDY-SSADPTLLASGSDDGS 599
Query: 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRD 219
V++W + + T+ K + + + S+ G +L D V +DLR+
Sbjct: 600 VKLWSINQGVSIGTI-KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498
GH VG V+F N L S +D + VW D E+ KA V+ H I
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVW-------DVERG---KAVEVIKCHSDQIT 172
Query: 499 SLAVAPNDSLVCTGSQDRTACVW--RLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVIT 553
SL + SL+CT S+D+ + R +VS V +R +W+ + + +
Sbjct: 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232
Query: 554 ASGDKTIKIWSISD 567
S + I +W
Sbjct: 233 KSQQRQIMLWDTRK 246
|
Length = 493 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.001
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
+ + + H + S+A +P+ + +GS D T +W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 29 SDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
S + + ++ + DLS S+ ++G + +T+L SPD K L S IR+
Sbjct: 379 SPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438
Query: 87 WDLSTLKCLRSW 98
WDL T S+
Sbjct: 439 WDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 29/199 (14%)
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
LA S++ C S K + + + + V++WD V H V ++ +S
Sbjct: 529 LASRSKLS---GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585
Query: 452 KLQNFLVSGSSDHTIKVWSFD-GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS--L 508
L SGS D ++K+WS + G+S +K KA + P++S
Sbjct: 586 ADPTLLASGSDDGSVKLWSINQGVSIG-----TIKTKANICC--------VQFPSESGRS 632
Query: 509 VCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSIS 566
+ GS D + L + + + T GH + + V F VD ++++S D T+K+W +S
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDLS 690
Query: 567 ------DGSCLKTFEGHTS 579
+ + L +F GHT+
Sbjct: 691 MSISGINETPLHSFMGHTN 709
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.004
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
G+ + T H + ++A + A+G D V +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.98 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.98 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.98 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.98 | |
| PTZ00421 | 493 | coronin; Provisional | 99.98 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.98 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.92 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.92 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.87 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.87 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.84 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.83 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.83 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.83 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.81 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.78 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.72 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.72 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.71 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.71 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.71 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.68 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.67 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.65 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.65 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.64 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.63 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.61 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.56 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.56 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.56 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.54 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.52 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.5 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.5 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.49 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.47 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.47 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.42 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.36 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.36 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.32 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.32 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.3 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.29 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.26 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.26 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.22 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.21 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.15 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.12 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.1 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.09 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.08 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.08 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.07 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.05 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.05 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.04 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.01 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.01 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 99.0 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.0 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.98 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.95 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.9 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.89 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.88 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.87 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.83 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.82 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.81 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.8 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.76 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.75 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.74 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.74 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.73 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.72 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.67 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.63 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.58 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.57 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.5 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.48 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.48 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.41 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.41 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.41 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.38 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.28 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.26 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.24 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.23 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.23 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.21 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.2 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.19 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 98.18 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.17 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.14 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.13 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.11 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.06 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.05 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.03 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.02 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.99 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.98 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.93 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.87 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.86 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.84 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.84 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.84 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.82 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.8 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.78 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.77 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.73 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.69 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.68 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.65 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.59 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.56 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.5 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.48 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.48 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.47 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.42 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.39 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.34 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.32 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.31 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.11 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.08 | |
| PRK10115 | 686 | protease 2; Provisional | 97.02 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.95 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.89 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.84 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.83 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.81 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.76 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.76 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.67 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.52 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.48 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.46 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.38 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.24 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.21 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.15 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.13 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 96.11 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.1 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.06 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.99 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.98 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.94 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.91 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.79 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.77 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.73 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.65 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.5 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.48 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.44 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.41 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.26 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.22 | |
| PRK10115 | 686 | protease 2; Provisional | 95.16 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 95.04 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.03 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.99 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.97 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.81 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.8 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 94.73 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.73 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.65 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.58 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.57 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.43 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.39 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.24 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.2 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.18 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.15 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.73 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.72 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.7 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.67 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.48 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.47 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.4 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.39 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.35 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 93.23 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.04 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.02 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.99 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.73 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.73 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.66 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 92.53 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.25 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.02 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 91.92 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.74 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.21 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 91.09 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 90.98 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.83 | |
| PLN02153 | 341 | epithiospecifier protein | 90.48 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.09 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 89.89 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.83 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 89.78 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.72 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.58 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 89.52 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.43 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.39 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 89.29 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 88.87 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 88.77 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.71 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.43 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 88.19 | |
| PLN02153 | 341 | epithiospecifier protein | 87.56 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 87.12 |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-92 Score=651.11 Aligned_cols=667 Identities=47% Similarity=0.771 Sum_probs=610.3
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeE-EEeec-CCCccEEEEEEccCCCEEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASI-KSTIE-GGSDTITALALSPDDKLLFSS 78 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~-~~~l~-~~~~~i~~l~~s~~~~~l~s~ 78 (706)
||++.+|+.|+....+.|+|++|.+++|++|+.|++.+++.|.+.|+.+++. +.... .....|++++++||+++|+++
T Consensus 1 ma~~~~Kk~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 1 MAPMTEKKSYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA 80 (775)
T ss_pred CCccchhhhhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe
Confidence 9999999999999999999999999999999999999999999999999988 33333 345689999999999999999
Q ss_pred eccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC
Q 005254 79 GHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD 157 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (706)
+....+++|++++++.++.++. |.+||..++|+|.+..|++|+.|+.++|||+..+.+.+.|++|.+.|..+.|+|+..
T Consensus 81 ~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 81 SRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred eccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence 9999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCCeEEEEECCCCee-EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKC-VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
..+|++|..|+++++||+++... +..+..|.+.|++++|++|+..+++++.|..+.+||+.+.+..+.++..+.+.++.
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv 240 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVV 240 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEE
Confidence 88999999999999999986554 78889999999999999999999999999999999999999999999999999998
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
..+++.. .....+++.|.+|.++.|+.+++........+. ...+..+...+..
T Consensus 241 ~l~~~~~------------------~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~---------~~e~~~~~~~~~~ 293 (775)
T KOG0319|consen 241 RLREELG------------------GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD---------SEEIDHLLAIESM 293 (775)
T ss_pred EechhcC------------------CcceEEEEecCCceEEEEecccchhhhhhccCC---------chhhhcceecccc
Confidence 8777211 113489999999999999999985443332221 2227888889999
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
..+++.+.++++.+|+.. ++...+.+.+++++|.+++|..++.++++++++.+.+++|+..+..+. .+.+|.
T Consensus 294 ~~~l~vtaeQnl~l~d~~-------~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~ 365 (775)
T KOG0319|consen 294 SQLLLVTAEQNLFLYDED-------ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT 365 (775)
T ss_pred CceEEEEccceEEEEEcc-------ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch
Confidence 999999999999999655 556778999999999999999999999999999999999999988887 999999
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+.+++ ....+ .++++|+.|.++++|.++++ .++....+|.+.|.+++++..+..++++++.|+++++|++.
T Consensus 366 e~vlSL~--~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 366 EAVLSLD--VWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred hheeeee--ecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 9999998 55555 55999999999999977443 34556678999999999999988999999999999999998
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
..++... +...........|...|++++++|+.+++|+|+.|++.+||+++......++.+|...|.++.|+|..+.++
T Consensus 443 ~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 443 KSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred Ccccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeE
Confidence 8433222 444445556678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCC
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 632 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 632 (706)
+++.|++|+||.+.+..|++++.||...|..+.|-.+|+.|++++.||.+++|++++++|+.++..|.+.|++++.++.+
T Consensus 522 T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccchhHhhheeeecCCcchHHHHHHhhhC
Q 005254 633 EMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELFASVCR 706 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (706)
.+++||+.||.|.+|.=.+....++...++++.++++++++..+.+.+|.+++.+++++.+|+.+|++++.+||
T Consensus 602 ~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r 675 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYR 675 (775)
T ss_pred ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-62 Score=449.81 Aligned_cols=581 Identities=22% Similarity=0.365 Sum_probs=477.1
Q ss_pred cccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEE
Q 005254 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
||+.|+.++.++.+|..++++|++||.-+++..++.+.++|+++++.....-.+...|++++.||+|.+|++..+.|...
T Consensus 1 Mk~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~ 80 (893)
T KOG0291|consen 1 MKTEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRAL 80 (893)
T ss_pred CccccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEE
Confidence 57899999999999999999999999999999999999999998876543445778999999999999999999999999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--------EEEEeeCCCCcEEEEEEcCCCC
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--------CTHYFKGHKGVVSSILFHPDTD 157 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~ 157 (706)
+-++.....++.+. .+.+|.++.|||||+++|++.. +.+.||...... ...++.+|...|.++.|+.|.+
T Consensus 81 lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr 158 (893)
T KOG0291|consen 81 LVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR 158 (893)
T ss_pred EEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc
Confidence 99999988888888 5689999999999999998864 779999875432 3355678999999999999877
Q ss_pred ceEEEEEecCCeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc--ceeeecCcceee
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS--CKLTVPTYEMVE 233 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~~~~~~~ 233 (706)
. +++|+.|..+++|+++..+. ...+.+|.+.|.+.-|..+...+++.+.||.+.+|.....- ....-..
T Consensus 159 ~--l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd----- 231 (893)
T KOG0291|consen 159 L--LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD----- 231 (893)
T ss_pred e--EEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc-----
Confidence 5 99999999999999987665 56788999999999999999999999999999999876431 0000000
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe-EEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI-VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
.+|. .......-++... -.+|.... ..-..+....+++..+
T Consensus 232 -----~eg~--------------------~d~~~~~~~Eek~~~~~~~k~~-------------k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 232 -----EEGS--------------------DDEEMDEDGEEKTHKIFWYKTK-------------KHYLNQNSSKVTAAAF 273 (893)
T ss_pred -----cccc--------------------ccccccccchhhhcceEEEEEE-------------eeeecccccceeeeec
Confidence 0000 0000000000000 00111000 0112223356788899
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec-CCcEEEEeCCCceeeEe
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~i~~~d~~~~~~~~~ 391 (706)
.+....++++-..|...+|.+.. ......+.-...+|..+.+.. .+.+++.++. -|++.+|+..+...+..
T Consensus 274 H~~t~~lvvgFssG~f~LyelP~-------f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 274 HKGTNLLVVGFSSGEFGLYELPD-------FNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cCCceEEEEEecCCeeEEEecCC-------ceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeee
Confidence 99999999999999999998874 445566666678888888876 6777777765 48999999999999999
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
.++|...+.+++ ++|+++. +++|++||.|++||..++-++.++..|++.|+++.|+..++ .+++.+-||+|+.||+
T Consensus 346 QQgH~~~i~~l~--YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 346 QQGHSDRITSLA--YSPDGQL-IATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDL 421 (893)
T ss_pred ccccccceeeEE--ECCCCcE-EEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeee
Confidence 999999999999 9999988 99999999999999999999999999999999999999987 8999999999999999
Q ss_pred cCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEEeeCCC-cEEEEeCCCccEEEEEeecCCcEEEEEEccCCC
Q 005254 472 DGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
.... ....+ ........|++..|.|.++++|+.|. .|.+|++++|+.+..+.+|.++|.+++|+|++.
T Consensus 422 kRYr----------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 422 KRYR----------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred cccc----------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 8653 22222 22334568899999999999999886 599999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCc-eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----------
Q 005254 550 VVITASGDKTIKIWSISDGS-CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---------- 618 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------- 618 (706)
.|++++.|.+|++||+-... .+.++. +...++.++|+|||+.|++++-||.|.+||...+..+..+.+
T Consensus 492 ~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~ 570 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE 570 (893)
T ss_pred eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccc
Confidence 99999999999999986553 444554 778899999999999999999999999999988776655432
Q ss_pred ----------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 619 ----------HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 619 ----------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
.....+.+++|+||.++++||....|++|++.++...+
T Consensus 571 ~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 571 TDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred cceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 23468899999999999999999999999999886544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=458.58 Aligned_cols=602 Identities=23% Similarity=0.392 Sum_probs=480.2
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeec--CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIE--GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG 107 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~--~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 107 (706)
.|++++......|.+||+++++....+. .-...|+|++-+|+..+||+|..||.|+||+..+.....++.+|+..|++
T Consensus 33 ~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~ 112 (888)
T KOG0306|consen 33 KGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT 112 (888)
T ss_pred CCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEE
Confidence 4999999888899999999996554432 33468999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 108 ~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
+.|+..|.+||+|+.|+.|.+||+-...-..++++|...|+.+-|..+.+ ++++.+.|+.|++||+++..+..+.-.|
T Consensus 113 l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~ 190 (888)
T KOG0306|consen 113 LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDH 190 (888)
T ss_pred EEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecc
Confidence 99999999999999999999999988888899999999999999987544 5999999999999999999999999999
Q ss_pred cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 188 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+.++++++.+ +.+++++.|+.+.+|++........ ....+.+...|. +......+.+.......+..+
T Consensus 191 r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~-----~~~~~s~~~~G~----~~rqsk~R~i~l~~d~s~r~~ 259 (888)
T KOG0306|consen 191 RGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKE-----TNRYISTKLRGT----FIRQSKGREINLVTDFSDRFL 259 (888)
T ss_pred cceEEEEEEec--ceEEEEecCCceEEEEeeccccccc-----ccccceeeccce----eeeccCCceeEEeecCcccEE
Confidence 99999999987 6899999999999999832111000 000000100010 011111112222333344577
Q ss_pred EEecCCCeEEEEECCCCeEEeeccC-----------------cc-------ccccccCCCccceeEEEEccCCCe--eEE
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSS-----------------DV-------TISFEMDDSKRGFTAATVLPSNQG--LLC 321 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~--l~~ 321 (706)
++-+.|..+.++.+........... .. ...+..-.....+.+..+.|.+.. .++
T Consensus 260 ~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv 339 (888)
T KOG0306|consen 260 VCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLV 339 (888)
T ss_pred EEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEE
Confidence 8888888888888766511100000 00 001111122344566666665543 355
Q ss_pred EeeCCceEEEEeeeccc--cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceE
Q 005254 322 VTADQQLLLYTTVEVPE--KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 399 (706)
...++.+.+|.+..... +...........+|...|.+++++. ++.++.....+.+.+|+..+.+++..+... .+
T Consensus 340 ~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~ 415 (888)
T KOG0306|consen 340 LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG--YI 415 (888)
T ss_pred EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc--cE
Confidence 58888888888876222 2223344456779999999999985 344555555689999999999999988765 44
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 479 (706)
.+. +|.|.++. +++|...|.+.+||+.+...+...++|.+.+.+++.+|++. .+++|+.|.+|++|++.-....+.
T Consensus 416 l~~--~Fvpgd~~-Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 416 LAS--KFVPGDRY-IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred EEE--EecCCCce-EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCc
Confidence 444 37777776 99999999999999999999999999999999999999988 799999999999999864332111
Q ss_pred cc---cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 480 QP---MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 480 ~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
.. ...... ........|.|+.+||||++|+++--|.++++|-+.+.+....+.+|.-||.++..|||++.++||+.
T Consensus 492 t~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 492 TQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred ccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 10 111111 22335677999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 005254 557 DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFA 636 (706)
Q Consensus 557 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 636 (706)
|.+|++|-++-|.|.+.+-+|...|.++.|.|....+++++.|+.|+-||-..-+.++.+.+|...|++++.+|+|.+++
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCchh
Q 005254 637 TGGSDALVNLWHDSTAA 653 (706)
Q Consensus 637 ~~~~dg~i~vw~~~~~~ 653 (706)
+++.|.+|++|.-..+.
T Consensus 651 s~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTDEI 667 (888)
T ss_pred eccCCceeEeeeccCcc
Confidence 99999999999987743
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=420.64 Aligned_cols=588 Identities=17% Similarity=0.227 Sum_probs=479.0
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH 80 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~ 80 (706)
|-.++|++.|+..|..++-.+. -+.-.|-|+.++++.+..+.+.++.+......+.+|..+++-..|||.|.|+|+|..
T Consensus 1 ms~~~lk~~~~~lPst~Rg~~~-~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~ 79 (603)
T KOG0318|consen 1 MSEYELKETFASLPSTERGVPI-IIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDV 79 (603)
T ss_pred CchhhhhhhccCCCcccCCcce-EeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCC
Confidence 7788999999999988884441 244558899999999999999999999988999999999999999999999999999
Q ss_pred cCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 81 SREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 81 d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
.|+|+|||....+ +..+++.-.++|..++|++|+++|++.++ ++..+++-+++|..+..+.+|...|.++.|-|.
T Consensus 80 sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps- 158 (603)
T KOG0318|consen 80 SGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS- 158 (603)
T ss_pred cCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC-
Confidence 9999999986633 34467778899999999999999998764 334555555678888999999999999999986
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec----Cccee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYEMV 232 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~----~~~~~ 232 (706)
+...+++|++|++|.+|+-...+...+++.|..-|.++.|+|||.++++++.||.+.+||-.+++.+..+. +...+
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 45579999999999999988888888899999999999999999999999999999999999999988886 45578
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
.++.++|++. ++++.+.|.++++||..+..+.......... ......+.+
T Consensus 239 falsWsPDs~-----------------------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v-------~dqqvG~lW 288 (603)
T KOG0318|consen 239 FALSWSPDST-----------------------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTV-------EDQQVGCLW 288 (603)
T ss_pred EEEEECCCCc-----------------------eEEEecCCceEEEEEeeccceEEEeecCCch-------hceEEEEEE
Confidence 9999999987 8999999999999999998665554333221 112223333
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
. ++.|+..+.+|.+.+++..... ......+|+..|.++..++ ++.++.+++.||.|.-|+..++..-...
T Consensus 289 q--kd~lItVSl~G~in~ln~~d~~-------~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 289 Q--KDHLITVSLSGTINYLNPSDPS-------VLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred e--CCeEEEEEcCcEEEEecccCCC-------hhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccc
Confidence 3 7889999999999999887543 4567889999999999988 4599999999999999999998876554
Q ss_pred -eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 -AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 -~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+|...|.+++ ... ... +++.+.|.++++.++.....-... -.......+++..+++. +++....++.+.+-+
T Consensus 359 g~~h~nqI~~~~--~~~-~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~-~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 359 GKGHTNQIKGMA--ASE-SGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG-TAVVACISDIVLLQD 433 (603)
T ss_pred cccccceEEEEe--ecC-CCc-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC-EEEEEecCcEEEEec
Confidence 78999999986 333 233 889999999999988654322221 11223344888888876 455555444444333
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--EEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~ 548 (706)
.... ..........+++++|++..+++|+.|+.|++|.+..... ...+..|..+|+++++|||+
T Consensus 434 ~~~~--------------~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~ 499 (603)
T KOG0318|consen 434 QTKV--------------SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG 499 (603)
T ss_pred CCcc--------------eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC
Confidence 3321 1112344578999999999999999999999999987543 33566799999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCceEE-EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE-EEEeccCCCcEEEE
Q 005254 549 QVVITASGDKTIKIWSISDGSCLK-TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC-IATYDKHEDKIWAL 626 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~ 626 (706)
.+||++...+.+.+||+.+.+... .+.-|...|.+++|+|+..++|+|+-|..|.||++..... +.....|...|+.+
T Consensus 500 ~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 500 AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence 999999999999999999887743 3445999999999999999999999999999999987644 44445899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.|- |...|++.+.|..|++|++.
T Consensus 580 ~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEe-cCceEEeccCcceeEEeccc
Confidence 996 56689999999999999875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=443.78 Aligned_cols=528 Identities=24% Similarity=0.417 Sum_probs=450.8
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecC-CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
+++++||+++|+++..+ -+++|++++++.++.++. |++||.-++|+|.+.+||+|+.|+.+++||+..+.+.+.|++|
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~ 146 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH 146 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC
Confidence 89999999999999988 799999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCC--EEEEecCCCcEEEEECCCCeE-EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 102 DGPAIGMACHPSGG--LLATAGADRKVLVWDVDGGFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 102 ~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.+.|.++.|.|+-. .|++|..|+++++||+.+... ++.+..|.+.|++++|++|+.. +++++.|..+.+||+.+.
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~--~ls~~RDkvi~vwd~~~~ 224 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE--LLSVGRDKVIIVWDLVQY 224 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce--EEEeccCcEEEEeehhhh
Confidence 99999999999765 489999999999999986654 7788899999999999999877 999999999999999888
Q ss_pred eeEEEeecccceEEEEEEecC-----CCEEEEEeCCCEEEEEeCCCCcceeeecCcc--eeeeEEeeCCCCCcccccccc
Q 005254 179 KCVATLDKHFSRVTSMAITSD-----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 251 (706)
+....++. ...+.++.+.++ |.+++++|.+|.+++||.+++++........ .+......+.
T Consensus 225 ~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~----------- 292 (775)
T KOG0319|consen 225 KKLKTLPL-YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIES----------- 292 (775)
T ss_pred hhhheech-hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccc-----------
Confidence 87777653 356777777776 6799999999999999999988765543322 1222222221
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE-EccCCCeeEEEeeCCceEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT-VLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 330 (706)
...++....+..+.++|.++..+... +-...+.+..+. +.|+.+.++++++.+.+++
T Consensus 293 ------------~~~~l~vtaeQnl~l~d~~~l~i~k~----------ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 293 ------------MSQLLLVTAEQNLFLYDEDELTIVKQ----------IVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred ------------cCceEEEEccceEEEEEccccEEehh----------hcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 22677888888999998877644332 223334455555 4577889999999999999
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc----eeeEeeeCCcceEEEeeeee
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM----SCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~ 406 (706)
|+...... ..+.+|.+.+.++... ..+.++++++.|..+++|.++.. .+.....+|...+.+++ .
T Consensus 351 y~~~~~~c--------~ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava--~ 419 (775)
T KOG0319|consen 351 YTLPTSYC--------QIIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA--G 419 (775)
T ss_pred EecCCCce--------EEEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee--e
Confidence 96655432 2778999999999943 35689999999999999987543 34556779999999998 5
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEE-----E----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCV-----G----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
+..+..+|++++.|+++++|++...+.. . ....|...|++++++|+.+ ++++|+.|.+.++|+++...
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-- 496 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-- 496 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce--
Confidence 6777778999999999999998762211 1 2347999999999999977 99999999999999998543
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
....+.+|...+.++.|+|..+.+++++.|++|+||.+.++.+++++.+|...|....|-.+++.|++++.|
T Consensus 497 --------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 497 --------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred --------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|-|++|++++++|+.++..|...|.+++-++.+.++++|+.||.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999999999999999999999999999999999999999996544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=410.64 Aligned_cols=594 Identities=19% Similarity=0.299 Sum_probs=472.4
Q ss_pred cccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 6 LKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 6 l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
|+++-.-.-++..-|+..++++||+|.++++.... ...+.++.....++.+. ...+|.|+.|||||+++|++..+ .+
T Consensus 42 LknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~gn-~l 119 (893)
T KOG0291|consen 42 LKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCGN-LL 119 (893)
T ss_pred ccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEecc-ee
Confidence 44433334455666777789999999998888766 67777777777777765 46789999999999999987644 89
Q ss_pred EEEECCC--------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE--EEEeeCCCCcEEEEEEcC
Q 005254 85 RVWDLST--------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFKGHKGVVSSILFHP 154 (706)
Q Consensus 85 ~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~ 154 (706)
.||-... ..+.+++.+|-..|.++.|+.|.++|++|+.|.++++|.++..+. ...+.+|...|.+.-|..
T Consensus 120 qiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~ 199 (893)
T KOG0291|consen 120 QIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA 199 (893)
T ss_pred EEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc
Confidence 9998643 245667888999999999999999999999999999999987665 567789999999999999
Q ss_pred CCCceEEEEEecCCeEEEEECCC-----------------------Cee-----E------EEeecccceEEEEEEecCC
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLA-----------------------KKC-----V------ATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~-----------------------~~~-----~------~~~~~~~~~v~~~~~~~~~ 200 (706)
+... +++.+.||.+.+|.... ++. . .-+......+++.+|++..
T Consensus 200 ~~~~--l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 200 NSLD--LYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred Ccce--EEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 8776 99999999999997651 111 0 1112233689999999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC-CCeEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRM 278 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 278 (706)
..|+++-..|...+|.+.+...+..+... .++..+.+...|. .++.++. -|.+-+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD-----------------------WiA~g~~klgQLlV 334 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD-----------------------WIAFGCSKLGQLLV 334 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC-----------------------EEEEcCCccceEEE
Confidence 99999999999999999998888777654 3444444444443 2222222 245555
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeE
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 358 (706)
|+..+. .......+|...+.+
T Consensus 335 weWqsE-----------------------------------------------------------sYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 335 WEWQSE-----------------------------------------------------------SYVLKQQGHSDRITS 355 (893)
T ss_pred EEeecc-----------------------------------------------------------ceeeeccccccceee
Confidence 544432 122345678888999
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 438 (706)
++|+| +++++++|+.||.|++||..++-+..++..|+..++.+. +...++. +++.+-||+|+.||+...+..+++.
T Consensus 356 l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~--f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft 431 (893)
T KOG0291|consen 356 LAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ--FTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFT 431 (893)
T ss_pred EEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE--EEecCCE-EEEeecCCeEEeeeecccceeeeec
Confidence 99987 889999999999999999999999999999999999998 7777777 9999999999999999999888877
Q ss_pred CC-CcCeEEEEEecCCCeEEEEecCCC-eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 439 GH-MGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 439 ~~-~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
.. .-...+++..|.|. ++++|+.|. .|.+|+++++. ....+.+|+++|.+++|+|++..|++++.|.
T Consensus 432 ~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq----------llDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 432 SPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ----------LLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred CCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe----------eeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 54 44677889999987 777777764 69999999875 7888999999999999999999999999999
Q ss_pred cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee--------------------
Q 005254 517 TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-------------------- 576 (706)
Q Consensus 517 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------- 576 (706)
+|++||+-.......--.+...+..++|+|+|+.|+++.-||+|.+||.+.+.....+.+
T Consensus 501 TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 999999866543333334778899999999999999999999999999987665543332
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc--------------------------------------
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------------------------------------- 618 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------- 618 (706)
.....+.+++|+||.++++|+....|.+|++.++-.++.++-
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i 660 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRI 660 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccc
Confidence 235689999999999999999999999999987655544320
Q ss_pred ---------------C---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccc
Q 005254 619 ---------------H---EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDAD 680 (706)
Q Consensus 619 ---------------~---~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (706)
+ .=.|.++.|+|.|+.++.++..| +.||.+.+...--.. .-+...+++....++.+.+
T Consensus 661 ~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf---~LD~~vTPe~v~~al~~qe 736 (893)
T KOG0291|consen 661 DIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPF---DLDVDVTPESVREALREQE 736 (893)
T ss_pred cccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEccc---ccccccCHHHHHHHHhcch
Confidence 0 11378899999999999999998 788998765443222 2233456666778888889
Q ss_pred hhHhhheeeecCCcchHHHHHHhh
Q 005254 681 YTKAIQVAFELRRPHKLFELFASV 704 (706)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~ 704 (706)
+.++...++++|+++-+.+.+|.+
T Consensus 737 y~~AlvmslRLNe~~lI~evlesv 760 (893)
T KOG0291|consen 737 YLKALVMSLRLNEYKLIKEVLESV 760 (893)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhC
Confidence 999999999999999888888765
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=392.10 Aligned_cols=336 Identities=29% Similarity=0.508 Sum_probs=306.6
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
++-..+.+|.++|.|++|+|+|++||+|+.|.++++||+.+..+.++.++|...|.|++|+|||+. +++|+.||+|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~--iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK--IASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch--hhccccCCeEEE
Confidence 445568899999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred EECCCCeeE-EEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
||..+|+++ ..+++|...|++++|.|-.
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~h--------------------------------------------------- 212 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLH--------------------------------------------------- 212 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccc---------------------------------------------------
Confidence 999988765 5789999999999997631
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 213 -------------------------------------------------------------------------------- 212 (480)
T KOG0271|consen 213 -------------------------------------------------------------------------------- 212 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
..|+.+
T Consensus 213 --------------------------------------------------------------------------l~p~~r 218 (480)
T KOG0271|consen 213 --------------------------------------------------------------------------LVPPCR 218 (480)
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 112223
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
. +++++.||.++|||+..+.++..+.+|..+|+|+.|-.+| ++++++.|++|++|+...+. ....+.
T Consensus 219 ~-las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~----------~~r~lk 285 (480)
T KOG0271|consen 219 R-LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK----------LCRELK 285 (480)
T ss_pred c-eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh----------HHHhhc
Confidence 2 8888999999999999999999999999999999998775 89999999999999987654 667788
Q ss_pred ecCcceEEEEEcC-----------C-------------------------CCEEEEeeCCCcEEEEeCCCc-cEEEEEee
Q 005254 492 AHGKDINSLAVAP-----------N-------------------------DSLVCTGSQDRTACVWRLPDL-VSVVTFRG 534 (706)
Q Consensus 492 ~~~~~i~~~~~s~-----------~-------------------------~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 534 (706)
+|...|+.++.+. . +..|++|+.|.++.+|+.... +++..+.+
T Consensus 286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence 8999999998872 2 235999999999999997644 57888999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
|...|..+.||||++++|+++-|..|++||.++|+.+.+|++|-.+|..++|+.|.++|++|+.|.++++||+++.+...
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-58 Score=388.43 Aligned_cols=368 Identities=26% Similarity=0.442 Sum_probs=306.8
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..++.+.++|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEeeCCCCcEEEEEEcCC---CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 133 GGFCT-HYFKGHKGVVSSILFHPD---TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 133 ~~~~~-~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+|+++ ..+.+|...|++++|.|- ....++++++.||.|+|||+..++++..+.+|..+|+|+.|-.+| ++++++.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 98765 568899999999999762 223359999999999999999999999999999999999998665 8999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|++|++|+...+.+
T Consensus 267 DrtIkvw~a~dG~~------------------------------------------------------------------ 280 (480)
T KOG0271|consen 267 DRTIKVWRALDGKL------------------------------------------------------------------ 280 (480)
T ss_pred CceEEEEEccchhH------------------------------------------------------------------
Confidence 99999998754432
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 281 -------------------------------------------------------------------------------- 280 (480)
T KOG0271|consen 281 -------------------------------------------------------------------------------- 280 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
...+.+|...|+.++ .+. .+.|-+|..|.+=+-....+ ..+. . ..... -+
T Consensus 281 --------------------~r~lkGHahwvN~la--lsT--dy~LRtgaf~~t~~~~~~~s--e~~~-~-Al~rY--~~ 330 (480)
T KOG0271|consen 281 --------------------CRELKGHAHWVNHLA--LST--DYVLRTGAFDHTGRKPKSFS--EEQK-K-ALERY--EA 330 (480)
T ss_pred --------------------HHhhcccchheeeee--ccc--hhhhhccccccccccCCChH--HHHH-H-HHHHH--HH
Confidence 225667777777775 222 22244444332211111000 0000 0 00000 01
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
..+++...|++|+.|.++.+|+-...+ ++.....+|..-|+.+.||||++++|+++.|..|++||-.+|+.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~k---------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSK---------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccc---------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 122333589999999999999865432 25566788999999999999999999999999999999999999
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
+..|++|-.+|..++|+.|.++|++|+.|.++++||+++.++...+.+|..+|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=365.65 Aligned_cols=529 Identities=20% Similarity=0.255 Sum_probs=418.6
Q ss_pred eeeeecc-----ceEEcCCCCEEEEeeCC-eEEEEEccCCe--EEEeecCCCccEEEEEEccCCCEEEEEec--cCeEEE
Q 005254 17 QQFYGGG-----PLVVSSDGSFIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRV 86 (706)
Q Consensus 17 ~~~~~~~-----~~~~s~dg~~l~~~~~~-~i~i~d~~~~~--~~~~l~~~~~~i~~l~~s~~~~~l~s~~~--d~~i~i 86 (706)
..+|+.+ -.-+||.|-|+|.|... .|+|||....+ +..+++.-.++|..|+|++|+++|++.++ +...++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 3445554 34599999999988765 89999976533 23566667889999999999999987754 334444
Q ss_pred EECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+-+.+|.-+..+.+|...|++++|-|... ++++|++|++|.+|+=.--+...+++.|..-|.++.|+|||.. +++.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~--Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR--FATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe--EEEec
Confidence 55558888999999999999999999776 6899999999999997777777788889999999999999887 99999
Q ss_pred cCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCccee----eeEEee
Q 005254 166 DDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV----EAVCAI 238 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~----~~~~~~ 238 (706)
.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++++||+.+.+++++++....+ ..+.+.
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 99999999999999999997 89999999999999999999999999999999999999888765542 222232
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
+.++++.+.+|+|.+++..... .......+...++++..++++..
T Consensus 290 -------------------------kd~lItVSl~G~in~ln~~d~~----------~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 290 -------------------------KDHLITVSLSGTINYLNPSDPS----------VLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred -------------------------CCeEEEEEcCcEEEEecccCCC----------hhheecccccceeEEEEcCCCCE
Confidence 2379999999999999987763 23345678889999999999999
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe--eeCCc
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV--LAGHS 396 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~--~~~~~ 396 (706)
++.++.||.+.-|+......... .-.+|...|..++.. +...+.+.+.|..+++.++........ .+-..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~------~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRL------AGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEeeccCceEEEEecCCcccccc------ccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 99999999999999886543211 124577778777764 335678888889999998865433222 12222
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
.+. +++ ..+++.. ++..+.++.+.+-|...-. .. .-.-...+++++|++. .++.|+.|+.|++|.+....
T Consensus 407 QP~-~la--v~~d~~~-avv~~~~~iv~l~~~~~~~---~~-~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~- 476 (603)
T KOG0318|consen 407 QPK-GLA--VLSDGGT-AVVACISDIVLLQDQTKVS---SI-PIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDE- 476 (603)
T ss_pred Cce-eEE--EcCCCCE-EEEEecCcEEEEecCCcce---ee-ccccccceEEEcCCCC-EEEEecccceEEEEEecCCc-
Confidence 222 444 5566655 4444444433333332211 11 1345677899999987 89999999999999998753
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEec
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.........|..+|+++++|||+.+||++...+.+.+||..+.+.....- -|...|.+++|+|+..++|+|+
T Consensus 477 -------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGS 549 (603)
T KOG0318|consen 477 -------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGS 549 (603)
T ss_pred -------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecc
Confidence 22445677899999999999999999999999999999999887744433 3999999999999999999999
Q ss_pred CCCcEEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 556 GDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
-|-.|.||+++.... +.....|...|+.+.|..+ ..|++.+.|..|++|++.
T Consensus 550 lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 999999999987644 4445568888999999754 689999999999999863
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=386.65 Aligned_cols=557 Identities=22% Similarity=0.319 Sum_probs=435.9
Q ss_pred ccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.+++.-+||.-+||+|..+ .|+||+..+......+.||..+|+++.|+..|..||+|+.|+.|.+||+-...-+..+++
T Consensus 68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~G 147 (888)
T KOG0306|consen 68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRG 147 (888)
T ss_pred EEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeec
Confidence 3467788999999999887 899999999999999999999999999999999999999999999999998888999999
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC---
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--- 177 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--- 177 (706)
|+..|+.+-|..+.++|++.+.|+.|++||+++..+..+.-.|.+.++.+++.+ +. +++++.|+.+++|++..
T Consensus 148 Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~--lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 148 HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KL--LVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred chHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ce--EEEEecCCceEEEEeecccc
Confidence 999999999999899999999999999999999999999999999999999987 33 89999999999999821
Q ss_pred ----Ce-----eEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc----ceeeeEEeeCCCCC
Q 005254 178 ----KK-----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----EMVEAVCAIPPGSA 243 (706)
Q Consensus 178 ----~~-----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 243 (706)
.. ...++ +...+....+...++++++++-+.|..+.++.+.+.+.+...... ..-.+. ...+...
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~-t~e~~~~ 302 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE-TEENEDD 302 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc-ccccccc
Confidence 01 11111 223344556667788889999999999999998765433221111 000000 0000000
Q ss_pred ccccccc-cc-chhhhccc----------cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE
Q 005254 244 FDSFLSS-YN-QQTIKKKR----------RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311 (706)
Q Consensus 244 ~~~~~~~-~~-~~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (706)
....... .. ...+.... ......++. -.++++.++.++.. .-...............+...+.+++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCCccccccceeeeccchhheeEEE
Confidence 0000000 00 00000000 001112222 55666666666551 11113333344567778888999998
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~ 391 (706)
++.+.. ++....++.+.+|+...... .+.+ ..+.+.+..|.| .+.++++|...|.+.+||+.+......
T Consensus 381 vS~d~~-~~~Sga~~SikiWn~~t~kc-------iRTi--~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 381 VSSDSI-LLASGAGESIKIWNRDTLKC-------IRTI--TCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred eecCce-eeeecCCCcEEEEEccCcce-------eEEe--ccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhh
Confidence 887655 44555678899998875421 1111 123667777876 788999999999999999999999999
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----ceEEEEE-------eCCCcCeEEEEEecCCCeEEEE
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGVG-------TGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+.|.+.+..++ ..|++.. +++|+.|.+|++||..- +...+.+ -.-...|.++.+|||++ +|++
T Consensus 450 i~AHdgaIWsi~--~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaV 525 (888)
T KOG0306|consen 450 IRAHDGAIWSIS--LSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAV 525 (888)
T ss_pred hhccccceeeee--ecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEE
Confidence 999999999999 8888888 99999999999998642 1111111 12457899999999998 9999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
+--|.++++|-+++.+ ....+.+|.-||.|+.+|||++++++|+.|.+|++|-+.-|.+.+.+-+|.+.|
T Consensus 526 sLLdnTVkVyflDtlK----------FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLK----------FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred EeccCeEEEEEeccee----------eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 9999999999998654 777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 610 (706)
.++.|.|....+.+++.|+.|+-||-...++++.+.+|...|++++.+|+|.++++++.|.+|++|.-...
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=383.90 Aligned_cols=603 Identities=15% Similarity=0.214 Sum_probs=446.2
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEEEe
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~ 98 (706)
++..++.+|-..++|+..+..+.+||++...+-+.+..|..+++|+|||++|+|+|+|- ....+++|+++....+.+|
T Consensus 39 ~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf 118 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF 118 (1080)
T ss_pred cCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh
Confidence 34579999999999999999999999999988888889999999999999999999984 6788999999999999999
Q ss_pred eccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
..|+..|+|++|+|.++|+++.+. |-.|.+||+........- .-...|..++|+.++.+ +++.+ +..|++|.++
T Consensus 119 vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fsEdgSY--fvT~g-nrHvk~wyl~ 194 (1080)
T KOG1408|consen 119 VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFSEDGSY--FVTSG-NRHVKLWYLQ 194 (1080)
T ss_pred hhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEccCCce--eeeee-eeeEEEEEee
Confidence 999999999999999999998775 456789998765444332 25678999999999885 66655 4669999998
Q ss_pred CCeeEEE---eecccceEEEEEE------------ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 177 AKKCVAT---LDKHFSRVTSMAI------------TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 177 ~~~~~~~---~~~~~~~v~~~~~------------~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
.++.... +.+...-.-.+.+ ..+..+. .+..|.+.-|.-+..-.....-......+++.+
T Consensus 195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfa--it~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--- 269 (1080)
T KOG1408|consen 195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFA--ITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--- 269 (1080)
T ss_pred ccccccCCccccchhhhccccccchhhhhhhcCcccccceEE--Eecccceeeechhhhhhhhhhhhccccceeeee---
Confidence 7763221 1111111111111 1111111 223454444432211111000001112222222
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccc--------------ccccCCCccce
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI--------------SFEMDDSKRGF 307 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 307 (706)
...+++++.+|.|++++..+-............ .......-...
T Consensus 270 ----------------------~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 270 ----------------------SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred ----------------------cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 237899999999999998876433222211111 11111122345
Q ss_pred eEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC----------CCcEEEEEecCCc
Q 005254 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE----------EEQYLAVATNIEQ 377 (706)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~~~~~ 377 (706)
..+.|.+..+.+.++..|..+++|++.+..... ....+..|...|+++.-.|- ...-+++++.|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEecccccccc----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 677889999999999999999999998765332 22344556666666655441 1345899999999
Q ss_pred EEEEeCCCceeeEe-------------------------------------eeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 378 VQVYDLSSMSCSYV-------------------------------------LAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 378 i~~~d~~~~~~~~~-------------------------------------~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
|++|++.....-.. .......+.++. .+|++++ |++|..-
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp~gqh-LAsGDr~ 480 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSPDGQH-LASGDRG 480 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECCCcce-ecccCcc
Confidence 99999875211000 001233466776 8899998 9999999
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
|.+++|++..-+....+..|...|.++.|+.. +..+|++++.|.-|.+||.... ......+.+|...|+
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSIT 551 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhccccccee
Confidence 99999999999999999999999999999853 2348999999999999998753 336677889999999
Q ss_pred EEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 499 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 499 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
++.|.-+| ..+++++.|+.|.+--......-..+.. ....+..++..|..+++++++.|..|+|||+++++..
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99999877 7788888898776433322111222222 2346889999999999999999999999999999999
Q ss_pred EEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 572 KTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 572 ~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.|++ |.+....+...|.|-||++.+.|.++.++|..+|+++.+..+|...|+.+.|++|.+.|++.+.||+|+||+
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 99986 556788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhcc
Q 005254 649 DSTAAEREEAFRKEEEAVLRGQ 670 (706)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~ 670 (706)
+...+......+.....+.+.+
T Consensus 712 lp~~mii~m~~r~~~lr~rq~~ 733 (1080)
T KOG1408|consen 712 LPLTMIIRMVNRNGRLRVRQLE 733 (1080)
T ss_pred CchhHhHHHHHHhhHHHHHhcc
Confidence 9987766655544444443333
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=347.38 Aligned_cols=537 Identities=19% Similarity=0.271 Sum_probs=386.8
Q ss_pred ceEEcCCCCEEEEeeCC---eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec--cCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~---~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~ 98 (706)
++|||++|+|+|+|.-+ .+++|++.....+..+..|...|+|++|+|.++|+++.+. |-.|.+||+........-
T Consensus 83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn 162 (1080)
T KOG1408|consen 83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN 162 (1080)
T ss_pred EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence 89999999999999754 6999999999999999999999999999999999998765 556788998765554443
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-------------e------------------------e
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-------------F------------------------K 141 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-------------~------------------------~ 141 (706)
+ -...|.+++|+.||.|+++.+ ...|++|.++.++.... + .
T Consensus 163 k-iss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~q 240 (1080)
T KOG1408|consen 163 K-ISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQ 240 (1080)
T ss_pred c-cceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecc
Confidence 3 457899999999999999987 47899999977651110 0 0
Q ss_pred C-----------------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec-c----------------
Q 005254 142 G-----------------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-H---------------- 187 (706)
Q Consensus 142 ~-----------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~---------------- 187 (706)
+ .+..-.|++.+. .++++|+.+|.|++++..+-..+.+++. |
T Consensus 241 GhLvEFSsRRLLDKWVqcRTTnAnCIcVs~----r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~ 316 (1080)
T KOG1408|consen 241 GHLVEFSSRRLLDKWVQCRTTNANCICVSS----RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKN 316 (1080)
T ss_pred cceeeechhhhhhhhhhhhccccceeeeec----ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccc
Confidence 0 011123444432 3599999999999999876554443321 1
Q ss_pred -------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceee----ecCcceeeeEEeeCCCCCcccccccccchhh
Q 005254 188 -------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT----VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (706)
Q Consensus 188 -------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (706)
-....++.|.+....|.+...|..+++||+++...+.. +-+...+..+...|-+- ..
T Consensus 317 s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv------------~~ 384 (1080)
T KOG1408|consen 317 SESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNV------------HS 384 (1080)
T ss_pred cccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccc------------cC
Confidence 11245678999889999999999999999987554322 22223333332222100 00
Q ss_pred hccccccceEEEEecCCCeEEEEECCCCe---EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 257 KKKRRSLEIHFITVGERGIVRMWNADSAC---LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
.....-....|++++.|++|++|+++... ++....... .. +-....|+...+...
T Consensus 385 ~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~-----------~l-----------~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 385 PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA-----------NL-----------SKIPYEDSTQQIMHD 442 (1080)
T ss_pred cccccCCccceeEecCCCcEEEeecccccccceeecccchh-----------hh-----------hcCccccCchhhhhh
Confidence 00111123369999999999999998741 111000000 00 000111111111100
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEE
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 413 (706)
...+ . --............+.+++.+| ++++|+.|...|.+++|++...+....+..|...|.|+.+.+-.-+..+
T Consensus 443 ~~~~--~-fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 443 ASAG--I-FDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred ccCC--c-ccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 0000 0 0000111222334566777765 8999999999999999999999999999999999999996555556678
Q ss_pred EEEeeCCCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 414 IVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
|++++.|.-|.+||... -.+++.+.+|...|+++.|.-.| +..+++++.|..|.+--.+.... . .......-.
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~-g----~~f~r~t~t 593 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-G----RLFPRHTQT 593 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC-c----eeccccccc
Confidence 99999999999999865 45677889999999999998765 34688999998776543332110 0 000111111
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.....+..+++.|..+++++++.|+.|+||++.+++..+.|++ |.+....+...|.|.+|++.+.|.++.++|..++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 2234578899999999999999999999999999999999986 6677888999999999999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
+++..+.+|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-48 Score=331.53 Aligned_cols=284 Identities=28% Similarity=0.419 Sum_probs=268.0
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC-CCEEEEEeeCCCcEEEEeCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 429 (706)
+...++..+.|+. ++..+++++.+|.+.+|+..+...+..+.+|...+.++. |.|. ...-+++++.||++++|++.
T Consensus 173 gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~--fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAV--FHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEE--EccCCCccceeeeccCCceeeeccC
Confidence 4456666666665 899999999999999999999999999999999999999 8887 35459999999999999999
Q ss_pred CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
+..++..+.+|...|..++|+|+|+ +|.+++.|.+-++||+.+.. ......+|...|.+++|.|||.++
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~----------ElL~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS----------ELLLQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch----------hhHhhcccccccceeEecCCCcee
Confidence 9999999999999999999999999 99999999999999999764 455667899999999999999999
Q ss_pred EEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEe-
Q 005254 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT- 588 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~- 588 (706)
++|+.|..-+|||++++..+..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+|
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.|.+|++++.|++++||...++.+++.+.+|.+.|.++..++|+.+++|++.|.++++|.
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 788999999999999999999999999999999999999999999999999999999996
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=327.57 Aligned_cols=585 Identities=18% Similarity=0.238 Sum_probs=455.9
Q ss_pred eeeeeeeccceEEcCCCC--EEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC
Q 005254 15 VLQQFYGGGPLVVSSDGS--FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~--~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 92 (706)
-+..+-++-+..+..-|. ++.++.++...+||.+....+..-..+...|+|++-..+- +.+|.. ..|.+|- .|
T Consensus 29 ~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~--vy~A~g-~~i~~~~--rg 103 (910)
T KOG1539|consen 29 ALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDY--VYVASG-NKIYAYA--RG 103 (910)
T ss_pred hhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCce--EEEecC-cEEEEEE--cc
Confidence 333333333455554333 3445556699999999988887777899999999877554 444432 3677775 44
Q ss_pred -eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eE----EEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 -KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FC----THYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
...+.+..|.+.|.-+.. =|.+++++..++.+.||+..++ +. ....+.....|+++ ++|..-.+-++.|+.
T Consensus 104 k~i~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~ 180 (910)
T KOG1539|consen 104 KHIRHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSS 180 (910)
T ss_pred ceEEEEeccccceEEEEee--ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeec
Confidence 456677778877776654 3788999999999999999874 21 12222222337766 477666667999999
Q ss_pred CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcc
Q 005254 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFD 245 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (706)
+|.+.+|++++++.+++++++...|+++.=+|-=..++.|..+|.|.+++++..+.+..+... ..+..+.|..+|..
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-- 258 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-- 258 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--
Confidence 999999999999999999999999999999998889999999999999999999999999886 88999999999864
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+++++..|.+.+||++...+..... ..+..++....+.|....++....|
T Consensus 259 --------------------~las~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~D 309 (910)
T KOG1539|consen 259 --------------------LLASGRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGAD 309 (910)
T ss_pred --------------------eEEeccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCC
Confidence 68888899999999999886554332 2345677888899999999999999
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-------------
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL------------- 392 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~------------- 392 (706)
..+.+|-....... ....+.-.+|..+..++.|....+..+..+..|+.++.+++......+.+
T Consensus 310 nSlk~~vfD~~dg~---pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGV---PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred CceeEEEeeCCCCc---chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 99999987744322 23445567899999999999999999999999999999887532211100
Q ss_pred -----eCCcceEEEeeeee--ecCCCEEEEEeeCCCcEEEEeCCCceEEEE-E-----eCCCcCeEEEEEecCCCeEEEE
Q 005254 393 -----AGHSEIVLCLDTCA--LSSGKILIVTGSKDNSVRLWDSESRCCVGV-G-----TGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 393 -----~~~~~~i~~~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
...-.++..+++.. -......++..-.+...+.|+..+...-+. + +.....+++++.++.|. +.+.
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~I 465 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFI 465 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEE
Confidence 01122344443111 112233355555677899999987655222 2 22347899999999987 8999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
|...|.|.+|+++.+-.. ........|..+|+.++...-++.+++++.+|.+..||..+..++..++ -..++
T Consensus 466 G~S~G~Id~fNmQSGi~r-------~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~ 537 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHR-------KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSI 537 (910)
T ss_pred eccCCeEEEEEcccCeee-------cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCc
Confidence 999999999999887310 0111235799999999999999999999999999999999988777776 45678
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
+++..+.....++.+..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|++++.|++|++||+.++.++..+..
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v- 616 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV- 616 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-
Confidence 8888888888999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCc
Q 005254 620 EDKIWALAVGKKTEMFATGGSD-ALVNLWHDST 651 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~ 651 (706)
..+.+++.|||+|.+|||+..| .-|++|.-.+
T Consensus 617 d~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 617 DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 6688999999999999999988 6799996433
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=308.42 Aligned_cols=492 Identities=18% Similarity=0.269 Sum_probs=371.1
Q ss_pred ceeeceeeeeeeecc-----ceEEcCCCCEEEEeeCC---------eEEEEEccCCeEEEeecCCCccEEEEEEcc--CC
Q 005254 9 SYGCEPVLQQFYGGG-----PLVVSSDGSFIACACGE---------SINIVDLSNASIKSTIEGGSDTITALALSP--DD 72 (706)
Q Consensus 9 ~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~---------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~--~~ 72 (706)
.|......|++|.++ |++++||.-.+++|... .++|||..+...++.+......|+|++||+ .|
T Consensus 89 l~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 89 LYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred EEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC
Confidence 345566678899887 99999999999876432 499999988888888888888999999998 35
Q ss_pred CEEEEE--eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE---eeCC-CCc
Q 005254 73 KLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY---FKGH-KGV 146 (706)
Q Consensus 73 ~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~-~~~ 146 (706)
.+|+.. +.+..+.+||++.+......+..+..|....|.|.+.-|......+.+.+|+++.+...++ +..+ ..-
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~ 248 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKF 248 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceE
Confidence 666655 4466799999999999888888889999999999766555555579999999998876554 3332 367
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
|.|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..|| ...+.++..
T Consensus 249 Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~ 323 (626)
T KOG2106|consen 249 VLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRET 323 (626)
T ss_pred EEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-ccccccccc
Confidence 99999999988 99999999999999988888888779999999999999996 55599999999999 444444433
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
..++....+....
T Consensus 324 elPe~~G~iRtv~------------------------------------------------------------------- 336 (626)
T KOG2106|consen 324 ELPEQFGPIRTVA------------------------------------------------------------------- 336 (626)
T ss_pred cCchhcCCeeEEe-------------------------------------------------------------------
Confidence 3322211111111
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
+.... +++++..+.|..=.++++
T Consensus 337 -------e~~~d--------------------------------------------------i~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 337 -------EGKGD--------------------------------------------------ILVGTTRNFILQGTLENG 359 (626)
T ss_pred -------cCCCc--------------------------------------------------EEEeeccceEEEeeecCC
Confidence 11111 333333233332223222
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
- .....+|......++ ..|..+. +++++.|+.+++|+ ..++... ..-..+..++.|+|.| .++.|...|..
T Consensus 360 f-~~~v~gh~delwgla--~hps~~q-~~T~gqdk~v~lW~--~~k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w 430 (626)
T KOG2106|consen 360 F-TLTVQGHGDELWGLA--THPSKNQ-LLTCGQDKHVRLWN--DHKLEWT-KIIEDPAECADFHPSG--VVAVGTATGRW 430 (626)
T ss_pred c-eEEEEecccceeeEE--cCCChhh-eeeccCcceEEEcc--CCceeEE-EEecCceeEeeccCcc--eEEEeeccceE
Confidence 2 225567777888886 6666665 99999999999999 3333332 2345788999999998 79999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE-EE-eecCCcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TF-RGHKRGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~v~~~~~ 544 (706)
.+.|.++. ..........++++++|+|+|.+||+|+.|+.|+||.+....... .. +.+..+|+.+.|
T Consensus 431 ~V~d~e~~-----------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 431 FVLDTETQ-----------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred EEEecccc-----------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 99998764 233333348899999999999999999999999999987553332 22 235589999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEe------------------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFE------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
|+|+++|.+-+.|-.|..|.....+.+...+ .+...|..++-+.+.+.||+|.+.|.|++|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFS 579 (626)
T ss_pred cCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEc
Confidence 9999999999999999999543222221111 2445566677777888999999999999998
Q ss_pred CCCCe---EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 607 VRTGE---CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 607 ~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
..-.+ +...+.+|.+-|++++|.-+...+++.+.|.+|..|++
T Consensus 580 yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 580 YPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 75433 44566799999999999999999998889999999987
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=321.79 Aligned_cols=285 Identities=30% Similarity=0.474 Sum_probs=264.0
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
+.+.+|..+.||+|++.||+|+.+|.+++|+..+...+..|.+|...+.++.|+|..+..-+++++.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45789999999999999999999999999999999999999999999999999998544559999999999999999999
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
++..+.+|...|..++|+|+|++|.+++.|.+-++||+.++..+
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El------------------------------------ 296 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL------------------------------------ 296 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh------------------------------------
Confidence 99999999999999999999999999999999999998764422
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 297 -------------------------------------------------------------------------------- 296 (459)
T KOG0272|consen 297 -------------------------------------------------------------------------------- 296 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
....+|...|.+++ |.++|.. +++|+.
T Consensus 297 --------------------------------------------------L~QEGHs~~v~~ia--f~~DGSL-~~tGGl 323 (459)
T KOG0272|consen 297 --------------------------------------------------LLQEGHSKGVFSIA--FQPDGSL-AATGGL 323 (459)
T ss_pred --------------------------------------------------HhhcccccccceeE--ecCCCce-eeccCc
Confidence 13456788888887 7788877 999999
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
|..-++||+++++++..+.+|..+|.+++|+|+|. .+++|+.|++++|||++... ....+.+|.+-|+.
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~----------~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS----------ELYTIPAHSNLVSQ 392 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc----------cceecccccchhhh
Confidence 99999999999999999999999999999999987 89999999999999998764 57778899999999
Q ss_pred EEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 500 LAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 500 ~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+.|+| .|.+|++++.|++++||...+..+++.+.+|.+.|.++.+++|++++++++.|.++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 789999999999999999999999999999999999999999999999999999999995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=323.44 Aligned_cols=535 Identities=19% Similarity=0.265 Sum_probs=411.5
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC-eE----EEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-KC----LRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~ 99 (706)
.|++.+..++.++.++.|.+|-. ...+.+.+.+|.+.|.-+..- |.+++++..++.+.||+..++ +. +..++
T Consensus 80 ~alas~~~~vy~A~g~~i~~~~r-gk~i~~~~~~~~a~v~~l~~f--Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~ 156 (910)
T KOG1539|consen 80 TALASDKDYVYVASGNKIYAYAR-GKHIRHTTLLHGAKVHLLLPF--GEHLIAVDISNILFVWKTSSIQEELYLQSTFLK 156 (910)
T ss_pred EEEEecCceEEEecCcEEEEEEc-cceEEEEeccccceEEEEeee--cceEEEEEccCcEEEEEeccccccccccceeee
Confidence 45667888999999999999963 335668888898888876644 889999999999999999884 22 12222
Q ss_pred ccCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 100 GHDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 100 ~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
.....|+++. +|. =+.++.|+.+|.+.+||+.+++.++.++++...|+++.-+|--+ +++.|..+|+|.++++..
T Consensus 157 ~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~ 233 (910)
T KOG1539|consen 157 VEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKF 233 (910)
T ss_pred ccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce--EEEEeccCceEEEEEccc
Confidence 2223376654 453 34688899999999999999999999999999999999999655 499999999999999999
Q ss_pred CeeEEEeecccceEEEEEEecCCCE-EEEEeCCCEEEEEeCCCCcceeeec--CcceeeeEEeeCCCCCcccccccccch
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGST-LISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
++.+.+++...+.|+.++|..||+. +++++..|.+.+||++..+....+. +...+....+.+...
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep------------ 301 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP------------ 301 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc------------
Confidence 9999999866799999999999985 5566667999999999887766554 224455555555443
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEc-cCCCeeEEEeeCCceEEEEe
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL-PSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 333 (706)
.+++.+.|..+++|=.+++.-. ...-.....+..+..++.+. .++..++....|+.+..+.+
T Consensus 302 -----------Vl~ta~~DnSlk~~vfD~~dg~------pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 302 -----------VLVTAGADNSLKVWVFDSGDGV------PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred -----------eEeeccCCCceeEEEeeCCCCc------chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhh
Confidence 7889999999999876644111 11111223445555666665 67777888899998888877
Q ss_pred eeccccceee-----------EEeeEecccCceeeEeeEeC----CCCcEEEEEecCCcEEEEeCCCcee-eEeeeCC--
Q 005254 334 VEVPEKKMEL-----------ILSKRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGH-- 395 (706)
Q Consensus 334 ~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~-- 395 (706)
.........- .......-.-.++..+++.. .-.+.+++.-.+...+.|+..+... ...+...
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~ 444 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF 444 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence 6543221110 01111122234566666643 2356777777888999999987655 2222211
Q ss_pred -cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 396 -SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 396 -~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
...+.+.++|.++.|+. .+.|...|.|.+|++++|.....+ +.|.++|++++...-++ .+++++.+|.+.+|++
T Consensus 445 ~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDF 522 (910)
T ss_pred cccCcceEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEec
Confidence 13444455557888887 889999999999999999888887 58999999999998877 8999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.... ....-.-...++++..+.....++++..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|
T Consensus 523 ~~k~-----------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 523 KKKV-----------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred CCcc-----------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 8652 11122244567888888888899999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-CCEEEEECC
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-GLVKLWTVR 608 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~ 608 (706)
++++.|++|++||+.++.++..+. -..+++++.|+|+|.+||+...| .-|++|.=.
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999999998886 56789999999999999999998 579999643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=287.74 Aligned_cols=287 Identities=29% Similarity=0.473 Sum_probs=260.8
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
.++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|+|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999899999999999999999999999999999997
Q ss_pred CC------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEE
Q 005254 133 GG------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLIS 205 (706)
Q Consensus 133 ~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 205 (706)
+. +....+.+|.+-+.++.|.+|+. +++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 54 45567889999999999998754 99999999999999999999999999999999999999 8999999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
|+.|+..++||++.+.
T Consensus 205 g~cD~~aklWD~R~~~---------------------------------------------------------------- 220 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQ---------------------------------------------------------------- 220 (343)
T ss_pred cccccceeeeeccCcc----------------------------------------------------------------
Confidence 9999988888877543
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
T Consensus 221 -------------------------------------------------------------------------------- 220 (343)
T KOG0286|consen 221 -------------------------------------------------------------------------------- 220 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC--CCcC
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGA 443 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~ 443 (706)
+.+.+.+|...|..+. |+|++.. +++|++|++.++||++..+.+..+.. ...+
T Consensus 221 ----------------------c~qtF~ghesDINsv~--ffP~G~a-fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 221 ----------------------CVQTFEGHESDINSVR--FFPSGDA-FATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred ----------------------eeEeecccccccceEE--EccCCCe-eeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 3336677888888887 8888888 99999999999999999988887763 3568
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
|++++|+..|+ +|++|..|..+.+||.-..+ ....+.+|++.|+|+..+|||..+++|+.|..++||.
T Consensus 276 itSv~FS~SGR-lLfagy~d~~c~vWDtlk~e----------~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGE----------RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEccccc-EEEeeecCCceeEeeccccc----------eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999998 89999999999999986554 6778889999999999999999999999999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=312.71 Aligned_cols=577 Identities=17% Similarity=0.252 Sum_probs=424.7
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCC---EEEEEeccCeEEEEECCCC--eEEEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK---LLFSSGHSREIRVWDLSTL--KCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~---~l~s~~~d~~i~iwd~~~~--~~~~~~~ 99 (706)
..+.| +..+|+|.+..|.+||..+......+.||.++|+|+.+-|+.+ ++++|+.|+.|.+|.++.. ..+..+.
T Consensus 20 ~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~ 98 (764)
T KOG1063|consen 20 SSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ 98 (764)
T ss_pred ccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec
Confidence 33434 4588999999999999988878899999999999999999887 8999999999999999843 3455666
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+|...+ +++........+.+.|+.+.+||.+..+ +...+.- ...-..|+++.|+.+..+++.|+.+..|.++.-
T Consensus 99 g~~~~~--~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 99 GHCKEC--VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred CcceeE--EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 655554 4454444444444689999999996555 2222222 222346777788767778888999999999875
Q ss_pred CC--CeeEEEeecccceEEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 176 LA--KKCVATLDKHFSRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 176 ~~--~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
.. .+.+..+.+|.+.|.+++|...+. +|++++.|..|++|.+.-........... .....++..
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~---~~t~~~~~~-------- 245 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED---SLTTLSNLP-------- 245 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc---ccccccCCc--------
Confidence 53 356778899999999999986544 88899999999999975433211100000 000000000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
.+.+.. ..........-...+..-+.++.+.|.+..|+.++.|.++.+
T Consensus 246 ---------------~f~~l~-----------------~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii 293 (764)
T KOG1063|consen 246 ---------------VFMILE-----------------EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII 293 (764)
T ss_pred ---------------eeeeee-----------------eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence 011100 000111112234467778899999999999999999999999
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeee
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCAL 407 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~ 407 (706)
|...+....-........+.+......+..|++ +++.+++-+..|..++|..... .....+.+|.+.|..++ +.
T Consensus 294 W~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~--W~ 370 (764)
T KOG1063|consen 294 WKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVD--WD 370 (764)
T ss_pred EecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeee--ec
Confidence 998877655555555555666677788888887 6678888888899999994332 33446779999999999 88
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC---------
Q 005254 408 SSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL--------- 474 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~--------- 474 (706)
|.++. +++.+.|.+-|+|-.-. ...+...+-|...++++++-+. +..+++|.....+++|+.+..
T Consensus 371 psGef-lLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~ 448 (764)
T KOG1063|consen 371 PSGEF-LLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAIC 448 (764)
T ss_pred CCCCE-EEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHh
Confidence 99997 88899999999986542 2344455678899999999885 336889999999999976421
Q ss_pred ------C-----------------C-C-------------CCcc--------------------cccceeEEEeecCcce
Q 005254 475 ------S-----------------D-D-------------AEQP--------------------MNLKAKAVVAAHGKDI 497 (706)
Q Consensus 475 ------~-----------------~-~-------------~~~~--------------------~~~~~~~~~~~~~~~i 497 (706)
. . . .+.+ .-......+.+|...|
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv 528 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEV 528 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeE
Confidence 0 0 0 0000 0011222345799999
Q ss_pred EEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce--
Q 005254 498 NSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-- 570 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-- 570 (706)
.+++.+|+|+++|+++... .|++|+..+......+.+|+-.|+.++|||||++|++.+.|.++.+|.......
T Consensus 529 ~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e 608 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE 608 (764)
T ss_pred EEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh
Confidence 9999999999999988654 499999999999999999999999999999999999999999999999754322
Q ss_pred --EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC--eEEEE--eccCCCcEEEEEEcCC-----CCEEEEEe
Q 005254 571 --LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG--ECIAT--YDKHEDKIWALAVGKK-----TEMFATGG 639 (706)
Q Consensus 571 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~~~~s~~-----~~~l~~~~ 639 (706)
....+.|..-|.++.|+|++.+++|++.|..|++|..... +.+.. ...+...|+++++.|- +..++.|-
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl 688 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL 688 (764)
T ss_pred hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe
Confidence 2336679999999999999999999999999999999887 44433 2367889999998763 22677888
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
+.|.|.+|+....
T Consensus 689 e~GeI~l~~~~~~ 701 (764)
T KOG1063|consen 689 EKGEIVLWRRKRE 701 (764)
T ss_pred cccEEEEEecccc
Confidence 9999999997643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=278.92 Aligned_cols=292 Identities=22% Similarity=0.371 Sum_probs=270.6
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
..+...+.+.+|...|.++.|.+ +.+++++++.||.+.+||.-+......++-....|...+ +.|.++. ++.|+-|
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA--~sPSg~~-VAcGGLd 118 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCA--YSPSGNF-VACGGLD 118 (343)
T ss_pred eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEE--ECCCCCe-EEecCcC
Confidence 34556688999999999999987 889999999999999999999988888888888888777 8888887 9999999
Q ss_pred CcEEEEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 421 NSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 421 g~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
....||++.+. +..+.+.+|.+.+.++.|.+|+. |++++.|.+..+||++.+. ....+.+|.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~----------~~~~f~GH~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQ----------QTQVFHGHT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccce----------EEEEecCCc
Confidence 99999999865 45567889999999999999865 9999999999999999875 777889999
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 495 KDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 495 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..|.++.++| +++.+++|+-|+..++||++.+...+.|.+|...|.++.|.|+|.-+++|+.|++.++||++..+.+..
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV 266 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred Eeec--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 574 FEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 574 ~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+... ..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+|||..|+||+.|.+++||.
T Consensus 267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8732 35899999999999999999999999999999999999999999999999999999999999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=299.35 Aligned_cols=469 Identities=18% Similarity=0.251 Sum_probs=347.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.++.|+|...+++++--+ .+.|||.++...++.++-..-+|.+..|-+..+++++|++|..|+||+..+++.+..|..|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 369999999998877654 9999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..-|++++.+|...+++++++|-+|++||++.+ .+.+.+.+|..-|.+++|.|. +.+-+++++-|++|++|.+.+..+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence 999999999999999999999999999999876 577889999999999999997 445699999999999999999999
Q ss_pred EEEeecccceEEEEEEecCC--CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 181 VATLDKHFSRVTSMAITSDG--STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..++.+|...|+|+.+-+.| .+|++|+.|..+++||.++..+++++..+
T Consensus 176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH----------------------------- 226 (794)
T KOG0276|consen 176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH----------------------------- 226 (794)
T ss_pred ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-----------------------------
Confidence 99999999999999998755 69999999999999999999888776543
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (794)
T KOG0276|consen 227 -------------------------------------------------------------------------------- 226 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
...|..+.|.| .-.++++|+.||++++|+..+.+....+.-..+.+.|+. ....++. ++.|.
T Consensus 227 --------------t~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~--~~k~~~~-i~vG~ 288 (794)
T KOG0276|consen 227 --------------TNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA--AHKGDGK-IAVGF 288 (794)
T ss_pred --------------cccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe--ecCCCCe-EEEec
Confidence 33333344433 445677777777777777777777777777778888886 5566666 88888
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC------CCcccccceeEEEee
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAA 492 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~------~~~~~~~~~~~~~~~ 492 (706)
++|.+.+ .+....+ .+..++.|+ ++-+... .|.--++...... ...+...+.. -.
T Consensus 289 Deg~i~v-~lgreeP------------~vsMd~~gK-Iiwa~~~--ei~~~~~ks~~~~~ev~DgErL~LsvKeL---gs 349 (794)
T KOG0276|consen 289 DEGSVTV-KLGREEP------------AVSMDSNGK-IIWAVHS--EIQAVNLKSVGAQKEVTDGERLPLSVKEL---GS 349 (794)
T ss_pred cCCcEEE-EccCCCC------------ceeecCCcc-EEEEcCc--eeeeeeceeccCcccccCCccccchhhhc---cc
Confidence 8887754 2222222 233333333 2222211 1111111111100 0001111111 11
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
..-....++.+|+|+++++++ ||.-.||..-.. -..+.+.-....|++|.+..++--.++.|+++ ++.+..+
T Consensus 350 ~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k 421 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK 421 (794)
T ss_pred cccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc
Confidence 112235688899999888775 788888763211 11244556778999998888888788889999 6777777
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.+..... +..--.|.+|. ...++.+++||-.+++.++.+.-. ...+.|+.+|.+++.++.| ...+..++..
T Consensus 422 si~~~~~----~e~i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~-Sfyil~~n~d 492 (794)
T KOG0276|consen 422 SIRPDMS----AEGIFGGPLLG-VRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDD-SFYILKFNAD 492 (794)
T ss_pred ccccccc----eeeecCCceEE-EEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecC-ceeEEEecHH
Confidence 6653221 22223444444 445677999999999999999643 3467899899888877655 5778887766
Q ss_pred hHH
Q 005254 653 AER 655 (706)
Q Consensus 653 ~~~ 655 (706)
...
T Consensus 493 ~v~ 495 (794)
T KOG0276|consen 493 AVA 495 (794)
T ss_pred HHH
Confidence 543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=276.20 Aligned_cols=291 Identities=24% Similarity=0.371 Sum_probs=258.0
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
+.....+.+|++.|..++..+.+.+.+..++.|..+.+|++.. +..++.+.+|...|..+. .+++++. .+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~--~s~dg~~-alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVV--LSSDGNF-ALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceE--EccCCce-EEec
Confidence 4455678899999999999999999999999999999999864 566889999999999997 7788887 9999
Q ss_pred eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec--Cc
Q 005254 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GK 495 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 495 (706)
+.|+.+++||+.+++..+.+.+|...|.+++|+++.+ .+++|+.|.+|++|+.-.. +......+ ..
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-----------ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-----------CKYTIHEDSHRE 149 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc-----------EEEEEecCCCcC
Confidence 9999999999999999999999999999999999977 8999999999999998764 33333333 67
Q ss_pred ceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 496 DINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 496 ~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.|+|+.|+|+ ..++++++.|++|++||+.+.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.+..
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 8999999998 78999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----C-----CCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----H-----EDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~-----~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..++. . .-...+++||+||..|+.|..|+.|
T Consensus 230 l~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 LE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred cc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 87 88999999999986555544 556699999999998877752 1 1234678999999999999999999
Q ss_pred EEEECC
Q 005254 645 NLWHDS 650 (706)
Q Consensus 645 ~vw~~~ 650 (706)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=286.33 Aligned_cols=332 Identities=21% Similarity=0.332 Sum_probs=273.3
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
.+..|..|...|.+++.+|+.+++|+|+.|..-.+|+..++.....+.+|+..|+++.||.||.+||+|+-+|.|+||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
.++.....+...-..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99998888887788899999999554 5999999999999999998888999999999999999999999999999999
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++|+..++++...+...+..
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~----------------------------------------------------------- 234 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGL----------------------------------------------------------- 234 (399)
T ss_pred EEEEecCCCceeEEecccccC-----------------------------------------------------------
Confidence 999999988765544321100
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 235 -------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 235 -------------------------------------------------------------------------------- 234 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--------CCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~ 443 (706)
...++. +...+.. ++.|..++.+++-+..+++.+.... .+...
T Consensus 235 --------------------------~~~~~~--~~~~~~~-~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 235 --------------------------ELPCIS--LNLAGST-LTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred --------------------------cCCccc--cccccce-eEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 000111 1111111 4444444444444444444443332 23333
Q ss_pred eEE---EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 444 VGA---VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 444 v~~---~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
+.+ +.++..-+ +.++|+-||+|.|||+... ..+..-.|...|+.+.|-+ ..+|++++.+|.|+.
T Consensus 286 ~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~-----------~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 286 DESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS-----------TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQ 352 (399)
T ss_pred hhhhhhcccccccc-hhhcccccceEEEEecccc-----------hhheeccCCCceEEEEEcC-cchheeeccCceEEe
Confidence 444 44444544 7889999999999999865 4445566888899999998 789999999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
||.++|++...+.+|..+|.+++++|+.+++++++.|++.+|++..
T Consensus 353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=269.29 Aligned_cols=293 Identities=28% Similarity=0.484 Sum_probs=252.7
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
...+|++++.|.+|++|...+|.+.++++...+.|..+.++|+++.|++++ ...|++||+++...
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np-------------- 73 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP-------------- 73 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC--------------
Confidence 446799999999999999999999999998889999999999999999887 45688888765321
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T Consensus 74 -------------------------------------------------------------------------------- 73 (311)
T KOG0315|consen 74 -------------------------------------------------------------------------------- 73 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
.++..+.+|.
T Consensus 74 ----------------------------------------------------------------------~Pv~t~e~h~ 83 (311)
T KOG0315|consen 74 ----------------------------------------------------------------------NPVATFEGHT 83 (311)
T ss_pred ----------------------------------------------------------------------CceeEEeccC
Confidence 1233566777
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
..|..+. |..+++. +++|++||+++|||++...+.+.++ +..+|+++..+|+.. -|+++.++|.|++||+.....
T Consensus 84 kNVtaVg--F~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVG--FQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEE--EeecCeE-EEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCcc
Confidence 7888887 7788888 9999999999999999966555554 669999999999865 799999999999999986521
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------cEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL------VSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
...........|.++.+.|||.+++.+...|..++|++... +++..++.|++-+..+.+|||+++
T Consensus 159 ---------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 159 ---------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ---------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 12223334577999999999999999999999999998654 566678889999999999999999
Q ss_pred EEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 551 VITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
||+++.|.+++||+.++. +.-..+.+|...+..++||.||+||++++.|+.+++|++..++.++.+.+|.....|++.
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 999999999999999887 667788899999999999999999999999999999999999999999999988888775
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=271.05 Aligned_cols=286 Identities=20% Similarity=0.371 Sum_probs=249.3
Q ss_pred ceEEcCC-CCEEEEeeCC-eEEEEEcc-----CCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE
Q 005254 24 PLVVSSD-GSFIACACGE-SINIVDLS-----NASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR 96 (706)
Q Consensus 24 ~~~~s~d-g~~l~~~~~~-~i~i~d~~-----~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 96 (706)
+++..+. -+.++.++.+ .+.+|++. .|.+++.++||+..|..++.++||++.++++.|+.+++||+.+++..+
T Consensus 20 ~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 20 ALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred EEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE
Confidence 5666666 4455555555 79999874 466789999999999999999999999999999999999999999999
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
.|.+|...|.+++|++|++.+++|+.|.+|++||.-.+........ +...|.|++|+|+....++++++.|++|++||+
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 9999999999999999999999999999999999876654444433 378999999999977888999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
++.+....+.+|.+.++.++++|||.++++|+.||.+.+||++.++.+..+.....+.+++|+|+.
T Consensus 180 ~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr-------------- 245 (315)
T KOG0279|consen 180 RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR-------------- 245 (315)
T ss_pred CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
+.++...+..|++||++++........+.... ..........+++++++|+.|+++..++.+.+|.+.
T Consensus 246 ----------ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 ----------YWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------eeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 56777777789999999997665554443333 233345566788899999999999999999999764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=265.00 Aligned_cols=295 Identities=23% Similarity=0.459 Sum_probs=250.2
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVT 192 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~ 192 (706)
-+|++++.|.+|++|...+|.+..++....+.|..+...|+++. |++++.. .|++||+++++ ++.++.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~--LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKD--LAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcch--hhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 47999999999999999999999999988999999999998775 7777665 59999998876 5889999999999
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
++.|..+|+.+++|++||++++||++...+.+.+.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--------------------------------------------- 122 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--------------------------------------------- 122 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc---------------------------------------------
Confidence 99999999999999999999999998643332222
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (311)
T KOG0315|consen 123 -------------------------------------------------------------------------------- 122 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
+..+|.++. ..|+... |++|..+|.|++||+....
T Consensus 123 ------------------------------------------~~spVn~vv--lhpnQte-Lis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 123 ------------------------------------------HNSPVNTVV--LHPNQTE-LISGDQSGNIRVWDLGENS 157 (311)
T ss_pred ------------------------------------------CCCCcceEE--ecCCcce-EEeecCCCcEEEEEccCCc
Confidence 223444443 4444444 8888888899999988776
Q ss_pred EEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 433 CVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 433 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
+...+ +.....|.++.+.|+|. +++.+...|..++|++.... ....+.+...+..|...+..+.+|||+++||+
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~----~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQ----TASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCC----ccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 55543 44567899999999998 89999999999999998732 23344566678899999999999999999999
Q ss_pred eeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 512 GSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++.|.+++||+..+. +....+.+|...+...+||.|+++|++++.|+.+++||+..++.++.+.+|.....+++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999988 6777889999999999999999999999999999999999999999999998888777653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=292.27 Aligned_cols=326 Identities=25% Similarity=0.406 Sum_probs=285.5
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eE--EEee----------cccceEEEEEEecCCCEEEEE
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CV--ATLD----------KHFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~--~~~~----------~~~~~v~~~~~~~~~~~l~~~ 206 (706)
..|..+|.+.+|+|-.+ .++++|+.|-..++|++.... .. ..++ .....|++++|+.+|.+|++|
T Consensus 175 l~~~~~V~~~~WnP~~~-~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRD-GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred ccCCCceEEEecCchhh-hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 34999999999999754 358999999999999987511 11 1111 123579999999999999999
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
..||.+++|+....
T Consensus 254 ~~~G~~riw~~~G~------------------------------------------------------------------ 267 (524)
T KOG0273|consen 254 SEDGEARIWNKDGN------------------------------------------------------------------ 267 (524)
T ss_pred ecCcEEEEEecCch------------------------------------------------------------------
Confidence 99999999986421
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
T Consensus 268 -------------------------------------------------------------------------------- 267 (524)
T KOG0273|consen 268 -------------------------------------------------------------------------------- 267 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
....+..|.++|.++. +...+.+ +++++.|+++.+||..++...+.+..|..+-..
T Consensus 268 ---------------------l~~tl~~HkgPI~slK--Wnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 268 ---------------------LISTLGQHKGPIFSLK--WNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred ---------------------hhhhhhccCCceEEEE--EcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 1124556888888887 6677777 999999999999999999999999999888778
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 526 (706)
+.|-.+.. +++.+.|+.|+++.+.... +...+.+|.++|.++.|.|.|.+|++++.|++++||.....
T Consensus 324 VdW~~~~~--F~ts~td~~i~V~kv~~~~----------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 324 VDWQSNDE--FATSSTDGCIHVCKVGEDR----------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eEEecCce--EeecCCCceEEEEEecCCC----------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 88887754 9999999999999998654 67778889999999999999999999999999999999999
Q ss_pred cEEEEEeecCCcEEEEEEccCC---------CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 527 VSVVTFRGHKRGIWSVEFSPVD---------QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.....+..|...|..+.|+|+| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|+|||+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 9999999999999999999975 4799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 598 ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.||.|.+|+.++++.++.+.+ .+.|..++|+.+|.+|..+-.||.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999976 5679999999999999999999999998874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=279.36 Aligned_cols=340 Identities=19% Similarity=0.303 Sum_probs=283.0
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.-+..|..|+..|.+++.+|+.+++|+|+.|..-++|+..+|.....+.+|+..|+++.|+.+|.. |++|..+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl--LATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL--LATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE--EEecCCCccEEE
Confidence 345678889999999999999999999999999999999999999999999999999999998876 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
|...++.....+......+.-|.|+|.+..|+.|+.||.+.+|.+.++.
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------------------------- 181 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------------------------- 181 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-------------------------------
Confidence 9999999988887777889999999999999999999999999876431
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
T Consensus 182 -------------------------------------------------------------------------------- 181 (399)
T KOG0296|consen 182 -------------------------------------------------------------------------------- 181 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
..+.+.+|..++++=. +.|++++
T Consensus 182 -------------------------------------------------------~~kv~~Gh~~~ct~G~--f~pdGKr 204 (399)
T KOG0296|consen 182 -------------------------------------------------------LCKVMSGHNSPCTCGE--FIPDGKR 204 (399)
T ss_pred -------------------------------------------------------eeeEecCCCCCccccc--ccCCCce
Confidence 1124556666666666 8899888
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
++++..||+|++||+.+++++..+.. .....+++.++..+. .++.|..++.+++-+...++....... .......
T Consensus 205 -~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-~~~~g~~e~~~~~~~~~sgKVv~~~n~--~~~~l~~ 280 (399)
T KOG0296|consen 205 -ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-TLTKGNSEGVACGVNNGSGKVVNCNNG--TVPELKP 280 (399)
T ss_pred -EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-eeEeccCCccEEEEccccceEEEecCC--CCccccc
Confidence 99999999999999999999887763 344567788887766 788888888888776655432111110 0111112
Q ss_pred ecCc---ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGK---DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.+.. .|..+.++..-.+.|+|+-||+|.|||+...++...+. |..+|+.+.|-+ ..+|++++.+|.|+.||.++|
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 2333 34445555567889999999999999998877666555 889999999998 789999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+++.++.+|...|.+++++|+.+++++++.|++.+||++.
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=287.27 Aligned_cols=324 Identities=25% Similarity=0.421 Sum_probs=277.2
Q ss_pred ccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCC--Ce--EEEEee----------CCCCcEEEEEEcCCCCceEEEEE
Q 005254 100 GHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDG--GF--CTHYFK----------GHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~--~~--~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
.|..+|.+.+|+|-.. .+++++.|...++|++.. .. ....++ .....|++++|+.+|.. |++|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~--LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL--LATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe--EEEe
Confidence 3999999999999666 899999999999999864 11 111111 13467999999998886 9999
Q ss_pred ecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 165 SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
+.||.+++|+. .|..+.++..|.++|.++.|+.+|.+|++++.|+++.+||..++...+.++.
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~---------------- 316 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF---------------- 316 (524)
T ss_pred ecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee----------------
Confidence 99999999996 7888889999999999999999999999999999999999876554433221
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
T Consensus 317 -------------------------------------------------------------------------------- 316 (524)
T KOG0273|consen 317 -------------------------------------------------------------------------------- 316 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 404 (706)
|..+-..++
T Consensus 317 ----------------------------------------------------------------------~s~~~lDVd- 325 (524)
T KOG0273|consen 317 ----------------------------------------------------------------------HSAPALDVD- 325 (524)
T ss_pred ----------------------------------------------------------------------ccCCccceE-
Confidence 222211222
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.. +.. +++.+.|+.|+++.+....++.++.+|.+.|.++.|.|.+. +|++++.|+++++|......
T Consensus 326 -W~~-~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~--------- 392 (524)
T KOG0273|consen 326 -WQS-NDE-FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSN--------- 392 (524)
T ss_pred -Eec-Cce-EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCc---------
Confidence 222 222 89999999999999999999999999999999999999988 99999999999999976543
Q ss_pred ceeEEEeecCcceEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 485 KAKAVVAAHGKDINSLAVAPND---------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
....+.+|...|..+.|+|.| ..+++++.|++|++||+..+.++..|..|..+|.+++|+|+|+++|+|+
T Consensus 393 -~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 393 -SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred -chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 566778899999999999954 5899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
.||.|.+|+.++++..+.+. ..+.|..++|+.+|.+|..+-.|+.+.+.|++
T Consensus 472 ~dg~V~iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999999999987 45679999999999999999999999999875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=269.17 Aligned_cols=491 Identities=17% Similarity=0.213 Sum_probs=362.3
Q ss_pred eeeeeeecc------ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc-------
Q 005254 15 VLQQFYGGG------PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------- 81 (706)
Q Consensus 15 ~~~~~~~~~------~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------- 81 (706)
.++-+|+-. ++-+-|.|.++.+. .....+|+.+...+ +...||...|.|++.+||.-.+|+|-..
T Consensus 55 ~LewvygYRG~dcR~Nly~lptgE~vyfv-A~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~ 132 (626)
T KOG2106|consen 55 KLEWVYGYRGVDCRNNLYLLPTGELVYFV-AAVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPL 132 (626)
T ss_pred eeEEEEeecceeeeceeEEccCccEEEEe-ccEEEEEeehhhhc-ccccCCCCceEEEeecCCceeeccCcccccCCCcC
Confidence 455555443 77788888766554 56778888755443 5577899999999999999888876333
Q ss_pred -CeEEEEECCCCeEEEEeeccCCCeEEEEECC--CCCEEEEe--cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 82 -REIRVWDLSTLKCLRSWKGHDGPAIGMACHP--SGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 82 -~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
..++|||..+..-+..+......|+|++||+ .|.+|+.. +.+..+.+||++.+......+..+..|....|+|.+
T Consensus 133 ~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd 212 (626)
T KOG2106|consen 133 QPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTD 212 (626)
T ss_pred CCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCC
Confidence 3699999988888888888889999999998 45566665 356779999999998888888888899999999987
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEe---ec-ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATL---DK-HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
.. ++.....|.+.+|+++.+...+.. .. ....|.|++|.++|. +++|..+|.|.+|+..+.+..+..
T Consensus 213 ~n--liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~------ 283 (626)
T KOG2106|consen 213 PN--LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV------ 283 (626)
T ss_pred Cc--EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe------
Confidence 66 555556678999999888765543 22 236799999999986 889999999999997654433221
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
T Consensus 284 -------------------------------------------------------------------------------- 283 (626)
T KOG2106|consen 284 -------------------------------------------------------------------------------- 283 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-eeeEe
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-SCSYV 391 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-~~~~~ 391 (706)
..|++.|.+++... ++.+ +++..|..|..||-.-. .....
T Consensus 284 -------------------------------------~aH~ggv~~L~~lr-~Gtl-lSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 284 -------------------------------------HAHDGGVFSLCMLR-DGTL-LSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred -------------------------------------eecCCceEEEEEec-CccE-eecCccceEEecccccccccccc
Confidence 13444455554442 3333 33777777777772211 11224
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
++...+++..+. +.... ++.|...+.|..=.++++-.+ ...+|......++.+|+.. .+++++.|+.+++|+
T Consensus 325 lPe~~G~iRtv~----e~~~d-i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 325 LPEQFGPIRTVA----EGKGD-ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN- 396 (626)
T ss_pred CchhcCCeeEEe----cCCCc-EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChh-heeeccCcceEEEcc-
Confidence 455666776664 22333 777777777766666655443 3457888999999999865 899999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.. ...-......+..|+.|+|.| .++.|+..|...+.|.++...+..-. ...+++++.|+|+|.+|
T Consensus 397 ~~------------k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 397 DH------------KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFL 462 (626)
T ss_pred CC------------ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEE
Confidence 21 222223345678999999999 99999999999999999855555444 48999999999999999
Q ss_pred EEecCCCcEEEEEcCCCce-EEEE-eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--------------E
Q 005254 552 ITASGDKTIKIWSISDGSC-LKTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--------------T 615 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~ 615 (706)
|.|+.|+.|+||.+..+.. .... ..+..+|+.+.||+|+++|.+-+-|-.|..|....-+.+. -
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 9999999999999875533 2222 2344899999999999999999999999999543222111 1
Q ss_pred e----ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 616 Y----DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 616 ~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
+ -.|...|..++-+.+.+++++|.+.|.|++|..+-....+.
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 1 13566677888888999999999999999999876665543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=275.63 Aligned_cols=289 Identities=28% Similarity=0.478 Sum_probs=268.2
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.++..++..+.|.| ....+++++.+++|++||..+++....+++|...+..+. +...++. +++++.|-.+.
T Consensus 100 l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~--~~a~Gk~-l~tcSsDl~~~ 175 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDIS--FDASGKY-LATCSSDLSAK 175 (406)
T ss_pred chhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEE--EecCccE-EEecCCccchh
Confidence 3345667788888888865 778889999999999999999999999999999999887 7777776 99999999999
Q ss_pred EEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 425 LWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 425 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+||..+ .++++.+.+|...|.+++|-|.|. ++++++.|.+|+.|++..+. +...+.+|...+..++.+
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~----------cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY----------CVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce----------eEEeccCchHhEEEEEec
Confidence 999987 567777889999999999999986 99999999999999999875 788899999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC---------------CCEEEEecCCCcEEEEEcCCC
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV---------------DQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.||.++++++.|.++++|-+.+++....++.|..+|.+++|.|. ++++.+++.|++|++||+.++
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 99999999999999999999999999999999999999999763 258999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++++++...+..|..-|+++.|..+-.+++||+-|..+++|.
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=279.54 Aligned_cols=412 Identities=19% Similarity=0.304 Sum_probs=320.8
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+++..++..|.++.|+|...+++++-.+|.|.|||.++...+..+.-...+|.+..|.+ +.+++++|+.|..|+||+.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEecCCceEEEEec
Confidence 34555889999999999999999999999999999999999999999999999999998 5567999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
.+++.+..+..|...|.+++.+|.-.++++++.|-.|++||.+..
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----------------------------------- 129 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----------------------------------- 129 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-----------------------------------
Confidence 999999999999999999999999999999999999999998642
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
T Consensus 130 -------------------------------------------------------------------------------- 129 (794)
T KOG0276|consen 130 -------------------------------------------------------------------------------- 129 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
......+.+|..-|.+++|.|.+.+.+++++-|++|++|.+.+..+..++.+|...|.|++... ..++.+++
T Consensus 130 -------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~-~gdkpylI 201 (794)
T KOG0276|consen 130 -------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT-GGDKPYLI 201 (794)
T ss_pred -------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEecc-CCCcceEE
Confidence 2233566788899999999999999999999999999999999999999999999999999422 23345699
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+|++|..+++||.++..+++++.+|...|..+.|+|.-+ ++++|+.||++++|+..+.+ ....+.-.-.
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~----------lE~tLn~gle 270 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYK----------LEKTLNYGLE 270 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCccee----------hhhhhhcCCc
Confidence 999999999999999999999999999999999999977 99999999999999977654 2333334455
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--------c--------------------------------
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------H-------------------------------- 535 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~-------------------------------- 535 (706)
.+.|++..+.++.+++|..+|.|.+ .+-..++...+.. |
T Consensus 271 RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs 349 (794)
T KOG0276|consen 271 RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS 349 (794)
T ss_pred eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccc
Confidence 6888888888888888887776554 2221111111110 0
Q ss_pred -CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 536 -KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 536 -~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.--...++-+|+|++++++ .||.-.||..-.. . ..+.+.-....|++|.+..++-.+++.|+++ ++.+...
T Consensus 350 ~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTala~--R---nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k 421 (794)
T KOG0276|consen 350 VEIYPQTLAHSPNGRFVVVC-GDGEYIIYTALAL--R---NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK 421 (794)
T ss_pred cccchHHhccCCCCcEEEEe-cCccEEEEEeeeh--h---hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc
Confidence 0011235667888766654 5777888763111 1 1133455677888886777777778888888 6677666
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
.+..... ...--.|. |+....++.+++||-+++.....
T Consensus 422 si~~~~~----~e~i~gg~-Llg~~ss~~~~fydW~~~~lVrr 459 (794)
T KOG0276|consen 422 SIRPDMS----AEGIFGGP-LLGVRSSDFLCFYDWESGELVRR 459 (794)
T ss_pred ccccccc----eeeecCCc-eEEEEeCCeEEEEEcccceEEEE
Confidence 6643211 11112344 44444566789999877765443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=271.67 Aligned_cols=305 Identities=27% Similarity=0.470 Sum_probs=271.6
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
...+.+.+|..+|+.+-|+|+-..++++++|++|++||..++++.+.+++|...+..++|+..|++||+++.|-.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++ .+++..+.+|...|.+++|-|.|+. +++++.|.+|+.|+..++.++.++++|...|..+..+.||..+++++.|
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~--ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDH--ILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCe--eeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 987 5677788899999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 210 KVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
.+|++|-+.++++...+..+ .++..+.+.|.......
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i------------------------------------------ 294 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI------------------------------------------ 294 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcch------------------------------------------
Confidence 99999999999877776554 45666666555431100
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
....-..+.+++
T Consensus 295 --------------------------------------------------------------------~~at~~~~~~~~ 306 (406)
T KOG0295|consen 295 --------------------------------------------------------------------SEATGSTNGGQV 306 (406)
T ss_pred --------------------------------------------------------------------hhccCCCCCccE
Confidence 000001125578
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
+.+++.|+.|++||+.++.++..+.+|...|..++ +.|.|++ ++++.+|+++++||++++++...+..|..-++++.
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a--f~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA--FSPGGKY-ILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceeeeeE--EcCCCeE-EEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 99999999999999999999999999999999998 8888877 99999999999999999999999999999999999
Q ss_pred EecCCCeEEEEecCCCeEEEEEe
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
|..+.. ++++|+-|.++++|..
T Consensus 384 fh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCc-eEEeccccceeeeeec
Confidence 999876 9999999999999964
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=298.55 Aligned_cols=246 Identities=30% Similarity=0.517 Sum_probs=220.5
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
+...|.........+.+|.++|.... |+|+.+. |+++++|+++|+|.+.+...+..+++|..+|..+.|+|.|- ++
T Consensus 433 ~~~~D~~~~~~~~~L~GH~GPVyg~s--FsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YF 508 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSGPVYGCS--FSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YF 508 (707)
T ss_pred hhhccccCCceeEEeecCCCceeeee--ecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EE
Confidence 34445555556667899999999998 8888887 99999999999999999999999999999999999999976 99
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 537 (706)
++++.|++-++|...... +.+.+.+|-+.|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+|.+
T Consensus 509 atas~D~tArLWs~d~~~----------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNK----------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred EecCCCceeeeeecccCC----------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 999999999999987643 7788899999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------
Q 005254 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 611 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 611 (706)
+|++++|||+|++|++|+.||.|.+||+.+++++..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986321
Q ss_pred ------------------EEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 612 ------------------CIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 612 ------------------~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
++..+..-..+|..+.|....-.|++
T Consensus 659 ~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~ 702 (707)
T KOG0263|consen 659 HISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAV 702 (707)
T ss_pred ccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEe
Confidence 44555556678888888765544443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=276.53 Aligned_cols=539 Identities=18% Similarity=0.268 Sum_probs=392.7
Q ss_pred ceEEcCCCC---EEEEeeCC-eEEEEEccCCe--EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EE
Q 005254 24 PLVVSSDGS---FIACACGE-SINIVDLSNAS--IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CL 95 (706)
Q Consensus 24 ~~~~s~dg~---~l~~~~~~-~i~i~d~~~~~--~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~ 95 (706)
|+.+-|+.+ ++++|..+ .|.+|.++... .+..+.+|... +++++...........|+.+.+||.+..+ +.
T Consensus 59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~ 136 (764)
T KOG1063|consen 59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLL 136 (764)
T ss_pred EEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeee
Confidence 777778777 56666555 89999998443 34566775554 55555444444444689999999996555 33
Q ss_pred EEeecc--CCCeEEEEECCCC-C-EEEEecCCCcEEEEECCCC--eEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCC
Q 005254 96 RSWKGH--DGPAIGMACHPSG-G-LLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDA 168 (706)
Q Consensus 96 ~~~~~~--~~~v~~~~~s~~~-~-~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg 168 (706)
..+.-. ..-..|+++.|+. . .+|.|+.+..|.++.-... +.+..+.+|...|.+++|...+. ..+|++++.|.
T Consensus 137 ~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~ 216 (764)
T KOG1063|consen 137 AVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDR 216 (764)
T ss_pred hheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCce
Confidence 333322 2233566677733 3 4555677777888775533 45677899999999999987665 78899999999
Q ss_pred eEEEEECCCCe---------------------eEEE----------eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 169 TVRVWDLLAKK---------------------CVAT----------LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 169 ~i~vwd~~~~~---------------------~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.|++|.+.-+. .... +.+|...|.++.|+|.+..|++++.|.++.+|..
T Consensus 217 yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~p 296 (764)
T KOG1063|consen 217 YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKP 296 (764)
T ss_pred EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEec
Confidence 99999764221 1111 2489999999999999999999999999999987
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+..-+..-. +..|
T Consensus 297 d~~tGiWv~~----------------------------------------vRlG-------------------------- 310 (764)
T KOG1063|consen 297 DENTGIWVDV----------------------------------------VRLG-------------------------- 310 (764)
T ss_pred CCccceEEEE----------------------------------------EEee--------------------------
Confidence 6542221100 0000
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
+......++....++|+++.+++-+..|..++|... ............+|-..|.++.|.| .+.++++.+.|.+
T Consensus 311 -e~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~----d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQT 384 (764)
T KOG1063|consen 311 -EVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK----DKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQT 384 (764)
T ss_pred -cccccccceeeEEEcCCCCEEEEecccCcEEEEecc----CccceeeccccccccccceeeeecC-CCCEEEEeccccc
Confidence 111334567888899999999999999999999822 2224455567789999999999998 5669999999999
Q ss_pred EEEEeCCC----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----------------------
Q 005254 378 VQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------------------- 430 (706)
Q Consensus 378 i~~~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------------- 430 (706)
-+++-.-. ...+...+-|...+.|++ +.+. +..+++|.+...+|+|+...
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~--~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g 461 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLS--FVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG 461 (764)
T ss_pred eeeecccccccceeeecccccccccceeee--hccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence 99986652 223444566888899997 5554 44489999999999996321
Q ss_pred --------------------ceE---------------------------------EEEEeCCCcCeEEEEEecCCCeEE
Q 005254 431 --------------------RCC---------------------------------VGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 431 --------------------~~~---------------------------------~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
|.. +..+-+|...|.+++.+|+++ ++
T Consensus 462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-li 540 (764)
T KOG1063|consen 462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LI 540 (764)
T ss_pred cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EE
Confidence 000 011227889999999999987 88
Q ss_pred EEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc----E
Q 005254 458 VSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV----S 528 (706)
Q Consensus 458 ~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~ 528 (706)
++++.. ..|++|+...-. ....+..|.-.|+.++|||||++|++.+.|+++.+|...... .
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~----------~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWL----------QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred eehhhhCCccceEEEEEeccchh----------hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh
Confidence 888754 458999876532 455688899999999999999999999999999999875432 2
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC--ceEEE--EeecccCEEEEEEEeC-----CCEEEEEeCC
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG--SCLKT--FEGHTSSVLRASFLTR-----GAQIVSCGAD 599 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~~~~~i~~~~~s~~-----~~~l~~~~~d 599 (706)
....+.|..-|.+..|+|++.+++|++.|.+|++|..... +.+.. ...+..+|+++++.|- +..++.|-+.
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 3336779999999999999999999999999999999877 44433 2347789999999872 2367889999
Q ss_pred CCEEEEECCC-------Ce-----EEEEeccCCCcEEEEEEcCC----------CCEEEEEeCCCcEEEEECC
Q 005254 600 GLVKLWTVRT-------GE-----CIATYDKHEDKIWALAVGKK----------TEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 600 g~i~iwd~~~-------~~-----~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~vw~~~ 650 (706)
|.|.+|.... +. .+....+|.+.|+.+.|+|. ...|++|+.|.+++++++.
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999998651 11 11122367788999999975 2356999999999999875
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=275.01 Aligned_cols=293 Identities=23% Similarity=0.361 Sum_probs=249.5
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
.+.+..|...|.-+.||++|+|||+++.|.+..||++..- ++.+++.+|..+|..+.||||.+||++++.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 4677889999999999999999999999999999988543 5678899999999999999999999999999999999
Q ss_pred ECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEe
Q 005254 130 DVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 207 (706)
|+.+|...+.+. ++...+.+++|.|||.. +++|+.|+.+..||+. |+.+...++-. ..|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~--~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFR--FVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCce--eEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999887765 34688999999999998 9999999999999984 45455554432 5699999999999999999
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.|..+++++..+......+..+.
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~--------------------------------------------------------- 396 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQ--------------------------------------------------------- 396 (519)
T ss_pred cccceeeechhhhhhhccccccC---------------------------------------------------------
Confidence 99999999987654433222222
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
++.+++.+ .+++
T Consensus 397 -------------------------------------------------------------------~its~~iS-~d~k 408 (519)
T KOG0293|consen 397 -------------------------------------------------------------------PITSFSIS-KDGK 408 (519)
T ss_pred -------------------------------------------------------------------ceeEEEEc-CCCc
Confidence 22233322 2556
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++.+.-.+..+.+||++....+..+.||...-.-+..||-..+..++++|++|+.|+||+..+++++..+.+|...|.++
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV 488 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence 66666677889999999888888999999988888888888887789999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|+|..+.++++++.||+|+||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999999998653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=300.99 Aligned_cols=277 Identities=28% Similarity=0.472 Sum_probs=243.0
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+.+..|++ +..++|.|..+..|++|.+...+.. .++.... + . .+=+.+.|-.+...|.....
T Consensus 378 ~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~-l-----------~-~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 378 YQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLK-KLKDASD-L-----------S-NIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCcceeEeecC-CcchhhccccccEEEEEecchhhhc-cccchhh-h-----------c-cccccccchhhhhccccCCc
Confidence 34555666654 7779999999999999998865322 2211110 0 0 02234445557777877777
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
....+.+|.++|..+.|+|+.+ +|++++.|+++++|.+.+.. ......+|..+|..+.|+|.|-++|++
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s----------~~V~y~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWS----------CLVIYKGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred eeEEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccce----------eEEEecCCCcceeeEEecCCceEEEec
Confidence 7788999999999999999976 99999999999999998764 777788999999999999999999999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
+.|++-++|......+.+.+.+|...|.|+.|+|+..++++|+.|.++|+||+.+|..++.|.||.++|++++|||+|++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
|++|+.||.|.+||+.+++++..+.+|.+.|.++.||.||..||++|.|++|++||+......
T Consensus 592 LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999999999999999999999999998766554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=263.70 Aligned_cols=551 Identities=14% Similarity=0.127 Sum_probs=395.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
.+.--..+|++||||.+.+.||.+-.+|.|.||++..+= +...+.++ +..|.+++|++ +..|.+.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 334456899999999999999999999999999998753 44455554 57899999995 5578888889999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE--EeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
++++...+....+.|++++.+|.++. ++.|++||.+...+...++... .+....+.+.+++|.|++..+++|+.||
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~--l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTI--LAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccce--EEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 99999999999999999999998876 9999999988888887776554 3455678999999999999999999999
Q ss_pred EEEEEeCCCCcceeee-----cCc----ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEEC
Q 005254 211 VVNLWDLRDYSCKLTV-----PTY----EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 281 (706)
.|++||...+..+... ... .-+..+.+..++ .+++|+..|+|.+||.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------------------------tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------------------------TIASGDSAGTVTFWDS 232 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC------------------------cEEEecCCceEEEEcc
Confidence 9999999988776521 111 124555565555 6999999999999999
Q ss_pred CCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE
Q 005254 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 361 (706)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 361 (706)
..+.+.+.. .-+...+.+++..++++.+++++.|+.+..|...+.... .........|...+.+++.
T Consensus 233 ~~gTLiqS~----------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 233 IFGTLIQSH----------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred cCcchhhhh----------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccccCCcccceeeee
Confidence 988655433 234567899999999999999999999999998876552 4455566678888899998
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---------e
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---------C 432 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~ 432 (706)
.+. .++.++.|..+.+-.....+..........+-.+.. .....+. +..--.+..+.+|.+.+. .
T Consensus 300 ~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v--~~a~~~~-L~~~w~~h~v~lwrlGS~~~~g~~~~~~ 373 (691)
T KOG2048|consen 300 IEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRV--SVAPENR-LLVLWKAHGVDLWRLGSVILQGEYNYIH 373 (691)
T ss_pred ecc---eEEecceeeEEEEccccccCchhhhcccccccccee--ecCccce-EEEEeccccccceeccCcccccccChhh
Confidence 764 888888888888766554222111100000001111 1122222 333333455666765544 1
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
..+........|.+.+.+|+|+ ++ +-+.=...++|.++... ...................+.|+-|++.++.+
T Consensus 374 Llkl~~k~~~nIs~~aiSPdg~-~I-a~st~~~~~iy~L~~~~-----~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAISPDGN-LI-AISTVSRTKIYRLQPDP-----NVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred heeeecCCccceeeeccCCCCC-EE-EEeeccceEEEEeccCc-----ceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 2233344567899999999998 44 44444568888887532 11111112222233456778888888888877
Q ss_pred e-CCCcEEEEeCCCc--cEEEEEe--ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 513 S-QDRTACVWRLPDL--VSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 513 ~-~dg~i~i~d~~~~--~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
+ ....+.++++.+. +.+..+. +....|..+..||+|++||+.+.+|.|.+|++++.+...........++.++|+
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~ 526 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFS 526 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeecc
Confidence 7 6777888887654 2222222 245679999999999999999999999999998877655443455789999999
Q ss_pred e-CCCEEEEEeCCCCEEEEECCCCeEE-----------EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 588 T-RGAQIVSCGADGLVKLWTVRTGECI-----------ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 588 ~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
| +.+.|+.+..++.+.-||++..+.- ...+.....+..+.|+|..+..+..-..+.+.+.|..-..+.
T Consensus 527 ~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~~~lp~ 606 (691)
T KOG2048|consen 527 PFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFSLPLPS 606 (691)
T ss_pred ccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEecCCCCCc
Confidence 4 6678999999999999999432210 111223456888889887766555555667777777655544
Q ss_pred HHH
Q 005254 656 EEA 658 (706)
Q Consensus 656 ~~~ 658 (706)
.+.
T Consensus 607 ~~~ 609 (691)
T KOG2048|consen 607 DED 609 (691)
T ss_pred hhh
Confidence 443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=283.72 Aligned_cols=360 Identities=19% Similarity=0.345 Sum_probs=282.9
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
++.-+..|..++|+|...++.++-..|.|++||..-+.++..|..|.++|+.++|+|++.++++|++|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
++.++.+|-.-|..+.|++ .+.++++++.|.+|+||++++++++..+.+|...|.|..|+|...++++++-|.+|++|
T Consensus 85 clftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 9999999999999999999 45679999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcceeeecC--cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 216 DLRDYSCKLTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 216 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
|+...+.....+. .+....... ++ -+.++. +
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~--~~-------------------------dLfg~~--------------------D 195 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQG--NS-------------------------DLFGQT--------------------D 195 (1202)
T ss_pred eecchhccCCCCCCchhhhhcccc--ch-------------------------hhcCCc--------------------C
Confidence 9976554433222 000000000 00 000111 1
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
....+....+.+++.-++|.|.-..++.++.|..+.+|..... .........+|.+.|.++.|.| ..+++++.+
T Consensus 196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-----KaWEvDtcrgH~nnVssvlfhp-~q~lIlSns 269 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-----KAWEVDTCRGHYNNVSSVLFHP-HQDLILSNS 269 (1202)
T ss_pred eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-----cceeehhhhcccCCcceEEecC-ccceeEecC
Confidence 2223445677889999999999999999999999999998765 3455567889999999999987 778999999
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce----------------EEE--
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----------------CVG-- 435 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~-- 435 (706)
.|+.|++||+.....+..+....+...+++ ..|..+. +++|. |+-+.+|-++..+ .++
T Consensus 270 EDksirVwDm~kRt~v~tfrrendRFW~la--ahP~lNL-fAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~ 345 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRTSVQTFRRENDRFWILA--AHPELNL-FAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSY 345 (1202)
T ss_pred CCccEEEEecccccceeeeeccCCeEEEEE--ecCCcce-eeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEee
Confidence 999999999999999999988888888887 6666553 44444 4444455443211 111
Q ss_pred -----------EEeC---CCcCeEEEEEecCCCeEEEEecC-CCeEEEEEecCC
Q 005254 436 -----------VGTG---HMGAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGL 474 (706)
Q Consensus 436 -----------~~~~---~~~~v~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~ 474 (706)
.++. ...++.++.++|.....+++... ++.-.++.+...
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 1111 13567788888876655555443 455556665543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=280.34 Aligned_cols=286 Identities=24% Similarity=0.427 Sum_probs=258.3
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....|..+.|.| +++.|++++..|.+.+|+..+......++.|..+|.++. +++++.. +++|+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~--ws~~g~w-miSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMK--WSHNGTW-MISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEE--EccCCCE-EEEcCCCceEEecccchh
Confidence 345678888887 788999999999999999988888888999999999999 8888888 999999999999998766
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
........|...|++++|+|+.. .+++++.||+|+|||....+ ....+.+|+-.|.+++|+|...++++
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k----------ee~vL~GHgwdVksvdWHP~kgLias 239 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK----------EERVLRGHGWDVKSVDWHPTKGLIAS 239 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc----------hhheeccCCCCcceeccCCccceeEE
Confidence 55444455669999999999755 89999999999999998664 55567899999999999999999999
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC-C
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-G 590 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~ 590 (706)
++.|..|++||.+++.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+..+++|...++++.|+|- .
T Consensus 240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994 4
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 591 AQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.++.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.-..+
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 578899999999999998777776665 89999999999999999999999999999975443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=264.77 Aligned_cols=292 Identities=26% Similarity=0.441 Sum_probs=250.5
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
..+.+++|.+.|.|+++.|..+++++|+.|++|.|||+.+|++..++.+|-..|..+++|+-..||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
+..+.+..+.+|-..|.|++.+|.-+. +++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++++.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldv--l~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDV--LVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEecccccee--EEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999999999999997665 999999999999999999999999999999999999998889999999999
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||++.++...++..
T Consensus 301 vrlWDl~agkt~~tlt~--------------------------------------------------------------- 317 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH--------------------------------------------------------------- 317 (460)
T ss_pred EEEeeeccCceeEeeec---------------------------------------------------------------
Confidence 99999988775544432
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
|...+.+++..| ....+++
T Consensus 318 ------------------------------------------------------------hkksvral~lhP-~e~~fAS 336 (460)
T KOG0285|consen 318 ------------------------------------------------------------HKKSVRALCLHP-KENLFAS 336 (460)
T ss_pred ------------------------------------------------------------ccceeeEEecCC-chhhhhc
Confidence 222333333333 3444555
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--------CCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--------GHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~ 443 (706)
++. ..++-|++..+.....+.+|...+.++. ...+ .. +++|+++|.+..||.+++-..+... .....
T Consensus 337 as~-dnik~w~~p~g~f~~nlsgh~~iintl~--~nsD-~v-~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 337 ASP-DNIKQWKLPEGEFLQNLSGHNAIINTLS--VNSD-GV-LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred cCC-ccceeccCCccchhhccccccceeeeee--eccC-ce-EEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 544 5688899999999889999999999996 4433 34 8999999999999999987665542 13456
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+.+|...+. .|++|..|.+|++|.-+...
T Consensus 412 I~as~fDktg~-rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 412 IFASCFDKTGS-RLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eeEEeecccCc-eEEeccCCcceEEEeccccc
Confidence 88899999887 89999999999999876543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=272.51 Aligned_cols=543 Identities=17% Similarity=0.224 Sum_probs=378.4
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
.++|+|..-++.++-.+ .|.+||.+=+.++..+..|.++|..++|+|++.++++||+|-.|++|+.++.+++.++.+|-
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl 93 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL 93 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc
Confidence 49999999999998776 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--- 179 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--- 179 (706)
.-|+.+.|++.-.+++++++|.+|+|||+.+++++..+.+|..-|.|..|+|..+. +++++-|.+|+|||+..-+
T Consensus 94 DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl--IVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 94 DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL--IVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce--EEEecccceEEEEeecchhccC
Confidence 99999999999999999999999999999999999999999999999999997776 9999999999999984210
Q ss_pred --------------------------eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcce---eeecCcc
Q 005254 180 --------------------------CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK---LTVPTYE 230 (706)
Q Consensus 180 --------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~---~~~~~~~ 230 (706)
..+.+.+|...|+.++|+|.-.++++|+.|..|++|.+...+.- ....+..
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 22456789999999999999999999999999999998765432 2223455
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
.+.++.|.|... .+++.++|++|++||+....-.... ....+.+..+
T Consensus 252 nVssvlfhp~q~-----------------------lIlSnsEDksirVwDm~kRt~v~tf----------rrendRFW~l 298 (1202)
T KOG0292|consen 252 NVSSVLFHPHQD-----------------------LILSNSEDKSIRVWDMTKRTSVQTF----------RRENDRFWIL 298 (1202)
T ss_pred CcceEEecCccc-----------------------eeEecCCCccEEEEecccccceeee----------eccCCeEEEE
Confidence 677777777554 7899999999999999877443332 1224456777
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
+..|..+.++++ .|+-+.+|.+..++. ..++ .++.++.+- +..|+.+|+.+.+...
T Consensus 299 aahP~lNLfAAg-HDsGm~VFkleRErp-----------------a~~v----~~n~LfYvk--d~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 299 AAHPELNLFAAG-HDSGMIVFKLERERP-----------------AYAV----NGNGLFYVK--DRFIRSYDLRTQKDTA 354 (1202)
T ss_pred EecCCcceeeee-cCCceEEEEEcccCc-----------------eEEE----cCCEEEEEc--cceEEeeeccccccce
Confidence 777877755554 555566666654321 1111 133333333 6889999998755433
Q ss_pred --eeeCC---cceEEEeeeeeecCCCEEEEEeeCC-CcEEEEeCCCceEEEE---EeCCCcCeEEEEEecCCCeEEEEec
Q 005254 391 --VLAGH---SEIVLCLDTCALSSGKILIVTGSKD-NSVRLWDSESRCCVGV---GTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 391 --~~~~~---~~~i~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
.++.. ..+..++. +.|..+..+++...+ |...++.+........ -........++-...+ + +.+---
T Consensus 355 v~~lr~~g~~~~~~~sms--YNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarN-r-favl~k 430 (1202)
T KOG0292|consen 355 VASLRRPGTLWQPPRSLS--YNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARN-R-FAVLDK 430 (1202)
T ss_pred eEeccCCCcccCCcceee--eccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEec-c-eEEEEe
Confidence 23322 35666676 778777755554433 3444444332211000 0001112222222222 1 222222
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
.+..+.+-++.+.. ...+. ....+..+-+...|.+|+.. ...|.+||+...+.+..++ -..|..
T Consensus 431 ~~~~v~ik~l~N~v-----------tkkl~-~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vky 494 (1202)
T KOG0292|consen 431 SNEQVVIKNLKNKV-----------TKKLL-LPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKY 494 (1202)
T ss_pred cCcceEEecccchh-----------hhccc-CcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeE
Confidence 24445554444321 00000 11234455566667666553 4569999998888877776 467889
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--EEEEeccC
Q 005254 542 VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIATYDKH 619 (706)
Q Consensus 542 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~ 619 (706)
+.||+|..+++.-+. .+|.|.+. .-+.+.++. ..-.|.+-+|..+|-+|.+...- |+ |-+.+|. .++++
T Consensus 495 vvws~dm~~vAll~K-h~i~i~~k-kL~l~~sih-Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikTL--- 565 (1202)
T KOG0292|consen 495 VVWSNDMSRVALLSK-HTITIADK-KLELLCSIH-ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKTL--- 565 (1202)
T ss_pred EEEcCccchhhhccc-ceEEEEec-chhheecch-heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEec---
Confidence 999999988877655 46899885 345555553 23467778898887666655431 22 2233332 33333
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++.-.+. .|+.+..-..|+.+....++..+-.-
T Consensus 566 d~~iyitkv--~gn~V~cl~rd~~~~~~~IDptEy~F 600 (1202)
T KOG0292|consen 566 DKPIYITKV--KGNKVFCLNRDGEIECLTIDPTEYRF 600 (1202)
T ss_pred ccceEEEEe--eCCEEEEEecCCCeEEEeechHHHHH
Confidence 224444444 57788888889999999998776543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=251.90 Aligned_cols=289 Identities=22% Similarity=0.389 Sum_probs=259.5
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCC-CceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS-SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+...+.+|.+.|..+.|.| ++..+++++.|..|.+|+.. .-+....+.+|.+.|..+. +..++.. +++++.|.++
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~--~~~d~s~-i~S~gtDk~v 114 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELH--GMRDGSH-ILSCGTDKTV 114 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeee--eccCCCE-EEEecCCceE
Confidence 4456778999999999999 99999999999999999955 4455667889999999999 8888888 9999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+.||.++|+.++..+.|..-|.++.-+.-|..++.+++.|+++++||++... .........+++++.|.
T Consensus 115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-----------~~~t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-----------AIKTFENKYQLTAVGFK 183 (338)
T ss_pred EEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-----------hhhccccceeEEEEEec
Confidence 9999999999999999999999999887888899999999999999998653 11222345678999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC----CceEEEEeeccc
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD----GSCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~ 579 (706)
.++..+.+|+-|+.|++||++.+.....+.+|.++|+.+..+|+|.++.+-+.|.++++||++. .+++..+.+|..
T Consensus 184 d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h 263 (338)
T KOG0265|consen 184 DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH 263 (338)
T ss_pred ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchh
Confidence 9999999999999999999999999999999999999999999999999999999999999864 356788877643
Q ss_pred ----CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 580 ----SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 580 ----~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
....++|+|+++++.+|+.|..+++||......+..+.+|.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 456789999999999999999999999999899999999999999999999999999999999998743
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=243.54 Aligned_cols=295 Identities=24% Similarity=0.452 Sum_probs=244.3
Q ss_pred EEEeecCCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC---CeEEEEe-eccCCCeEEEEECCCCCEEEEecCCCcE
Q 005254 52 IKSTIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST---LKCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i 126 (706)
.++.+++|.+.+..++|+|- |..||+++.|..|+||+... ..+...+ .+|+..|++++|+|.|++||+++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45788999999999999998 89999999999999999984 3444444 3699999999999999999999999999
Q ss_pred EEEECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceEEEEEEecCCC
Q 005254 127 LVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 127 ~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
.||.-..+ +++..+.+|...|.+++|+++|.. ||+++.|..|-||.+..+ ++...++.|...|..+.|+|...
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~--LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNY--LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCE--EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99997654 678899999999999999998887 999999999999998744 57788999999999999999999
Q ss_pred EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEEC
Q 005254 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281 (706)
Q Consensus 202 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 281 (706)
+|++++.|++|++|+-...
T Consensus 164 lL~S~SYDnTIk~~~~~~d------------------------------------------------------------- 182 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDD------------------------------------------------------------- 182 (312)
T ss_pred eeEEeccCCeEEEEeecCC-------------------------------------------------------------
Confidence 9999999999999974310
Q ss_pred CCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE
Q 005254 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF 361 (706)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 361 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (312)
T KOG0645|consen 183 -------------------------------------------------------------------------------- 182 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 441 (706)
....+...+.+|...+.+++ |.+.+.. +++++.|++++||...+. ....|.
T Consensus 183 ----------------------ddW~c~~tl~g~~~TVW~~~--F~~~G~r-l~s~sdD~tv~Iw~~~~~----~~~~~s 233 (312)
T KOG0645|consen 183 ----------------------DDWECVQTLDGHENTVWSLA--FDNIGSR-LVSCSDDGTVSIWRLYTD----LSGMHS 233 (312)
T ss_pred ----------------------CCeeEEEEecCccceEEEEE--ecCCCce-EEEecCCcceEeeeeccC----cchhcc
Confidence 01233446777888888888 8888888 999999999999986532 123477
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACV 520 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i 520 (706)
..+..++|. ++ .+++++.|+.|++|.-......+. -.........|...|+++++.|. .++|++|+.||.|++
T Consensus 234 r~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~---~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 234 RALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPS---WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCch---HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 889999999 43 799999999999998764322111 11122244568889999999994 789999999999999
Q ss_pred EeCC
Q 005254 521 WRLP 524 (706)
Q Consensus 521 ~d~~ 524 (706)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=272.06 Aligned_cols=277 Identities=28% Similarity=0.555 Sum_probs=249.3
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...++++.| ++..+++|..|++|.+||..+..+...+.+|.+.+.|+. +. . .++++|+.|.+|++||.++++
T Consensus 197 skgVYClQY---DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--yd--~-rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--YD--E-RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEe---cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--cc--c-eEEEecCCCceEEEEeccCCc
Confidence 455677776 778899999999999999999999999999999999997 32 2 359999999999999999999
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
++.++-.|...|..+.|+.. ++++++.|.++.+||+.... .......+.+|...|+.+.|+ .++++++
T Consensus 269 ~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps-------~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT-------DITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred hhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch-------HHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 99999999999999999976 89999999999999998653 333566788999999999986 4599999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
+.|.+|++|++.+++.+.++.+|...|-|+.+. ++++++|+.|.+|++||+..|.+++.++||..-|.++.| |.+.
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~kr 412 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 412 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCce
Confidence 999999999999999999999999999988875 899999999999999999999999999999999999999 5679
Q ss_pred EEEEeCCCCEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 593 IVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+++|+.||.|+|||+.++. ++..+..|.+.|..+.| |...+++++.|.+|.+||+..+...
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999998764 44556689999999999 7778999999999999999888765
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=272.92 Aligned_cols=284 Identities=25% Similarity=0.423 Sum_probs=247.7
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 139 (706)
..+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|++++.++++|+.+|.|++|+..-.. ++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 4589999999999999999999999999986655555667899999999999999999999999999999986544 444
Q ss_pred eeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 140 FKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 140 ~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+.. |...|.+++|+|+... +++++.||+|+|||....+.-..+.+|.-.|.++.|+|.-.++++++.|..|++||.+
T Consensus 175 ~~ahh~eaIRdlafSpnDsk--F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSK--FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred hhHhhhhhhheeccCCCCce--eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 444 5599999999997766 9999999999999999988888899999999999999999999999999999999887
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+++++.
T Consensus 253 Sg~cl~-------------------------------------------------------------------------- 258 (464)
T KOG0284|consen 253 SGSCLA-------------------------------------------------------------------------- 258 (464)
T ss_pred Ccchhh--------------------------------------------------------------------------
Confidence 665443
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
T Consensus 259 -------------------------------------------------------------------------------- 258 (464)
T KOG0284|consen 259 -------------------------------------------------------------------------------- 258 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 379 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
.+.+|...|..+. |.++++. |++++.|..++++|+++.+.+..+++|...+++++|+|-...++.
T Consensus 259 ------------tlh~HKntVl~~~--f~~n~N~-Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 259 ------------TLHGHKNTVLAVK--FNPNGNW-LLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred ------------hhhhccceEEEEE--EcCCCCe-eEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 3445666677776 7788855 999999999999999999999999999999999999999888999
Q ss_pred EecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 459 SGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
+|+.||.|..|.+....+ ......+|...|.+++++|-|.+|++|+.|.+++.|.-.
T Consensus 324 sgg~Dgsvvh~~v~~~~p---------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEP---------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccCCCceEEEecccccc---------ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999999873221 334456799999999999999999999999999999743
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=256.20 Aligned_cols=293 Identities=24% Similarity=0.429 Sum_probs=267.5
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
....+.+.+|.+.|.++++.| .++++++++.|+++.+||+.+++....+.+|...+..++ +++...+ +++++.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va--vS~rHpY-lFs~gedk~ 216 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA--VSKRHPY-LFSAGEDKQ 216 (460)
T ss_pred ceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee--ecccCce-EEEecCCCe
Confidence 345567789999999999988 589999999999999999999999999999999999997 6666665 999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|+.||++..+.++.+.+|-+.|.+++..|.-. .|++++.|.++++||++... ....+.+|..+|..+.+
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~----------~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA----------SVHVLSGHTNPVASVMC 285 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc----------eEEEecCCCCcceeEEe
Confidence 99999999999999999999999999999866 89999999999999998764 77888999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
.|-...+++|+.|++|++||+..++-...+..|...|.+++.+|....+|+++.|. |+-|++..+..+..+.+|..-|+
T Consensus 286 ~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 286 QPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred ecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence 99888999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
+++...|| ++++|+++|.+..||.++|-..+..+ .....|.+.+|...|..|+||..|.+|.+|+-+..
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 99998876 89999999999999999987655542 12457899999999999999999999999986543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=246.16 Aligned_cols=292 Identities=25% Similarity=0.442 Sum_probs=245.5
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
++..+.+|.+.|..+.|+|+|.++|+|+.|..|.+|++ ..-+....+++|.+.|..+.|.+|+.. +++++.|.+|+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~--i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSH--ILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCE--EEEecCCceEEE
Confidence 44557889999999999999999999999999999996 445566778899999999999999887 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
||+++|+.++.+++|..-+.++.-+.-|. ++.+++.|+++++||+++.+.+++++...+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq-------------------- 176 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ-------------------- 176 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee--------------------
Confidence 99999999999999999999998665555 555777899999999987665554332111
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 177 -------------------------------------------------------------------------------- 176 (338)
T KOG0265|consen 177 -------------------------------------------------------------------------------- 176 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
++++. +...+.
T Consensus 177 -------------------------------------------------------------------ltAv~--f~d~s~ 187 (338)
T KOG0265|consen 177 -------------------------------------------------------------------LTAVG--FKDTSD 187 (338)
T ss_pred -------------------------------------------------------------------EEEEE--eccccc
Confidence 12222 333444
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
. +.+|+-|+.|++||+..+.....+.+|...|+.+..+++|. ++.+-+.|.++++||++..... ..+...+.
T Consensus 188 q-v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~------~R~v~if~ 259 (338)
T KOG0265|consen 188 Q-VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPS------QRCVKIFQ 259 (338)
T ss_pred c-eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCCC------CceEEEee
Confidence 4 88999999999999999999999999999999999999998 8999999999999999865321 11344444
Q ss_pred ecC----cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 492 AHG----KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 492 ~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+|. ......+|+|++..+.+|+.|+.+++||......+..+++|.+.|.+++|+|...+|.+++.|.+|++=.
T Consensus 260 g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 260 GHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 332 3456678999999999999999999999999999999999999999999999999999999999988743
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=275.86 Aligned_cols=294 Identities=22% Similarity=0.432 Sum_probs=248.6
Q ss_pred eEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCC-CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE
Q 005254 51 SIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 128 (706)
+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+.+++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45688999999999999999 889999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
||+++|+++..+. ....+.|+.|+|++ .+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.+.
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999887 66788999999997 567999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.+++|+.+....+..+....
T Consensus 363 dks~riWe~~~~v~ik~i~~~~---------------------------------------------------------- 384 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPE---------------------------------------------------------- 384 (503)
T ss_pred CccEEEEEcCCCccchhhcchh----------------------------------------------------------
Confidence 9999999987655443322111
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
.....++...| ++.+
T Consensus 385 ---------------~hsmP~~~~~P--------------------------------------------------~~~~ 399 (503)
T KOG0282|consen 385 ---------------MHTMPCLTLHP--------------------------------------------------NGKW 399 (503)
T ss_pred ---------------hccCcceecCC--------------------------------------------------CCCe
Confidence 01112222333 4445
Q ss_pred EEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 369 LAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
++.-+.++.+.++.+... .....+.+|...=.++.+.|+|++.. |++|..||.+.+||.++-+.+..++.|...+.
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 555555555555554322 22345677776666666669999998 99999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEE
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+.|+|.....+++++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999999888999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=237.59 Aligned_cols=279 Identities=24% Similarity=0.395 Sum_probs=219.8
Q ss_pred ceEEcCC-CCEEEEeeCC-eEEEEEccCC---eEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEE
Q 005254 24 PLVVSSD-GSFIACACGE-SINIVDLSNA---SIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCL 95 (706)
Q Consensus 24 ~~~~s~d-g~~l~~~~~~-~i~i~d~~~~---~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~ 95 (706)
.+|++|- |..||+++.+ .|+||+...+ .....+ .+|...|.++||+|.|++||+|+-|.++.||.-..+ +++
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv 98 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECV 98 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEE
Confidence 5999999 8989988887 8999998743 344444 479999999999999999999999999999987644 789
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC---eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG---FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
..+.||...|.+++||++|.|||+++.|.+|.||.+..+ ++...+..|...|..+.|+|..+. |++++.|++|++
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl--L~S~SYDnTIk~ 176 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL--LFSCSYDNTIKV 176 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce--eEEeccCCeEEE
Confidence 999999999999999999999999999999999999754 567788999999999999997664 999999999999
Q ss_pred EECC---CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc
Q 005254 173 WDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 173 wd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (706)
|+-. .-.+++++.+|...|.+++|.+.|..|++++.|+++++|.....- .......+..+.+. ++
T Consensus 177 ~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~-------- 244 (312)
T KOG0645|consen 177 YRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NG-------- 244 (312)
T ss_pred EeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec-cc--------
Confidence 9765 346889999999999999999999999999999999999864211 00111122222222 11
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
.+++++.|+.|+++.
T Consensus 245 ----------------~IaS~ggD~~i~lf~------------------------------------------------- 259 (312)
T KOG0645|consen 245 ----------------VIASGGGDDAIRLFK------------------------------------------------- 259 (312)
T ss_pred ----------------ceEeccCCCEEEEEE-------------------------------------------------
Confidence 355555555555543
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCC
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~ 384 (706)
....+....-....+....|...|.++.|.|...++|++++.||.+++|.+.
T Consensus 260 ---~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 260 ---ESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---ecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 3322222211222234456777999999999889999999999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=235.33 Aligned_cols=286 Identities=21% Similarity=0.379 Sum_probs=247.5
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
..+.+++|+++|.++.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC--CeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA--KKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.+|+....+.+|.+.|+.++|+.+.. ++++|+.|..+++||-++ .++++.+......|.++..+ +..++.|+.|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99999999999999999999998655 599999999999999875 46788887778889888875 4579999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+++.||++.+.....
T Consensus 165 GtvRtydiR~G~l~sD---------------------------------------------------------------- 180 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSD---------------------------------------------------------------- 180 (307)
T ss_pred CcEEEEEeecceeehh----------------------------------------------------------------
Confidence 9999999886653211
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
....+|.+++|++ +++..
T Consensus 181 -------------------------------------------------------------y~g~pit~vs~s~-d~nc~ 198 (307)
T KOG0316|consen 181 -------------------------------------------------------------YFGHPITSVSFSK-DGNCS 198 (307)
T ss_pred -------------------------------------------------------------hcCCcceeEEecC-CCCEE
Confidence 1234566666665 66777
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVA 448 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~ 448 (706)
.+++.++.+++.|-.+++.+..+.+|...-.-+++|+...... +++|++||.+.+||+.....+..+..+... +..++
T Consensus 199 La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth-V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~ 277 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH-VFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLS 277 (307)
T ss_pred EEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee-EEeccCCceEEEEEeccceeeeeeccCCceeEEeee
Confidence 7888889999999999999999999999999999888877777 999999999999999999999999888877 89999
Q ss_pred EecCCCeEEEEecCCCeEEEEE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
++|.-..++.+++ +.+.+|.
T Consensus 278 ~hp~~~~f~~A~~--~~~~~~~ 297 (307)
T KOG0316|consen 278 CHPTMDDFITATG--HGDLFWY 297 (307)
T ss_pred cccCccceeEecC--Cceecee
Confidence 9998764444332 3345554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=243.49 Aligned_cols=531 Identities=18% Similarity=0.202 Sum_probs=371.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe-EEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS-IKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~-~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+||+|.+.+.||.+-.+ .|.||++..+- +...+.|+ ...|.+++|++ +..|.+.+.+|.|.-||+.+++++..+..
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~ 108 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS 108 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC
Confidence 89999999999988765 99999998765 34566666 45899999995 45678888999999999999999999999
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
..+.|.+++.+|.+..++.|++||.+..++...++.... +...+++|.++.|+|++.. +++|+.||.|++||..++
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~--i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK--IAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE--EEecccCceEEEEEcCCC
Confidence 999999999999999999999999888888887776543 4446789999999999887 999999999999999998
Q ss_pred eeEEEee--------cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccc
Q 005254 179 KCVATLD--------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 179 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (706)
..+.... ....-|+++.|..++ .|++|...|.|.+||...+..++.... ...+.+++..+++.
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d------- 258 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED------- 258 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC-------
Confidence 8776221 134468888888665 799999999999999999988877765 44577777776655
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
.++++|.|+.+..+...+..-. .......+.+...+.+++..++ .++.+..|..+.
T Consensus 259 ----------------~vfsaGvd~~ii~~~~~~~~~~------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 259 ----------------RVFSAGVDPKIIQYSLTTNKSE------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLA 314 (691)
T ss_pred ----------------eEEEccCCCceEEEEecCCccc------eeeeccccCCcccceeeeeecc--eEEecceeeEEE
Confidence 7899999999998887766321 1122334556777888888777 777788888877
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee---------eEeeeCCcceEE
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---------SYVLAGHSEIVL 400 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~i~ 400 (706)
+-.....+..... . +...+..........+++..--....+.+|.+.+... .+........+.
T Consensus 315 i~~s~~~~~~~h~---~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs 386 (691)
T KOG2048|consen 315 ICSSREFKNMDHR---Q-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS 386 (691)
T ss_pred EccccccCchhhh---c-----cccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcccee
Confidence 7655542211110 0 0000001111111333444444445666676655411 122223344566
Q ss_pred EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-----EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+ .+|+++. ++.+. =..+++|.+.....+.. .....-....+.|+-++..++++.-....+..+++....
T Consensus 387 ~~a--iSPdg~~-Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps 462 (691)
T KOG2048|consen 387 CAA--ISPDGNL-IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS 462 (691)
T ss_pred eec--cCCCCCE-EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence 666 7888887 44443 23466666554222221 223344667788888877444444477788888877653
Q ss_pred CCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc-CCCEEEEe
Q 005254 476 DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITA 554 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 554 (706)
...... .........|..+..+|+|+++|+.+..|.|.+|++++.+...........|++++|+| +.+.|+.+
T Consensus 463 ~kel~~------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 463 FKELKS------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred hhhhhc------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEE
Confidence 221111 11114567799999999999999999999999999998876665545568899999995 66789999
Q ss_pred cCCCcEEEEEcCCCce-----------EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 555 SGDKTIKIWSISDGSC-----------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..++++.-||++..+. -.....-...+..+.|.|.....+..-..+-+.+.|.
T Consensus 537 ts~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~ 600 (691)
T KOG2048|consen 537 TSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDF 600 (691)
T ss_pred ecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEec
Confidence 9999999999943321 1111223356777888876554444444455666654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=283.23 Aligned_cols=293 Identities=32% Similarity=0.569 Sum_probs=249.8
Q ss_pred EeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 54 STIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 54 ~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
..+.+| ...|+++.|+++|+++++++.++.+++|+..+++ ..+.+.+|...|..++|+||++++++++.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 444444 7899999999999999999999999999998888 7888889999999999999999999999999999999
Q ss_pred C-CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 V-DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+ +.+..++.+.+|...|++++|+|+++ ++++|+.|++|++||+++++++..+.+|.+.|.+++|++++++|++++.|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9 66689999999999999999999985 49999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcce--eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 210 KVVNLWDLRDYSCK--LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 210 g~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
+.|++||+.++... ..+....
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------------------- 332 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAE--------------------------------------------------------- 332 (456)
T ss_pred ccEEEEECCCCceeeeecccCCC---------------------------------------------------------
Confidence 99999999887632 2211100
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
... .+..+.|.| ++.
T Consensus 333 ---------------------------------------------------------------~~~-~~~~~~fsp-~~~ 347 (456)
T KOG0266|consen 333 ---------------------------------------------------------------NSA-PVTSVQFSP-NGK 347 (456)
T ss_pred ---------------------------------------------------------------CCC-ceeEEEECC-CCc
Confidence 011 345555554 777
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee-ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA-LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVG 445 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~ 445 (706)
+++++..++.+++||+..+.....+.+|...+.|+.... .+.+.. +++|+.|+.|.+||..++..+..+.+| ...+.
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe-EEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 888888888888899888888888888887655553323 344554 999999999999999999999999999 89999
Q ss_pred EEEEecCCCeEEEEec--CCCeEEEEEec
Q 005254 446 AVAFSKKLQNFLVSGS--SDHTIKVWSFD 472 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~--~d~~i~i~~~~ 472 (706)
.+.+++... ++++++ .|+.+++|..+
T Consensus 427 ~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 999999976 788887 78999999754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=252.45 Aligned_cols=287 Identities=23% Similarity=0.331 Sum_probs=240.2
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--------ccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--------GHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
...-+.|..|||||+||++|+.||.|.+||..+|++...++ -+..+|.|+.||.|...||+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45567899999999999999999999999999998766543 3778999999999999999999999999999
Q ss_pred CCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 131 VDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 131 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+.+|.++..|. .|...|+|+.|+.|+.. +++++.|.++++.-+.+|++++.+++|.+.|+...|++||.++++++.|
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~Sq--iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQ--ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcch--hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999999987 89999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+|++|+.++.+++.++....
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~----------------------------------------------------------- 390 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLG----------------------------------------------------------- 390 (508)
T ss_pred ccEEEecCcchhhhhhccCCC-----------------------------------------------------------
Confidence 999999999988877654321
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
..-++..+...|.+...+
T Consensus 391 --------------------------------------------------------------~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 391 --------------------------------------------------------------TDYPVNSVILLPKNPEHF 408 (508)
T ss_pred --------------------------------------------------------------CcccceeEEEcCCCCceE
Confidence 112333444455566677
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
+++...+++++.++...-....-.+....-.-+..+.+|.+.+ +.+.+.|+.++.|...+|+....+.-|...+-.++-
T Consensus 409 iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H 487 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH 487 (508)
T ss_pred EEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence 7777777777777654333222222222212222338899998 899999999999999999999999999999999999
Q ss_pred ecCCCeEEEEecCCCeEEEEE
Q 005254 450 SKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~ 470 (706)
+|.. +++++-+.||.+++|.
T Consensus 488 HPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 488 HPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred Cccc-chhhhhcccchhhhcC
Confidence 9984 4999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=268.56 Aligned_cols=286 Identities=33% Similarity=0.569 Sum_probs=258.0
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.+.+|..++.++++.+ +++++++++.+|.+.+|++.+......+..|...+..+. +.++++. +++++.+|.+++|+
T Consensus 4 ~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA--ASADGTY-LASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEE--ECCCCCE-EEEEcCCCeEEEEE
Confidence 3457888999999987 578899999999999999999888888888988887777 7777766 88999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
..+++.+..+..|...+.++.|++++. ++++++.++.+.+|++.... ....+..|...+.+++++|++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK----------CLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE----------EEEEeccCCCcEEEEEEcCcCC
Confidence 999888888888999999999999965 78888889999999997432 4444557888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++++++.++.|++||+.+++....+..|...+.+++|+|+++.+++++.|+.|++||+.+++.+..+..|...+.++.|+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 99998889999999999999999999999999999999999999999999999999999999999887899999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
|++.++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9988888888899999999999999999999999999999999999999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.50 Aligned_cols=287 Identities=36% Similarity=0.660 Sum_probs=246.9
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
..+++|..+|++++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|+|+++++++++.++.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46778999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
++.+..+..|...+.++.|+|++. ++++++.+|.|.+||+.+++....+..|...+.+++|+|++.++++++.++.|+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 888888899999999999999854 477777799999999999999988988999999999999988888888799999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+||+++++...
T Consensus 161 i~d~~~~~~~~--------------------------------------------------------------------- 171 (289)
T cd00200 161 LWDLRTGKCVA--------------------------------------------------------------------- 171 (289)
T ss_pred EEEccccccce---------------------------------------------------------------------
Confidence 99976432211
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 172 -------------------------------------------------------------------------------- 171 (289)
T cd00200 172 -------------------------------------------------------------------------------- 171 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
.+..|...+.++. +.++++. +++++.++.+++||..+++.+..+..|...+.++.|+|++
T Consensus 172 -----------------~~~~~~~~i~~~~--~~~~~~~-l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 172 -----------------TLTGHTGEVNSVA--FSPDGEK-LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred -----------------eEecCccccceEE--ECCCcCE-EEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 1122334455555 6677666 7777779999999999988888887888999999999995
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
. ++++++.++.+++|++.... ....+..|...+.+++|+|+++++++++.||.+++|+
T Consensus 232 ~-~~~~~~~~~~i~i~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 Y-LLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred c-EEEEEcCCCcEEEEEcCCce----------eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4 77788789999999987542 4444557888999999999999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=228.53 Aligned_cols=284 Identities=19% Similarity=0.275 Sum_probs=249.3
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
+.+..+.+.|..+.|.. ++++.++++.+.++++|+...+.+++.+.+|...|..++ ...++.. +++++.|..+.+|
T Consensus 11 ~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~--~s~Dnsk-f~s~GgDk~v~vw 86 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA--LSSDNSK-FASCGGDKAVQVW 86 (307)
T ss_pred eeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc--ccccccc-cccCCCCceEEEE
Confidence 45567788899999876 889999999999999999999999999999999999988 6677777 9999999999999
Q ss_pred eCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
|.++|+.++.+.+|.+.|..+.|+.+.. .+++|+.|.++++||.+.... ++...+......|.++.++ +
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~--------ePiQildea~D~V~Si~v~--~ 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSF--------EPIQILDEAKDGVSSIDVA--E 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCC--------CccchhhhhcCceeEEEec--c
Confidence 9999999999999999999999999976 999999999999999987643 3455566666778888875 6
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE--EEE
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV--LRA 584 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--~~~ 584 (706)
..+++|+.||+++.||++.+......- ..+|+++.|++|++..+.++-|+++++.|-.+|++++.+.+|...- ..+
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 689999999999999999998876655 4579999999999999999999999999999999999999998643 445
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+++.....+++|++||.|++||+.+...+..+..|... |.++.+.|....+++++.. .+..|.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 77777889999999999999999999999999988887 8999999998888877644 455664
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=279.19 Aligned_cols=283 Identities=27% Similarity=0.480 Sum_probs=257.1
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC-C
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS-E 429 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~-~ 429 (706)
...+.++.|++ ++..++.++.++.+++|+..... ....+.+|...|..+. +++++.. +++++.|+++++||+ .
T Consensus 159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~--fs~d~~~-l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVA--FSPDGSY-LLSGSDDKTLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeE--ECCCCcE-EEEecCCceEEEeeccC
Confidence 56777788887 66669999999999999998777 6777789999999998 8899886 999999999999999 5
Q ss_pred CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
.+..++.+.+|...|++++|+|++ +++++|+.|++|++||++.++ ....+.+|...|++++|++++++|
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~----------~~~~l~~hs~~is~~~f~~d~~~l 303 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE----------CVRKLKGHSDGISGLAFSPDGNLL 303 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe----------EEEeeeccCCceEEEEECCCCCEE
Confidence 668999999999999999999999 599999999999999999754 888899999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCcc--EEEEEeecCCc--EEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccC---EE
Q 005254 510 CTGSQDRTACVWRLPDLV--SVVTFRGHKRG--IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS---VL 582 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~ 582 (706)
++++.|+.|++||+.++. ....+..+... ++++.|+|++.+++++..|+.+++||+..+.+...+.+|... +.
T Consensus 304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 999999999999999998 55677766655 999999999999999999999999999999999999998875 44
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGG--SDALVNLWHDS 650 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~ 650 (706)
+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 4455788999999999999999999999999999999 89999999999999999988 79999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=295.34 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=199.9
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
+.++. +.+....++++++.||.|++||+.+++.+..+..|...|.+++|+|....+|++++.|+.|++||+....
T Consensus 535 v~~l~--~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--- 609 (793)
T PLN00181 535 LSGIC--WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--- 609 (793)
T ss_pred eeeEE--eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---
Confidence 44444 5554444599999999999999999999999999999999999997544489999999999999997643
Q ss_pred CcccccceeEEEeecCcceEEEEEc-CCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
....+. +...+.++.|+ +++.++++|+.||.|++||+.+.. .+..+.+|...|.++.|. ++.+|++++.
T Consensus 610 -------~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 610 -------SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -------EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 223333 34578899995 579999999999999999998765 567788999999999997 6889999999
Q ss_pred CCcEEEEEcCC------CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-------------c
Q 005254 557 DKTIKIWSISD------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------------D 617 (706)
Q Consensus 557 dg~i~iwd~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~ 617 (706)
|++|++||+.. ..++..+.+|...+..+.|++++.+|++|+.|+.|++|+.....++..+ .
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~ 760 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD 760 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccC
Confidence 99999999974 3578889999999999999999999999999999999998766544322 2
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.|...|.+++|+|++..|++|+.||.|++|++
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 34567999999999999999999999999986
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=249.72 Aligned_cols=280 Identities=22% Similarity=0.371 Sum_probs=235.7
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCC---eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNA---SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~---~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
-+.||++|++||+++.+ +..||.+..- +..+++.+|..+|..+.||||.++|++|+.+..+.+||+.+|.+.+.+.
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 68999999999999998 6777876433 4578999999999999999999999999999999999999999988876
Q ss_pred c-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 100 G-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 100 ~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
. |...+.+++|.|||..+++|+.|+++..||++... +...++ ....|.+++.++||+. +++.+.|..|++++.++
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~--vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKY--VLLVTVDKKIRLYNREA 385 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcE--EEEEecccceeeechhh
Confidence 3 46889999999999999999999999999987543 444444 3467999999999987 77778999999999987
Q ss_pred CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhh
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
........ ...+|++++.|.+++++++.-.+..+.+||++....++....+..
T Consensus 386 ~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-------------------------- 438 (519)
T KOG0293|consen 386 RVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-------------------------- 438 (519)
T ss_pred hhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc--------------------------
Confidence 76655443 447899999999999999999999999999987665554432211
Q ss_pred ccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 258 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
T Consensus 439 -------------------------------------------------------------------------------- 438 (519)
T KOG0293|consen 439 -------------------------------------------------------------------------------- 438 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
..-+..-+|-..+..++++|+.|+.|++|+..+++.+..+.||...+.|++ +.|.+..++|++
T Consensus 439 ---------------~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs--wNP~~p~m~ASa 501 (519)
T KOG0293|consen 439 ---------------GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS--WNPADPEMFASA 501 (519)
T ss_pred ---------------cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe--cCCCCHHHhhcc
Confidence 011223344445778999999999999999999999999999999999999 889999999999
Q ss_pred eCCCcEEEEeCCC
Q 005254 418 SKDNSVRLWDSES 430 (706)
Q Consensus 418 ~~dg~i~i~d~~~ 430 (706)
++||+|+||-...
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999997653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=235.82 Aligned_cols=293 Identities=19% Similarity=0.306 Sum_probs=259.8
Q ss_pred eEecccCceeeEeeEeC--CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLG--EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~--~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+|..+|.+++|+| +++-+|++++.|+.-.+-+-+++.-+-.+.+|.+.|.... ...+ ....++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~--l~~n-a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSAT--LNKN-ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeee--cCch-hhhhhhhcccchhh
Confidence 45668999999999987 7888999999999999999999999999999999998774 3333 33378899999999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||.-+|..+..+. |..-|.+++|+.|.. +|++|+.+.-+++||++..+. +...+.+|...|..+.|..
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A---------pp~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA---------PPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccch-hhhccchHHHhhhhhccCCCC---------CchhhcCCCCcceeEEEec
Confidence 99999998888765 888999999999976 899999999999999987543 3445678999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 584 (706)
..+.+++.+.|++|++||.+++..+..+. .+.+|+++..+++|++|.++. .+.|.+||..+..+++.+. -...|.+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SA 230 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESA 230 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccccccc
Confidence 99999999999999999999999999988 577899999999999877764 4569999999999998887 45678999
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
.++|+...+++|++|..++.||..+|+.+..+ ++|.++|.|+.|+|||..-++|++||+|++|....++.-.
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 99999999999999999999999999999986 7999999999999999999999999999999998877553
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=249.47 Aligned_cols=287 Identities=25% Similarity=0.479 Sum_probs=242.3
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
....|.|+.+. ...+++|..|++|+|||..+..++..+.+|++.|.|+.|.. .++++|+.|.+|++||++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~----rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE----RVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc----eEEEecCCCceEEEEeccCCch
Confidence 45688998886 55699999999999999999999999999999999999953 3699999999999999999999
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
+.++-+|...|..+.|+. .++++++.|.++.+||+.....+.
T Consensus 270 l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it------------------------------------ 311 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDIT------------------------------------ 311 (499)
T ss_pred hhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHH------------------------------------
Confidence 999999999999999974 489999999999999987543111
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (706)
T Consensus 312 -------------------------------------------------------------------------------- 311 (499)
T KOG0281|consen 312 -------------------------------------------------------------------------------- 311 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
..+.+.+|...+..+.| +++++++++.|.++++|++.+.+.+..+.+|...|.|+. . ...++++|+.|
T Consensus 312 ----~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ----Y-r~rlvVSGSSD 379 (499)
T KOG0281|consen 312 ----LRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ----Y-RDRLVVSGSSD 379 (499)
T ss_pred ----HHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcccccceehh----c-cCeEEEecCCC
Confidence 11334556666666666 556999999999999999999999999999999999876 2 34459999999
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
.+|++||+..|.+++.+++|..-|.++.|... .+++|+.||+|++||+....... .+....+......|.+.|..+
T Consensus 380 ntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpr-a~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 380 NTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPR-APASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred ceEEEEeccccHHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCc-ccccchHHHhhhhccceeEEE
Confidence 99999999999999999999999999999876 69999999999999998764322 222333455566788899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEE
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSV 529 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 529 (706)
.|. ...+++++.|.+|.|||+.++.+-
T Consensus 456 QFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 456 QFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 984 668999999999999999877554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=287.10 Aligned_cols=308 Identities=22% Similarity=0.293 Sum_probs=240.8
Q ss_pred cCeEEEEECCCCeEEEEe-----eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----e----EEEEeeCCCCcE
Q 005254 81 SREIRVWDLSTLKCLRSW-----KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----F----CTHYFKGHKGVV 147 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v 147 (706)
+|.+++|+..+.+....+ ..|...|.+++|+|++++||+|+.|+.|++|+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677889998876655443 348899999999999999999999999999997542 1 122233 45689
Q ss_pred EEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 148 SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.+++|+|.. ..++++++.||+|++||+.+++.+..+.+|.+.|++++|+| ++.+|++++.||.|++||++++..+..+
T Consensus 536 ~~l~~~~~~-~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYI-KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCC-CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 999998853 23599999999999999999999999999999999999996 7889999999999999998754322111
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
.
T Consensus 615 ~------------------------------------------------------------------------------- 615 (793)
T PLN00181 615 K------------------------------------------------------------------------------- 615 (793)
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
T Consensus 616 -------------------------------------------------------------------------------- 615 (793)
T PLN00181 616 -------------------------------------------------------------------------------- 615 (793)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
.+ ..+.++. +.+++..++++|+.||.|++||+.+.+ .+..+.+|...|.++.|. ++. .+++++.|+.
T Consensus 616 -------~~-~~v~~v~--~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ 683 (793)
T PLN00181 616 -------TK-ANICCVQ--FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNT 683 (793)
T ss_pred -------cC-CCeEEEE--EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCE
Confidence 00 1233333 434334448889999999999988765 456677899999999997 444 7999999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-------------
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF------------- 532 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------- 532 (706)
|++||+..... .........+.+|...+.+++++|++.+|++|+.|+.|++|+.....++..+
T Consensus 684 ikiWd~~~~~~----~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 684 LKLWDLSMSIS----GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred EEEEeCCCCcc----ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccccc
Confidence 99999875321 0112245567788999999999999999999999999999998765444322
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
..+...|.+++|+|++..|++|+.||.|+||++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=230.25 Aligned_cols=290 Identities=22% Similarity=0.394 Sum_probs=247.2
Q ss_pred EEeeccCCCeEEEEECC---CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 96 RSWKGHDGPAIGMACHP---SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+.+|.+|.+.|+..+...+... .++++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~--aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATR--AASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhh--hhhhcccchhhh
Confidence 34578999999999987 8889999999999999999999999999999999999999887655 889999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A------------------------------ 134 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA------------------------------ 134 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC------------------------------
Confidence 9999999998884 888999999999999999999999999998764221
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
T Consensus 135 -------------------------------------------------------------------------------- 134 (334)
T KOG0278|consen 135 -------------------------------------------------------------------------------- 134 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
+...+.+|.+.|..+. +...++.
T Consensus 135 -------------------------------------------------------pp~E~~ghtg~Ir~v~--wc~eD~~ 157 (334)
T KOG0278|consen 135 -------------------------------------------------------PPKEISGHTGGIRTVL--WCHEDKC 157 (334)
T ss_pred -------------------------------------------------------CchhhcCCCCcceeEE--EeccCce
Confidence 1114455666666666 4455666
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+++...|++||+||..++..++.+. ...+|+++.++++|+ +++....+.|.+||..... ......
T Consensus 158 -iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~-----------~lKs~k 222 (334)
T KOG0278|consen 158 -ILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG-----------LLKSYK 222 (334)
T ss_pred -EEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC--EEEEecCceeEEecccccc-----------ceeecc
Confidence 7777999999999999999998876 557899999999997 6777788899999987653 111223
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
....|.+..++|+...+++|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++|++||+|++|....++.
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 4456889999999999999999999999999999999986 89999999999999999999999999999999866543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=255.63 Aligned_cols=290 Identities=20% Similarity=0.307 Sum_probs=255.8
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
......+|...|.++.|.|....++++++.|+.|++|++.. +.+++.+.+|..+|..+. ++.++.. +.+++.|+.+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~--~s~~g~~-fLS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDAS--FNNCGTS-FLSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhh--ccccCCe-eeeeecceee
Confidence 44667789999999999999999999999999999999987 889999999999999998 8888888 9999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
++||+++|+++..+. ....++++.|.|++++.+++|+.|+.|+.||++.++ .......|-+.|..+.|-
T Consensus 283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------vvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------VVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----------HHHHHHhhhhheeeeEEc
Confidence 999999999998876 456789999999998899999999999999999774 444455677889999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC---ceEEEEeeccc
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG---SCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 579 (706)
++|+.+++.++|++++||+...+-++..... +.....++..+|++++++.-+.|..|.++.+... ...+.+++|..
T Consensus 352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 9999999999999999999988876655433 3445678999999999999999999999997543 23456777763
Q ss_pred --CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 005254 580 --SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWH 648 (706)
Q Consensus 580 --~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~ 648 (706)
--..+.|||||++|++|+.||.+.+||.++-+.+..++.|.+++..+.|+|... .+||++.||.|++|+
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 456789999999999999999999999999999999999999999999999754 789999999999996
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=219.03 Aligned_cols=241 Identities=20% Similarity=0.284 Sum_probs=204.5
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|.+.+..+. +.|....++++++.|.+|++||...+++........+.+ -+.|+|+|. ++++++.|..|.+.|.+.
T Consensus 62 gh~~svdql~--w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 62 GHTDSVDQLC--WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDART 137 (313)
T ss_pred CCCcchhhhe--eCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecc
Confidence 4444444444 666666779999999999999999999988876554444 578999988 899999999999999886
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
.. ..........+..++|+.++.+++.....|.|.|......+++..++.|.....|+.|+|+|+++|+
T Consensus 138 ~~-----------~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 138 YK-----------IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred cc-----------eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEee
Confidence 53 2222334455778889888888887777899999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 005254 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE 633 (706)
Q Consensus 554 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 633 (706)
|+.|..+.+||++..-|.+.+..+.-+|..+.||.||++||++++|..|-|=++++|..+..++ +.++...++|+|...
T Consensus 207 GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 207 GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRP 285 (313)
T ss_pred ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998884 578899999999999
Q ss_pred EEEEEeCC---------CcEEEEECC
Q 005254 634 MFATGGSD---------ALVNLWHDS 650 (706)
Q Consensus 634 ~l~~~~~d---------g~i~vw~~~ 650 (706)
+|+-++.| |.++++-++
T Consensus 286 LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeEEecCCCCccccccceeEEecCC
Confidence 99977654 566776554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=221.32 Aligned_cols=296 Identities=21% Similarity=0.230 Sum_probs=247.7
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.+.+|..++..+.|.. ++.+|.+++.|....+|-..+++.+-.+.+|.+.|.|++ ...+.+. +++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~D--id~~s~~-liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCD--IDWDSKH-LITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEE--ecCCcce-eeeccccceeEEEE
Confidence 4567889999999975 889999999999999999999999999999999999998 6666666 99999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe----cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG----SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.++|+++..++ ...+|..+.|+++|...+++. +..+.|.++|++..... .....+......+...++.+-|.
T Consensus 81 v~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeec
Confidence 99999999876 457899999999988444443 34578999999865321 11222455566677889999999
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEE-EEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
|-+++|++|..||.|.+||+++++.. ..-+.|...|+.+++++|..++++++.|.+-++||..+.++++++. -..+++
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 99999999999999999999998554 4456799999999999999999999999999999999999999998 567999
Q ss_pred EEEEEeCCCEEEEEeCCCC--E------------EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 583 RASFLTRGAQIVSCGADGL--V------------KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~--i------------~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.+++|-...++.|+.... | ++|++...+.+..+++|-++|++++|+|+|+..++|++||.|++..
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9999998777777654321 2 2333333456777889999999999999999999999999999987
Q ss_pred CCch
Q 005254 649 DSTA 652 (706)
Q Consensus 649 ~~~~ 652 (706)
++..
T Consensus 316 Fd~~ 319 (327)
T KOG0643|consen 316 FDSN 319 (327)
T ss_pred eccc
Confidence 6543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=241.99 Aligned_cols=284 Identities=23% Similarity=0.388 Sum_probs=248.4
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.....|.+++|+|....-+++++. -.+.+|+..+......+......+.+++ |-.+|+. +++|...|.|++||..+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~--fR~DG~L-laaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVD--FRSDGRL-LAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEE--eecCCeE-EEccCCcCcEEEecccc
Confidence 346789999999988888888776 6899999998888887888888888887 7777776 99999999999999888
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 509 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 509 (706)
...++.+.+|..++..+.|+|++...+++|+.|+.+++||+.+.. ....+.+|...|.|.+++|. +.++
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----------v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----------VQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----------EEEEecCCcceeEeeccccCCCeEE
Confidence 778888999999999999999999899999999999999998752 34567889999999999995 5689
Q ss_pred EEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEE
Q 005254 510 CTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s 587 (706)
++|+.||.|++||++.. ..+..+. |..+|..+.+-|.|..+++++.. .|+|||+.+| +.+..+..|...|+|+.+.
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEee
Confidence 99999999999999987 5555555 99999999999999999998765 5999999865 4455555599999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.++..|++++-|+.+++||+.+.+.+..+.- .++|.+++.+||++.++.|..||.+.+=+...
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999999999999999999999888854 78999999999999999999999988874433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=220.11 Aligned_cols=281 Identities=21% Similarity=0.285 Sum_probs=235.1
Q ss_pred eEeeEeCCCCcEEEEEec-------CCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 357 LDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~-------~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
.++.|+|--++.|++++. .|.+.+.++...+.+.... .-.+.+..++ +++.....+++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVA--WSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEee--ecCCCcceEEEEecCceEEEec
Confidence 467777766666666543 5789999987544444433 3455667776 6677777799999999999999
Q ss_pred CCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-C
Q 005254 428 SES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-N 505 (706)
Q Consensus 428 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 505 (706)
+.. ..++..++.|...|.++.|++..+..+++++.|++|++|+..... ...++.+|...|...+|+| .
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----------Sv~Tf~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----------SVQTFNGHNSCIYQAAFSPHI 159 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----------ceEeecCCccEEEEEecCCCC
Confidence 653 357788899999999999999888889999999999999987653 6677899999999999999 6
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 583 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~ 583 (706)
.+++++++.|+.+++||++.......+..|..++.++.|+. +...|++|+.|+.|++||+++. .++.++.+|.-.|..
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 78999999999999999987655566999999999999997 5678999999999999999875 458899999999999
Q ss_pred EEEEeCC-CEEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 005254 584 ASFLTRG-AQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNLWHD 649 (706)
Q Consensus 584 ~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~ 649 (706)
+.|||.. ..|++++.|-+++|||...+. .+.+...|..-+..+.||+- +.++++++.|+.++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999954 478999999999999998554 56677789999999999874 668999999999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=228.17 Aligned_cols=291 Identities=21% Similarity=0.358 Sum_probs=243.4
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
|...|.++.. .+..+++++.||.+++||.. ++....+.+|.+++..+++....+....|++++.|.++++|..+.+
T Consensus 104 hdDWVSsv~~---~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKG---ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhcc---cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 4455555554 37899999999999999975 5667789999999998886665555567999999999999988876
Q ss_pred eEE----EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------------cccccceeEEEee
Q 005254 432 CCV----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPMNLKAKAVVAA 492 (706)
Q Consensus 432 ~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------------~~~~~~~~~~~~~ 492 (706)
... ....+|...|.++...+++. .+++|+.|..|.+|+......... ......+...+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 533 33458999999999999987 899999999999999432211110 1112335567889
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc---
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS--- 569 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--- 569 (706)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ .....++..+|..++|++|+.|..|++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999998 66899999999999999999999888774 5678999999999999999999999999998763
Q ss_pred eEEEEeecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
..+++.+|.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+.+|.+.|.++.|. ++.++++||.|..|+++
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 4678899999999999999665 57899999999999999988 999999999999999996 56689999999999998
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
.-.
T Consensus 416 ~~~ 418 (423)
T KOG0313|consen 416 KGS 418 (423)
T ss_pred ccc
Confidence 754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=232.86 Aligned_cols=282 Identities=21% Similarity=0.351 Sum_probs=242.6
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--------eCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF--------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
....+.|..|||||+||++|+.||.|-+||..+|+..+.+ .-+...|.|+.|+.|... +++|+.||.|++
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM--lAsGsqDGkIKv 289 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM--LASGSQDGKIKV 289 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH--hhccCcCCcEEE
Confidence 4567889999999999999999999999999999865443 347889999999998776 999999999999
Q ss_pred EECCCCeeEEEee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 173 WDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 173 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-++++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----------------------------- 340 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----------------------------- 340 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-----------------------------
Confidence 9999999999986 8999999999999999999999998888776655443
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 341 -------------------------------------------------------------------------------- 340 (508)
T KOG0275|consen 341 -------------------------------------------------------------------------------- 340 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
+..+.+|...++... +.+++.
T Consensus 341 ---------------------------------------------------------LKEfrGHsSyvn~a~--ft~dG~ 361 (508)
T KOG0275|consen 341 ---------------------------------------------------------LKEFRGHSSYVNEAT--FTDDGH 361 (508)
T ss_pred ---------------------------------------------------------HHHhcCccccccceE--EcCCCC
Confidence 335566766666665 778888
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
. +++++.||+|++|+..+.+++.+++. ...+|.++-.-|.+...++++...+++.+.++... ....
T Consensus 362 ~-iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-----------vVrs 429 (508)
T KOG0275|consen 362 H-IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-----------VVRS 429 (508)
T ss_pred e-EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-----------EEee
Confidence 8 99999999999999999999988764 45678888888888888999999999999998753 2222
Q ss_pred E---eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 490 V---AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 490 ~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+ ...++...+.++||.|.++.+.++|+.++.|...+|+....+.-|...|..++-+|..+.||+-++||.+++|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 2 22345677788999999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=216.08 Aligned_cols=287 Identities=18% Similarity=0.273 Sum_probs=239.1
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~ 424 (706)
+.+......+.++.|.. ++..+++++.|..+++||..+++....+..+.-.+..+. |...... ++.++. |.+|+
T Consensus 8 k~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~--Fth~~~~-~i~sStk~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLAC--FTHHSNT-VIHSSTKEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEE--EecCCce-EEEccCCCCCceE
Confidence 44445678899999986 788888899999999999999999999998877777666 6666666 444444 88999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
..++.+.+.++.+.+|...|.+++.+|-+. .+++++.|++|++||++... +...+.. ..-..++|.|
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~----------cqg~l~~--~~~pi~AfDp 150 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK----------CQGLLNL--SGRPIAAFDP 150 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC----------CceEEec--CCCcceeECC
Confidence 999999999999999999999999999885 89999999999999998543 2222222 2234578999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc--cEEEEEe---ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL--VSVVTFR---GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
+|-++|++...+.|++||++.. .+...+. +...+.+.+.|||||++|+.+...+.+++.|.-+|..+.++..+..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999854 3444433 3467889999999999999999999999999999999999887765
Q ss_pred CE---EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 580 SV---LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 580 ~i---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.- ....|+||++++++|+.||+|.+|++++|..+..+++ +.+++.++.|+|.-.+++++ +..+.+|-....
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 33 6789999999999999999999999999999999998 78999999998887777766 456888866543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=216.58 Aligned_cols=214 Identities=19% Similarity=0.303 Sum_probs=194.0
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
+-++.+|.+|.+++.+ ...+|-..+|+.+.++.||++.|.|+..+.+.+++++|+.|.++++||+++|+++..++ ...
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~ 94 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNS 94 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCC
Confidence 7788999999999888 78999988999999999999999999999999999999999999999999999999999 568
Q ss_pred CeEEEEECCCCCEEEEecC-----CCcEEEEECC-------CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 104 PAIGMACHPSGGLLATAGA-----DRKVLVWDVD-------GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~-----d~~i~vw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
+|..+.|+++|.+++...+ .+.|.++|++ +.++...+..+...++.+-|.|-++. +++|.+||.|.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~--ii~Ghe~G~is 172 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET--IIAGHEDGSIS 172 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE--EEEecCCCcEE
Confidence 9999999999998887653 4679999997 45667788889999999999998887 99999999999
Q ss_pred EEECCCCe-eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 172 VWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 172 vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
.||+++++ .+...+.|...|+.|++++|..++++++.|.+-++||..+.+.++++....+++..+.+|..
T Consensus 173 ~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 173 IYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred EEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 99999985 45556789999999999999999999999999999999999999999888888777776654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-31 Score=224.42 Aligned_cols=312 Identities=22% Similarity=0.372 Sum_probs=244.6
Q ss_pred eEEcCCCCEEEEeeCCeEEEEE--------------ccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC
Q 005254 25 LVVSSDGSFIACACGESINIVD--------------LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS 90 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d--------------~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~ 90 (706)
..|--+|++|-+.-...|.-.. +...+.+..+. |...|.++... +++|++|+.||.+++||.
T Consensus 57 FDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~- 132 (423)
T KOG0313|consen 57 FDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL- 132 (423)
T ss_pred ceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-
Confidence 5555567776555433222222 22233334443 78889999888 889999999999999995
Q ss_pred CCeEEEEeeccCCCeEEEEECCCC---CEEEEecCCCcEEEEECCCCeE----EEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSG---GLLATAGADRKVLVWDVDGGFC----THYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
.|+....+.+|.++|.+++|.-.+ ..+++++.|.++++|.++.++. +....||...|.+++..+++.. +++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr--~~S 210 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR--FCS 210 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe--EEe
Confidence 678899999999999988875433 3699999999999999987753 3344599999999999998887 999
Q ss_pred EecCCeEEEEECCC-------------------------CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 164 GSDDATVRVWDLLA-------------------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 164 ~~~dg~i~vwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
|+.|.+|.+|+.+. +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 99999999999321 235667889999999999998 5689999999999999999
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
++..+..+.......++...+
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~----------------------------------------------------------- 310 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSP----------------------------------------------------------- 310 (423)
T ss_pred cccceeeeecCcceeEeeccc-----------------------------------------------------------
Confidence 988877765554444443333
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
...++++++.+..+
T Consensus 311 ------------------------------------------------------------------~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 311 ------------------------------------------------------------------LSKLLASGSSDRHI 324 (423)
T ss_pred ------------------------------------------------------------------ccceeeecCCCCce
Confidence 34455555555666
Q ss_pred EEEeCCCce---eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCC
Q 005254 379 QVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 379 ~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
++||..++. ....+.+|...|.++. ++|.+..+|++++.|+++++||+++.+ ++..+.+|...|.++.|+..+
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvk--wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~- 401 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVK--WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG- 401 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhhee--cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-
Confidence 666655432 3457788999999998 889999999999999999999999887 899999999999999999874
Q ss_pred eEEEEecCCCeEEEEEec
Q 005254 455 NFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~ 472 (706)
.+++|+.|.+|+++.-.
T Consensus 402 -~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 402 -LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -eEEeccCcceEEEeccc
Confidence 69999999999998654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=241.85 Aligned_cols=270 Identities=21% Similarity=0.363 Sum_probs=240.4
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCe
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAV 444 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v 444 (706)
.+.++++.. ..+++|+..++........+...++++. +.+++.. |++|..+|.|.|||..+.+.+..+.. |...|
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~--ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVK--WSPDGSH-LAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEE--ECCCCCE-EEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 445666654 7899999999997777777788999998 8888888 99999999999999999999999988 99999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|... .+.+|+.++.|..+|++..... .....+|...|..+.|++|++++|+|+.|+.+.|||..
T Consensus 264 g~laW~~~---~lssGsr~~~I~~~dvR~~~~~---------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 264 GSLAWNSS---VLSSGSRDGKILNHDVRISQHV---------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred EEEeccCc---eEEEecCCCcEEEEEEecchhh---------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 99999944 7999999999999999875421 11377899999999999999999999999999999998
Q ss_pred CccEEEEEeecCCcEEEEEEcc-CCCEEEEec--CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEE--EeCC
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSP-VDQVVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS--CGAD 599 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~d 599 (706)
..++...+..|...|.+++|+| ....||+|+ .|+.|++||..+++.+..+. -.+.|..+.|++..+-|++ |..+
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCC
Confidence 8899999999999999999999 567888875 59999999999999998887 5678999999999876665 4456
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
+.|.||+..+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus 411 n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 411 NQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 78999999999999999999999999999999999999999999999999876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=253.14 Aligned_cols=280 Identities=29% Similarity=0.490 Sum_probs=250.1
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.+..+. ...+++++.++.+.+|+..++..+.. +.+|.+.+.++. +.. +..++++|+.|.++++||..++
T Consensus 208 ~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~--~~~-~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLA--FPS-GGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEE--Eec-CCCEEEEEecCCcEEeEecCCC
Confidence 3444444443 67899999999999999999999888 999999999996 444 5555999999999999999999
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
++...+.+|.+.+.++...+. .+++|+.|.+|++|+++++. ....+.+|..+|.++..+ +.++++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~----------~l~l~~~h~~~V~~v~~~--~~~lvs 346 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA----------CLNLLRGHTGPVNCVQLD--EPLLVS 346 (537)
T ss_pred cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc----------eEEEeccccccEEEEEec--CCEEEE
Confidence 999999999999999998876 78889999999999999664 667777799999999998 789999
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
|+.|++|++||+.+++.+..+.+|...|.++.+.+. ..+++|+.|+.|++||+.+. +++.++.+|.+-+..+.+ .+
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RD 423 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--cc
Confidence 999999999999999999999999999999988765 89999999999999999999 999999999988865555 56
Q ss_pred CEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 591 AQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++|++++.|+.|++||..+++++..+.+ |...|.++++. ...+++++.||.+.+||+.++......
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 7999999999999999999999999998 77899999886 567888999999999999999887655
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=209.63 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=232.3
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
+.+.+|...+.+++|+.+|..|++|+.|+++.+|+++..+.... .++|.+.|..++|+|.. ..++++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence 45678999999999999999999999999999999988765543 46799999999999863 3469999999999999
Q ss_pred ECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccc
Q 005254 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (706)
|.+.+++........+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....+....
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e---------------------- 149 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE---------------------- 149 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce----------------------
Confidence 999999998886554444 467999999999999999999999876554433221110
Q ss_pred hhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
T Consensus 150 -------------------------------------------------------------------------------- 149 (313)
T KOG1407|consen 150 -------------------------------------------------------------------------------- 149 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEE
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 413 (706)
+..+. +..++..
T Consensus 150 -----------------------------------------------------------------~ne~~--w~~~nd~- 161 (313)
T KOG1407|consen 150 -----------------------------------------------------------------VNEIS--WNNSNDL- 161 (313)
T ss_pred -----------------------------------------------------------------eeeee--ecCCCCE-
Confidence 11111 3333333
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
++.....|+|.|.....-+++..+++|.....++.|+|+|+ ++++|+.|..+.+||++.. .+...+..+
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~EL----------iC~R~isRl 230 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDEL----------ICERCISRL 230 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc-eEeeccccceeeccChhHh----------hhheeeccc
Confidence 45555568999999999999999999999999999999998 9999999999999999753 377788889
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
.-+|..+.||.||++||++++|..|-|=++++|..+..++ +.++...++|+|...+||.++.|
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999999988 78899999999999999988765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=241.25 Aligned_cols=276 Identities=25% Similarity=0.398 Sum_probs=238.3
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~ 102 (706)
-+.+| ..+.||++.+..+++|+..+++.....+.+...|+++.|+++|.+||+|..+|.|.|||.++.+.+..+.+ |.
T Consensus 182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 46777 66799999999999999999997777776689999999999999999999999999999999999999999 99
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 181 (706)
..|-+++|. +..+.+|+.++.|..+|+...+.... +.+|...|..+.|++|+.. +++|+.|+.+.|||.....+.
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--eccCCCccceEeccCCCcccc
Confidence 999999999 67799999999999999988766555 8889999999999999887 999999999999999888999
Q ss_pred EEeecccceEEEEEEec-CCCEEEEEe--CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 182 ATLDKHFSRVTSMAITS-DGSTLISAG--RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 182 ~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..+..|.+.|.+++|+| ...+|++|+ .|+.|++||..++..+..+.....
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ--------------------------- 389 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ--------------------------- 389 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc---------------------------
Confidence 99999999999999999 455788875 588999999987776655544333
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 390 -------------------------------------------------------------------------------- 389 (484)
T KOG0305|consen 390 -------------------------------------------------------------------------------- 389 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEE-EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
|..+.|++...+++.+ |..++.|.+|+..+.+....+.+|...|..++ .+|++.. +++|
T Consensus 390 -----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la--~SPdg~~-i~t~ 449 (484)
T KOG0305|consen 390 -----------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA--LSPDGET-IVTG 449 (484)
T ss_pred -----------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE--ECCCCCE-EEEe
Confidence 4444444434333333 45567899999999999999999999999998 8899888 9999
Q ss_pred eCCCcEEEEeCCCc
Q 005254 418 SKDNSVRLWDSESR 431 (706)
Q Consensus 418 ~~dg~i~i~d~~~~ 431 (706)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=250.53 Aligned_cols=260 Identities=23% Similarity=0.373 Sum_probs=213.3
Q ss_pred EEEeec-CCCccEEEEEEccCCCEEEEEeccCeEEEEECCC---------------------------------------
Q 005254 52 IKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLST--------------------------------------- 91 (706)
Q Consensus 52 ~~~~l~-~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~--------------------------------------- 91 (706)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 445666 8999999999999999999999999999998753
Q ss_pred ---------------------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 92 ---------------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 92 ---------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
.++++.+.||.+.|..+.||.++ +|++++.|.+|++|++...++++.|. |..-|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 12344567999999999999875 89999999999999999999999998 99999999
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+|+|-.+ +++++|+-||.|+||++...+.+.-.. -..-|++++|+|||+..++|+.+|..++|+....+.........
T Consensus 416 aFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCC-CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9999744 579999999999999998777665444 34789999999999999999999999999988765443322100
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
T Consensus 494 -------------------------------------------------------------------------------- 493 (712)
T KOG0283|consen 494 -------------------------------------------------------------------------------- 493 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
...-......|+++.|.|.+...+++.+.|..|++||......+.
T Consensus 494 -----------------------------------~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 494 -----------------------------------HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred -----------------------------------ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 000011123788999998888899999999999999999888888
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
.+++....-..+...+..++++ ++++++|..|++|+....
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKH-IVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hhcccccCCcceeeeEccCCCE-EEEeecCceEEEEeCCCC
Confidence 8887665544444448888888 999999999999998643
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=226.77 Aligned_cols=300 Identities=28% Similarity=0.400 Sum_probs=232.5
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE----E-------------e-eccCCCeEEEEECCCC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR----S-------------W-KGHDGPAIGMACHPSG 114 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~----~-------------~-~~~~~~v~~~~~s~~~ 114 (706)
...+..|.-+|+|++++||.++..+++.+++|.=|++.+++... . - +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667899999999999999999999999999999998876331 1 0 2678899999999999
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
+|||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-..... +++++.|+.|++|+++....+.++.+|++.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~--lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE--LYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccc--eeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999999999999999999876666 9999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
....-++.+.+|+.|+++++|++.....+.-......+.++++..+. +|++|+.+|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~------------------------HfvsGSdnG 348 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE------------------------HFVSGSDNG 348 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc------------------------ceeeccCCc
Confidence 99988888888889999999999766555555555566666666555 677777778
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
.|.+|++.....+.......
T Consensus 349 ~IaLWs~~KKkplf~~~~AH------------------------------------------------------------ 368 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAH------------------------------------------------------------ 368 (479)
T ss_pred eEEEeeecccCceeEeeccc------------------------------------------------------------
Confidence 77777766542211100000
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--- 431 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--- 431 (706)
|.+-.. ....+...|++++ ..+..+ ++++|+.+|.|++|-+..+
T Consensus 369 ---------------------gv~~~~---------~~~~~~~Witsla--~i~~sd-L~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 369 ---------------------GVIPEL---------DPVNGNFWITSLA--VIPGSD-LLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred ---------------------cccCCc---------cccccccceeeeE--ecccCc-eEEecCCCCceEEEEecCCccc
Confidence 000000 0001123566775 445444 4999999999999998877
Q ss_pred -eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 432 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 432 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
.++..+. -.+.|++++|+++|+.+++..+....+--|-..
T Consensus 416 i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 416 INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred cceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 3334444 678999999999999677776777666666543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-30 Score=246.52 Aligned_cols=284 Identities=29% Similarity=0.513 Sum_probs=245.9
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE-eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS-WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
+...+.+..|. ..++++++.+++|++||..++..+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56788999999 56789999999999999999999888 9999999999999988889999999999999999999999
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.+.+|...|.++...+. ++++|+.|.+|++|+++++..+..+.+|.++|.++... +.++++|+.|+.|++|++
T Consensus 285 ~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 999999999999998653 38889999999999999999999999999999999997 779999999999999987
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+++
T Consensus 359 ~~~~---------------------------------------------------------------------------- 362 (537)
T KOG0274|consen 359 RTGK---------------------------------------------------------------------------- 362 (537)
T ss_pred hhce----------------------------------------------------------------------------
Confidence 5433
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
T Consensus 363 -------------------------------------------------------------------------------- 362 (537)
T KOG0274|consen 363 -------------------------------------------------------------------------------- 362 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
++..+.+|...|.++. +.+. .. +++|+.|++|++||+.+. +++..+..|...+..+.+... +
T Consensus 363 ----------cl~sl~gH~~~V~sl~--~~~~-~~-~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~---~ 425 (537)
T KOG0274|consen 363 ----------CLKSLSGHTGRVYSLI--VDSE-NR-LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN---F 425 (537)
T ss_pred ----------eeeeecCCcceEEEEE--ecCc-ce-EEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc---e
Confidence 3345667778888774 4333 44 999999999999999999 999999999999977777655 8
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
|++++.|++|++||...+. ......+ |...|..+++. ...+++++.||.+.+||+++++....+-.+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~----------~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGE----------CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eEeccccccEEEeecccCc----------eeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 9999999999999998764 5555555 56778888876 567888999999999999999888876433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-29 Score=207.51 Aligned_cols=292 Identities=23% Similarity=0.335 Sum_probs=235.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVW 129 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw 129 (706)
+.+.+......|+++.|+++|.+|++++.|..|+|||..+++.++++..++..+..+.|......++.++. |.+|+.-
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 33455556788999999999999999999999999999999999999999999999999887777777765 8899999
Q ss_pred ECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
++.+.+.+..|.||...|..++.+|-++. +++++.|++|++||++..++...+... .-...+|.|+|-.++++...
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~--FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDT--FLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCe--EEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCC
Confidence 99999999999999999999999998876 999999999999999988887766443 33457899999988888887
Q ss_pred CEEEEEeCCCCcc--eeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 210 KVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 210 g~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
..|++||++.... ...+..
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i----------------------------------------------------------- 182 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSI----------------------------------------------------------- 182 (311)
T ss_pred CeEEEEEecccCCCCceeEcc-----------------------------------------------------------
Confidence 7999999875321 110000
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
......+...+.|+| +++
T Consensus 183 -------------------------------------------------------------~~~~~~ew~~l~FS~-dGK 200 (311)
T KOG1446|consen 183 -------------------------------------------------------------TDNDEAEWTDLEFSP-DGK 200 (311)
T ss_pred -------------------------------------------------------------CCCCccceeeeEEcC-CCC
Confidence 001233455666665 777
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceE-EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVG 445 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~ 445 (706)
.++.++..+.+++.|.-+|.....+.++...- ..+..++.|+++. +++|+.||+|.+|+++++..+..+.+ +.+++.
T Consensus 201 ~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~ 279 (311)
T KOG1446|consen 201 SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVS 279 (311)
T ss_pred EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence 88888888999999999988887777665432 2245558899988 99999999999999999999999888 689999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
++.|+|.. ....+.+..+.+|-..
T Consensus 280 ~~~fnP~~---~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 280 CVRFNPRY---AMFVSASSNLVFWLPD 303 (311)
T ss_pred ccccCCce---eeeeecCceEEEEecc
Confidence 99999983 4444555667888654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=227.51 Aligned_cols=286 Identities=19% Similarity=0.337 Sum_probs=250.6
Q ss_pred CCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEE
Q 005254 301 DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380 (706)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~ 380 (706)
......+.+++++|...+=++.+..-.+.+|+..... ..+.+..+...+.++.|-. ++.++++|...|.|++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------VRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKV 94 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------hhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEE
Confidence 4456778999999999999999999999999877543 2234556677888888876 8999999999999999
Q ss_pred EeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe
Q 005254 381 YDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460 (706)
Q Consensus 381 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 460 (706)
||..+...+..+..|..++.... |.|.++..+++|++|+.+++||+.+......+.+|...|.+.+++|....++++|
T Consensus 95 fD~k~r~iLR~~~ah~apv~~~~--f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAHQAPVHVTK--FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred eccccHHHHHHHhhccCceeEEE--ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 99888778889999999999998 8899999999999999999999999998778999999999999999988899999
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcE
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGI 539 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v 539 (706)
+.||.|++||.+... .......|+.+|..+.+-|.|..+++++. ..|++||+.+|. .+..+..|...|
T Consensus 173 sYDg~vrl~DtR~~~----------~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLT----------SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred CCCceEEEEEeccCC----------ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence 999999999998653 34445679999999999999999999874 579999999664 444555599999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|+++..++..|++++-|+.+++||+.+.+.+..+. -.++|.+++.+|+++.++.|..||.+.+-+..
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999999999999999999887 67899999999999999999999988877443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=210.19 Aligned_cols=268 Identities=22% Similarity=0.383 Sum_probs=227.4
Q ss_pred eeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEE
Q 005254 323 TADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLC 401 (706)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~ 401 (706)
..+|++.+.+....+. ............+.+++|++..++.+++++.||.+++||+.. ..++..++.|...|.+
T Consensus 35 ~G~G~L~ile~~~~~g-----i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKG-----IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS 109 (311)
T ss_pred ccCceEEEEecCCCCC-----eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE
Confidence 3467777777652211 111222345678899999999999999999999999999653 4567788999999999
Q ss_pred eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++ +.+..+..+++++.|++|++|+...++.+.++.+|...|...+|+|..++++++++.|+.+++||++...
T Consensus 110 vd--wn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------ 181 (311)
T KOG0277|consen 110 VD--WNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------ 181 (311)
T ss_pred ec--cccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------
Confidence 99 7777777789999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCC
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDK 558 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg 558 (706)
....+..|...|.++.|+. +.+.|++|+.|+.|+.||++.. .++..+.+|.-.|..+.|||.. ..|++++.|-
T Consensus 182 ----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 182 ----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred ----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 3444788889999999998 6678999999999999999875 5678889999999999999964 6789999999
Q ss_pred cEEEEEcCCC-ceEEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEEC
Q 005254 559 TIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 559 ~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~ 607 (706)
+++|||...+ .++.+...|..-+..+.||+ +..++|+++-|+.++||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999998755 45666777888899999987 5679999999999999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=217.04 Aligned_cols=201 Identities=24% Similarity=0.484 Sum_probs=174.7
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccC------------------CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSN------------------ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~------------------~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
+-+|||||.++|+|+.+ .|.|+|++. ...+++|-.|..+|+++.|+|....|++++.|++|
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tv 196 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTV 196 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeE
Confidence 78899999999999998 899999861 12567888899999999999999999999999999
Q ss_pred EEEECCCCeEEEEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---eCCCCcEEEEEEcCCCCce
Q 005254 85 RVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 85 ~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~ 159 (706)
+++|+......+.++. ...+|.++.|+|.|.+|++|.+-.++++||+.+-++.... .+|.+.|+++.+++.++.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~l- 275 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSL- 275 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccE-
Confidence 9999976544433332 4578999999999999999999999999999998876543 369999999999998765
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEee-ccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLD-KHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.++++.||.|++||--+++++.++. .|. ..|.+..|+.+|+++++.+.|..+++|.+.+++.+...
T Consensus 276 -YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 276 -YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred -EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999999999999999999998874 454 47999999999999999999999999999988877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-28 Score=238.61 Aligned_cols=218 Identities=22% Similarity=0.322 Sum_probs=174.3
Q ss_pred CCCcccccceeeceeeeeeeec-cceEEcCCCCEEEEeeCC-eEEEEEccCCeEE-------------EeecCCCccEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGG-GPLVVSSDGSFIACACGE-SINIVDLSNASIK-------------STIEGGSDTITA 65 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~-------------~~l~~~~~~i~~ 65 (706)
|.....+-+|.....-...|.. .....++|+..++.+... ....|+...+..+ ..+.+|.+.|++
T Consensus 1 ~~~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~ 80 (493)
T PTZ00421 1 MSVSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIID 80 (493)
T ss_pred CCcccccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEE
Confidence 5556666666666555555543 345566775555554444 4455654333221 247789999999
Q ss_pred EEEcc-CCCEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCeE
Q 005254 66 LALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 66 l~~s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~~ 136 (706)
++|+| ++++||+|+.|++|++||+.++ +++..+.+|...|.+++|+|++ .+|++++.|++|++||+++++.
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~ 160 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA 160 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE
Confidence 99999 8899999999999999999765 3567889999999999999985 6999999999999999999999
Q ss_pred EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce-EEEEEEecCCCEEEEEe----CCCE
Q 005254 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGSTLISAG----RDKV 211 (706)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~ 211 (706)
+..+.+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+.+|.+. ...+.|.+++..+++++ .|+.
T Consensus 161 ~~~l~~h~~~V~sla~spdG~l--Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 161 VEVIKCHSDQITSLEWNLDGSL--LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred EEEEcCCCCceEEEEEECCCCE--EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 9999999999999999998876 999999999999999999999999888764 45677888888887765 4788
Q ss_pred EEEEeCCCC
Q 005254 212 VNLWDLRDY 220 (706)
Q Consensus 212 i~~w~~~~~ 220 (706)
|++||+++.
T Consensus 239 VklWDlr~~ 247 (493)
T PTZ00421 239 IMLWDTRKM 247 (493)
T ss_pred EEEEeCCCC
Confidence 999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-30 Score=221.62 Aligned_cols=280 Identities=20% Similarity=0.284 Sum_probs=244.5
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
.+..+...+. ...+.+++.|..+.++|..+++.+..++||...+..+. +.++... +++++.|..|++|........
T Consensus 221 gi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~--~~~~~~~-v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVK--FHKDLDT-VITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEE--eccchhh-eeecCCcceEEeeccccccCc
Confidence 3445555554 67899999999999999999999999999999999997 7776666 999999999999999988888
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEe
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.....|..+|+.+..+|.|. ++++++.|++..+.|++.+. ...... ...-.+++.+|+|||.++.+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred cccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCc----------EEEEEeeccccceeEEeeEcCCceEEecc
Confidence 88899999999999999998 99999999999999998763 222222 233458999999999999999
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-cCEEEEEEEeCCC
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGA 591 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 591 (706)
..||.++|||+.++.....|.+|.++|..++|+.+|-+|+++++|+.|++||++..+..+++.-.. .++.++.|.+.|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 999999999999999999999999999999999999999999999999999999888777776432 3699999999999
Q ss_pred EEEEEeCCCCEEEEECC--CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 592 QIVSCGADGLVKLWTVR--TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
+|+.++.|=.|++++-. +..++..+..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999888677776633 56678888899999999999999999999999999999865
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=228.56 Aligned_cols=285 Identities=24% Similarity=0.374 Sum_probs=237.1
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
+....+..|.+.+..+.|-++...|++|+.|..|++|++..++ .+..+.+..+.|+.+.|.+++.. +++.+.|+.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~--~iAas~d~~~ 243 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKH--VIAASNDKNL 243 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCce--EEeecCCCce
Confidence 3445677899999999999999999999999999999998776 67778888999999999998777 9999999999
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
++|++.+.+...++.+|.+.|+++.|......+++++.|.+|+.||+....+.+++...+...
T Consensus 244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn----------------- 306 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCN----------------- 306 (459)
T ss_pred eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccccc-----------------
Confidence 999999999999999999999999998877779999999999999998755544321111000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 307 -------------------------------------------------------------------------------- 306 (459)
T KOG0288|consen 307 -------------------------------------------------------------------------------- 306 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
.|. ..
T Consensus 307 -------------------------------------------------------------------DI~-----~~--- 311 (459)
T KOG0288|consen 307 -------------------------------------------------------------------DIV-----CS--- 311 (459)
T ss_pred -------------------------------------------------------------------ceE-----ec---
Confidence 000 10
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
...+++|..|++|++||..+.........+. .|+++..++++. -+++++.|.++.+.|++... ....+
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~e----------I~~~~ 379 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKE----------IRQTF 379 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeeccccc----------EEEEe
Confidence 1127888899999999999999888887665 999999999987 56677999999999998753 22222
Q ss_pred ee----cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC--cEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 491 AA----HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 491 ~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
.+ .....+.+.|||++.|+++|+.||.|+||++.+++....+..... .|++++|+|.|..|++++.++.+.+|
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 11 234488999999999999999999999999999999888876444 59999999999999999999999999
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=227.98 Aligned_cols=282 Identities=23% Similarity=0.328 Sum_probs=241.0
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
.+..|.+.+..+.|.+ +...|++++.|..|.+|+....+ ....+.+..++++.++ +.++++. +++++.|+.+++
T Consensus 170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d--~d~~~~~-~iAas~d~~~r~ 245 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSID--FDSDNKH-VIAASNDKNLRL 245 (459)
T ss_pred hhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceee--ecCCCce-EEeecCCCceee
Confidence 4455777888888876 66789999999999999998776 5667888899999999 9999998 888899999999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|+....+...++.+|...|+++.|..... .+++|+.|.+|++||+.... +... .-....+..+..+
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~----------C~kt-~l~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY----------CSKT-VLPGSQCNDIVCS-- 311 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh----------eecc-ccccccccceEec--
Confidence 99999999999999999999999988755 49999999999999998642 1111 1122334445554
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec----ccCE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSV 581 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i 581 (706)
...+++|-.|+.|++||.++..+......+. .|+++..++++..|.+++.|.++.+.|+++.+....+... ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5568888899999999999999999988765 9999999999999999999999999999998888777642 2358
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.+.|||++.|+++|+.||.|+||++.++++...+..... .|+++.|+|.|..|++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 8999999999999999999999999999999888875443 599999999999999999999999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=245.19 Aligned_cols=218 Identities=19% Similarity=0.198 Sum_probs=185.7
Q ss_pred CCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 429 ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
+..+.+..+.+|...|..++|+|++. ++++++.|++|.+|+..+.. ....+.+|...|..+.|.|-|+|
T Consensus 117 E~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~----------~~~vl~~H~s~VKGvs~DP~Gky 185 (942)
T KOG0973|consen 117 ESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE----------LLKVLRGHQSLVKGVSWDPIGKY 185 (942)
T ss_pred ceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce----------eeeeeecccccccceEECCccCe
Confidence 34456667788999999999999987 99999999999999987653 78889999999999999999999
Q ss_pred EEEeeCCCcEEEEeCCCccEEEEEeecC------CcEEEEEEccCCCEEEEecC----CCcEEEEEcCCCceEEEEeecc
Q 005254 509 VCTGSQDRTACVWRLPDLVSVVTFRGHK------RGIWSVEFSPVDQVVITASG----DKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
+|+-+.|++|++|++.+......+..+. .-...+.|||||++|++... -.++.|.+-.+.+.-..+-||.
T Consensus 186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~ 265 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHS 265 (942)
T ss_pred eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCC
Confidence 9999999999999988776666665543 24678999999999998643 3468999988888889999999
Q ss_pred cCEEEEEEEeC-----CC------------EEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeC
Q 005254 579 SSVLRASFLTR-----GA------------QIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 579 ~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.++.++.|+|. .+ .+|+|+.|++|.||.....+++..+. -....|..++|+|||..|+.++.
T Consensus 266 ~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 266 APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec
Confidence 99999999872 11 57899999999999998888876654 45678999999999999999999
Q ss_pred CCcEEEEECCchhHHHH
Q 005254 641 DALVNLWHDSTAAEREE 657 (706)
Q Consensus 641 dg~i~vw~~~~~~~~~~ 657 (706)
||+|.+..++..+.-..
T Consensus 346 DGtV~~i~Fee~ElG~~ 362 (942)
T KOG0973|consen 346 DGTVALIHFEEKELGVA 362 (942)
T ss_pred CCeEEEEEcchHHhCcc
Confidence 99999999987765443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=245.10 Aligned_cols=293 Identities=20% Similarity=0.298 Sum_probs=228.6
Q ss_pred CCccEEEEEEccCCCEEEEEe--ccCeEEEEECCC------------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 59 GSDTITALALSPDDKLLFSSG--HSREIRVWDLST------------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
+...|.++..+|||..+|+|+ .|+.++||+.+. .+.+.....|.+.|+|+.|+|||+|||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 799999998752 345666778999999999999999999999999
Q ss_pred cEEEEECCC------------------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 125 KVLVWDVDG------------------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 125 ~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
.|.||.... -+....+.+|...|..++|+|++.. +++++.|++|.+||..+.+.+..+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~--lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL--LVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE--EEEecccceEEEEccccceeeeeeec
Confidence 999999872 1367788999999999999998765 99999999999999999999999999
Q ss_pred ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 187 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
|.+.|..+.|.|-|+++++-+.|++|++|++.+....+.+..+..
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~----------------------------------- 214 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE----------------------------------- 214 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-----------------------------------
Confidence 999999999999999999999999999999766444433321110
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
.......+..+.
T Consensus 215 ---------------------------------~~~~~T~f~RlS----------------------------------- 226 (942)
T KOG0973|consen 215 ---------------------------------ESPLTTFFLRLS----------------------------------- 226 (942)
T ss_pred ---------------------------------hCCCcceeeecc-----------------------------------
Confidence 000000011111
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe----eCCCc
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG----SKDNS 422 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~----~~dg~ 422 (706)
++|++.+ |++. +.-.+
T Consensus 227 -----------------------------------------------------------WSPDG~~-las~nA~n~~~~~ 246 (942)
T KOG0973|consen 227 -----------------------------------------------------------WSPDGHH-LASPNAVNGGKST 246 (942)
T ss_pred -----------------------------------------------------------cCCCcCe-ecchhhccCCcce
Confidence 4455544 3322 11235
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecC--------CC--------eEEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKK--------LQ--------NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------~~--------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
+.|.+-.+.+.-..+-+|..++.+++|+|. |. ..+++|+.|++|.||......+ .
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP---------l 317 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP---------L 317 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc---------h
Confidence 667777777777778899999999999872 11 2789999999999999754321 2
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
.....-....|..++|+|||..|.+++.||+|.++.++.
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 222333567899999999999999999999999998753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=240.04 Aligned_cols=207 Identities=26% Similarity=0.413 Sum_probs=173.3
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
++...+.+|.+.|..+. + ..++. |++++.|.+|++|++....++..+. |...|+|++|+|...+++++|+-||.+
T Consensus 360 kP~~ef~GHt~DILDlS--W-SKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLS--W-SKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecc--c-ccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 45667889999999986 3 44444 9999999999999999999999886 999999999999888899999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--c------CCc
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--H------KRG 538 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~------~~~ 538 (706)
+||++... ..........-|++++|+|||++.++|+.+|.+++|+....+......- | ...
T Consensus 435 RiWsI~d~-----------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 435 RLWSISDK-----------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred EEeecCcC-----------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCce
Confidence 99999865 3333344457799999999999999999999999999988776655432 1 237
Q ss_pred EEEEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeeccc--CEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 539 IWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 539 v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|+.+.|.|.. ..+++.+.|..|||||.++..++..|+++.. .-....|+.||++|+++++|..|++|+...
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9999999844 3577778999999999988888888887543 345679999999999999999999999854
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-28 Score=219.90 Aligned_cols=233 Identities=17% Similarity=0.254 Sum_probs=173.3
Q ss_pred eeCCCcEEEEeCCCceEEE--EE--eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 417 GSKDNSVRLWDSESRCCVG--VG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
.+..|.|.||+++..-.+- .+ -.....|+.+.|.|-....|++++.||.|++|.+..+.... ........+..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE---NEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc---ccCCcceeeec
Confidence 4667899999987532221 11 12456789999999777789999999999999998765322 12235567788
Q ss_pred cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc-e
Q 005254 493 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS-C 570 (706)
Q Consensus 493 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~ 570 (706)
|...|+++.|+| -.+.|++++.|-+|++||+.+++....+.+|.+.|..++|||+|+.+|+.+.||+|++|+.++++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 999999999999 45789999999999999999999999999999999999999999999999999999999987764 3
Q ss_pred EEEEeecc-cCEEEEEEEeCCCEEEEEeCCC----CEEEEECCCC--eEEEEec--cCCCcEEEEEEcCCCC-EEEEEeC
Q 005254 571 LKTFEGHT-SSVLRASFLTRGAQIVSCGADG----LVKLWTVRTG--ECIATYD--KHEDKIWALAVGKKTE-MFATGGS 640 (706)
Q Consensus 571 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~ 640 (706)
+.+-.+.. ..-..+.|..||+++++.+.|. .|.+||.++- .++.+.. .... +.--.+.+|.. ++++|-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCC
Confidence 44433322 2345678999999999888764 6788887643 2332221 1111 00112234444 5678888
Q ss_pred CCcEEEEECCchh
Q 005254 641 DALVNLWHDSTAA 653 (706)
Q Consensus 641 dg~i~vw~~~~~~ 653 (706)
|..|..|.+..+.
T Consensus 835 D~~v~~yEv~~es 847 (1012)
T KOG1445|consen 835 DRFVNMYEVIYES 847 (1012)
T ss_pred CceEEEEEecCCC
Confidence 9999999987654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=210.07 Aligned_cols=296 Identities=22% Similarity=0.373 Sum_probs=245.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
+++.+.||...|..++.......+.+++.|.+.+||.+++|+++.++.+|.+.|++++|++.+.++++++.|++-.||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 45778899999999999988889999999999999999999999999999999999999999999999999999999972
Q ss_pred ------CC-----C-----------------------------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 132 ------DG-----G-----------------------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 132 ------~~-----~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.. + .++..+.+|.+.|.+..|...++. +++++.|.+-.
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q--~vTaSWDRTAn 297 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ--MVTASWDRTAN 297 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce--eeeeeccccce
Confidence 11 0 245678899999999999998888 99999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++..-
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI------------------------------ 347 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI------------------------------ 347 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc------------------------------
Confidence 99999999999999999999999999999999999999999999986210
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 348 -------------------------------------------------------------------------------- 347 (481)
T KOG0300|consen 348 -------------------------------------------------------------------------------- 347 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
..+..+++|...+++.. |.. +.
T Consensus 348 -------------------------------------------------------~sV~VFQGHtdtVTS~v--F~~-dd 369 (481)
T KOG0300|consen 348 -------------------------------------------------------QSVAVFQGHTDTVTSVV--FNT-DD 369 (481)
T ss_pred -------------------------------------------------------ceeeeecccccceeEEE--Eec-CC
Confidence 01125677888888775 444 34
Q ss_pred EEEEEeeCCCcEEEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
. +++|++|.+|++||+.+.+ ++..+. ..+++..++++..++ +++.--.+..|++||++..... ..+....
T Consensus 370 ~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rla------RlPrtsR 440 (481)
T KOG0300|consen 370 R-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLA------RLPRTSR 440 (481)
T ss_pred c-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCccc------cCCcccc
Confidence 4 8999999999999998764 344433 567888899988766 7888888999999999875321 1133345
Q ss_pred eecCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCc
Q 005254 491 AAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~ 526 (706)
.+|...|+|.+|..+- .-|++++.|..+.-|.+...
T Consensus 441 qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 441 QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 6788899999998643 35678888999999988654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=205.92 Aligned_cols=246 Identities=22% Similarity=0.347 Sum_probs=204.4
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC--EEEEecCCCcEEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWD 130 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~ 130 (706)
+..+..|..+|+++|.+ +.|+|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|++||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 45667899999999998 99999999999999999999999999999999999999999775 899999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
...-+++..+++|.+.|+.++.+|.++. .++.+.|+.++.||+-.|+.-..++-. ..-+.+.|+|.|.+++.++.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KL--ALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKL--ALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCce--EEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEeccE
Confidence 9999999999999999999999998775 788899999999999988866555322 2334489999999888887655
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
|-+|.+.+......+..+.
T Consensus 191 -i~i~q~d~A~v~~~i~~~~------------------------------------------------------------ 209 (362)
T KOG0294|consen 191 -IDIYQLDNASVFREIENPK------------------------------------------------------------ 209 (362)
T ss_pred -EEEEecccHhHhhhhhccc------------------------------------------------------------
Confidence 8888887655443332211
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
.+.++.| .++..++
T Consensus 210 ----------------------------------------------------------------r~l~~~~--l~~~~L~ 223 (362)
T KOG0294|consen 210 ----------------------------------------------------------------RILCATF--LDGSELL 223 (362)
T ss_pred ----------------------------------------------------------------cceeeee--cCCceEE
Confidence 1122222 3677888
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
+|..++.+.+||..+..+...+.+|...|..+.....+++ .++++++.||.|++||++..
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 8888999999999998999999999999999875445555 45999999999999998865
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=213.25 Aligned_cols=251 Identities=21% Similarity=0.312 Sum_probs=207.2
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE--eCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
++.+..|..+|.++. |.|.... |++|+.|++|++||+......+.+ -....+|.++.|+|.|. +|+.|.....+
T Consensus 165 IRTlYDH~devn~l~--FHPre~I-LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~ 240 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLD--FHPRETI-LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTL 240 (430)
T ss_pred EeehhhccCccccee--ecchhhe-EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCce
Confidence 446778999999998 8887776 999999999999999865433222 23567899999999998 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cC-CcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HK-RGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~-~~v~~~~~ 544 (706)
++||+++..... .......|...|+++.+++.|++.++++.||.|++||--+++++.++.. |. ..|.+..|
T Consensus 241 rlYdv~T~Qcfv-------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 241 RLYDVNTYQCFV-------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred eEEeccceeEee-------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE
Confidence 999998653111 1123456888999999999999999999999999999988888887754 54 46899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEec-
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYD- 617 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~- 617 (706)
..+++++++.+.|..+++|.+.+++++.++.+.. .--+...|.....|++.-.+ .+.+.-||.+++..+..+.
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc
Confidence 9999999999999999999999999999987642 12345577777778776554 3679999999998776665
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|++.+..+.-||.+.-++|++.|-.+++|--.
T Consensus 394 gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 394 GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 999999999999999999999999999999643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=223.80 Aligned_cols=209 Identities=15% Similarity=0.230 Sum_probs=169.6
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
++|...+++.+|+|..+..+++++.||++++|++...+.... ........+..-+++.++|++||+++|+|+.||.
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q----Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS 340 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ----VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS 340 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee----EEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence 579999999999999999999999999999999987642111 0011112234457899999999999999999999
Q ss_pred EEEEeCCCcc---EEEEEeecCC--cEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeec--ccCEEEEEEEeC
Q 005254 518 ACVWRLPDLV---SVVTFRGHKR--GIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGH--TSSVLRASFLTR 589 (706)
Q Consensus 518 i~i~d~~~~~---~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~--~~~i~~~~~s~~ 589 (706)
|.+|+..... ....-..|.. .|+++.||+||++|++-+.|+++++||++.. +++....+- ..+-+.++|||+
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC
Confidence 9999975442 2333445776 8999999999999999999999999999865 445554442 335678999999
Q ss_pred CCEEEEEeC------CCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 590 GAQIVSCGA------DGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 590 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++|++|+. .|.+.+||..+-+.+..+.-....|..+.|+|.-+.|+.++.||.+++|=-.
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 999999864 4689999999999999998878889999999998889999999999987433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=221.41 Aligned_cols=293 Identities=22% Similarity=0.405 Sum_probs=232.0
Q ss_pred EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEe
Q 005254 137 THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWD 216 (706)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~ 216 (706)
+..+.+|...|.+++=+|.. ...+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~-ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNK-LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcch-hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 34567899999999999973 34599999999999999999999999999999999999987 5688888999999998
Q ss_pred CCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccc
Q 005254 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTI 296 (706)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 296 (706)
+... ...++.
T Consensus 136 ~~~~-p~~til--------------------------------------------------------------------- 145 (433)
T KOG0268|consen 136 IDGP-PLHTIL--------------------------------------------------------------------- 145 (433)
T ss_pred ccCC-cceeee---------------------------------------------------------------------
Confidence 6531 000000
Q ss_pred ccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCC
Q 005254 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE 376 (706)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 376 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (433)
T KOG0268|consen 146 -------------------------------------------------------------------------------- 145 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
....+..++ ....+.. +++++. .|.|||.....++..+.-....+.++.|+|....+
T Consensus 146 ------------------g~s~~~gId--h~~~~~~-FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 146 ------------------GKSVYLGID--HHRKNSV-FATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred ------------------ccccccccc--ccccccc-ccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchh
Confidence 000111111 1122222 677765 48999999999999999889999999999998889
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-cEEEEEeec
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-VSVVTFRGH 535 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~ 535 (706)
|++++.|+.|.+||++...+.. ... ....-+.++|+|++-.+++|++|..++.||++.. .++....+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~---------KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLK---------KVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred eeeeccCCceEEEecccCCccc---------eee--eeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 9999999999999998764211 111 1233478999998889999999999999999875 567788899
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+.|.+++|||.|+-+++|+.|.+|+||....+.....+.. ....|.++.||.|.+|+++|+.|+.|++|.....+.+.
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 99999999999999999999999999999987765444321 23478999999999999999999999999987666554
Q ss_pred Ee
Q 005254 615 TY 616 (706)
Q Consensus 615 ~~ 616 (706)
.+
T Consensus 352 v~ 353 (433)
T KOG0268|consen 352 VI 353 (433)
T ss_pred CC
Confidence 43
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=223.67 Aligned_cols=303 Identities=20% Similarity=0.281 Sum_probs=233.3
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe----eEEEe-ecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK----CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
..+++|+..|.++++-|.|.+ +++|+.|.+|++||++... ..+.+ +.....|.++.|++.|..|++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR--~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGAR--FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCce--eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 456788999999999999988 9999999999999997542 22222 2344589999999999999988888888
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
+++|-+..+.....
T Consensus 239 kl~DRdG~~~~e~~------------------------------------------------------------------ 252 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFS------------------------------------------------------------------ 252 (641)
T ss_pred eEEccCCceeeeee------------------------------------------------------------------
Confidence 88885432211110
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
T Consensus 253 -------------------------------------------------------------------------------- 252 (641)
T KOG0772|consen 253 -------------------------------------------------------------------------------- 252 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEe-----CCCcCeEE
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT-----GHMGAVGA 446 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-----~~~~~v~~ 446 (706)
.|.-+|-|+. ..++|...++|-. +.|..+..+++++.||++|+||+.+.+ .+..+. +..-+++.
T Consensus 253 --KGDQYI~Dm~------nTKGHia~lt~g~--whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 253 --KGDQYIRDMY------NTKGHIAELTCGC--WHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred --ccchhhhhhh------ccCCceeeeeccc--cccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 0222222222 3356777777776 888888889999999999999987643 222222 34457889
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
++|+++++ ++++|..||.|.+|+....... .......+|.. .|+|+.||+||++|++-+.|+++++||++
T Consensus 323 C~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~-------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 323 CAWNRDGK-LIAAGCLDGSIQIWDKGSRTVR-------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred eecCCCcc-hhhhcccCCceeeeecCCcccc-------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 99999998 7999999999999998654321 13445566766 89999999999999999999999999998
Q ss_pred CccE-EEEEee--cCCcEEEEEEccCCCEEEEecC------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEE
Q 005254 525 DLVS-VVTFRG--HKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS 595 (706)
Q Consensus 525 ~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 595 (706)
..+. +....+ ...+-+.++|||+.++|++|.. .|.+.+||..+.+.+..+.-....|..+.|+|.-+.|+.
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence 7643 333333 2345678999999999999864 578999999999999998888889999999999999999
Q ss_pred EeCCCCEEEEE
Q 005254 596 CGADGLVKLWT 606 (706)
Q Consensus 596 ~~~dg~i~iwd 606 (706)
|+.||.++||=
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 99999999873
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=214.97 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=186.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
++...|....+.+|+.+ .+.++|.++++.+..++||...|+.+.|+|+...+++++.|-.|+||.............|.
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~ 303 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE 303 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccc
Confidence 45666666888888888 89999999999999999999999999999999999999999999999999888888889999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
.+|+.+..+|.|.||++++.|+...+.|++++..+..... ..-.+++.+|+|||- ++.+|..||.|++||+.++..
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEcCCccc
Confidence 9999999999999999999999999999999998877653 234589999999875 499999999999999999999
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+..|.+|.++|..++|+.+|.+|++++.|+.|++||++..+..++++..+
T Consensus 382 ~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999999999999888777666544
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=228.34 Aligned_cols=286 Identities=23% Similarity=0.372 Sum_probs=245.1
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--EeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+|...+..++.. ++..++.++.||++++|+-...+.. ..+.+|.+.+.+- .|+.+..+..+++|+.|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~--~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~-i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVT--DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS-ICYAESDKGRLVVGGMDT 81 (745)
T ss_pred eeEEEeccCccchheeEec--CCeEEeecCCCCceeeeeccCcccccceecccCcceeecc-ceeccccCcceEeecccc
Confidence 4557788899999888865 4457899999999999998765544 3466677766652 225544444599999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
++.+|...+..++..+.+|...|.++....++. +++|+.|.++++|.... ......+|...|.+++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~------------l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE------------LVYSLQGHTASVWAVA 147 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh------------hhcccCCcchheeeee
Confidence 999999999999999999999999999888865 99999999999998764 4455889999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|..+++-+++ .+++++.||.|+.|++ +++++.++.+|..-+
T Consensus 148 ~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v 222 (745)
T KOG0301|consen 148 SLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV 222 (745)
T ss_pred ecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEE
Confidence 99988 8899999999999984 78899999999999999999865 4788999999999999 899999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
.++....++..++++++|++++||+.. ++.+.+......|+++.+-++|. +++|+.||.|+||.......
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 999988888999999999999999875 88888877777999999988886 67789999999999885543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=221.13 Aligned_cols=176 Identities=19% Similarity=0.296 Sum_probs=136.8
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-------cEEEEE
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-------VSVVTF 532 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~ 532 (706)
+..|.|-||+++.....+... .....++..|+.+.|.| |...|+++++||.|++|.+..+ .+...+
T Consensus 600 g~gG~iai~el~~PGrLPDgv------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGV------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccc------ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 345667777776543221111 11122456789999999 7889999999999999998654 456678
Q ss_pred eecCCcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 533 RGHKRGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
..|...|+++.|+|- ...|++++.|-+|++||+.+++....+.+|.+.|..++|||||+.+++.+.||+|++|+.++++
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 889999999999994 5678999999999999999999999999999999999999999999999999999999998775
Q ss_pred -EEEEeccCC-CcEEEEEEcCCCCEEEEEeCCC
Q 005254 612 -CIATYDKHE-DKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 612 -~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg 642 (706)
++..-++.. ..--.+.|.-||+++++.|.|.
T Consensus 754 ~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 754 QPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred CccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 344333221 1223466777899888777663
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=201.71 Aligned_cols=289 Identities=15% Similarity=0.234 Sum_probs=233.6
Q ss_pred eeEEEeeCCceEEEEeeecc-----ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 318 GLLCVTADQQLLLYTTVEVP-----EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
.+++++....++-+.+...+ .....+.+.-....|.+.+.+++. ++.++++|+.|.+|++||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcce
Confidence 46778888888888777665 223344455566788899999998 6789999999999999999999999999
Q ss_pred eCCcceEEEeeeeeecCCC--EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGK--ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
-.|.+.++++. |.++.. + |++|+.||.|.+|+.....++..+++|.+.|+.++++|.++ +.++.+.|+.+++|+
T Consensus 80 l~HagsitaL~--F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 80 LSHAGSITALK--FYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWN 155 (362)
T ss_pred eccccceEEEE--ecCCcchhh-eeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeeh
Confidence 99999999998 666553 5 89999999999999999999999999999999999999998 889999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
+-.+.... ...-....+.+.|+|.|.+++.+..+ .|-+|.+.+......+... ..+.++.|. ++..
T Consensus 156 LV~Gr~a~-----------v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~ 221 (362)
T KOG0294|consen 156 LVRGRVAF-----------VLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSE 221 (362)
T ss_pred hhcCccce-----------eeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCce
Confidence 98774221 11222334559999999999888875 4999998877666655532 456777776 4778
Q ss_pred EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEE--EeCCCEEEEEeCCCCEEEEECCCC-----eEEEEeccCCCcE
Q 005254 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF--LTRGAQIVSCGADGLVKLWTVRTG-----ECIATYDKHEDKI 623 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v 623 (706)
|++|+.|+.|.+||..+..+...+.+|..+|..+.+ .|++.+|++++.||.|+|||++.. +++..+.. ...+
T Consensus 222 L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~Rl 300 (362)
T KOG0294|consen 222 LLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRL 300 (362)
T ss_pred EEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCcc
Confidence 999999999999999999999999999999999985 356789999999999999999865 34444433 3444
Q ss_pred EEEEE
Q 005254 624 WALAV 628 (706)
Q Consensus 624 ~~~~~ 628 (706)
+|+..
T Consensus 301 tCl~~ 305 (362)
T KOG0294|consen 301 TCLRV 305 (362)
T ss_pred ceeee
Confidence 55443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=232.99 Aligned_cols=362 Identities=21% Similarity=0.316 Sum_probs=276.7
Q ss_pred EEEEC-CCCCEEEEecCCCcEEEEECCCCe------EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-
Q 005254 107 GMACH-PSGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK- 178 (706)
Q Consensus 107 ~~~~s-~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 178 (706)
.+..+ |.++||.+||.||.|++|++..-. .+..+..|...|..++...+++. +++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t--lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT--LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc--eEEecCCceEEEeecccCc
Confidence 34444 366789999999999999985432 35677889999999999988877 999999999999999887
Q ss_pred -eeEEEeecccceEEEEEE-ecCCCEEEEEeCCCEEEEEeCCCCcc--eeeecCcceeeeEEeeCCCCCcccccccccch
Q 005254 179 -KCVATLDKHFSRVTSMAI-TSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 179 -~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
-+..++..|...|.|+++ .++...+++||-|+.|.+||+.++.. +...
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~---------------------------- 158 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF---------------------------- 158 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----------------------------
Confidence 577888999999999999 78888999999999999999986532 0000
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
T Consensus 159 -------------------------------------------------------------------------------- 158 (735)
T KOG0308|consen 159 -------------------------------------------------------------------------------- 158 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEE
Q 005254 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414 (706)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 414 (706)
..+..-+ ...++...+++++ ..+.+ .++
T Consensus 159 -----------------------------------------n~~t~~s--------l~sG~k~siYSLA--~N~t~-t~i 186 (735)
T KOG0308|consen 159 -----------------------------------------NNVTVNS--------LGSGPKDSIYSLA--MNQTG-TII 186 (735)
T ss_pred -----------------------------------------ccccccc--------CCCCCccceeeee--cCCcc-eEE
Confidence 0000000 1115666777776 54555 459
Q ss_pred EEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 415 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
++|+.++.+++||..+++.+..+.+|...|..+..+++|. .+++++.||+|++||+.... +...+..|.
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQr----------Cl~T~~vH~ 255 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQR----------CLATYIVHK 255 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccccc----------eeeeEEecc
Confidence 9999999999999999999999999999999999999998 89999999999999998654 777888999
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
..+.++..+|+-..+++|+.||.|..=|+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|..+-.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~------ 329 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD------ 329 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc------
Confidence 99999999999999999999999999999986444444446677888888766665677788999999976421
Q ss_pred eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 575 EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 575 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
..+++.+++.. -+.|....+.+... .+-..+.| .-+|..-+.-.|.++++|-...|.+.+||+-....
T Consensus 330 ---------~~l~~s~~~~~-~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 330 ---------IALSVSGDLDF-FSTDSNNHSCDLTN-TPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVK 397 (735)
T ss_pred ---------cccccCCCCCc-ccccCCCccccccC-CCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeee
Confidence 14445555544 33444445554321 22233333 22455555667899999999999999999988766
Q ss_pred HHHHH
Q 005254 655 REEAF 659 (706)
Q Consensus 655 ~~~~~ 659 (706)
.+..-
T Consensus 398 ~~d~g 402 (735)
T KOG0308|consen 398 VEDFG 402 (735)
T ss_pred hhhcc
Confidence 55443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=201.78 Aligned_cols=277 Identities=19% Similarity=0.344 Sum_probs=206.5
Q ss_pred CCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC-CeEE-EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 005254 58 GGSDTITALALSPD-DKLLFSSGHSREIRVWDLST-LKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 58 ~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 134 (706)
...+.|.+|+|||. ..++++++-||+|++|+++. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45679999999994 45556778899999999987 3433 334558999999999999999999999999999999999
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
+ +..+..|.++|.++.|.+......|++|+.|.+|++||.+...++.++. -...+.++..- ...++++..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5 5566779999999999988777789999999999999999999888875 34566666553 347888889999999
Q ss_pred EeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc
Q 005254 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294 (706)
Q Consensus 215 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 294 (706)
|+++.+........
T Consensus 181 ynL~n~~te~k~~~------------------------------------------------------------------ 194 (347)
T KOG0647|consen 181 YNLENPPTEFKRIE------------------------------------------------------------------ 194 (347)
T ss_pred EEcCCCcchhhhhc------------------------------------------------------------------
Confidence 99975432111000
Q ss_pred ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec
Q 005254 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 374 (706)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 374 (706)
....-.+.+++...+. +..+.|+-
T Consensus 195 -------------------------------------------------------SpLk~Q~R~va~f~d~-~~~alGsi 218 (347)
T KOG0647|consen 195 -------------------------------------------------------SPLKWQTRCVACFQDK-DGFALGSI 218 (347)
T ss_pred -------------------------------------------------------CcccceeeEEEEEecC-CceEeeee
Confidence 0001122233333322 22356666
Q ss_pred CCcEEEEeCCCc--eeeEeeeCCcc---------eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 375 IEQVQVYDLSSM--SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 375 ~~~i~~~d~~~~--~~~~~~~~~~~---------~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
+|.+.+..+..+ +.-..++.|.. .|..++ |.|..+. |++++.||++.+||-.....+...+.|..+
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~--FhP~hgt-lvTaGsDGtf~FWDkdar~kLk~s~~~~qp 295 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA--FHPVHGT-LVTAGSDGTFSFWDKDARTKLKTSETHPQP 295 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE--eecccce-EEEecCCceEEEecchhhhhhhccCcCCCc
Confidence 666666666554 33344554442 345555 7887777 999999999999999998888888999999
Q ss_pred eEEEEEecCCCeEEEEecCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d 463 (706)
|++.+|+.+|..+..+.+.|
T Consensus 296 Itcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 296 ITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cceeEecCCCCEEEEEeecc
Confidence 99999999999655555544
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-26 Score=220.66 Aligned_cols=479 Identities=18% Similarity=0.254 Sum_probs=312.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCC---CEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDD---KLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.-+||+|++++....++.|.||...++.++..+.+|..+++.+.+.|.. .++.+++.+|.|++||...+.++.++..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 6789999999999999999999999999999999999999999999865 4677999999999999999888877653
Q ss_pred cCCCeE-----------------------------------------------------------EEEECCCCCEEEEec
Q 005254 101 HDGPAI-----------------------------------------------------------GMACHPSGGLLATAG 121 (706)
Q Consensus 101 ~~~~v~-----------------------------------------------------------~~~~s~~~~~l~~~~ 121 (706)
+ .++. ++.+++.|.+.+..-
T Consensus 101 ~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~ 179 (792)
T KOG1963|consen 101 N-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH 179 (792)
T ss_pred C-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE
Confidence 2 1121 222222222222221
Q ss_pred CCCcEEEEECCCCeEEEE----eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC----CeeEEEeecccceEEE
Q 005254 122 ADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVTS 193 (706)
Q Consensus 122 ~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~ 193 (706)
+..+.+|+...+..... -..|...+++.++||+++. +++|..||.|.+|.--. ....+.+..|...|.+
T Consensus 180 -~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 180 -MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred -eeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 23466666665431110 1247777999999998876 99999999999996422 2234567889999999
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
++|+++|.+|++||.+|.+.+|.+.+++...-.....++..+.+++++. ......+|
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~-----------------------~~sl~~~D 313 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD-----------------------LYSLVLED 313 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC-----------------------eEEEEecC
Confidence 9999999999999999999999999999555555677888999998886 55566678
Q ss_pred CeEEEEECCCCeEEeeccCccccccc-cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFE-MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
..|.+....+..+....+........ ......-.+.+.+.|..+.++..+..+.+.+|++...... .++...
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~------ 386 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVC------ 386 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEE------
Confidence 88888877555332222211111011 1222334456667776667777777777777776654321 000000
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--------C--CCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--------K--DNS 422 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------~--dg~ 422 (706)
.-.+.+ +. + .+...++.+. ..-.+.+ ++|.. . .-.
T Consensus 387 -----~~n~~~--~~--------~-----------------n~~v~itav~--~~~~gs~-maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 387 -----DENYSD--GD--------V-----------------NIQVGITAVA--RSRFGSW-MATLEARIDKFNFFDGEVS 431 (792)
T ss_pred -----eecccC--Cc--------c-----------------eeEEeeeeeh--hhccceE-EEEeeeeehhhhccCceEE
Confidence 000000 00 0 0011112221 2222222 33321 2 235
Q ss_pred EEEEeCCCceEE-----EEEeCCCcCeEEEEEecCCCe-EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 423 VRLWDSESRCCV-----GVGTGHMGAVGAVAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 423 i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
+++|-......- ....+|...+.+.++.+..+. ..++++.||.+++|-+...+........+.+...-.-|..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 677865543221 223467777777666654443 79999999999999997776655555566666666668999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCC--CEEEEecCCCcEEEEEcCCCceEE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
+++++|+.||..|+++ .++.|.+||..+ .+..........++..+.+.... ...+.......+.+|++.+.....
T Consensus 512 i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 512 ITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 9999999999776665 578999999988 44433333333344444443211 123334456779999987776654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-26 Score=182.63 Aligned_cols=300 Identities=25% Similarity=0.363 Sum_probs=232.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---------------eEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---------------KCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
..|+ .+..|.+++|+|.|.+.|+|+...+++|--...- .....-+.|.+.|.|.+|||+|++||
T Consensus 27 ~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 27 NILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 3443 5778999999999999999999999988754321 11123356899999999999999999
Q ss_pred EecCCCcEEEEECCCCeEE-----EEeeCCCCcEEEEEEcCC--CCceEEEEEe-cCCeEEEEECCCCeeEEEeecccce
Q 005254 119 TAGADRKVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPD--TDKSLLFSGS-DDATVRVWDLLAKKCVATLDKHFSR 190 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~--~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (706)
+|+.|.+|++.-.....+. ..+.-|.+.|..++|..+ ....+|++++ .|..|++-|-..|+..+.+.+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 9999999998776543221 345669999999999643 3445666654 5778888899999999999999999
Q ss_pred EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 191 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
|.++ ++=+|-.+++|+.|.+|++||++-..++..+.....
T Consensus 186 ilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------------------------------------- 225 (350)
T KOG0641|consen 186 ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------------------------------------- 225 (350)
T ss_pred EEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCccc---------------------------------------
Confidence 9887 444677899999999999999875444333211000
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
T Consensus 226 -------------------------------------------------------------------------------- 225 (350)
T KOG0641|consen 226 -------------------------------------------------------------------------------- 225 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
+ + --....+.++. ..|.++. +++|..|....+||++.
T Consensus 226 --------------~----------~----------------glessavaav~--vdpsgrl-l~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 226 --------------D----------G----------------GLESSAVAAVA--VDPSGRL-LASGHADSSCMLYDIRG 262 (350)
T ss_pred --------------C----------C----------------CcccceeEEEE--ECCCcce-eeeccCCCceEEEEeeC
Confidence 0 0 00112344443 6676766 99999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
++.++.+..|...|.++.|+|... ++++++.|..|++-|++..- ...........|...+..+.|.|..--++
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgdl------a~el~~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGDL------AHELPIMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccch------hhcCceEEEEeccCceEEEEecCccceee
Confidence 999999999999999999999865 99999999999999997642 12224556777888899999999998899
Q ss_pred EeeCCCcEEEEeCC
Q 005254 511 TGSQDRTACVWRLP 524 (706)
Q Consensus 511 ~~~~dg~i~i~d~~ 524 (706)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-27 Score=229.00 Aligned_cols=165 Identities=25% Similarity=0.335 Sum_probs=138.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-------------EEeeccCCCeEEEEECC-CCCEEEEecCCCc
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-------------RSWKGHDGPAIGMACHP-SGGLLATAGADRK 125 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 125 (706)
-..|.....++|+..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666667777766777777777777776544322 14678999999999999 8899999999999
Q ss_pred EEEEECCCC-------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec
Q 005254 126 VLVWDVDGG-------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198 (706)
Q Consensus 126 i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 198 (706)
|++||+.++ +.+..+.+|...|.+++|+|++. .+|++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 999999765 35677889999999999999753 3599999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCEEEEEeCCCCcceee
Q 005254 199 DGSTLISAGRDKVVNLWDLRDYSCKLT 225 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~~w~~~~~~~~~~ 225 (706)
+|.+|++++.|+.|++||+++++.+..
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 999999999999999999988765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=215.44 Aligned_cols=293 Identities=20% Similarity=0.315 Sum_probs=224.9
Q ss_pred cCeEEEEECCCCeEEEEeeccCC-CeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDG-PAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
..++.+||+.+|....++++... .-.++..- .+.|++++. ....|.+|.+..........--.++|.+++-+|+|..
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 34599999999999999886522 11122111 235666664 4567999999776655533446788999999998765
Q ss_pred eEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
++.|+..|.|++|.+.+|..+..+..|...|+|+.|+.||.++++++.||.|.+|.+.+
T Consensus 96 --l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------------------- 154 (476)
T KOG0646|consen 96 --LLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------------------- 154 (476)
T ss_pred --EEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-------------------
Confidence 88888999999999999999999999999999999999999999999999999998631
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (476)
T KOG0646|consen 155 -------------------------------------------------------------------------------- 154 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (476)
T KOG0646|consen 155 -------------------------------------------------------------------------------- 154 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
++.+..++ +.+++..+..|.-+|+.+...+.+ ..++++++.|.++++||+..+
T Consensus 155 ---------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--- 208 (476)
T KOG0646|consen 155 ---------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--- 208 (476)
T ss_pred ---------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---
Confidence 00000010 111222233444444444444331 237999999999999999876
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC----------------ccEEEEEeecCC--cE
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----------------LVSVVTFRGHKR--GI 539 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~--~v 539 (706)
...........+.+++++|-++.+.+|+.+|.|.+.++.. +..+..+.+|.+ +|
T Consensus 209 --------~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 209 --------VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred --------eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 3333445677899999999999999999999999987643 234566778888 99
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
+|++.+-||..|++|+.||.++|||+.+.++++++....++|+.+.+.|-
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999999999999999999999999999998867889999999664
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=215.76 Aligned_cols=302 Identities=15% Similarity=0.259 Sum_probs=237.7
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+....+.+|.+.|.+++-.|..-..+++|+.||.|++||+.+..+...+..|.+.|.++. +.. .. +++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~--v~~--~~-~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGIC--VTQ--TS-FFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEE--ecc--cc-eEEecCCcce
Confidence 445566889999999999887778999999999999999999999999999999999997 333 33 8999999999
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
+.|-+... .+.++. ..+.+..+.-+..+. .+++++. .|.|||..... +...+.-....|.++.|+
T Consensus 132 K~wk~~~~-p~~til-g~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~----------Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTIL-GKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN----------PVSSMSWGADSISSVKFN 196 (433)
T ss_pred eeeeccCC-cceeee-ccccccccccccccc-cccccCc--eeeecccccCC----------ccceeecCCCceeEEecC
Confidence 99987763 333333 233444555444433 5777765 48999987653 444455555678999999
Q ss_pred CCC-CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCE
Q 005254 504 PND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSV 581 (706)
Q Consensus 504 ~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i 581 (706)
|.. ..|+++..|+.|.+||++++.++..+. -...-..++|+|.+-.+.++++|..++.||++.. .++....+|.+.|
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV 275 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV 275 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeE
Confidence 965 567777799999999999998877655 2344577999998778899999999999999765 5678888999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHH
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFR 660 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 660 (706)
..+.|||.|+-+++|+.|.+|+||....+..-..+. ..-..|.++.||.|.+++++|+.|+.|++|+....+.......
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCCh
Confidence 999999999999999999999999998776543332 2234689999999999999999999999999776554443333
Q ss_pred HHHHHH
Q 005254 661 KEEEAV 666 (706)
Q Consensus 661 ~~~~~~ 666 (706)
.+....
T Consensus 356 rEk~~~ 361 (433)
T KOG0268|consen 356 REKNKL 361 (433)
T ss_pred hHHHHH
Confidence 333333
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=231.41 Aligned_cols=235 Identities=16% Similarity=0.258 Sum_probs=190.6
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
.|+.++.+++|+......+..+.+|.+.|.+++|+|+...+|++|+.|+.|++|++......... .......+.+|..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--IKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--cccceEEeecCCC
Confidence 35668899999988888888899999999999999985559999999999999999754211100 0113345678999
Q ss_pred ceEEEEEcCCCCE-EEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 496 DINSLAVAPNDSL-VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 496 ~i~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
.|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999999999875 5789999999999999998877776 6678999999999999999999999999999999999999
Q ss_pred eecccCEEEE-----EEEeCCCEEEEEeCCC----CEEEEECCC-CeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 575 EGHTSSVLRA-----SFLTRGAQIVSCGADG----LVKLWTVRT-GECIATYD--KHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 575 ~~~~~~i~~~-----~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+|.+.+... .|++++.+|++++.|+ .|++||+++ ++++..+. .+.+.+......+++.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 9998765433 3458889999988774 799999985 56665543 3444444555566788999999999
Q ss_pred cEEEEECCchh
Q 005254 643 LVNLWHDSTAA 653 (706)
Q Consensus 643 ~i~vw~~~~~~ 653 (706)
.|++|++..+.
T Consensus 286 tIr~~e~~~~~ 296 (568)
T PTZ00420 286 NCRYYQHSLGS 296 (568)
T ss_pred eEEEEEccCCc
Confidence 99999997663
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=200.91 Aligned_cols=201 Identities=18% Similarity=0.310 Sum_probs=158.8
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
|...+-.+-....+. ++++++.|..|.+|++... ...........-...++||+|+++++++..-.|+
T Consensus 186 h~v~~i~iGiA~~~k-~imsas~dt~i~lw~lkGq-----------~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVk 253 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAK-YIMSASLDTKICLWDLKGQ-----------LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVK 253 (420)
T ss_pred cccceEEEeecCCce-EEEEecCCCcEEEEecCCc-----------eeeeeccccccccceeeCCCCcEEEEecCCCCce
Confidence 455565666666655 9999999999999999843 4444444555567789999999999999999999
Q ss_pred EEeCC--------CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC-------CceEEEEe----ecccC
Q 005254 520 VWRLP--------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-------GSCLKTFE----GHTSS 580 (706)
Q Consensus 520 i~d~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~----~~~~~ 580 (706)
+|.+- .-.....+++|...|..++|+++...+++.+.||+++|||++- .+.+++.. ...+.
T Consensus 254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 99863 2244567899999999999999999999999999999999742 22233321 12334
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
...+.++|+|+.||... ...++++..++|+....++ .|...|.+|+|+++|++++|+| |..+++..-.++-.
T Consensus 334 p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~ 406 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGWH 406 (420)
T ss_pred ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCchh
Confidence 55899999999888754 4679999999999887776 7999999999999999999987 77889887555543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=200.57 Aligned_cols=275 Identities=25% Similarity=0.345 Sum_probs=214.0
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-CeeE-EEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
.....|.+++|||. ...++++++.||+||+|+++. +... +....|.++|.+++|+.||..+++++.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccc-cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 46778999999994 445677999999999999986 3332 34567899999999999999999999999999999976
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++..
T Consensus 104 ~Q~~---------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 104 GQVS---------------------------------------------------------------------------- 107 (347)
T ss_pred CCee----------------------------------------------------------------------------
Confidence 5422
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 108 -------------------------------------------------------------------------------- 107 (347)
T KOG0647|consen 108 -------------------------------------------------------------------------------- 107 (347)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+..|.+++.++.+..... ...|++|+.|.+|+.||.+...++..+.. .+.+.++..-.. +++.
T Consensus 108 -----------~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~p---m~vV 171 (347)
T KOG0647|consen 108 -----------QVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYP---MAVV 171 (347)
T ss_pred -----------eeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeeec-cceeeehhccCc---eeEE
Confidence 2223444454444222122 23499999999999999998888877653 356666665544 7899
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCC
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKR 537 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~ 537 (706)
+..+..|.+|++++...+ .........-.++|++..+|....+.|+-+|.+.|..+..+ +.-..|+.|..
T Consensus 172 ata~r~i~vynL~n~~te--------~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTE--------FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred EecCCcEEEEEcCCCcch--------hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence 999999999999765321 11222224456889999999888899999999999998876 44455666652
Q ss_pred ---------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 538 ---------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 538 ---------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.|.+++|+|....|++++.||++..||-.....+++.+.|..+|++..|+.+|.++|.+.
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 578899999999999999999999999888888888888999999999999999887653
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=204.11 Aligned_cols=332 Identities=23% Similarity=0.384 Sum_probs=251.1
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
+++..+.+|...|+.++-... ..++.+++.|.+-+||.+++++++.++.+|.+.|+++.|++.+.++++++.|++-.+
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~t--qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADST--QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eehhhhcccccceeeehhhcC--CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 345667899999999987653 446899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc
Q 005254 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294 (706)
Q Consensus 215 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 294 (706)
|...-.-.+.....+... +...
T Consensus 217 W~~av~~~vP~~~a~~~h-----SsEe----------------------------------------------------- 238 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDH-----SSEE----------------------------------------------------- 238 (481)
T ss_pred HHHhhcCcCCCCCCCCCC-----Cchh-----------------------------------------------------
Confidence 984321100000000000 0000
Q ss_pred ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec
Q 005254 295 TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN 374 (706)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 374 (706)
....+.+..... ++. ..+.
T Consensus 239 -----------------------------------------------------E~e~sDe~~~d~-----d~~---~~sD 257 (481)
T KOG0300|consen 239 -----------------------------------------------------EEEHSDEHNRDT-----DSS---EKSD 257 (481)
T ss_pred -----------------------------------------------------hhhccccccccc-----ccc---cccC
Confidence 000000000000 000 0000
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
...|+ .++..+.+|...+.+.+ +...++. +++++.|.+-.+||.++++.+..+.+|....+.++-+|..+
T Consensus 258 ~~tiR-------vPl~~ltgH~~vV~a~d--WL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr 327 (481)
T KOG0300|consen 258 GHTIR-------VPLMRLTGHRAVVSACD--WLAGGQQ-MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQR 327 (481)
T ss_pred Cceee-------eeeeeeeccccceEehh--hhcCcce-eeeeeccccceeeeeccCceeccccCcchhccccccCCcce
Confidence 01111 23447788999998888 6666666 99999999999999999999999999999999999999965
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEe
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFR 533 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 533 (706)
++++.+.|.+.++||++.. ......+.+|...|++..|..+. .+++|+.|.+|++||+++.. ++.+++
T Consensus 328 -LVvTsSrDtTFRLWDFRea---------I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 328 -LVVTSSRDTTFRLWDFREA---------IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred -EEEEeccCceeEeccchhh---------cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 9999999999999999842 33678899999999999998765 68899999999999999874 455555
Q ss_pred ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-----EeecccCEEEEEEEeCC--CEEEEEeCCCCEEEEE
Q 005254 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRG--AQIVSCGADGLVKLWT 606 (706)
Q Consensus 534 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd 606 (706)
...++..++.+..+..++.--.+..|++||++ |..+.. -.+|..-|++++|..+- .-|++++.|..+.-|+
T Consensus 397 -tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 397 -TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred -cCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 56789999999988899999999999999996 443333 34788899999998653 3589999999999999
Q ss_pred CCCC
Q 005254 607 VRTG 610 (706)
Q Consensus 607 ~~~~ 610 (706)
+...
T Consensus 475 in~p 478 (481)
T KOG0300|consen 475 INTP 478 (481)
T ss_pred eccc
Confidence 8653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=212.28 Aligned_cols=294 Identities=26% Similarity=0.377 Sum_probs=229.7
Q ss_pred EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE----E------------e--eCCCCcEEEEEEcCCC
Q 005254 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----Y------------F--KGHKGVVSSILFHPDT 156 (706)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~----~------------~--~~~~~~v~~~~~~~~~ 156 (706)
...+..|.-++.+++++||+++.++++.+++|.=|++.+++... . . +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 55667799999999999999999999999999999998876331 1 0 2688889999999998
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
++ +++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....|++++.|+.+++|+++....+
T Consensus 215 ky--latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v------------- 279 (479)
T KOG0299|consen 215 KY--LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV------------- 279 (479)
T ss_pred cE--EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-------------
Confidence 87 999999999999999999999999999999999999988889999999999999997643322
Q ss_pred eeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC
Q 005254 237 AIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN 316 (706)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T Consensus 280 -------------------------------------------------------------------------------- 279 (479)
T KOG0299|consen 280 -------------------------------------------------------------------------------- 279 (479)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc
Q 005254 317 QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396 (706)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~ 396 (706)
..+.+|.
T Consensus 280 -------------------------------------------------------------------------etlyGHq 286 (479)
T KOG0299|consen 280 -------------------------------------------------------------------------ETLYGHQ 286 (479)
T ss_pred -------------------------------------------------------------------------HHHhCCc
Confidence 1455677
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
..|..++ .....+. +.+|+.|+++++|++... ....+.++.+.+-+++|-.+. .+++|+.+|.|.+|++...++
T Consensus 287 d~v~~Id--aL~reR~-vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 287 DGVLGID--ALSRERC-VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred cceeeec--hhcccce-EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 7777776 5555554 777789999999999543 333567788899999998875 599999999999999987653
Q ss_pred CCCcccccceeE--EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----cEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
............ ....++..|++++..|..+++++|+.+|.|++|-+.++ .++..+. -.+-|++++|+++|++
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCE
Confidence 222111111111 11123358999999999999999999999999999877 3444444 5678999999999997
Q ss_pred EEEe-cCCCcEEEE
Q 005254 551 VITA-SGDKTIKIW 563 (706)
Q Consensus 551 l~~~-~~dg~i~iw 563 (706)
+++| +....+--|
T Consensus 440 ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 440 IVAGIGKEHRLGRW 453 (479)
T ss_pred EEEeccccccccee
Confidence 6665 334333333
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=214.75 Aligned_cols=256 Identities=20% Similarity=0.360 Sum_probs=215.9
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE----------EEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----------VGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
.-.|.+.|..+. ..|.+..++++++..+.+.|||..+... -..+.+|...-.+++|++.....|++++
T Consensus 120 ~i~h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 120 KINHDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred eccCCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 345788888887 8899999899999999999999865321 1256788887888999999888999999
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCC--CccEEEEEeecCCc
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP--DLVSVVTFRGHKRG 538 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~ 538 (706)
.|++|.+||+...... .........+.+|...|..++|++ +..++++++.|+.+.|||++ +.++.....+|..+
T Consensus 198 ~d~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 198 DDHTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred CCCcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 9999999999876543 223446778899999999999999 55788899999999999999 56777778899999
Q ss_pred EEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCC------
Q 005254 539 IWSVEFSP-VDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRT------ 609 (706)
Q Consensus 539 v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~------ 609 (706)
|.+++|+| ++..||+|+.|++|++||+++. +++.++.+|...|.++.|||+. ..||+++.|+.+.|||+..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 99999999 4567899999999999999876 4688999999999999999965 4789999999999999963
Q ss_pred --------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCch
Q 005254 610 --------GECIATYDKHEDKIWALAVGKKTEM-FATGGSDALVNLWHDSTA 652 (706)
Q Consensus 610 --------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~ 652 (706)
.+++..-.||...|..+.|+|+..+ |+++++|+.+.||+....
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1245566699999999999999886 568899999999998743
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=200.05 Aligned_cols=315 Identities=21% Similarity=0.288 Sum_probs=227.0
Q ss_pred eEEEEEccCCeEE-----EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE--EEe--eccCCCeEEEEEC
Q 005254 41 SINIVDLSNASIK-----STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSW--KGHDGPAIGMACH 111 (706)
Q Consensus 41 ~i~i~d~~~~~~~-----~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~s 111 (706)
.+.-|+.+..... ..|++|.+.|++++||.||++||+++.|+.|+||++...... +.+ .-.-+..+.++|+
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence 3666776665543 467899999999999999999999999999999999864321 111 1122356789999
Q ss_pred CCCCEEEEe-cCCCcEEEEECCC---CeEEE---------EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 112 PSGGLLATA-GADRKVLVWDVDG---GFCTH---------YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 112 ~~~~~l~~~-~~d~~i~vw~~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
||.+-+++. -...++++|.+.. |.... .-+.|+-.+..+-... ...++++++.|..|.+|++. |
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-C
Confidence 998866554 4556799998743 22111 1123555666665554 44569999999999999997 9
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
+.+..+......-+..+.+|+|+++++++..-.|++|.+-
T Consensus 219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~---------------------------------------- 258 (420)
T KOG2096|consen 219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI---------------------------------------- 258 (420)
T ss_pred ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE----------------------------------------
Confidence 9998887777777888999999999999988888888631
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 259 -------------------------------------------------------------------------------- 258 (420)
T KOG2096|consen 259 -------------------------------------------------------------------------------- 258 (420)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
|..++
T Consensus 259 -------------------------------------------------------------------f~kdG-------- 263 (420)
T KOG2096|consen 259 -------------------------------------------------------------------FTKDG-------- 263 (420)
T ss_pred -------------------------------------------------------------------eccCc--------
Confidence 00001
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcce
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDI 497 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i 497 (706)
++ ..-..+..+++|...|...+|+++.. .+++.+.||++++||.+-.....+.+..++.. ..+....+..
T Consensus 264 ---~f-----qev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 264 ---TF-----QEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred ---ch-----hhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCc
Confidence 00 00111234568889999999999976 89999999999999987543333333332222 2223334445
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
..+.++|+|+.|+.+. ...+++|..++++....+.. |...|.+++|+++|+++++++ |..+++..
T Consensus 335 ~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5899999999998765 45799999999877766654 999999999999999999986 55677765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=227.69 Aligned_cols=291 Identities=18% Similarity=0.318 Sum_probs=236.7
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCce------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR- 431 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 431 (706)
+....+++++|.+++.||.|++|+..... ....++.|...+..+. ...+++. +++++.|-+|.+|+...+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDii--L~~~~~t-lIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDII--LCGNGKT-LISASSDTTVKVWNAHKDN 106 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHH--hhcCCCc-eEEecCCceEEEeecccCc
Confidence 33445678899999999999999987533 3556788999988887 4455555 999999999999999877
Q ss_pred -eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEE
Q 005254 432 -CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l 509 (706)
-+...+..|...|.++++-.....++++|+-|+.|.+||++.+........+......+ .++..+|.+++.++.|..+
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 56777889999999999944445599999999999999999774311111111122222 2788899999999999999
Q ss_pred EEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
++|+..+.+++||.++.+.+..+++|...|..+..++||..+++++.||+|++||+.-.+|+.++..|...+.++..+|+
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s 266 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS 266 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-..+.+|+.||.|..=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|.....
T Consensus 267 f~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 267 FTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 999999999999999999985433333233456666666644444466677888888876543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-26 Score=179.08 Aligned_cols=289 Identities=24% Similarity=0.382 Sum_probs=223.6
Q ss_pred EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC------CCe---------EEEEeeCCCCcEEEEEEcCCCCce
Q 005254 95 LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD------GGF---------CTHYFKGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 95 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~------~~~---------~~~~~~~~~~~v~~~~~~~~~~~~ 159 (706)
+..+. .+..|.+++|.|.|.+.|+|+...+++|--.. .+. ..+.-+.|.+.|.|.+|+|+|+.
T Consensus 26 i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel- 103 (350)
T KOG0641|consen 26 INILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL- 103 (350)
T ss_pred EEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe-
Confidence 33344 56789999999999999999998888876542 111 11233568999999999999886
Q ss_pred EEEEEecCCeEEEEECCCCeeE-----EEeecccceEEEEEEecC----CCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 160 LLFSGSDDATVRVWDLLAKKCV-----ATLDKHFSRVTSMAITSD----GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
+++|+.|.+|++.-.+...+. ..+.-|.+.|..++|..+ +..|++++.
T Consensus 104 -iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga---------------------- 160 (350)
T KOG0641|consen 104 -IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA---------------------- 160 (350)
T ss_pred -EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC----------------------
Confidence 999999999999765443321 234557777777777543 223333321
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
T Consensus 161 -------------------------------------------------------------------------------- 160 (350)
T KOG0641|consen 161 -------------------------------------------------------------------------------- 160 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE
Q 005254 311 TVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390 (706)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~ 390 (706)
.|..|++-|...++...
T Consensus 161 ---------------------------------------------------------------gdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 161 ---------------------------------------------------------------GDCKIYITDCGRGQGFH 177 (350)
T ss_pred ---------------------------------------------------------------CcceEEEeecCCCCcce
Confidence 22344455555566666
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-------CCcCeEEEEEecCCCeEEEEecCC
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-------HMGAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d 463 (706)
.+.+|.+.|.++ ++-++-. +++|+.|.+|++||++-..++..+.. ..+.|.++++.|.|+ +|++|-.|
T Consensus 178 a~sghtghilal---yswn~~m-~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~d 252 (350)
T KOG0641|consen 178 ALSGHTGHILAL---YSWNGAM-FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHAD 252 (350)
T ss_pred eecCCcccEEEE---EEecCcE-EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCC
Confidence 778888888777 4444544 99999999999999998888876542 246799999999998 99999999
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc----cEEEEEeecCCcE
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL----VSVVTFRGHKRGI 539 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v 539 (706)
....+||++.+. ....+..|...|.|+.|+|...++++++.|..|++-|+... -++.....|...+
T Consensus 253 ssc~lydirg~r----------~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 253 SSCMLYDIRGGR----------MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred CceEEEEeeCCc----------eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce
Confidence 999999999875 67788899999999999999999999999999999998642 3445566799999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 999999999889999999999999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-27 Score=226.74 Aligned_cols=248 Identities=15% Similarity=0.196 Sum_probs=195.6
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce--------EEEEEeCCCcC
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--------CVGVGTGHMGA 443 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~ 443 (706)
|+..+.+.+|+.........+.+|...|.+++ ++|....+|++|+.|+.|++||+.++. .+..+.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~la--fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQ--FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEE--EcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 34457899999888888888999999999998 888755559999999999999997642 34467789999
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
|.+++|+|++..++++++.|++|++||+.... ....+ .+...|.+++|+|+|.+|++++.|+.|++||+
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~----------~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK----------RAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc----------EEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 99999999988778899999999999998653 22222 25578999999999999999999999999999
Q ss_pred CCccEEEEEeecCCcEEE-----EEEccCCCEEEEecCCC----cEEEEEcCC-CceEEEEee--cccCEEEEEEEeCCC
Q 005254 524 PDLVSVVTFRGHKRGIWS-----VEFSPVDQVVITASGDK----TIKIWSISD-GSCLKTFEG--HTSSVLRASFLTRGA 591 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~i~~~~~s~~~~ 591 (706)
++++.+..+.+|.+.+.. ..|++++.+|++++.|+ +|+|||+++ .+++..+.. +.+.+......++|.
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 999999999999876543 33568889999988764 799999985 556655442 223333344455688
Q ss_pred EEEEEeCCCCEEEEECCCCeEEEEec--cCCCcEEEEEEcCCCC
Q 005254 592 QIVSCGADGLVKLWTVRTGECIATYD--KHEDKIWALAVGKKTE 633 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~ 633 (706)
++++|+.|+.|++|++..+.. ..+. .+..++.+++|.|...
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 999999999999999987753 2222 3567788899988643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=217.83 Aligned_cols=283 Identities=23% Similarity=0.392 Sum_probs=239.7
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE--EEeeccCCCeEE-EEECC-CCCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL--RSWKGHDGPAIG-MACHP-SGGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~s~-~~~~l~~~~~d~~ 125 (706)
-++.+.+.||...|..+++.+.. .+++++.||++++|+-...+.+ +.+.+|.+.|.. +++-+ ++.+|++|+.|..
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45678899999999999977665 7889999999999997665543 456778887777 88886 5557999999999
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
|.+|...+..++..+++|+..|.+++...++. +++|+.|.++++|.. +++...+++|...|+++...|++ .+++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc---eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEe
Confidence 99999999999999999999999999776654 899999999999974 66667799999999999999988 7999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
|+.|..|++|.-.+ .
T Consensus 157 gsaDKtIklWk~~~--~--------------------------------------------------------------- 171 (745)
T KOG0301|consen 157 GSADKTIKLWKGGT--L--------------------------------------------------------------- 171 (745)
T ss_pred ccCcceeeeccCCc--h---------------------------------------------------------------
Confidence 99999999997532 1
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
.+.+.+|...|..+++.+
T Consensus 172 ------------------------------------------------------------l~tf~gHtD~VRgL~vl~-- 189 (745)
T KOG0301|consen 172 ------------------------------------------------------------LKTFSGHTDCVRGLAVLD-- 189 (745)
T ss_pred ------------------------------------------------------------hhhhccchhheeeeEEec--
Confidence 134456777777787774
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
+..++++++||.|+.|++ +++++..+.+|...+.+++ ..++++. ++++++|+++++|+.. .+.+.+....-.+.
T Consensus 190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~-Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW 263 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGL-IVSTGEDRTLRIWKKD--ECVQVITLPTTSIW 263 (745)
T ss_pred CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCe-EEEecCCceEEEeecC--ceEEEEecCccceE
Confidence 446888999999999999 7888889999999999998 6677776 9999999999999977 77777777777999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
++.+-++|. +++|+.||.|++|.....
T Consensus 264 sa~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 264 SAKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEEeeCCC--EEEeccCceEEEEEeccc
Confidence 999999987 999999999999988754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=190.28 Aligned_cols=270 Identities=22% Similarity=0.323 Sum_probs=201.9
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
....|+++.|+|.+..|++++-||.+++||+....+...++ |..++.+++|.++ ..+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999999987777777 8999999999984 578899999999999999887544
Q ss_pred EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+..|...|.++.+++.... +++|+.|++|++||.+.......+.. ...|.++.. .|..|++|+.+..+.+||++
T Consensus 90 -igth~~~i~ci~~~~~~~~--vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGC--VISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred -eccCCCceEEEEeeccCCe--EEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 4569999999999986665 99999999999999987655555543 347887766 46689999999999999998
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+.....+....
T Consensus 164 n~~~~~q~reS--------------------------------------------------------------------- 174 (323)
T KOG1036|consen 164 NLDEPFQRRES--------------------------------------------------------------------- 174 (323)
T ss_pred cccchhhhccc---------------------------------------------------------------------
Confidence 76533211000
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
.-.-.+.+++..|++..+++++-+|++
T Consensus 175 ---~lkyqtR~v~~~pn~eGy~~sSieGRV-------------------------------------------------- 201 (323)
T KOG1036|consen 175 ---SLKYQTRCVALVPNGEGYVVSSIEGRV-------------------------------------------------- 201 (323)
T ss_pred ---cceeEEEEEEEecCCCceEEEeecceE--------------------------------------------------
Confidence 001112333344444444444444444
Q ss_pred EEEeCCCc----eeeEeeeCCc---------ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 379 QVYDLSSM----SCSYVLAGHS---------EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 379 ~~~d~~~~----~~~~~~~~~~---------~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
.+=.++.. +....++.|. -+|.+++ |+|-.+. |++|+.||.|.+||+.+.+.+..+......|.
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~--Fhp~~~t-faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~ 278 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA--FHPIHGT-FATGGSDGIVNIWDLFNRKRLKQLAKYETSIS 278 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE--eccccce-EEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence 33322222 2222333332 2567777 7777666 99999999999999999999999888888899
Q ss_pred EEEEecCCCeEEEEecC
Q 005254 446 AVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~ 462 (706)
+++|+.+|. .|+.++.
T Consensus 279 slsfs~dG~-~LAia~s 294 (323)
T KOG1036|consen 279 SLSFSMDGS-LLAIASS 294 (323)
T ss_pred EEEeccCCC-eEEEEec
Confidence 999999998 6776653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=204.52 Aligned_cols=269 Identities=22% Similarity=0.269 Sum_probs=222.7
Q ss_pred CcEEEEeCCCceeeEeeeCC-cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
..+.+||+.++.....+++. ...-.++. .-...+++++-.....+.+|.+..........--.+++.+++-+|.|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~---~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLT---ALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhh---hhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCce
Confidence 45899999999988888776 22222221 122345455555666899999887665554444568899999999987
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC---------C
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP---------D 525 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~---------~ 525 (706)
+|+.|+..|.|++|.+.++. ....+.+|-..|+|+.|+.||.++++|+.||.|.+|.+. +
T Consensus 95 -~l~ag~i~g~lYlWelssG~----------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 95 -FLLAGTISGNLYLWELSSGI----------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred -EEEeecccCcEEEEEecccc----------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 78888899999999999875 556668899999999999999999999999999999863 3
Q ss_pred ccEEEEEeecCCcEEEEEEccC--CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVK 603 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 603 (706)
.+++..+..|.-+|+++...+. ..+|++++.|.++++||+..+.++.++. ....+.+++.+|-++.+.+|+++|.|.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 4678889999999999998875 4689999999999999999999998887 567899999999999999999999999
Q ss_pred EEECCC----------------CeEEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 604 LWTVRT----------------GECIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 604 iwd~~~----------------~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+.++.. +..+..+.+|.+ .|+|++++-||..|++|+.||.++|||+.+-+......
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 887743 335666778988 99999999999999999999999999999887766554
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=189.84 Aligned_cols=229 Identities=21% Similarity=0.333 Sum_probs=181.9
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
+..++.+++|. +...+++++.||.|+.+|+.++... .+..|..++.|+. ..+..+. +++|+.|++|++||....
T Consensus 53 ~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~--~~~~~~~-vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 53 HGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIE--YSYEVGC-VISGSWDKTIKFWDPRNK 126 (323)
T ss_pred cCCceeeeecc--CCceEEEeccCceEEEEEecCCcce-eeccCCCceEEEE--eeccCCe-EEEcccCccEEEEecccc
Confidence 34556666665 3567777888888888888776654 5677999999998 6666666 999999999999999875
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
.....+. ....|.++....+ .|++|+.+..+.+||++...... .......+-.+.|+++-|++.-.++
T Consensus 127 ~~~~~~d-~~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~ 194 (323)
T KOG1036|consen 127 VVVGTFD-QGKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVV 194 (323)
T ss_pred ccccccc-cCceEEEEeccCC---EEEEeecCceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEE
Confidence 5554444 3347888887765 79999999999999998764322 1112233456899999999888999
Q ss_pred eeCCCcEEEEeCCCc----cEEEEEeecC---------CcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 512 GSQDRTACVWRLPDL----VSVVTFRGHK---------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
++-||.|.+=.+... +....|+.|. .+|.+++|+|-.+.|+||+.||.|.+||+.+.+.+..+....
T Consensus 195 sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 195 SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 999999998777665 4555677665 379999999999999999999999999999999999998777
Q ss_pred cCEEEEEEEeCCCEEEEEeC
Q 005254 579 SSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~ 598 (706)
..|..++|+.+|..||+++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 78999999999999999875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=189.25 Aligned_cols=249 Identities=25% Similarity=0.414 Sum_probs=200.2
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---eEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKV 468 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i 468 (706)
..|.+.|.... ..--+++ |++++.|++|+|+..++. +.+..+.+|.++|..++|.. .-..+|++++.||.|.|
T Consensus 8 t~H~D~IHda~--lDyygkr-lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQ--LDYYGKR-LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhh--hhhhcce-eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 34666555554 3444666 999999999999998764 56778999999999999965 33349999999999999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc---cEEEEEeecCCcEEEEE
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRGIWSVE 543 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~ 543 (706)
|.-.++ ..........|...|++++|.|. |-.|++++.||.|.|.++++. ........|.-.|++++
T Consensus 85 Wke~~g--------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 85 WKEENG--------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EecCCC--------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 997765 23345556779999999999994 679999999999999988754 23344567999999999
Q ss_pred EccC---C-----------CEEEEecCCCcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCC----CEEEEEeCCCCEE
Q 005254 544 FSPV---D-----------QVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVK 603 (706)
Q Consensus 544 ~s~~---~-----------~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~ 603 (706)
|.|. | +.|++|+.|..|+||+..++ +.-+++.+|.+.|+.++|.|.- .+||+++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 9985 4 57999999999999998775 3445689999999999999964 4799999999999
Q ss_pred EEECCCC-e--EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 604 LWTVRTG-E--CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 604 iwd~~~~-~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
||..... + ....+......+..+.||..|+.|+.++.|+.+.+|+-+..
T Consensus 237 Iwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 237 IWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9986521 1 12233456788999999999999999999999999986543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=204.89 Aligned_cols=290 Identities=19% Similarity=0.236 Sum_probs=212.7
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
+..+++++.|+.|.+||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3568889999999999999999999888654 46789999999977 5667789999999999988877765443 5678
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCc
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~ 229 (706)
+|+|+++. ++++++.++.|++||+.+++.+..+.. ...+.+++|+|+|++++++..++ .+.+||..+++......
T Consensus 79 ~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-- 154 (300)
T TIGR03866 79 ALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-- 154 (300)
T ss_pred EECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--
Confidence 99998764 344556789999999998887777653 23468899999999999887664 45556654332111000
Q ss_pred ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeE
Q 005254 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 309 (706)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (300)
T TIGR03866 155 -------------------------------------------------------------------------------- 154 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee
Q 005254 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389 (706)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~ 389 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (300)
T TIGR03866 155 -------------------------------------------------------------------------------- 154 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-------cCeEEEEEecCCCeEEEEecC
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-------GAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.. ....++. +.++++.+++++..++.+.+||+.+++.+..+..+. .....++|+|+++..+++.+.
T Consensus 155 ----~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 155 ----VD-QRPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred ----cC-CCccEEE--ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence 00 0011223 677787755666679999999999988776654221 123468899999855566666
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
++.+.+||....+ ..... .+...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..++.. ...+.
T Consensus 228 ~~~i~v~d~~~~~----------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 228 ANRVAVVDAKTYE----------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWG 295 (300)
T ss_pred CCeEEEEECCCCc----------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccce
Confidence 7789999987542 22212 244578899999999999886 46899999999999999988754 55688
Q ss_pred EEEcc
Q 005254 542 VEFSP 546 (706)
Q Consensus 542 ~~~s~ 546 (706)
++++|
T Consensus 296 ~~~~~ 300 (300)
T TIGR03866 296 VVVRP 300 (300)
T ss_pred eEeCC
Confidence 88875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=202.75 Aligned_cols=252 Identities=25% Similarity=0.444 Sum_probs=212.0
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce----------eeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS----------CSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
.....|.+.|..+.+.|.+..++++.+..+.++|||..... +...+.+|...-.++. +.+.....+++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~gls--Wn~~~~g~Lls 195 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLS--WNRQQEGTLLS 195 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccc--cccccceeEee
Confidence 34456889999999999999999999999999999986432 2236778888666666 77777777999
Q ss_pred eeCCCcEEEEeCCCce-------EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 417 GSKDNSVRLWDSESRC-------CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
++.|+.|++||+.... ....+.+|...|..++|++....++.+++.|+.+.|||++.. ..+....
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------~~~~~~~ 267 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------TSKPSHS 267 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------CCCCccc
Confidence 9999999999987543 345678999999999999988889999999999999999863 1125566
Q ss_pred EeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcC
Q 005254 490 VAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSIS 566 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 566 (706)
..+|..++.|++|+| ++..||+|+.|++|++||+++. +++..+.+|...|..+.|||.. ..||+++.|+.+.|||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 778999999999999 6778899999999999999876 5677899999999999999964 678999999999999995
Q ss_pred CC--------------ceEEEEeecccCEEEEEEEeCCCE-EEEEeCCCCEEEEECC
Q 005254 567 DG--------------SCLKTFEGHTSSVLRASFLTRGAQ-IVSCGADGLVKLWTVR 608 (706)
Q Consensus 567 ~~--------------~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~ 608 (706)
.- +++..-.||...|..+.|.|+..+ ++++++|+.+.||...
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 42 345666789999999999998876 6788999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=204.08 Aligned_cols=475 Identities=13% Similarity=0.153 Sum_probs=312.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
.++|.|||.-|+.+.++.+.+||+..|.++.++++|...|.|++|+.||+.+|+|+.|..|.+|+-+-.. +..+. |..
T Consensus 17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS-H~D 94 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS-HND 94 (1081)
T ss_pred eeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec-cCC
Confidence 4999999999999999999999999999999999999999999999999999999999999999864322 22233 899
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.|.|+.|+|-...|++++- ...-+|+.+.....+ . ....++.+++|..||+. ++.|-.+|+|.+-+- +++....
T Consensus 95 ~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqy--lalG~~nGTIsiRNk-~gEek~~ 168 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQY--LALGMFNGTISIRNK-NGEEKVK 168 (1081)
T ss_pred eeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEeeecCCCcE--EEEeccCceEEeecC-CCCcceE
Confidence 9999999999999999875 446789876544332 1 24567889999998886 999999999999875 3443333
Q ss_pred e---ecccceEEEEEEecCC-----CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 184 L---DKHFSRVTSMAITSDG-----STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 184 ~---~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
+ .+...+|.+++|+|.. ..+++..-..++.++.+.....-+.........++...++|.
T Consensus 169 I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE------------- 235 (1081)
T KOG1538|consen 169 IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE------------- 235 (1081)
T ss_pred EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc-------------
Confidence 3 3467899999999863 367788888888888887655554555555667777777776
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
+++.||.++.+.++..+.-.+-.. .+...-+..+...|+++.+++++.||++..|++..
T Consensus 236 ----------y~LiGGsdk~L~~fTR~GvrLGTv-----------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 236 ----------YILLGGSDKQLSLFTRDGVRLGTV-----------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ----------EEEEccCCCceEEEeecCeEEeec-----------cccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 789999999999998665433221 22345678889999999999999999999998765
Q ss_pred cccccee------------eEEeeEecccCce------eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 336 VPEKKME------------LILSKRLVGYNEE------ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 336 ~~~~~~~------------~~~~~~~~~~~~~------v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
....... ........+.... |..++. -.+.+++--. ..|.+|.+.+++....-..-..
T Consensus 295 STVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai---YrnrLAVQLp-eki~iYel~se~~~~mhY~v~e 370 (1081)
T KOG1538|consen 295 STVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI---YRNRLAVQLP-EKILIYELYSEDLSDMHYRVKE 370 (1081)
T ss_pred hHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh---hhhhheeccc-ceEEEEeccccccccchhHHHH
Confidence 4311000 0000000000000 111111 1223443333 4677777765543321111000
Q ss_pred e-EEEeeee-eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecC
Q 005254 398 I-VLCLDTC-ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 398 ~-i~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
. ...+++. ..-.++. ++ -+.+..+..+|...-+...- .-.+-|.-+.+ .|-++.-|+.|..+|.|.-.-+++
T Consensus 371 kI~kkf~cSLlVVc~~H-iV-lCqekrLqClDF~Gvk~ReW--~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN 446 (1081)
T KOG1538|consen 371 KIIKKFECSLLVVCANH-IV-LCQEKRLQCLDFSGVKEREW--QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDN 446 (1081)
T ss_pred HHHhhccceEEEEEcCe-EE-EEcccceeeecccchhhhhh--hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecC
Confidence 0 0000000 0011222 22 23456677777653211000 00111111111 245566788888888765444443
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
. ....+......|.|+.++.+.+.||+..+.++..++|+.+++.+.+- ..+.+++|+....-+++
T Consensus 447 ~-----------~PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QE----pg~nSV~wNT~~E~Mlc 511 (1081)
T KOG1538|consen 447 L-----------FPILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQE----PGANSVAWNTQCEDMLC 511 (1081)
T ss_pred C-----------chhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeec----CCCceEEeeccccceEE
Confidence 3 22233445567999999999999999999999999999999887653 44678899875443333
Q ss_pred ecCCCcEEEE
Q 005254 554 ASGDKTIKIW 563 (706)
Q Consensus 554 ~~~dg~i~iw 563 (706)
-+..|.+.|-
T Consensus 512 fT~~g~L~VR 521 (1081)
T KOG1538|consen 512 FTGGGYLNVR 521 (1081)
T ss_pred EecCCceEEE
Confidence 3333555543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=183.85 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=126.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC---eEEEEeeccCCCeEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL---KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
.-..|...|..+...-.|++||+++.|++|+|+.+.+. .++.++.+|.++|..++|.. -|..||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34578999999999999999999999999999999754 57889999999999999977 89999999999999999
Q ss_pred ECCCCeE--EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceEEEEEEecC
Q 005254 130 DVDGGFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRVTSMAITSD 199 (706)
Q Consensus 130 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~ 199 (706)
.-++|+- ......|...|++++|.|.+-..+|++++.||.|.|.+.++. ........|.-.|++++|.|.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 9988853 345567999999999999999999999999999999987654 223345679999999999986
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=183.30 Aligned_cols=298 Identities=22% Similarity=0.300 Sum_probs=224.9
Q ss_pred eecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCe------EE----E-----EeeccCCCeEEEEECC-CCCEE
Q 005254 55 TIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLK------CL----R-----SWKGHDGPAIGMACHP-SGGLL 117 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~------~~----~-----~~~~~~~~v~~~~~s~-~~~~l 117 (706)
....|.+.|+++.+.+ .|+|+++|+.||.|.+||+++.. ++ . .-.+|...|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999998 68999999999999999997543 11 1 1235888999999999 66788
Q ss_pred EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEE
Q 005254 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI 196 (706)
Q Consensus 118 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 196 (706)
.+++-|.+++|||..+.+....|+ ..+.|..-+++|-.. ..++++|..+-.|++-|+.+|...+++.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888999999999999988887776 678888889988654 667888999999999999999999999999999999999
Q ss_pred ecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 197 TSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 197 ~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
+|... .|++|+.||.|++||++...
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRras------------------------------------------------------ 222 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRAS------------------------------------------------------ 222 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeeccc------------------------------------------------------
Confidence 99877 46788999999999986421
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
T Consensus 223 -------------------------------------------------------------------------------- 222 (397)
T KOG4283|consen 223 -------------------------------------------------------------------------------- 222 (397)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee---eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
|.+++.|..+.+. .+.-..|.+.+..++ +.+++.. +++.+.|..+++|+..+|+
T Consensus 223 --------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla--~tSd~~~-l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 223 --------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLA--WTSDARY-LASCGTDDRIRVWNMESGR 279 (397)
T ss_pred --------------------ceeEEeecccCccCccccccccccceeeeee--ecccchh-hhhccCccceEEeecccCc
Confidence 1111222211111 112335777888887 7788887 8899999999999998875
Q ss_pred EEEEEeC---CCc----CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 433 CVGVGTG---HMG----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 433 ~~~~~~~---~~~----~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
......+ |.. .+. +. +-+.. .++---.++.+.++.+-.+. ....+..|...+.|.++.|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs----------~ir~l~~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGS----------FVRRLSTHLKRINCAAYRPD 346 (397)
T ss_pred ccccccccccccccccceEE-Ee-ecccc-eEEEEecCCeEEEEEccCce----------EEEeeecccceeeEEeecCc
Confidence 4322110 111 111 22 22222 34444455778888776554 66777788888999999999
Q ss_pred CCEEEEeeCCCcEEEEeC
Q 005254 506 DSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~ 523 (706)
-+...+|..|+.|..|-.
T Consensus 347 fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 347 FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhhccccCCccccccc
Confidence 999999999999999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=203.29 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=208.7
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
..+++++.++.+.+||+.+++....+..+.. +.++. +.++++.++++++.++.+++||..+++....+..+. .+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccE
Confidence 4678888899999999999988888876654 44565 788888866788889999999999988877665543 3567
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-cEEEEeCCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-TACVWRLPD 525 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~ 525 (706)
++++|+++.+++++..++.+++||+.... ....+ .....+.+++++|+|++++++..++ .+.+||..+
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----------~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRK----------VLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCe----------EEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 89999988555666778999999997542 12222 2234468899999999999988765 467789988
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeeccc-------CEEEEEEEeCCCEEEE-E
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTS-------SVLRASFLTRGAQIVS-C 596 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~-~ 596 (706)
++...... ....+..++|+|++++|+++ ..++.|++||+.+++.+..+..+.. ....++|+|+++++++ .
T Consensus 147 ~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 147 YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 87765544 23456789999999988654 4689999999999988776653211 2346889999998655 3
Q ss_pred eCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCchhHH
Q 005254 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-GSDALVNLWHDSTAAER 655 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~ 655 (706)
+.++.+.+||+.+++.+..+. +...+.+++|+|++++|+++ +.+|.|.+||+.+++..
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 456789999999998876653 34578999999999999876 46899999999987643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=203.49 Aligned_cols=279 Identities=18% Similarity=0.275 Sum_probs=227.2
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeC--CcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
|.+-|..+.. +...+++.+++. |.|++||+.... .+..+.. ....+.... ..++++. |++|+.-.++.||
T Consensus 418 HGEvVcAvtI-S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSck--L~pdgrt-LivGGeastlsiW 492 (705)
T KOG0639|consen 418 HGEVVCAVTI-SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCK--LLPDGRT-LIVGGEASTLSIW 492 (705)
T ss_pred cCcEEEEEEe-cCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeE--ecCCCce-EEeccccceeeee
Confidence 4444444444 446677777766 899999997542 2222322 334455554 7788888 8889999999999
Q ss_pred eCCCceEEE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 427 DSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 427 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
|+....... .+........+++.+||.+ +.+++..||.|.|||+.+.. ....+.+|...+.||.+++
T Consensus 493 DLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~----------~VrqfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT----------LVRQFQGHTDGASCIDISK 561 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce----------eeecccCCCCCceeEEecC
Confidence 998765433 3334445677899999977 89999999999999998654 7778899999999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRA 584 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 584 (706)
||..|.+|+-|++|+-||+++++.+.... ....|.++..+|++.+|+.|-.++.+.|.... +.....+.-|.+.|.++
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEE
Confidence 99999999999999999999988776544 56789999999999999999999999998864 44455666699999999
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.|++.|+++++.+.|..+..|...-|..+...+. .+.|.++.+|.|+++++||+.|....||.+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999999999999998988877654 678999999999999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-22 Score=192.58 Aligned_cols=250 Identities=19% Similarity=0.279 Sum_probs=212.6
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSS 78 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~ 78 (706)
|....++.+|.....++. |++.|+|.+|.+++.+ .|++|+..+. +...++..+...|.+++.. +.+++++
T Consensus 1 M~~~r~klRyaht~G~t~------i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~ 72 (933)
T KOG1274|consen 1 MSSTRLKLRYAHTGGLTL------ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTG 72 (933)
T ss_pred CCcccccchhhccCceEE------EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEe
Confidence 677778888877766555 9999999999888776 8999997666 4445555577888888766 4489999
Q ss_pred eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 79 GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
+.+++|.+|...+++.-..+....-++++++|+.+|+++|.|+.|-.|++-+..+......+++|.++|.++.|+|.++.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 99999999999988766666666689999999999999999999999999999999999999999999999999997765
Q ss_pred eEEEEEecCCeEEEEECCCCeeEEEeec--------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-
Q 005254 159 SLLFSGSDDATVRVWDLLAKKCVATLDK--------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY- 229 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~- 229 (706)
||+.+-||.|++||++++.+..++.+ ....+..++|+|+|..++..+.|+.|++|+..+.+....+...
T Consensus 153 --LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~ 230 (933)
T KOG1274|consen 153 --LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL 230 (933)
T ss_pred --EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence 99999999999999999987776643 1456788999999888998999999999999998877766543
Q ss_pred --ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 230 --EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
..+..+.|+|.|. ++++++.+|.|.+||.++
T Consensus 231 ~ss~~~~~~wsPnG~-----------------------YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGK-----------------------YIAASTLDGQILVWNVDT 263 (933)
T ss_pred cccceEEEEEcCCCc-----------------------EEeeeccCCcEEEEeccc
Confidence 3477888999987 899999999999999985
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-24 Score=197.48 Aligned_cols=279 Identities=20% Similarity=0.298 Sum_probs=208.2
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
.|..++|-|||..|+.+..+ .+.+||...|.++.++++|...|.+++|+.||+++|+|+.|..|.+|+..-.-.++ +
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y- 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence 89999999999888877644 79999999999999999999999999999999999999999999999975433332 2
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.|...|.|+.|+|-... +++++-+. .-+|..+.....+ . .....+.+++|..||++++.|-.+|+|.+=+-.. +
T Consensus 91 SH~D~IQCMsFNP~~h~--LasCsLsd-FglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-E 164 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQ--LASCSLSD-FGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-E 164 (1081)
T ss_pred ccCCeeeEeecCchHHH--hhhcchhh-ccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-C
Confidence 49999999999998766 77776543 7789875544322 1 2345788999999999999999999988764221 1
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
...
T Consensus 165 ek~----------------------------------------------------------------------------- 167 (1081)
T KOG1538|consen 165 EKV----------------------------------------------------------------------------- 167 (1081)
T ss_pred cce-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
...+..+.+++|.+++|+|..+
T Consensus 168 -------------------------------------------~I~Rpgg~Nspiwsi~~~p~sg--------------- 189 (1081)
T KOG1538|consen 168 -------------------------------------------KIERPGGSNSPIWSICWNPSSG--------------- 189 (1081)
T ss_pred -------------------------------------------EEeCCCCCCCCceEEEecCCCC---------------
Confidence 1122234456677777766322
Q ss_pred eCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 382 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
+.....+++.....++.++.+. |+.+..-+.-.-...++.+.++|. +++.|+
T Consensus 190 --------------------------~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE-y~LiGG 241 (1081)
T KOG1538|consen 190 --------------------------EGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE-YILLGG 241 (1081)
T ss_pred --------------------------CCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc-EEEEcc
Confidence 0011125555556666666554 344443344455667899999988 899999
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
.|+.+.+|.-... ...+.......|..++..|++++++.|+.||+|..|++
T Consensus 242 sdk~L~~fTR~Gv-----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGV-----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred CCCceEEEeecCe-----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999976543 44455557788999999999999999999999999986
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=179.06 Aligned_cols=254 Identities=19% Similarity=0.280 Sum_probs=197.2
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
+|.-.|.++.|.|-+...+.+++-|..+++||.++.+....+.- .+.|..-++....-...++++|..+-.|++-|+.+
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 45566778888888999999999999999999998877665543 23344433223334455689999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC-----CCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD-----DAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|..-..+.+|...|.++.|+|.....|++|+.||.|++||++.... ........+....-..|.+.+..++|+.+
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd 257 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD 257 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence 9999999999999999999999998999999999999999986521 11111111122345578889999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEee---cCC----cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKR----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
+.++++.+.|..+++|+..+|+....-.+ |+. .+. +. +-+...++---.++.+.++++-++..++.+..|.
T Consensus 258 ~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~ 335 (397)
T KOG4283|consen 258 ARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL 335 (397)
T ss_pred chhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc
Confidence 99999999999999999988754332111 211 111 22 3334444444566889999999999999999999
Q ss_pred cCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 579 SSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..+.+..+-|+-+.+.+|..|+.|..|-.
T Consensus 336 k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 336 KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceeeEEeecCchhhhhccccCCccccccc
Confidence 99999999999999999999999999976
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-26 Score=212.21 Aligned_cols=235 Identities=20% Similarity=0.311 Sum_probs=196.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC---ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+......++++++..|.|.+||+.. .+.+..+..|...+.++.|++...++|++|++||.|++||++..+
T Consensus 95 W~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~------- 167 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK------- 167 (839)
T ss_pred cccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-------
Confidence 4555666799999999999999987 566678889999999999999999999999999999999998765
Q ss_pred ccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
....+.+....|..++|+| .+..++++.+.|.+++||++.. +....+..|.++|.++.|+|++.+||+|+.|++|
T Consensus 168 ---S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 168 ---SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ---ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 4555666788899999999 6789999999999999999865 5566788999999999999999999999999999
Q ss_pred EEEEcCCCce--EEEEeecccCEEEEEEEeCCCE-EEEEe--CCCCEEEEECCCC-eEEEEeccCCCcEEEEEEcC-CCC
Q 005254 561 KIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQ-IVSCG--ADGLVKLWTVRTG-ECIATYDKHEDKIWALAVGK-KTE 633 (706)
Q Consensus 561 ~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~ 633 (706)
+|||+.+++. +.++. -..++.++.|-|..++ |++++ .|..|+|||++.. -+..++..|...++.++|.. |..
T Consensus 245 kiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 9999976654 33333 3468999999998776 45544 4779999999765 46788889999999999955 445
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
.+.+++.||++..-.+..
T Consensus 324 ~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeEeecCccHHHHhhhhc
Confidence 788999999886544443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-25 Score=199.61 Aligned_cols=313 Identities=21% Similarity=0.283 Sum_probs=231.8
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC--EEEEecCCCcEEEEEC
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG--LLATAGADRKVLVWDV 131 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~vw~~ 131 (706)
..+.||++.|.||...|.|.+||+|+.||+|+||.+.+|++++++. ..+.|.|++|+|.+. .||++-. ..+.|-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCc
Confidence 4568999999999999999999999999999999999999999988 567999999999765 4555544 33777666
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE----ecCCeEEEEECCCCe----eEEEeecccceEEEEEEecCCCEE
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----SDDATVRVWDLLAKK----CVATLDKHFSRVTSMAITSDGSTL 203 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l 203 (706)
.-|..+.... . . . +++++ ..++.+..|.-.... -++..-.|...|..+.|+..|.+|
T Consensus 472 ~~G~~~e~~~--t---~--------e--ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 472 IFGDRLEVGP--T---K--------E--LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred cccchhhhcc--h---h--------h--hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 5453221110 0 0 0 01111 235577888654211 133445688999999999999999
Q ss_pred EEEeCCC---EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 204 ISAGRDK---VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 204 ~~~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
++...++ .|.+.++..
T Consensus 537 atV~~~~~~~~VliHQLSK------------------------------------------------------------- 555 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSK------------------------------------------------------------- 555 (733)
T ss_pred EEeccCCCcceEEEEeccc-------------------------------------------------------------
Confidence 9987543 344444322
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
T Consensus 556 -------------------------------------------------------------------------------- 555 (733)
T KOG0650|consen 556 -------------------------------------------------------------------------------- 555 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 440 (706)
......+....+.+.++. |.|.... +++++ ...|++||+.....+..+...
T Consensus 556 -------------------------~~sQ~PF~kskG~vq~v~--FHPs~p~-lfVaT-q~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 556 -------------------------RKSQSPFRKSKGLVQRVK--FHPSKPY-LFVAT-QRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred -------------------------ccccCchhhcCCceeEEE--ecCCCce-EEEEe-ccceEEEehhHHHHHHHHhcC
Confidence 222222333334444454 6666666 44443 468999999998888888778
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
...|..++++|.|. -|+.++.|+.+..+|++-.. +....+..|...+++++|++.-.++++|+.||++.|
T Consensus 607 ~kwiS~msihp~GD-nli~gs~d~k~~WfDldlss---------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 607 SKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSS---------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred CeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCc---------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 88999999999988 68889999999999998543 255567779999999999999999999999999999
Q ss_pred EeC------CCc---cEEEEEeecCCc----EEEEEEccCCCEEEEecCCCcEEEE
Q 005254 521 WRL------PDL---VSVVTFRGHKRG----IWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 521 ~d~------~~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
|.- ... -++..+++|... |....|+|...+|++++.||+|++|
T Consensus 677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 842 221 345677788765 8999999999999999999999998
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=197.40 Aligned_cols=228 Identities=18% Similarity=0.276 Sum_probs=190.0
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+++.|++|+...++.+||+.................|.+...+|+.+. .++++.||.|.|||+.+...++.+++|...+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce-eeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 667777777778888899876655444333343333433337788877 8888999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.||.++++|. .|-+|+-|++|+.||++.+.. .........|.++..+|++.+|++|-.++.+.+....
T Consensus 555 scIdis~dGt-klWTGGlDntvRcWDlregrq-----------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 555 SCIDISKDGT-KLWTGGLDNTVRCWDLREGRQ-----------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eeEEecCCCc-eeecCCCccceeehhhhhhhh-----------hhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999988 799999999999999987632 1122345679999999999999999999999988864
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
+.....+.-|...|.++.|.+.|+++++.+.|..+..|...-|..+...+ ..+.|.++.+|.|++|+++|+.|....|
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 44555667799999999999999999999999999999998888887776 5679999999999999999999988888
Q ss_pred EEC
Q 005254 605 WTV 607 (706)
Q Consensus 605 wd~ 607 (706)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=192.07 Aligned_cols=286 Identities=17% Similarity=0.290 Sum_probs=218.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~ 136 (706)
.++|+++.|+|....|.+|+.|++++||.+. +...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999874 4457777777789999999999999 899999999999999998875
Q ss_pred EE--EeeCCC-CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 137 TH--YFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 137 ~~--~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.+ ...++. ..+.....+|+++. ++..+..|.|.+....+++.+.+++ -.+.|..++|+.+++.|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~f--ia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNF--IAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCe--EEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 43 233343 34677888998875 9999999999999999999998886 458899999999999999999999999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+||++...++.......
T Consensus 370 v~nl~~~~~~~rf~D~G--------------------------------------------------------------- 386 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDG--------------------------------------------------------------- 386 (514)
T ss_pred EEecCCcceEEEEeecC---------------------------------------------------------------
Confidence 99998765443322111
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 387 -------------------------------------------------------------------------------- 386 (514)
T KOG2055|consen 387 -------------------------------------------------------------------------------- 386 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC------ceEEEEEeCCCcCeEEE
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES------RCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~~ 447 (706)
.+.....|.+.++.+ +|+|+..|.|.|||.++ .+++..+..-...|+++
T Consensus 387 ------------------------~v~gts~~~S~ng~y-lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 387 ------------------------SVHGTSLCISLNGSY-LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred ------------------------ccceeeeeecCCCce-EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 011111123444443 77777777777777543 34555556667789999
Q ss_pred EEecCCCeEEEEecC--CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 448 AFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.|+++.+ +|+.++. +..+++-.+...+....-| .....-+.++|++|||.+.++|.|..+|.+.+|.+.
T Consensus 442 ~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP-------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 442 QFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFP-------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeCcchh-hhhhhhhccccceEEEeccceeeeccCC-------CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999988 7766654 6788988887643211111 112233568999999999999999999999999874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-22 Score=193.77 Aligned_cols=520 Identities=15% Similarity=0.157 Sum_probs=329.3
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-eEEEEEecCCeEEEEECCCCeeEEEe
Q 005254 106 IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSDDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 184 (706)
..-.||+|+++++... +..|.||...++.++..+..|..++..+.+.|.... .++++.+.+|.|++||...+..++++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3457899999888765 578999999999999999999999999999987654 67889999999999999999999888
Q ss_pred ecccceEEEEEEec----CCCEEEEEeCCCEEE-EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 185 DKHFSRVTSMAITS----DGSTLISAGRDKVVN-LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 185 ~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
..+ .++..+.+.| ....+.....+..+. ....+........... -.....+. +.... ..-...
T Consensus 99 ~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~-----t~~~~~~d----~~~~~--~~~~~I 166 (792)
T KOG1963|consen 99 DNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLA-----TFDSAKGD----FLKEH--QEPKSI 166 (792)
T ss_pred ecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEee-----eccccchh----hhhhh--cCCccE
Confidence 644 3444444432 111121222221111 1111110000000000 00000000 00000 000000
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
.......+.....+..+.+|+...+. ....... ....+...++...++|.++.++++..+|++.+|.......
T Consensus 167 ~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~-----~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~- 239 (792)
T KOG1963|consen 167 VDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRD-----ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD- 239 (792)
T ss_pred EEcCCceEEEEEEeeeEEEEEecccc-eeeccch-----hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-
Confidence 11122245555566677788777653 1111111 1112223378899999999999999999999998876422
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
.......+.-|..+|.++.|++ ++.+|.+|+..+.+.+|.+.+++ .+.++.-.++|..+. ++|++.. .+....
T Consensus 240 --~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~--vS~ds~~-~sl~~~ 312 (792)
T KOG1963|consen 240 --DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIV--VSPDSDL-YSLVLE 312 (792)
T ss_pred --ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEE--EcCCCCe-EEEEec
Confidence 2223355667889999999997 88999999999999999999999 667777888888887 7788877 777788
Q ss_pred CCcEEEEeCCCceEEEEEeC-----------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 420 DNSVRLWDSESRCCVGVGTG-----------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
|..|.+....+......+.+ ..+-.+.++++|.-+ .++-.+..|.|++||+.+......-........
T Consensus 313 DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~ 391 (792)
T KOG1963|consen 313 DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS 391 (792)
T ss_pred CceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeeccc
Confidence 99999988765544333222 244567788888433 688888999999999976643211000000000
Q ss_pred EEe-ecCcceEEEEEcCCCCEEEEee--------CCC--cEEEEeCCCccEEEE-----EeecCCcEEEEEEccC--CCE
Q 005254 489 VVA-AHGKDINSLAVAPNDSLVCTGS--------QDR--TACVWRLPDLVSVVT-----FRGHKRGIWSVEFSPV--DQV 550 (706)
Q Consensus 489 ~~~-~~~~~i~~~~~s~~~~~l~~~~--------~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~s~~--~~~ 550 (706)
.-. .+.-.++.++.+..|.++++.- .|| .+++|-......-.. ..+|...+...++.+. ...
T Consensus 392 ~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 392 DGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVR 471 (792)
T ss_pred CCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccce
Confidence 000 2233577888888899999864 233 467787654433222 2357777777666553 237
Q ss_pred EEEecCCCcEEEEEcCCC----------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC-CeEEEEeccC
Q 005254 551 VITASGDKTIKIWSISDG----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKH 619 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~ 619 (706)
.++++.||.++||-+... .|...-..|..++++++|+.||..|+ .+.|+.|.+||..+ .+.......-
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~ 550 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSR 550 (792)
T ss_pred eEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccccc
Confidence 999999999999998322 23222223788999999999996555 55778999999988 4433333322
Q ss_pred CCcEEEEEEcC----CCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 620 EDKIWALAVGK----KTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 620 ~~~v~~~~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++..+.+.. ++ .+.....+.+.+|++-+.....
T Consensus 551 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 551 NWPIAELLFTAQTQNDG--ALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ccchHhHhhhccccccc--ceeeccCceEehHhhhhhheec
Confidence 33333333322 23 2334456789999988776544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=208.75 Aligned_cols=243 Identities=20% Similarity=0.302 Sum_probs=207.4
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
..|....+.+. +.++++. +++++.||.|++|+.... +.-..+..+...|.+++.... .+++++.+++|.+|.+
T Consensus 10 yaht~G~t~i~--~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLIC--YDPDGEF-ICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEE--EcCCCCE-EEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeC
Confidence 35666666665 8888986 999999999999987765 333333336777777776655 7999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
..+. ....+.....++++++++.+|+++|.|+.|-.|++.+..+......+++|..+|.++.|+|.+++|
T Consensus 84 ps~~----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fL 153 (933)
T KOG1274|consen 84 PSGE----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFL 153 (933)
T ss_pred CCCC----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEE
Confidence 8764 333445566789999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEEcCCCceEEEEeec--------ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--cCCC
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFEGH--------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--KHED 621 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~ 621 (706)
|+.+.||.|++||+.++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..+++....+. .+..
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 99999999999999998877666531 3457789999998899999999999999999999888876 3455
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 622 KIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 622 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+..++|||+|+|||+++.||.|.|||+++
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 699999999999999999999999999997
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-27 Score=217.77 Aligned_cols=251 Identities=24% Similarity=0.432 Sum_probs=220.9
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
......+++|+.. .+..|...+.++. . -.....+++|+.|..+-+|.......+..+.+|..+|.++.|++
T Consensus 10 ~~~~t~Lr~~~~~------~~~~hsaav~~lk--~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 10 TKRATKLRVWDTR------EFVAHSAAVGCLK--I-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred eeeeeccccccch------hhhhhhhhhceee--e-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc
Confidence 3333455566654 3345666666665 3 23334499999999999999988888888999999999999999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
... +|++|+.+|+|++||+.... ....+.+|...+.++.|+|-+.+.+.|+.|..+.+||.+...+...
T Consensus 81 ~E~-LlaagsasgtiK~wDleeAk----------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEAK----------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred chh-hhcccccCCceeeeehhhhh----------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 865 89999999999999998654 5567888999999999999999999999999999999998889999
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+.+|...|..+.|+|+|++++.+++|..++|||+..|+...+|..|...+..+.|+|..-.|++|+.|+++++||+++-+
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 612 CIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 612 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+........+|.+++|+|+++.+.+|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9999988899999999999999988876654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=200.79 Aligned_cols=291 Identities=22% Similarity=0.300 Sum_probs=222.6
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCceee------EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 363 GEEEQYLAVATNIEQVQVYDLSSMSCS------YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 363 ~~~~~~l~~~~~~~~i~~~d~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
+....+|+++..+|.|.++|....... .....|...|..+. +.| ++.+|++++.|.++++||++..+++..
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAP-GESLLVSASGDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec--cCC-CceeEEEccCCceeeeeeeccceeecc
Confidence 457789999999999999998765443 56678999999998 666 777799999999999999999988877
Q ss_pred --EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------------ccc--ccceeEEEeecCcce
Q 005254 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------------QPM--NLKAKAVVAAHGKDI 497 (706)
Q Consensus 437 --~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~i 497 (706)
+.+|.+.|.+++|.+..+..+++|+.||.|.|||++....... .+. ..+.......+...|
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 8899999999999999999999999999999999975531110 000 011111223344445
Q ss_pred EE---EEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEE--------Eeec---CCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 498 NS---LAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVT--------FRGH---KRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 498 ~~---~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
.+ +.+..|...||+++. |+.|++||++....... +..| ...++++.....|.+|++.+.|+.|+.
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 55 555568888998887 99999999987643322 2223 346788888888999988889999999
Q ss_pred EEcCCCc--eEEEEeecccC--EEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-EEEEeccCCCcEEEEEEcCCC-CEEE
Q 005254 563 WSISDGS--CLKTFEGHTSS--VLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CIATYDKHEDKIWALAVGKKT-EMFA 636 (706)
Q Consensus 563 wd~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~ 636 (706)
|++.+.. ++..+.++... -..-..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|.. .-++
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 9997643 34444443221 1233668999999999999999999998875 455667999999999998753 3578
Q ss_pred EEeCCCcEEEEECCchhHHH
Q 005254 637 TGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 637 ~~~~dg~i~vw~~~~~~~~~ 656 (706)
|++.|..+++|++..+.+..
T Consensus 378 TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eeccCcceEEEeccCchhhc
Confidence 88999999999998777655
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=189.33 Aligned_cols=285 Identities=12% Similarity=0.132 Sum_probs=231.3
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC--ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
...+.|.++.|.| ....+++++.++.+++|.+.. ...+..+.-...++.+.. +.|++...+++++....++.||+
T Consensus 211 ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~--f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 211 PSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAE--FAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceee--ecCCCceEEEecccceEEEEeec
Confidence 4567899999987 778999999999999998764 344555666677787777 88999966999999999999999
Q ss_pred CCceEEEEEe--CC-CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ESRCCVGVGT--GH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~~~~~~~~~--~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
.+.+....-. ++ ...+....++++++ +++..+..|.|.+....+.. ........+.|..++|+.|
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-----------li~s~KieG~v~~~~fsSd 355 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-----------LITSFKIEGVVSDFTFSSD 355 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-----------hhheeeeccEEeeEEEecC
Confidence 9887655432 22 33566788899987 99999999999998876652 2222334567899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCC-cEEEEEEccCCCEEEEecCCCcEEEEEcCC------CceEEEEeecc
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-GIWSVEFSPVDQVVITASGDKTIKIWSISD------GSCLKTFEGHT 578 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~ 578 (706)
++.|++.+.+|.|.+||++....+..+....+ .-++++.|+++.+||+|+..|.|.|||.++ .+++..+..-.
T Consensus 356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt 435 (514)
T KOG2055|consen 356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT 435 (514)
T ss_pred CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence 99999999999999999999988888774222 236788889999999999999999999653 46677777777
Q ss_pred cCEEEEEEEeCCCEEEEEeC--CCCEEEEECCCCeEEEEeccC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 579 SSVLRASFLTRGAQIVSCGA--DGLVKLWTVRTGECIATYDKH---EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..|+++.|++|.+.||.++. +..+++-.+.+......++.. -+.|+||+|||.+.+|+.|..+|.+.+|++.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 89999999999999988775 568999998887777666643 3568999999999999999999999999874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=197.04 Aligned_cols=216 Identities=17% Similarity=0.222 Sum_probs=174.0
Q ss_pred CCcEEEEeCCCce----EEEEEeCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 420 DNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 420 dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
++.+..|.-.... -+...-.|...|..+.|+..|. +|++... ...|.|+++.... ....+..
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~----------sQ~PF~k 564 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK----------SQSPFRK 564 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc----------ccCchhh
Confidence 3455666544211 1334456889999999999998 6666644 4578888887543 2223334
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL 571 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~ 571 (706)
..+.+.++.|+|...+|++++. ..|+|||+...+.+..+......|..++.+|.|..|+.++.|+.+..+|+.-. ++.
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh
Confidence 5677899999999999998875 67999999998888888878888999999999999999999999999999754 567
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC------CC---eEEEEeccCCCc----EEEEEEcCCCCEEEEE
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR------TG---ECIATYDKHEDK----IWALAVGKKTEMFATG 638 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~----v~~~~~s~~~~~l~~~ 638 (706)
+++..|...+++++|++.-.++++|+.||++.||.-. .. -++..+++|... |....|+|...+|+++
T Consensus 644 k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsA 723 (733)
T KOG0650|consen 644 KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSA 723 (733)
T ss_pred HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEec
Confidence 8888899999999999999999999999999998532 11 256777888765 8899999999999999
Q ss_pred eCCCcEEEE
Q 005254 639 GSDALVNLW 647 (706)
Q Consensus 639 ~~dg~i~vw 647 (706)
|.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=178.75 Aligned_cols=289 Identities=21% Similarity=0.292 Sum_probs=209.2
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
-.|+.|++.|.. |+.|+.||.|.|||+.+...-+.+.+|..+|++++||+||+.|++++.|..+.+||+..+.++..+
T Consensus 26 a~~~~Fs~~G~~--lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDY--LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcce--eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 789999999887 999999999999999999988899999999999999999999999999999999999999988887
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
....++....+.|...
T Consensus 104 rf~spv~~~q~hp~k~---------------------------------------------------------------- 119 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKR---------------------------------------------------------------- 119 (405)
T ss_pred EccCccceeeeccccC----------------------------------------------------------------
Confidence 7766666555554432
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
+..++.--+..-.+.++..+
T Consensus 120 ------------------------------------------------------------n~~va~~~~~sp~vi~~s~~ 139 (405)
T KOG1273|consen 120 ------------------------------------------------------------NKCVATIMEESPVVIDFSDP 139 (405)
T ss_pred ------------------------------------------------------------CeEEEEEecCCcEEEEecCC
Confidence 11111111111111111111
Q ss_pred eeeEeeeCCcceEEEee--eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-cCeEEEEEecCCCeEEEEecCC
Q 005254 387 SCSYVLAGHSEIVLCLD--TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d 463 (706)
..........+.....+ ..+.+.++. +++|...|.+.+++..+.+++..++... ..|..+.++..|+ +++.-+.|
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsD 217 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSD 217 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCE-EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCC
Confidence 11100000000000000 015666776 9999999999999999999998887666 7899999999988 89999999
Q ss_pred CeEEEEEecCCCCC---CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEeecC-Cc
Q 005254 464 HTIKVWSFDGLSDD---AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRGHK-RG 538 (706)
Q Consensus 464 ~~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~ 538 (706)
..|+.|++...... .+.....+... .-+...-.+++|+.+|.|++.++. ...++||.-..|.+++.+.+.. ..
T Consensus 218 RvIR~ye~~di~~~~r~~e~e~~~K~qD--vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~ 295 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVEPEHKLQD--VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE 295 (405)
T ss_pred ceEEEEehhhhcccCccCCcChhHHHHH--HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh
Confidence 99999998743211 00000000000 012233467899999999988774 3469999999999999999877 56
Q ss_pred EEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 539 IWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 539 v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
...+.|+|-...+++. ..|.+++|...
T Consensus 296 l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 296 LLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeecccccceeeeeec-cCCceEEEEee
Confidence 7889999988888887 77899999864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=172.96 Aligned_cols=256 Identities=19% Similarity=0.397 Sum_probs=200.6
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIK 467 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~ 467 (706)
.+|.+-+.++. +..-|++ +++++.|+++.|||... ..+....+.|.+.|..+.|.+ .-...+++++.|+++.
T Consensus 10 s~h~DlihdVs--~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVS--FDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeee--ecccCce-eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 46778888888 8888888 99999999999999643 345666789999999999964 3334899999999999
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC--CCCEEEEeeCCCcEEEEeCCCccEEE------EEe------
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVV------TFR------ 533 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~------ 533 (706)
||.-..... ............+......|+.+.|.| -|-.||+++.||.++||+..+...+. .++
T Consensus 87 iWEE~~~~~-~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 87 IWEEQEKSE-EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeccccc-ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 998652221 112234556667778889999999999 47899999999999999876543222 222
Q ss_pred -ecCCcEEEEEEccC---CCEEEEecCC-----CcEEEEEcCCC----ceEEEEeecccCEEEEEEEeCC----CEEEEE
Q 005254 534 -GHKRGIWSVEFSPV---DQVVITASGD-----KTIKIWSISDG----SCLKTFEGHTSSVLRASFLTRG----AQIVSC 596 (706)
Q Consensus 534 -~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~~----~~l~~~ 596 (706)
.+..+..|+.|+|. ..+||.|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+- ..||++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 35667889999974 4678888766 47899987544 3456788899999999999963 368999
Q ss_pred eCCCCEEEEECCC--------------------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 597 GADGLVKLWTVRT--------------------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 597 ~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.|| |+||.+.. -+.+..+..|+++|+.+.|.-.|..|.+.|.||++++|+..-..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999 99999873 12455677999999999999999999999999999999765433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-20 Score=189.51 Aligned_cols=373 Identities=34% Similarity=0.599 Sum_probs=291.9
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-EEEEeeCCCC-cEEEEEE-cCCCCceEEEE-EecCCeEEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFKGHKG-VVSSILF-HPDTDKSLLFS-GSDDATVRV 172 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~l~~-~~~dg~i~v 172 (706)
.+..|...+..+.|.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++.. .++. +..|+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEEE
Confidence 456789999999999999999999999999999999886 6666666443 7777777 676663 3444 455999999
Q ss_pred EECCC-CeeEEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 173 WDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 173 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
|+... ......+..|...|..++|+|++..+++++. ++.+++|+.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 189 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK----------------------------- 189 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-----------------------------
Confidence 99988 7888888999999999999999998888875 8888888875411
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (466)
T COG2319 190 -------------------------------------------------------------------------------- 189 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
....+.+|...+.+++ +.+++
T Consensus 190 ---------------------------------------------------------~~~~~~~~~~~v~~~~--~~~~~ 210 (466)
T COG2319 190 ---------------------------------------------------------PLSTLAGHTDPVSSLA--FSPDG 210 (466)
T ss_pred ---------------------------------------------------------eEEeeccCCCceEEEE--EcCCc
Confidence 1112233566666666 55666
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
..++++++.|+.+++||...+..+. .+..|.... ...|++++. ++++++.|+.+++|+...... ....
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~---------~~~~ 279 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS---------LLRT 279 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc---------EEEE
Confidence 6446666899999999988887777 677787775 448999984 788999999999999986532 1222
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS 566 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~ 566 (706)
...|...+.++.+.|++..+++++.|+.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence 25678899999999988888889999889999998887777766 788889999994332556555 688999999998
Q ss_pred CCceEEEEeecccCEEEEEEEeCCCEEEE-EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 645 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 645 (706)
........... ..+..+.+++ ...... +..++.+.+|+............+...+....+++++..+++++.++.+.
T Consensus 360 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 360 TGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 77733333222 2278888888 544444 68899999999999888877766547899999999999999999999999
Q ss_pred EEECCc
Q 005254 646 LWHDST 651 (706)
Q Consensus 646 vw~~~~ 651 (706)
+|+...
T Consensus 438 ~~~~~~ 443 (466)
T COG2319 438 LWDLKT 443 (466)
T ss_pred EEeccC
Confidence 999987
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=204.04 Aligned_cols=286 Identities=20% Similarity=0.258 Sum_probs=222.1
Q ss_pred EEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC---c
Q 005254 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---M 386 (706)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~---~ 386 (706)
+...++...+++++ ...+.+|..........-....+.-....-...++.|..-..+++++++..|.|.+||+.. .
T Consensus 45 Is~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn 123 (839)
T KOG0269|consen 45 ISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN 123 (839)
T ss_pred EeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccc
Confidence 33444444444443 3445555555443222211111222223334556777777889999999999999999987 5
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
+.+..+..|...+.+++ |++....+|++|+.||.|++||++..+....+......|+.+.|+|...+.++++...|.+
T Consensus 124 k~l~~f~EH~Rs~~~ld--fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 124 KLLTVFNEHERSANKLD--FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred hhhhHhhhhccceeeee--eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 66668899999999999 8888888999999999999999999999999999999999999999888899999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEE--EEEeecCCcEEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV--VTFRGHKRGIWSVEF 544 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~ 544 (706)
++||++... .....+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+.. .++. ...+|..+.|
T Consensus 202 qlWDlRqp~---------r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkW 271 (839)
T KOG0269|consen 202 QLWDLRQPD---------RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKW 271 (839)
T ss_pred EEeeccCch---------hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeee
Confidence 999998653 255667889999999999999999999999999999999865443 3333 4578999999
Q ss_pred ccCCCE-EEEec--CCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEECC
Q 005254 545 SPVDQV-VITAS--GDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 545 s~~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 608 (706)
-|...+ ||+++ .|-.|+|||+... -+..++..|...++.++|.. |-..|.+++.||.|..-..+
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 997664 66654 4788999999755 45678888999999999965 44578899999987654443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-23 Score=183.01 Aligned_cols=306 Identities=17% Similarity=0.257 Sum_probs=224.8
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC----eeEEEeecccceEEEEEEecCC-CEE
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK----KCVATLDKHFSRVTSMAITSDG-STL 203 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l 203 (706)
.|+.+-......+.+.++|++++|+|..+..++++|...|+|-+||+.+. ..+..+..|.++|.+|.|+|.. ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44555555666777999999999999988889999999999999999522 2455678899999999999954 578
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
++.+.||+|+.-|++.......+..
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------- 275 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------- 275 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhc-------------------------------------------------------
Confidence 8999999999988765321110000
Q ss_pred CeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC
Q 005254 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (706)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 363 (706)
T Consensus 276 -------------------------------------------------------------------------------- 275 (498)
T KOG4328|consen 276 -------------------------------------------------------------------------------- 275 (498)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCc
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMG 442 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 442 (706)
++ .......++ +..+... ++.+..=|.+.+||.+++.. ...+..|..
T Consensus 276 ~~-----------------------------d~~~fs~~d--~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 276 DT-----------------------------DNIWFSSLD--FSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred Cc-----------------------------cceeeeecc--ccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhc
Confidence 00 000111222 4444555 56666666888999887654 666777888
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
.|++++++|..+.++++++.|++.+|||++....... +......|...|.+..|||.+-.|++.+.|..|+|||
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC------cceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 9999999999999999999999999999987643222 2344567899999999999888899999999999999
Q ss_pred CC----CccEEEEEeecCC------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEE-EEEEeCC
Q 005254 523 LP----DLVSVVTFRGHKR------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLR-ASFLTRG 590 (706)
Q Consensus 523 ~~----~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~-~~~s~~~ 590 (706)
.. ...+...+. |+. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+
T Consensus 398 ss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 83 344444444 332 234568999999999999988999999988887877654332 4444 4889987
Q ss_pred CEEEE-EeCCCCEEEEECC
Q 005254 591 AQIVS-CGADGLVKLWTVR 608 (706)
Q Consensus 591 ~~l~~-~~~dg~i~iwd~~ 608 (706)
..+++ ++..|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 74555 4556788888643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=193.78 Aligned_cols=296 Identities=20% Similarity=0.295 Sum_probs=203.5
Q ss_pred EEEcc---CCCEEEEEeccCeEEEEECCCCeE------EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE
Q 005254 66 LALSP---DDKLLFSSGHSREIRVWDLSTLKC------LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 66 l~~s~---~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~ 136 (706)
..|++ ....||.+.++|.|.++|.+.... +..+..|...|..+.|-|....|++++.|.++++||+.++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55665 346789999999999999875432 355667999999999999777899999999999999999988
Q ss_pred EEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--------------------e-------EEEeecc
Q 005254 137 THY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--------------------C-------VATLDKH 187 (706)
Q Consensus 137 ~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------~-------~~~~~~~ 187 (706)
... +.+|.+.|.++||.|+ +..++++|+.||.|.|||++-.. . +.....+
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred ecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 776 8899999999999998 45689999999999999985322 0 0011123
Q ss_pred cceEEE---EEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 188 FSRVTS---MAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 188 ~~~v~~---~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
...|.+ +.+..|...|++++. |+.|+|||++............
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~--------------------------------- 260 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG--------------------------------- 260 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc---------------------------------
Confidence 333333 445556777888776 8888888887654332221100
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
............+++.++....|.++++.+.|+.|+.|++....
T Consensus 261 ------------------------------~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s------ 304 (720)
T KOG0321|consen 261 ------------------------------SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS------ 304 (720)
T ss_pred ------------------------------ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC------
Confidence 00000001112344555555555555555555555555544321
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
......+.++...-..+..+.+|++.. +++|+.|...
T Consensus 305 ------------------------------------------~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgSsd~~a 341 (720)
T KOG0321|consen 305 ------------------------------------------ISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGSSDEQA 341 (720)
T ss_pred ------------------------------------------cCchhhccCcccceeeeeeecCCCCce-EeccCCCcce
Confidence 111223333333333344447788887 9999999999
Q ss_pred EEEeCCCce-EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 424 RLWDSESRC-CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 424 ~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
++|.+.+.+ ....+.+|.-.|++++|.|..-.-+++++.|..+++|++..+
T Consensus 342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 342 YIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999998764 344577899999999998876556889999999999999655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-20 Score=187.43 Aligned_cols=371 Identities=34% Similarity=0.609 Sum_probs=283.3
Q ss_pred eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeeccCC-CeEEEEE-CCCCC-EEEEecC-CCcEEEE
Q 005254 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDG-PAIGMAC-HPSGG-LLATAGA-DRKVLVW 129 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-s~~~~-~l~~~~~-d~~i~vw 129 (706)
.+..|...|.++.+.+.+..++.++.++.+.+|+...+. .+..+..+.. .+..+.+ ++++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466789999999999999999999999999999999887 7777776443 7888887 88888 5555444 8999999
Q ss_pred ECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CCeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEE
Q 005254 130 DVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISA 206 (706)
Q Consensus 130 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 206 (706)
+... ......+..|...|..++|+|++.. +++++. ++.+++|+...+..+..+.+|...+.+++|+|++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKL--LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCE--EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9998 7888889999999999999999874 777775 99999999999889999999999999999999998 55555
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
+.|+.+++||...+.....
T Consensus 218 ~~d~~i~~wd~~~~~~~~~------------------------------------------------------------- 236 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRS------------------------------------------------------------- 236 (466)
T ss_pred cCCCcEEEEECCCCcEEee-------------------------------------------------------------
Confidence 8899999997653221110
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
T Consensus 237 -------------------------------------------------------------------------------- 236 (466)
T COG2319 237 -------------------------------------------------------------------------------- 236 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCcCeE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVG 445 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~ 445 (706)
.+.+|.... ... +.+++.. +++++.|+.+++|+...... +.....|...+.
T Consensus 237 ------------------------~~~~~~~~~-~~~--~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 237 ------------------------TLSGHSDSV-VSS--FSPDGSL-LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred ------------------------ecCCCCcce-eEe--ECCCCCE-EEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 011111111 001 5555544 66888999999999886654 444467789999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE--EeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEe
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV--VAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWR 522 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d 522 (706)
++.|.|++. .+++++.|+.+.+|+..... .... ...|...+..+.+.+++..++.+ ..|+.+.+|+
T Consensus 289 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 289 SVAFSPDGK-LLASGSSDGTVRLWDLETGK----------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEECCCCC-EEEEeeCCCcEEEEEcCCCc----------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 999999766 55558888889999876543 1222 23566678889884343556555 6788999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL 601 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 601 (706)
........... ....+..+.+++ ...... +..++.+.+|+............+...+....+++++..+++++.++.
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 358 LRTGKPLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred cCCCceeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCc
Confidence 98877333222 222288999998 544444 688999999999888877776644378899999999999999999999
Q ss_pred EEEEECCC
Q 005254 602 VKLWTVRT 609 (706)
Q Consensus 602 i~iwd~~~ 609 (706)
+++|+..+
T Consensus 436 ~~~~~~~~ 443 (466)
T COG2319 436 IRLWDLKT 443 (466)
T ss_pred EEEEeccC
Confidence 99999988
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-22 Score=187.18 Aligned_cols=541 Identities=14% Similarity=0.163 Sum_probs=336.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccC------------CCEEEEEeccCeEEEEEC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPD------------DKLLFSSGHSREIRVWDL 89 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~------------~~~l~s~~~d~~i~iwd~ 89 (706)
.+++.++|.| ++|+|+++.|.+.|..+.+.++.++-|...|+.+.|.|- .-+||++...|.|.+||.
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 3478888888 999999999999999999999999999999999999872 236778888999999999
Q ss_pred CCCeEEEEeeccCCCeEEEEECC---CC-CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 90 STLKCLRSWKGHDGPAIGMACHP---SG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
..+..+..+..|..++..++|-+ +. ..|++......|.+||..+|+.............|+.+.|-...++.+.|+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence 99999999999999999999977 33 467777777899999999999998887777778889999976666666655
Q ss_pred cCCeEEEEECC-------CCeeEEEeecccc-------------------------eEEEEEEecCCCEEEEEeCCCEEE
Q 005254 166 DDATVRVWDLL-------AKKCVATLDKHFS-------------------------RVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 166 ~dg~i~vwd~~-------~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
. |.+.+-+.- .++..+.-..|.. ....++|+|.-+.++.......+.
T Consensus 177 ~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 177 K-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred C-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 4 445544431 1233333222221 012356677766666666778888
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
++|++-..++..++.+..
T Consensus 256 v~dle~~~~l~vvpier~-------------------------------------------------------------- 273 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERG-------------------------------------------------------------- 273 (1062)
T ss_pred EEcchhhceeEEEEeccC--------------------------------------------------------------
Confidence 888876666655554332
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee---------EEeeEecc-cCceeeEeeEeC
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL---------ILSKRLVG-YNEEILDLKFLG 363 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~v~~~~~~~ 363 (706)
...+......|..+.+++.-.||.+.+|.....++..... .....+.. ..-.+......|
T Consensus 274 ----------~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cP 343 (1062)
T KOG1912|consen 274 ----------GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCP 343 (1062)
T ss_pred ----------CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCC
Confidence 1112222233344456666666666666555433221110 00000000 011122233345
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEe-------------------------------eeCCcceEEEeeee-------
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYV-------------------------------LAGHSEIVLCLDTC------- 405 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~-------------------------------~~~~~~~i~~~~~~------- 405 (706)
.+...+++-..+|...+|.+.+++.... -.+|.....+..+-
T Consensus 344 s~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 344 STPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred CChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccce
Confidence 5566666666777777777764321110 01233333332210
Q ss_pred -ee-cCC------CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec----------CCCeEE
Q 005254 406 -AL-SSG------KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS----------SDHTIK 467 (706)
Q Consensus 406 -~~-~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~d~~i~ 467 (706)
.. |.+ ..+++.|...|+|.++|+.++.....+..|.+.|.++.|..... +++.+ .-+.+.
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss--lvSfsys~~n~~sg~vrN~l~ 501 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS--LVSFSYSHVNSASGGVRNDLV 501 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee--EEEeeeccccccccceeeeEE
Confidence 11 111 23688999999999999999999999999999999999987754 44332 234567
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE----------EE----e
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----------TF----R 533 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~----~ 533 (706)
+-|++++-... ..........+|+.+..|..|+||+....+.-+.+||+++...++ .+ .
T Consensus 502 vtdLrtGlsk~-------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~ 574 (1062)
T KOG1912|consen 502 VTDLRTGLSKR-------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP 574 (1062)
T ss_pred EEEcccccccc-------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc
Confidence 77777763211 111223456789999999999999999999999999985432111 00 0
Q ss_pred ec------------------------CCcEE---------------------------EEEEccCCCEEEEecCCCcEEE
Q 005254 534 GH------------------------KRGIW---------------------------SVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 534 ~~------------------------~~~v~---------------------------~~~~s~~~~~l~~~~~dg~i~i 562 (706)
.| ...+. .++| .+..|+.|..+|.+.+
T Consensus 575 ~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~ 652 (1062)
T KOG1912|consen 575 KHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVV 652 (1062)
T ss_pred CCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeE
Confidence 00 01111 1222 2567999999999999
Q ss_pred EEcCCCceEEEE--eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 563 WSISDGSCLKTF--EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 563 wd~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
||+...+..... ..|........+.|....++.--.|+ +-+||.+.-..+..+.+-...-..+...-++..=.....
T Consensus 653 WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~lvl~~d~-~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~ 731 (1062)
T KOG1912|consen 653 WDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTLVLELDW-LPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPN 731 (1062)
T ss_pred EecccccccCccCCCCchhhheecccCCCCceEEEEecCc-ceecccccceeeeeeccCCcceEEEEEEecccCceecCC
Confidence 998543222211 11222233333344333344444444 778888777777777554444444443333332222233
Q ss_pred CCcEEEEE
Q 005254 641 DALVNLWH 648 (706)
Q Consensus 641 dg~i~vw~ 648 (706)
|.++++-.
T Consensus 732 d~~~Rf~~ 739 (1062)
T KOG1912|consen 732 DNKERFRV 739 (1062)
T ss_pred CCceeEEe
Confidence 44555543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-22 Score=167.74 Aligned_cols=272 Identities=16% Similarity=0.283 Sum_probs=196.5
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+..=+.++++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 458888999999999999999999999999996443 4566788999999999998766667899999999999996
Q ss_pred CCC---------CeeEEEeecccceEEEEEEecC--CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 175 LLA---------KKCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 175 ~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
-.. -....++....+.|+.+.|.|. |-.|++++.||.+++|+..+...+...+....+..+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~------ 163 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID------ 163 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC------
Confidence 421 1234556677789999999985 66899999999999998754322221111110000000
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (361)
T KOG2445|consen 164 -------------------------------------------------------------------------------- 163 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
....+..+..|+.
T Consensus 164 -------------------------------------------------------------------pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 164 -------------------------------------------------------------------PPGKNKQPCFCVS 176 (361)
T ss_pred -------------------------------------------------------------------CcccccCcceEEe
Confidence 0111223344555
Q ss_pred eeeecCCCEEEEEeeCC-----CcEEEEeCCCc----eEEEEEeCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEe
Q 005254 404 TCALSSGKILIVTGSKD-----NSVRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~ 471 (706)
|+.+.-...++++|+.+ +.+.||....+ ..+..+..|..+|+.++|.|+-. .+|++++.|| |+||++
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 44444444456666655 46777765443 24456778999999999999643 4799999999 999999
Q ss_pred cCCC----------CCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 472 DGLS----------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 472 ~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.... .......+......+..|+..|..+.|+-.|..|++.+.||.|++|...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8421 1222234455566678899999999999999999999999999999764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-25 Score=209.06 Aligned_cols=221 Identities=29% Similarity=0.524 Sum_probs=197.7
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
++.+...-.+++||.+. +..|...+.++..-..++ .+++|+.|..+-+|.+.... ....+.+|
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~----------~i~S~~~h 69 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPN----------AITSLTGH 69 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeeccce-eeccCCCceeeccccccCCc----------hhheeecc
Confidence 34444455677887653 345777777777744444 89999999999999987542 33447899
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..+|.++.|+++..+|++|+.+|+|++||+..++.+.++.+|...+.++.|+|-+.+.+.|+.|+.+++||++...|...
T Consensus 70 espIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 70 ESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+.+|...+..+.|+|+|++++.+++|..++|||+..|+.+..|..|.+.+.++.|+|..-++++|+.|+++++||+++
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=172.22 Aligned_cols=285 Identities=17% Similarity=0.232 Sum_probs=223.7
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 435 (706)
..++.|++ .+.++|+|+.+|.+.+||+.+......+.+|..+|.++. ++++++. |++++.|..+.+||+..|.++.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~--WS~dgr~-LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLC--WSRDGRK-LLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEE--ecCCCCE-eeeecCCceeEEEeccCCCcee
Confidence 45666665 899999999999999999999999999999999999998 8888888 9999999999999999999888
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
.+. ..++|....|+|..++..++.-.+..-.+-++....... . +...-...+....+..|.+.|+++++|...
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~---L---p~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV---L---PKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee---c---cCCCccccccccccccccCCCCEEEEecCc
Confidence 776 568999999999887777766666555666655321100 0 000000011112234688899999999999
Q ss_pred CcEEEEeCCCccEEEEEeecC-CcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-------ce--EEEEee--cccCEEE
Q 005254 516 RTACVWRLPDLVSVVTFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-------SC--LKTFEG--HTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~--~~~~i~~ 583 (706)
|.+.++|..+.+.+..++-.. ..|..+.++..|+.|+..+.|..||.|+++.- ++ .+++.. ....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998888766 78999999999999999999999999998621 11 111110 1234567
Q ss_pred EEEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 584 ASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++||.+|.|++.++. ...++||.-..|.+++.+.|.. .....+.|+|-...+++. ..|.+++|.....
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 899999999987764 3589999999999999999877 567789999999888877 6889999987554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=172.05 Aligned_cols=316 Identities=20% Similarity=0.301 Sum_probs=228.1
Q ss_pred eecCCCccEEEEEEcc-----CCCEEEEEeccCeEEEEECCCCe---EEEEee--ccCCCeEEEEECCC----CCEEEEe
Q 005254 55 TIEGGSDTITALALSP-----DDKLLFSSGHSREIRVWDLSTLK---CLRSWK--GHDGPAIGMACHPS----GGLLATA 120 (706)
Q Consensus 55 ~l~~~~~~i~~l~~s~-----~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~s~~----~~~l~~~ 120 (706)
..+.|..+|..++|.+ .-+.+|+++.+ .+.+|.....- .++... .|......++|+-| ..+||++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4457889999999985 23566666655 78999876433 333332 26677888888764 4589999
Q ss_pred cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccceEEEEEEe
Q 005254 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAIT 197 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~ 197 (706)
+.-|.|+|.|+.+++....+.+|...|..+.|+|+ +.+++++++.|..|++|++++..++..+ .+|.+.|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 99999999999999999999999999999999998 5568999999999999999999999887 5799999999999
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEE
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVR 277 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 277 (706)
++|.+++++|.|..+++|++...+....+... ..+.+++....
T Consensus 191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~p-------------------------------- 233 (385)
T KOG1034|consen 191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRP-------------------------------- 233 (385)
T ss_pred CCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCc--------------------------------
Confidence 99999999999999999999865543332211 11112211000
Q ss_pred EEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceee
Q 005254 278 MWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 357 (706)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 357 (706)
.|.....+.......-|...|-
T Consensus 234 ----------------------------------------------------------fpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 234 ----------------------------------------------------------FPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ----------------------------------------------------------CCccccccccccccccccchHH
Confidence 0000000111112233556666
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCC-ce-------------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MS-------------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
++.|.. +++++-+.++.|..|.... .+ ....+.-....+.-+.+.+.+-.+. |+.|...|.+
T Consensus 256 Cvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gnq~g~v 331 (385)
T KOG1034|consen 256 CVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGNQSGKV 331 (385)
T ss_pred HHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-HhhccCCCcE
Confidence 777754 6777777888999998721 11 1223334455666677667777777 9999999999
Q ss_pred EEEeCCCceEEE----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 424 RLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 424 ~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
.+||++...+.. .-......|...+|+.++. +|+....|++|.-||.-
T Consensus 332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence 999998765521 1123456788999999988 88889999999988853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=179.63 Aligned_cols=291 Identities=21% Similarity=0.254 Sum_probs=225.4
Q ss_pred eEecccCceeeEeeEeCCCC-cEEEEEecCCcEEEEeCCC----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 347 KRLVGYNEEILDLKFLGEEE-QYLAVATNIEQVQVYDLSS----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~-~~l~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+.|.+++|.|... .++++|...|+|-+||+.+ ......+..|..+|.++. |+|.+...+++.+.||
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~--F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLK--FSPANTSQIYSSSYDG 257 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceE--ecCCChhheeeeccCc
Confidence 44456788999999999877 8899999999999999953 234567888999999999 8888888899999999
Q ss_pred cEEEEeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
+|++-|+++...-..+.. ....+..+.|+.+.+ .++.+..=|...+||++.... ......-|...|++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s---------~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGS---------EYENLRLHKKKITS 327 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCc---------cchhhhhhhcccce
Confidence 999999988754433333 455677788888776 566666666999999987643 23334457778999
Q ss_pred EEEcCC-CCEEEEeeCCCcEEEEeCCCcc----EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC----CCce
Q 005254 500 LAVAPN-DSLVCTGSQDRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS----DGSC 570 (706)
Q Consensus 500 ~~~s~~-~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~ 570 (706)
++++|. ..+|++++.|++.+|||++... ++.....|...|.+..|||++..|++.+.|..|+|||.. ...+
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 999995 4688999999999999997542 234445699999999999998889999999999999983 3334
Q ss_pred EEEEeeccc------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC-cEEE-EEEcCCCCEEE-EEeCC
Q 005254 571 LKTFEGHTS------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWA-LAVGKKTEMFA-TGGSD 641 (706)
Q Consensus 571 ~~~~~~~~~------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l~-~~~~d 641 (706)
..++. |.. ......|.|+..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+.-++ -++..
T Consensus 408 ~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 44444 432 234568999999999999999999999998888888654333 5555 47899887444 45567
Q ss_pred CcEEEEECC
Q 005254 642 ALVNLWHDS 650 (706)
Q Consensus 642 g~i~vw~~~ 650 (706)
|.|.||.-+
T Consensus 487 Gki~vft~k 495 (498)
T KOG4328|consen 487 GKIYVFTNK 495 (498)
T ss_pred ceEEEEecC
Confidence 888888644
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=170.03 Aligned_cols=291 Identities=19% Similarity=0.273 Sum_probs=219.2
Q ss_pred eEecccCceeeEeeEeC----CCCcEEEEEecCCcEEEEeCCCceeeEeee-----CCcceEEEeeeeeecC-CCEEEEE
Q 005254 347 KRLVGYNEEILDLKFLG----EEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCALSS-GKILIVT 416 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~~~~l~~ 416 (706)
+....++.++.+++|.+ +..+.+++.+ ...+.+|.....--+..++ .+.......+|++... ++.++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34445677888888863 2334444444 4778888876544333322 2455566677666655 5778999
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE---Eeec
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV---VAAH 493 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~---~~~~ 493 (706)
++.-|.|++.|+.+++....+.+|...|..+.+.|+..+++++++.|..|++|++++.. +... ..+|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~----------Cv~VfGG~egH 180 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV----------CVAVFGGVEGH 180 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe----------EEEEecccccc
Confidence 99999999999999999999999999999999999998999999999999999998753 4433 4679
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE------E----------------E------EEeecCCcEEEEEEc
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS------V----------------V------TFRGHKRGIWSVEFS 545 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~----------------~------~~~~~~~~v~~~~~s 545 (706)
...|.++.|+++|.++++++.|.++++|++...+. . . +-.-|...|-|+.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 99999999999999999999999999999873211 0 0 112356666666665
Q ss_pred cCCCEEEEecCCCcEEEEEcC-CC-------------ceEEEEeecccCEEEEEEE--eCCCEEEEEeCCCCEEEEECCC
Q 005254 546 PVDQVVITASGDKTIKIWSIS-DG-------------SCLKTFEGHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 546 ~~~~~l~~~~~dg~i~iwd~~-~~-------------~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
|.++++-+-++.|..|... -. ..+.++......|.-+.|+ |-++.||.|...|.|++||++.
T Consensus 261 --gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 --GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred --hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 6789998999999999861 11 1234444455566666655 5578899999999999999998
Q ss_pred CeEEE--Eec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 610 GECIA--TYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~--~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++.. ++. .....|...+||.|+..|+....|++|.-||.-
T Consensus 339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 77631 121 224578999999999999999999999999853
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=180.57 Aligned_cols=285 Identities=17% Similarity=0.243 Sum_probs=214.1
Q ss_pred CeEEEEECCCCeEEEEeeccC--CCeEEEEECCCCCE-EEEecCCCcEEEEECCCC--eE--EEEeeCCCCcEEEEEEcC
Q 005254 82 REIRVWDLSTLKCLRSWKGHD--GPAIGMACHPSGGL-LATAGADRKVLVWDVDGG--FC--THYFKGHKGVVSSILFHP 154 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~-l~~~~~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~ 154 (706)
..+++||....+....+..|. ..+.++.|+....+ +++.+.|..+++|.-... +. +....+. .-.|++...
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s 89 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACAS 89 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhh
Confidence 369999998776655554433 35889999887642 233456888999975433 11 1112221 223333333
Q ss_pred CCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeee
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~ 234 (706)
. ..++++|+..+.|+|||++...+.+.+++|...|+++.+.....+|++++..|.|.+..+.++.....+...
T Consensus 90 ~--S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~----- 162 (673)
T KOG4378|consen 90 Q--SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID----- 162 (673)
T ss_pred c--ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-----
Confidence 2 245999999999999999988888899999999999999999999999999999999887765432221110
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEcc
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP 314 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (673)
T KOG4378|consen 163 -------------------------------------------------------------------------------- 162 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 394 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (673)
T KOG4378|consen 163 -------------------------------------------------------------------------------- 162 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
....+.-+. +++..+.+|.+++.+|.|.+||.....++.. ...|..+...++|+|....++++.+.|..|.+||...
T Consensus 163 sgqsvRll~--ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 163 SGQSVRLLR--YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred CCCeEEEee--cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 000112233 6677777899999999999999998777655 4579999999999999998999999999999999975
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCC
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
.. .........+.+.++|+++|.+|++|...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 241 ~~-----------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QA-----------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cc-----------ccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 42 222233456789999999999999999999999999985 46788888999999999998753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=169.70 Aligned_cols=164 Identities=23% Similarity=0.404 Sum_probs=141.9
Q ss_pred CccEEEEEEccCCC-EEEEEeccCeEEEEECCCC---------eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 60 SDTITALALSPDDK-LLFSSGHSREIRVWDLSTL---------KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 60 ~~~i~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
..+|..+.|.++.. .||+|+.|..|+||-+..+ +.+..+..|...|+++.|+|+|..||+|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46889999999887 9999999999999988543 2445677899999999999999999999999999999
Q ss_pred ECC--------C--------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEE
Q 005254 130 DVD--------G--------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 193 (706)
Q Consensus 130 ~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 193 (706)
... + -.....+.+|...|..++|+|++.. +++++.|..+++||+..|.....+..|...+..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~--l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF--LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce--eeeeeccceEEEEEeccceeEeeccccccccce
Confidence 876 2 1234567789999999999998776 999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceee
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 225 (706)
++|.|-++++++-+.|...+.+.+...+.+..
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 99999999999999998777777665544433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=173.42 Aligned_cols=248 Identities=17% Similarity=0.309 Sum_probs=189.0
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----------------ceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------------RCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
...|.+.+..+...... +..+.++-+..|.|.||++.. .+++.++.+|...=.+++|||-...
T Consensus 147 ~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34455555555522222 445578888999999999652 3456677889999999999995444
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCcc--EEEEE
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLV--SVVTF 532 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~ 532 (706)
.|++|.--+.|++|....+.-.. ....+.+|...|..++|||. ...+++|+-||+|+|||++.+. .....
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred ccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 68999989999999987653111 12334569999999999995 4688999999999999999872 22334
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC---CceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD---GSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 608 (706)
+.|.+.|+.+.|+....+||+|+.||+++|||++. ++++..++.|..+|+++.|+|. ...+++++.|..|.+||+.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 78999999999999988999999999999999864 5778999999999999999985 4578889999999999996
Q ss_pred CCeE-----------EE-----EeccC--CCcEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 005254 609 TGEC-----------IA-----TYDKH--EDKIWALAVGKKT-EMFATGGSDALVNLWH 648 (706)
Q Consensus 609 ~~~~-----------~~-----~~~~~--~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~ 648 (706)
.-.- +. -+--| ...+..+.|++.- .+|++.+.|| +.||.
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 2110 10 11123 3467788998864 4788888898 66665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=167.56 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=181.1
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeC--CCc---CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTG--HMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..++++.+.+.-|.+||.-+|+....+.. |.. ...+++|+|||. .|+ ++....|++||+............
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy~t-- 198 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVYTT-- 198 (406)
T ss_pred cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcchhh--
Confidence 33488888899999999999988776653 323 345799999998 444 556789999999543221111000
Q ss_pred eeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIW 563 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 563 (706)
...-..+..+-+.+++|+| +...+++|+....+-||.-..+.++..+-+|.+.|+.++|.++|+.|++|.. |-.|..|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 0011233456789999999 4569999999999999999999999999999999999999999999999876 6789999
Q ss_pred EcCCC-ceEEEEeeccc-CEEEE--EEEeCCCEEEEEeCCCCEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 564 SISDG-SCLKTFEGHTS-SVLRA--SFLTRGAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 564 d~~~~-~~~~~~~~~~~-~i~~~--~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
|++.. .++..+..|.+ .-..+ ...|++++|++|+.||.|++||+++ |+.+..+..|...++.++++|--.+++|+
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 99754 45666666665 22334 4468899999999999999999998 78888888999999999999998888888
Q ss_pred eCCCcEEEEECCch
Q 005254 639 GSDALVNLWHDSTA 652 (706)
Q Consensus 639 ~~dg~i~vw~~~~~ 652 (706)
+.. ++|...+.
T Consensus 359 sGq---r~f~~~~d 369 (406)
T KOG2919|consen 359 SGQ---RIFKYPKD 369 (406)
T ss_pred cCc---eeecCCCc
Confidence 755 55555544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=178.57 Aligned_cols=295 Identities=19% Similarity=0.244 Sum_probs=216.3
Q ss_pred CEEEEeeCCeEEEEEccCCeEEEeecCC--CccEEEEEEccCCCE-EEEEeccCeEEEEECCC--CeEEEEeeccCCCeE
Q 005254 32 SFIACACGESINIVDLSNASIKSTIEGG--SDTITALALSPDDKL-LFSSGHSREIRVWDLST--LKCLRSWKGHDGPAI 106 (706)
Q Consensus 32 ~~l~~~~~~~i~i~d~~~~~~~~~l~~~--~~~i~~l~~s~~~~~-l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~ 106 (706)
++.++.+++.+.+||+...+....+-.| .-.+.++.|+....+ +|+.+.|..|++|.-.. ++....-+.....-.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 4677777889999999876655444433 235899999987742 23445688899996422 222221111222344
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
|++......|+++|+..+.|+|||++...+.+.+++|...|+++.+.....+ +++++..|.|.|..+.++.....+..
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey--iAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY--IASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce--eEEeccCCcEEEEecccCccccceec
Confidence 5555555589999999999999999987778888999999999999887665 99999999999999999888877765
Q ss_pred c-cceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 187 H-FSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 187 ~-~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
. ...|.-+.|++..+ +|.+++.+|.|.+||+........
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--------------------------------------- 202 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--------------------------------------- 202 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---------------------------------------
Confidence 4 34566889998766 455678889999999865432211
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
T Consensus 203 -------------------------------------------------------------------------------- 202 (673)
T KOG4378|consen 203 -------------------------------------------------------------------------------- 202 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....|..+...+. |+|.+..++++.+.|..|.
T Consensus 203 ----------------------------------------------~~~~HsAP~~gic--fspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 203 ----------------------------------------------ASEAHSAPCRGIC--FSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred ----------------------------------------------hhhhccCCcCcce--ecCCccceEEEecccceEE
Confidence 1122333333333 6677777788888888888
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||....+....+. ...+.++++|.++|. +|++|...|.|..||++..+. +......|...|++++|-|
T Consensus 235 ~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~k~---------Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRSTKA---------PVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred Eeecccccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEecccCCC---------CceEeeecccceeEEEeee
Confidence 88887665554443 456889999999987 999999999999999987542 6677888999999999987
Q ss_pred CC
Q 005254 505 ND 506 (706)
Q Consensus 505 ~~ 506 (706)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 64
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=176.13 Aligned_cols=221 Identities=23% Similarity=0.399 Sum_probs=174.3
Q ss_pred eCCCcCeEEEEEecCCC-eEEEEecCCCeEEEEEecCCCCC------CCcccccceeEEEeecCcceEEEEEcCC-CCEE
Q 005254 438 TGHMGAVGAVAFSKKLQ-NFLVSGSSDHTIKVWSFDGLSDD------AEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLV 509 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l 509 (706)
..|.+.+..+..++-++ .+.++-+..|.|+||++...-.. ........+...+.+|...-..++|||- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35666777776666543 35666678899999998643111 1112344466778889999999999993 2357
Q ss_pred EEeeCCCcEEEEeCCCccEE---EEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCC---ceEEEEeecccCEE
Q 005254 510 CTGSQDRTACVWRLPDLVSV---VTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVL 582 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 582 (706)
++|.--+.|++|...++.-. ..+.+|...|..++|||.. ..|++|+.||+|+|||++++ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 78887889999998886432 3456799999999999964 57899999999999999988 33444 77999999
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCC---CeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRT---GECIATYDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
.+.|+.+-.+||+|+.||+++|||++. ++++..++.|..+|+++.|+|.. ..|+++|.|..|.+||+.-+...+++
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999974 67899999999999999999865 46778899999999999877765444
Q ss_pred H
Q 005254 659 F 659 (706)
Q Consensus 659 ~ 659 (706)
.
T Consensus 387 ~ 387 (440)
T KOG0302|consen 387 D 387 (440)
T ss_pred c
Confidence 3
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=165.12 Aligned_cols=306 Identities=16% Similarity=0.265 Sum_probs=211.4
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.+...+++|.+.|+++.|-.+++ |.+|...|.|++|++++.+....++ .+...|+.+.-.|++. +.+-+.|+.+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~ 80 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI 80 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence 35566779999999999998875 8889999999999999999888888 6788899999999744 89999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
+|++..+..+. .|.-.++++.|.+-. +...+... .+..++-+.....
T Consensus 81 lw~ia~s~~i~---i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~--------------------------- 128 (323)
T KOG0322|consen 81 LWTIAYSAFIS---IHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDET--------------------------- 128 (323)
T ss_pred EEEccCcceEE---Eeeeeccccccccce--eccCCCcchhheecCCcccchh---------------------------
Confidence 99987654432 344455666665432 22211111 0011110000000
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
+..-++..
T Consensus 129 ---------------h~~D~g~~--------------------------------------------------------- 136 (323)
T KOG0322|consen 129 ---------------HKQDGGDT--------------------------------------------------------- 136 (323)
T ss_pred ---------------hhhccCcc---------------------------------------------------------
Confidence 00000000
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
-++++-|- .-.+..+.+.|..+.+.-..
T Consensus 137 ---------------------------------------------tqv~i~dd-------~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 137 ---------------------------------------------TQVQIADD-------SERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred ---------------------------------------------ceeEccCc-------hhccccCceeeeeccccccc
Confidence 00000000 00112223333332233344
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEE----------EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCV----------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..++++|.++|.+.+||+.++..+ .....|..+|.++.+.+.-. .=++|+.+..+..|.++......
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gsl-- 241 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSL-- 241 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcc--
Confidence 456888899999999999987333 33446889999999987533 56788888899999987653221
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
.......-.+..+..+.+-||++.+|+++.|+.|++|..++..++..++-|...|.+++|+|+...+|.++.|++|
T Consensus 242 ----q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 242 ----QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred ----cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 1222233344568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 005254 561 KIWSI 565 (706)
Q Consensus 561 ~iwd~ 565 (706)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=171.72 Aligned_cols=239 Identities=21% Similarity=0.294 Sum_probs=187.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCcee---------------------eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSC---------------------SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
..++++|+|+-+..|.+||+.-... .....+|+..+..+. +....+.+|++|+.|.+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls--~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS--WNRNFRNVLASGSADKT 267 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH--hccccceeEEecCCCce
Confidence 4578999999999999999862111 011235777777777 55666778999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|.+||+.++++...+..|...|.++.|+|....+|++|+.|+++.+.|++... .....-...+.|..++|
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~----------~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS----------NSGKEWKFDGEVEKVAW 337 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc----------ccCceEEeccceEEEEe
Confidence 99999999999999999999999999999998899999999999999998532 11111223466888999
Q ss_pred cCCC-CEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCCce--EEEEeec
Q 005254 503 APND-SLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSC--LKTFEGH 577 (706)
Q Consensus 503 s~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~ 577 (706)
.|.. ..++++..||+++-+|++.. +++.+++.|.++|.++++++.- .+|++++.|+.+++|++..... +..-...
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~ 417 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK 417 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc
Confidence 8854 56778889999999999876 8999999999999999999854 5789999999999999865433 2221112
Q ss_pred ccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCeEEE
Q 005254 578 TSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 578 ~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+...|.++.|+-. .|+.|+..+.++|||+.+...+.
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 23456667777654 57888888899999998876553
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-22 Score=173.75 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=181.6
Q ss_pred CCCEEEEeeCC-eEEEEEccCCe---EEEe------------------ecCCCccEEEEEEccCC-CEEEEEeccCeEEE
Q 005254 30 DGSFIACACGE-SINIVDLSNAS---IKST------------------IEGGSDTITALALSPDD-KLLFSSGHSREIRV 86 (706)
Q Consensus 30 dg~~l~~~~~~-~i~i~d~~~~~---~~~~------------------l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~i 86 (706)
-|+++|.|+-+ .|.|||+.=.. +... -++|+..|.+|+|..+- ..||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 57899999988 89999984211 1111 23688899999998865 67899999999999
Q ss_pred EECCCCeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 87 WDLSTLKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|.+.|.+........-...+.|..++|.|... ..++++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-NSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-eeEEEec
Confidence 999999999999999999999999994 67899999999999999985333322223678899999999744 5678889
Q ss_pred cCCeEEEEECCCC-eeEEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 166 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
.||+|+-+|++.. +++.+++.|.++|.++++++.- .++++++.++.|++|++......................
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~---- 425 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA---- 425 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc----
Confidence 9999999999875 8999999999999999998754 478889999999999997655433322222111111111
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
........++.||..+.+++||+.+.
T Consensus 426 ---------------~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 426 ---------------LDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ---------------cCCCcceEEEecCccceEEEeecccC
Confidence 11122347889999999999998765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=163.48 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=133.1
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
..|||+|+++|+...-.+.|.|..+-+..+.+.. -+.|.-+.|+.|..+++. +..++.|.+|++...+-...+.....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 6799999999999999999999998887655443 467888999999877765 46799999999999998899998889
Q ss_pred CeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe---EEEEECCCCe
Q 005254 104 PAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT---VRVWDLLAKK 179 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~ 179 (706)
++.++.|||||+.+. +..-+-.|.+|.+.+.+.... +..+..+..++|+|||+. .+..+.-.. +.+..-..-.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f--~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQF--CAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCce--eeeeecccHHHHHHHHhhHHHH
Confidence 999999999996554 555688999999988775543 334566799999999986 444443211 1111111223
Q ss_pred eEEEeecccceEEEEEEecCCCEEEE
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
.++.+....-..+.+.|+|||..|++
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laV 195 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAV 195 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEE
Confidence 44445555567788999999876654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=154.48 Aligned_cols=282 Identities=18% Similarity=0.290 Sum_probs=205.3
Q ss_pred eEEEEECCCCCEEEEecCCCcEEEEECCCC--------e----EEEEee-CCCCcEEEEEEcC-----CCCceEEEEEec
Q 005254 105 AIGMACHPSGGLLATAGADRKVLVWDVDGG--------F----CTHYFK-GHKGVVSSILFHP-----DTDKSLLFSGSD 166 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--------~----~~~~~~-~~~~~v~~~~~~~-----~~~~~~l~~~~~ 166 (706)
...+.|||||.-|++-+.|..+.+|++... . ....++ .....|...+|-+ +-+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346789999999999999999999998421 0 011111 1345577777742 224456899999
Q ss_pred CCeEEEEECCCCeeEEEeec--ccc---eEEEEEEecCCCEEEEEeCCCEEEEEeCC-CCcceeeecCcceeeeEEeeCC
Q 005254 167 DATVRVWDLLAKKCVATLDK--HFS---RVTSMAITSDGSTLISAGRDKVVNLWDLR-DYSCKLTVPTYEMVEAVCAIPP 240 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (706)
+.-|++||.-+|+....++. |.. ...+++|+|||..|++|. ...|+++|+. .++.....+...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~---------- 200 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT---------- 200 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh----------
Confidence 99999999999998877653 333 456899999999988775 6789999983 322111100000
Q ss_pred CCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeE
Q 005254 241 GSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL 320 (706)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 320 (706)
T Consensus 201 -------------------------------------------------------------------------------- 200 (406)
T KOG2919|consen 201 -------------------------------------------------------------------------------- 200 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEE
Q 005254 321 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL 400 (706)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~ 400 (706)
.--.+..+.+.
T Consensus 201 ---------------------------------------------------------------------~~k~gq~giis 211 (406)
T KOG2919|consen 201 ---------------------------------------------------------------------KGKFGQKGIIS 211 (406)
T ss_pred ---------------------------------------------------------------------cccccccceee
Confidence 00112334455
Q ss_pred EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCC
Q 005254 401 CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 401 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~ 479 (706)
|++ ++|-....++.|+...++-|+.-..+.++..+.+|.+.|+.+.|.++|. .|++|+ .+-.|..||++.....
T Consensus 212 c~a--~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~p-- 286 (406)
T KOG2919|consen 212 CFA--FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDP-- 286 (406)
T ss_pred eee--ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccch--
Confidence 666 7777776689999999999999999999999999999999999999998 566665 4789999999875321
Q ss_pred cccccceeEEEeecCc---ceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 480 QPMNLKAKAVVAAHGK---DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
...+..|.. .-.-....|++++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++++++
T Consensus 287 -------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 287 -------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred -------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 111222211 122356678999999999999999999998 677888888999999999999988888877
Q ss_pred CCC
Q 005254 556 GDK 558 (706)
Q Consensus 556 ~dg 558 (706)
...
T Consensus 360 Gqr 362 (406)
T KOG2919|consen 360 GQR 362 (406)
T ss_pred Cce
Confidence 653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=197.10 Aligned_cols=246 Identities=22% Similarity=0.360 Sum_probs=200.7
Q ss_pred eEEEeeeeeecCCCE---EEEEeeCCCcEEEEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEE
Q 005254 398 IVLCLDTCALSSGKI---LIVTGSKDNSVRLWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 468 (706)
....++|+ +.+.. +++.|.+||.|.+||...- ..+.....|.+.|..+.|++...++|++|+.||.|.|
T Consensus 66 rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 66 RFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 44556633 33333 5899999999999997652 3445667899999999999999999999999999999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCCCccEEEEEeecCC--cEEEEEEc
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR--GIWSVEFS 545 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~s 545 (706)
||+.......... .......|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.. .+..++|+
T Consensus 144 WDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred eccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 9998754322111 2234567999999874 56788999999999999999988888876655 47789999
Q ss_pred cCCC-EEEEecCCC---cEEEEEcCCC-ceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 546 PVDQ-VVITASGDK---TIKIWSISDG-SCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 546 ~~~~-~l~~~~~dg---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
|+.. .|++++.|. .|.+||++.. ..++++++|...|.++.|++.+ ++|++++.|+.|.+|+..+++.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 9863 566666554 5999998754 5678889999999999999966 88999999999999999999999999988
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchh
Q 005254 620 EDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 620 ~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~ 653 (706)
.+.+..+.|.|... .++.++-||.|.||.+....
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 89999999999877 67788999999999987765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=196.00 Aligned_cols=283 Identities=23% Similarity=0.379 Sum_probs=218.3
Q ss_pred ceEEcCCCC-EEEEeeC-----------CeEEEE--EccCCe----EEEeecCCCccEEEEEEccCCCE----EEEEecc
Q 005254 24 PLVVSSDGS-FIACACG-----------ESINIV--DLSNAS----IKSTIEGGSDTITALALSPDDKL----LFSSGHS 81 (706)
Q Consensus 24 ~~~~s~dg~-~l~~~~~-----------~~i~i~--d~~~~~----~~~~l~~~~~~i~~l~~s~~~~~----l~s~~~d 81 (706)
.+|+||++. ++|+|.. ..+.|| |..+.+ .+..+. -...-+.|+|++.|.. ||.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 589999997 5555421 234444 444443 223333 2456789999998866 8888999
Q ss_pred CeEEEEECCCC------eEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEee--CCCCcEEEEEE
Q 005254 82 REIRVWDLSTL------KCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILF 152 (706)
Q Consensus 82 ~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~ 152 (706)
|.|.+||...- ..+.+...|.+.|..+.|++... +||+|+.||.|.|||+.+.+.-.... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998652 35667788999999999999765 99999999999999998755444332 25678999999
Q ss_pred cCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc--eEEEEEEecCCC-EEEEEeCCC---EEEEEeCCCCcceeee
Q 005254 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGS-TLISAGRDK---VVNLWDLRDYSCKLTV 226 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~~dg---~i~~w~~~~~~~~~~~ 226 (706)
+.. -..+|++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|+.. .|++++.|. .|.+||++.
T Consensus 170 Nrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~------- 241 (1049)
T KOG0307|consen 170 NRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF------- 241 (1049)
T ss_pred chh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc-------
Confidence 876 345799999999999999999888877765544 477899999864 455555443 344555431
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
T Consensus 242 -------------------------------------------------------------------------------- 241 (1049)
T KOG0307|consen 242 -------------------------------------------------------------------------------- 241 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
..
T Consensus 242 ------------------------------------------------------------------------------as 243 (1049)
T KOG0307|consen 242 ------------------------------------------------------------------------------AS 243 (1049)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 11
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
...+.+.+|...+.+++ +.+.+..++++++.|+.|.+|+.++++.+..+......+..+.|.|....++++++-||.|
T Consensus 244 sP~k~~~~H~~Gilsls--Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 244 SPLKILEGHQRGILSLS--WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred Cchhhhcccccceeeec--cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 23346678999999999 6677877799999999999999999999999999899999999999988899999999999
Q ss_pred EEEEecCCC
Q 005254 467 KVWSFDGLS 475 (706)
Q Consensus 467 ~i~~~~~~~ 475 (706)
.||.+....
T Consensus 322 ~I~sl~~~~ 330 (1049)
T KOG0307|consen 322 SIYSLQGTD 330 (1049)
T ss_pred eeeeeecCC
Confidence 999998765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-21 Score=156.31 Aligned_cols=289 Identities=16% Similarity=0.238 Sum_probs=201.6
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+.++...+.++.|-. +.+|..+...|.+.+|++.+......+. .+...++.+. ..|+ .. +.+-+.|+.+.+|+
T Consensus 10 LRp~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq--~~p~-d~-l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQ--SIPN-DS-LDTQGRDPLLILWT 83 (323)
T ss_pred eccccchheehhhcc--chhhhcccccceEEEEEeecCccchhhhhhccceeecee--ecCC-cc-hhhcCCCceEEEEE
Confidence 336777888888853 4459999999999999999999888888 5667788876 4554 44 88999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEEEEEecCCCC----CCCcccc-cceeEEEeecCcceEEEE
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSD----DAEQPMN-LKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~i~~~~ 501 (706)
+.-+..+.. |.-.+.++-|.+. -+...+... ..-.++-+.... +...... ...........+.+.+..
T Consensus 84 ia~s~~i~i---~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 84 IAYSAFISI---HSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred ccCcceEEE---eeeeccccccccc---eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 987654433 3334444444432 111111111 111111111100 0000000 000011112334456665
Q ss_pred EcC-CC--CEEEEeeCCCcEEEEeCCCccEEEE----------EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 502 VAP-ND--SLVCTGSQDRTACVWRLPDLVSVVT----------FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 502 ~s~-~~--~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
+.. ++ -+|++|.++|.+.+||+.++..+.. ...|..+|.++.+.+.-..=++|+.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 433 22 3667888999999999999844443 3458999999999987777788888888999988643
Q ss_pred --ce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 569 --SC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 569 --~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
.+ ..++.-..-.+..+.+-||++.+|+++.|+.|+||..++.+++..+..|.+.|++++|+|+...+++++.|+.|
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 22 22333334568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEC
Q 005254 645 NLWHD 649 (706)
Q Consensus 645 ~vw~~ 649 (706)
.+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-19 Score=163.48 Aligned_cols=440 Identities=13% Similarity=0.161 Sum_probs=270.8
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEE
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 110 (706)
..++++.+++.+.|.+ +.++..+.++.|.+.|.|-.|+|||.-|+++++||.|++|. .+|-+..++.....+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 3456666667888887 67888889999999999999999999999999999999998 566666666667889999999
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce
Q 005254 111 HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR 190 (706)
Q Consensus 111 s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (706)
.|+..-++.+. .+.+.|=.+.-...+-..+.|.+-|.++.|++..+. +++|++|-..++||. .|..+..-..|..+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~l--I~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNI--IASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccc--eeecCCceeEEeecc-cCcccccCChhccc
Confidence 99988777654 467888888777777888999999999999997765 999999999999996 67777777889999
Q ss_pred EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 191 VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 191 v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
|++++|.|+ +.++.++ -+++++=..
T Consensus 230 ITSva~npd-~~~~v~S-~nt~R~~~p----------------------------------------------------- 254 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWS-YNTARFSSP----------------------------------------------------- 254 (737)
T ss_pred eeeeeeccc-cceeeee-eeeeeecCC-----------------------------------------------------
Confidence 999999999 5455544 344442111
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
..+.+..+.++++|..+.+++..|.+.+-...+..-.
T Consensus 255 --------------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~----------- 291 (737)
T KOG1524|consen 255 --------------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV----------- 291 (737)
T ss_pred --------------------------------CccceEEEEEcCCCceeeccccCceEEEeeeehhhhh-----------
Confidence 1234677788899999999999988876554432110
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.+..=++......|.+-|+.++.+ ..+.... .+.... -....++++. ...+++|.-..
T Consensus 292 --------------~~n~~~t~~~r~~I~vrdV~~~v~-d~LE~p~-rv~k~s----L~Y~hLvvaT--s~qvyiys~kn 349 (737)
T KOG1524|consen 292 --------------SGNLKATSKSRKSITVRDVATGVQ-DILEFPQ-RVVKFS----LGYGHLVVAT--SLQVYIYSEKN 349 (737)
T ss_pred --------------hccceeEeeccceEEeehhhhhHH-HHhhCcc-ceeeee----eceeEEEEEe--ccEEEEEecCC
Confidence 112223333445566666655443 1222222 222221 1222322222 23566665444
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
......+.+....+.-+.-.. +.+++ ....++.+|..+......... +......+ +. ..+.+. ...|+
T Consensus 350 wntpiiidgre~tr~lieq~e--k~fli--~dgsSi~lytyegR~~~np~~-Pg~~~dlL--~~---rtlsLa--ndtLa 417 (737)
T KOG1524|consen 350 WNTPIIIDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEGRLHLNPRY-PGSQIDLL--TW---RTLSLA--NDTLA 417 (737)
T ss_pred ccCcEEEeccccchhHhhhhh--hheEE--ecCcEEEEEEecCceecCCCC-CCcccccc--cc---eeeecc--cceEE
Confidence 322222222222221111111 11222 223355666554331100000 00000000 00 122222 22444
Q ss_pred Eee--CCCcEEEEeC-CCccEEEE--EeecCCcEEEEEEcc----CCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 511 TGS--QDRTACVWRL-PDLVSVVT--FRGHKRGIWSVEFSP----VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 511 ~~~--~dg~i~i~d~-~~~~~~~~--~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.-. ....+.+||. .+++.... +-.|...|..++... +.+.++.-...+.+.|=.+++...-..+..-..-+
T Consensus 418 ird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmV 497 (737)
T KOG1524|consen 418 IRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMV 497 (737)
T ss_pred eecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhh
Confidence 432 3345788888 66665442 223677777676654 44566666677777776655432222222233467
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..++|+.. .-+++|-.|+.+.||-..+
T Consensus 498 htLawndt-tNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 498 HTLAWNDT-TNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred hhhhhccc-cceeeeeccceEEEEEcCC
Confidence 77888754 4577788999999998754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=188.23 Aligned_cols=283 Identities=20% Similarity=0.328 Sum_probs=224.1
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
+..|.||..+|.|..|...|.++++|++|..++||.++++.++....||.+.|+.++.+.++-++|+++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-----ecccceEEEEEEecCCCEEEEEe
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
++.++..+.+|++.|++++|+| ..+.+.||++++||.+ ....... .....-+.++.|...+...++++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCc------cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9999999999999999999999 4588899999999987 1111111 01224566666777777788888
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.|+.-..|.+........ ...+++.
T Consensus 336 ~d~ea~n~e~~~l~~~~~--------------------------------------~lif~t~----------------- 360 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRSN--------------------------------------LLIFVTR----------------- 360 (1113)
T ss_pred CCcccccchhhHhhhhcc--------------------------------------ceEEEec-----------------
Confidence 887766665432110000 0000000
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
..+...
T Consensus 361 --------------------------------------------------------------------------ssd~~~ 366 (1113)
T KOG0644|consen 361 --------------------------------------------------------------------------SSDLSS 366 (1113)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 001123
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+.+++-.+-.+.+|++.++.....+.+|...+..++ +.|.+..+..+++.||...|||+-.+..++.+....+.+...
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence 445555567788999999999999999999999999 899999888899999999999999998888776667788888
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
+|+++|. .++....-|.++|.....+
T Consensus 445 kFSqdgt-s~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 445 KFSQDGT-SIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred ccCCCCc-eEecCCCCCceEEeccCCC
Confidence 9999988 5666666788888766544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=156.48 Aligned_cols=275 Identities=18% Similarity=0.270 Sum_probs=198.1
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC-CCEEEEEeeCCCcEEEEeCCCceEEEEEe--CCC-
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGVGT--GHM- 441 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~- 441 (706)
+..++++...|.+++||..+++.+..+.++...+..+. +... ....+.+++.||+|++||++.......+. .+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vr--f~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVR--FISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceE--EecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 36788999999999999999999999999998888887 4442 55569999999999999999876554433 333
Q ss_pred cCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCC
Q 005254 442 GAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR 516 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg 516 (706)
.+..+++..-.++ ++++|. .+-.+.+||++..... .......|...|+++.|+| +.++|++|+.||
T Consensus 118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~--------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQL--------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccch--------hhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 3555666554444 666664 4678999999875321 3344567999999999999 558999999999
Q ss_pred cEEEEeCCCccE---EEEEeecCCcEEEEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeecc------------cC
Q 005254 517 TACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGHT------------SS 580 (706)
Q Consensus 517 ~i~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~ 580 (706)
-|.+||++.... +...-.|...|..+.|..++ +.+.+-+......+|+++.+.+...+.... .-
T Consensus 189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 999999976522 22223477889999999876 458888889999999999887655443221 01
Q ss_pred EEEEEEEe-CCCEEEEEeC-CCCEEEEECC---C---CeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 581 VLRASFLT-RGAQIVSCGA-DGLVKLWTVR---T---GECIATYDK-HEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 581 i~~~~~s~-~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+.. ..+| ++...+.++. -+...++-+. + .+.+..+.+ |...|.++.|...+.++.|||+||.+.+|..+.
T Consensus 269 ~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 269 VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 111 1122 3344444444 4555555443 2 334556665 777889999988899999999999999999744
Q ss_pred h
Q 005254 652 A 652 (706)
Q Consensus 652 ~ 652 (706)
.
T Consensus 348 a 348 (376)
T KOG1188|consen 348 A 348 (376)
T ss_pred c
Confidence 3
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=163.91 Aligned_cols=127 Identities=27% Similarity=0.454 Sum_probs=108.9
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.+...+.||.+.|+++.|+.+|.+|++|++|-.+.|||.-..++++.+. +|...|.++.|.|.....++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3455789999999999999999999999999999999999888887764 799999999999998888999999999999
Q ss_pred EEECCCC----------eeEEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCC
Q 005254 172 VWDLLAK----------KCVATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 172 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~ 219 (706)
++|+... +....+..|...|..++-.|++ ..+.++++||+++-+|++.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999742 2334456688888888888887 6778888888888888764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=154.63 Aligned_cols=302 Identities=18% Similarity=0.256 Sum_probs=216.3
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC------CeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------GFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+.+|.+.|.++.||.++++||+|+.|..+++|+++. .+++.... .|...|.|++|...... +++|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~--~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRF--LYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCee--EecCCCcce
Confidence 3567999999999999999999999999999999853 34554433 36689999999875444 999999999
Q ss_pred EEEEECCCCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccc
Q 005254 170 VRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (706)
|...|+++.+.+..+.. ..+.|..|..+|..+.+++.+.++.|.+||.+.......+ +
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~--------~------------ 188 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL--------V------------ 188 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce--------e------------
Confidence 99999999998877642 3358999999999999999999999999998754311000 0
Q ss_pred cccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCc
Q 005254 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (706)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (609)
T KOG4227|consen 189 -------------------------------------------------------------------------------- 188 (609)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC-C---cc-eEEEe
Q 005254 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-H---SE-IVLCL 402 (706)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~---~~-~i~~~ 402 (706)
.+.........+.|.|....++++....+.+.+||.........-.+ . .. ...-+
T Consensus 189 --------------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 189 --------------------LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWM 248 (609)
T ss_pred --------------------eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhh
Confidence 00011223455667778888999999999999999875543211111 1 11 10012
Q ss_pred eeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-------CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 403 DTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 403 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
...++|.+.. +++--....-.+||+.+.++......| ...+.+++|..+. -+++|+.+-.|++|.+....
T Consensus 249 ~~~~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 249 GSLWSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred heeeCCCCCe-ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCc
Confidence 2227888887 555444555667787764433322222 2356678888774 49999999999999997643
Q ss_pred CCCC-------------cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 476 DDAE-------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 476 ~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
...- ...-......+.+|..-+..+.|+|-..+|++.+..+.++||.-
T Consensus 326 ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 326 DSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 2111 11223456678999999999999999999999999999999964
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=138.10 Aligned_cols=163 Identities=20% Similarity=0.298 Sum_probs=130.8
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCC----------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLST----------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
..|.+-+++|.+++|++|..+|.|.+..+++ ..++...++|.++|..++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3456668999999999999999999998863 23455568899999999999 45677776 59999999
Q ss_pred CCCCeE------EEEe--eC-----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 131 VDGGFC------THYF--KG-----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 131 ~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
+..... +... .- .-..|+++...|..+. ++.++.|+.++-||+++|+..+.+++|.+.+.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 864321 1111 11 2246899999987766 7777799999999999999999999999999999886
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.....+++|++||++++||.++++.+..+..
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEecc
Confidence 6666799999999999999999887776654
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=154.68 Aligned_cols=257 Identities=21% Similarity=0.282 Sum_probs=191.3
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeE
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI 466 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 466 (706)
..++..++ +..+....+++|+.|..|++|-+..+ +.+..+..|...|+.+.|+|+|. +|++|+.+|.+
T Consensus 13 ~~pv~s~d--fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVD--FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEV 89 (434)
T ss_pred CCceEEEE--eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceE
Confidence 34566666 65666545999999999999976542 23345678999999999999998 99999999999
Q ss_pred EEEEecCCCC------CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEE
Q 005254 467 KVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW 540 (706)
Q Consensus 467 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 540 (706)
.+|....... ....+..+.......+|...|..++|+|++.++++++.|..+++||+..|.....+..|..-+.
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 9998773211 1112334556677888999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-------------------eccc----CEEEEEEEeCCCEEEE--
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------------GHTS----SVLRASFLTRGAQIVS-- 595 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~----~i~~~~~s~~~~~l~~-- 595 (706)
.++|.|-++++++-+.|...+++.+...+.+.... .|.. -...++|+|||.+|++
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999999999988888877776664332221111 0110 1122344444433322
Q ss_pred -------------------------------------------------------------------EeCCCCEEEEECC
Q 005254 596 -------------------------------------------------------------------CGADGLVKLWTVR 608 (706)
Q Consensus 596 -------------------------------------------------------------------~~~dg~i~iwd~~ 608 (706)
......|++||.+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 1223456777776
Q ss_pred CCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 609 TGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 609 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+-+++.... -|-..|+.++|++||..|+..+.||-..+-.+++.+.-
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 666666554 58889999999999999999999999888877766554
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-19 Score=141.18 Aligned_cols=237 Identities=16% Similarity=0.247 Sum_probs=177.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC----------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
.+|.++. +++|..+|.|.++.+++ ...+...++|.+++..++|..+ +|++++. |.|+-|..+...
T Consensus 18 ~sp~~~~-l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 18 ISPSKQY-LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hCCcceE-EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccC-ceEEEeeehhhh
Confidence 5566666 99999999999998653 2234445899999999999955 6777665 999999887543
Q ss_pred CCCCccccc--ce-eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 476 DDAEQPMNL--KA-KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 476 ~~~~~~~~~--~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
........+ +. ...-...-..|+++-+.|..+-++.++.|+.++-||+++|+....+++|.+-|.++.--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 211111000 00 011112234689999999887777777999999999999999999999999999999866666799
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecc----------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHT----------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (706)
+|++||++|+||.++++++..+.... ..|-+++- +..+|++|+. -.+.+|++++.++...+.- ...
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpi-pa~ 248 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPI-PAR 248 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEec-ccc
Confidence 99999999999999999988776422 23444444 5558888764 5799999999998887753 557
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 623 IWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+..+.| +...++++++.+.+.-|.+....
T Consensus 249 v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 249 VHLVDF--VDDCVLIGGEGNHVQSYTLNGVL 277 (325)
T ss_pred eeEeee--ecceEEEeccccceeeeeeccEE
Confidence 788888 45568889988899999886543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=169.44 Aligned_cols=261 Identities=19% Similarity=0.233 Sum_probs=197.3
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC--------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.+..|...+..+. +.+-... +++++.||.+.+|+++. -+++..+.+|.++|.|+++.+++. .+++|+.
T Consensus 289 tl~s~~d~ir~l~--~~~sep~-lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~ 364 (577)
T KOG0642|consen 289 TLRSHDDCIRALA--FHPSEPV-LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGI 364 (577)
T ss_pred eeecchhhhhhhh--cCCCCCe-EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeecc
Confidence 5566777777775 5555555 99999999999999932 256778999999999999999988 8999999
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--CcEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--RGIW 540 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~ 540 (706)
||+|+.|++..................+.+|...+..+++|+....|++++.||+++.|+.....+ ..+.... +-.+
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999998844332222223335567889999999999999999999999999999999877666 3333322 2234
Q ss_pred EEEEccCC-CEEEEecCCCcEEEEEcCCCceEEEEeec-------ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 541 SVEFSPVD-QVVITASGDKTIKIWSISDGSCLKTFEGH-------TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 541 ~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
++.+-... ...++...-+.-.++++.....+..+... ...+..+.+.|.+.+.+++.+|+.|+++|..++++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 45554322 22223233333334444444444444321 23567788899999999999999999999999999
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 613 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
+.....|...++++++.|+|.+|++++.||.+++|++.......
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999999999999999997655443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=148.13 Aligned_cols=268 Identities=25% Similarity=0.349 Sum_probs=198.7
Q ss_pred CcEEEEeCCCcee---eEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-------CcEEEEeCCCc---------eEEEE
Q 005254 376 EQVQVYDLSSMSC---SYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-------NSVRLWDSESR---------CCVGV 436 (706)
Q Consensus 376 ~~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~---------~~~~~ 436 (706)
++|.+.++..... ...+..+.+.|..++ .+|.+..+|+++..+ -...+|.+... +++..
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 5566655544322 235666788899998 888888878887653 24678987543 22333
Q ss_pred Ee-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC--CCCEEEEee
Q 005254 437 GT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP--NDSLVCTGS 513 (706)
Q Consensus 437 ~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~ 513 (706)
+. .+-+.+.++.|.|++. .+++-. |..|.+|++.......... .......+....++-+|+| ||+.+++.+
T Consensus 118 Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev----~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEV----LSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred CCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheee----cccccccccceecccccCCCCccceEEEeC
Confidence 33 4567899999999877 455444 8899999998775421111 1111122455678889998 888888764
Q ss_pred CCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCC-EEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEeC-
Q 005254 514 QDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR- 589 (706)
Q Consensus 514 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~- 589 (706)
|+++..||+++.+....+. .|...|..+.|+|+.+ +|++++.||.|++||.+.. .++.++.+|...+.++.|.|.
T Consensus 192 -d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred -CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence 7899999999988777665 4889999999999865 5889999999999999765 568999999999999999984
Q ss_pred CCEEEEEeCCCCEEEEECCC-----------------------------CeEEEEeccCCCcEEEEEEcCCCCE-EEEEe
Q 005254 590 GAQIVSCGADGLVKLWTVRT-----------------------------GECIATYDKHEDKIWALAVGKKTEM-FATGG 639 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~ 639 (706)
.+++++|+.|..|.+|...+ ...+.++..|.+.|.+++||.-+.+ +++.+
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 46789999999999997631 0134466789999999999987775 56789
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
.||.+.|=++...
T Consensus 351 YDGRviIs~V~r~ 363 (370)
T KOG1007|consen 351 YDGRVIISSVPRF 363 (370)
T ss_pred cCceEEeecCChh
Confidence 9999998777543
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-21 Score=181.47 Aligned_cols=292 Identities=16% Similarity=0.254 Sum_probs=212.7
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
+.+..+.+|...|.|+.|...|.++++|+.|..++||..+++.++..+.||.+.|+.++.+.+.- ++++++.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~--~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNT--MIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhh--hhhhcccCceEEE
Confidence 34455678999999999999999999999999999999999999999999999999999987544 4999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
|.+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+ .......+.+... ++
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~-------~~----------- 315 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKF-------TE----------- 315 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCc-------cc-----------
Confidence 9999999999999999999999999964 67789999999987 1111111100000 00
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
..-+.++.+.
T Consensus 316 ---------------------------------------------------~~~~~s~~~~------------------- 325 (1113)
T KOG0644|consen 316 ---------------------------------------------------KDLVDSILFE------------------- 325 (1113)
T ss_pred ---------------------------------------------------ccceeeeecc-------------------
Confidence 0000011111
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
.+...+++++.++.-..|...... .+...+.-+. ...+-..
T Consensus 326 -------------------------------~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t--~ssd~~~ 366 (1113)
T KOG0644|consen 326 -------------------------------NNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVT--RSSDLSS 366 (1113)
T ss_pred -------------------------------ccccccccccCCcccccchhhHhh------hhccceEEEe--ccccccc
Confidence 133344455555544444433211 1111111111 2222223
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+.+++-.+-.+.+|++.++.....+.+|...+..+.++|-+..+..+++.||...|||+-.+.. ......+
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---------ik~y~~g 437 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---------IKHYFIG 437 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---------ceeeecc
Confidence 4667777888999999999999999999999999999999888889999999999999987642 1122233
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
...+..-+||+||..++....-|.++|.....++.
T Consensus 438 -h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 438 -HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred -cceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 45567789999999999998899999988655543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=167.63 Aligned_cols=278 Identities=18% Similarity=0.229 Sum_probs=207.8
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE--EE----EEeCCCcCeEEEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VG----VGTGHMGAVGAVAF 449 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~----~~~~~~~~v~~~~~ 449 (706)
+.+.+|++...............+.++. +.|....+++.|..+|.|.+||+..+.. .. ....|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 3789999998855555555667888888 8888888899999999999999987765 22 23468889999999
Q ss_pred ecCCC-eEEEEecCCCeEEEEEecCCCCCCCccccccee--EEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 005254 450 SKKLQ-NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 450 ~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~ 525 (706)
..+-. .-+++++.||.|..|+++......+........ .........+++++|.+ +-..+++|+++|.|.--+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76433 247888889999999887654322211111111 11112345688999988 456788999999988733222
Q ss_pred ---c-----cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCceEEEEeecccCEEEEEEEeCCC-EEEE
Q 005254 526 ---L-----VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGA-QIVS 595 (706)
Q Consensus 526 ---~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~ 595 (706)
. +....+..|.++|.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||-.. .+++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 2 2233556689999999999987766655569999999987 6777888887888899999999754 5677
Q ss_pred EeCCCCEEEEECCCC--eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 596 CGADGLVKLWTVRTG--ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
+..||.|.+||+... +++.....+....+.+.|+++|+.|++|...|.+.+|++......
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~ 521 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAV 521 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhc
Confidence 888999999999643 456666666667778889999999999999999999999765543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-18 Score=162.03 Aligned_cols=455 Identities=13% Similarity=0.115 Sum_probs=289.3
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCC------------CEEEEecCCCcEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG------------GLLATAGADRKVL 127 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~d~~i~ 127 (706)
...-.++.|+|.| ++|-|+ ...|.+-|..+.+.+..+..|...|+.+.|.|-. -+||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3345788999998 455555 4489999999999999999999999999998721 2577888889999
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec-CCCEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 204 (706)
+||...+..+..+..|..++..++|-+.. .+.+|+.-....++.+|+..+|+.+...........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 99999999999999999999999997642 334677777788999999999999887766666777888888 556777
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
..+..|.+.+-+.-..... ..+...+....+.+....
T Consensus 173 ~l~s~g~vl~~~~l~~sep-----~~pgk~~qI~sd~Sdl~~-------------------------------------- 209 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEP-----DVPGKEFQITSDHSDLAH-------------------------------------- 209 (1062)
T ss_pred EEccCceEEEEeccCCCCC-----CCCceeEEEecCccchhh--------------------------------------
Confidence 7777887776654221100 000000000000000000
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
....+++. +... ....... +..-...++|+|.
T Consensus 210 --------------------------------lere~at~-------ns~t------s~~~sa~---fity~a~faf~p~ 241 (1062)
T KOG1912|consen 210 --------------------------------LERETATG-------NSTT------STPASAY---FITYCAQFAFSPH 241 (1062)
T ss_pred --------------------------------hhhhhhcc-------cccc------CCCcchh---HHHHHHhhhcChh
Confidence 00000000 0000 0000000 0001223455665
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-------------
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR------------- 431 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------- 431 (706)
-.+.+..... ..+.++|++-..++....-..+.+.-+++...+.... +++...||.+.+|-.+..
T Consensus 242 ~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~-LfclH~nG~ltirvrk~~~~~f~~~~~~l~~ 319 (1062)
T KOG1912|consen 242 WRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA-LFCLHSNGRLTIRVRKEEPTEFKKPNASLSM 319 (1062)
T ss_pred hhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcce-EEEEecCCeEEEEEeeccCccccccchhhcc
Confidence 5555554444 7899999998888887777777666666545555555 888999999999965431
Q ss_pred ---eEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---------cccc------------cce
Q 005254 432 ---CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---------QPMN------------LKA 486 (706)
Q Consensus 432 ---~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------~~~~------------~~~ 486 (706)
+....+. .....+...+..|..+..++.--.+|.+.+|.+.++..... .+.. ...
T Consensus 320 dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~ 399 (1062)
T KOG1912|consen 320 DLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLIS 399 (1062)
T ss_pred ccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccc
Confidence 1111111 11112222333344343455556678888898875421110 0000 000
Q ss_pred eEEEeecCcceEEEEEcC-----------CC-------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 487 KAVVAAHGKDINSLAVAP-----------ND-------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~-----------~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
.....+|....++....| .+ .++|.|...|+|.++|+.++.....+..|...|.++.|-...
T Consensus 400 LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 400 LSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred hhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence 011123444444443332 12 378899999999999999999999999999999999998765
Q ss_pred CEEEEec---------CCCcEEEEEcCCCceE--EEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 549 QVVITAS---------GDKTIKIWSISDGSCL--KTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 549 ~~l~~~~---------~dg~i~iwd~~~~~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.++-.+. .-+.+.+-|+++|... +.+++ ...+|+.+..|..|+||+..-.|.-+.+||+++
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 5443222 2245778888888443 32232 456899999999999999999999999999964
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=152.37 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=155.6
Q ss_pred CEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEcc--CCCEEEEEeccCeEEEEECCCCeEEEEe--eccC-CCe
Q 005254 32 SFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSP--DDKLLFSSGHSREIRVWDLSTLKCLRSW--KGHD-GPA 105 (706)
Q Consensus 32 ~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~-~~v 105 (706)
..+|++..+ .|++||..+++.+..+++++..++.++|.. ....+.+|+.||+|++||+.+......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 456666554 999999999999999999999999999987 4577889999999999999887665544 4444 567
Q ss_pred EEEEECCCCCEEEEec----CCCcEEEEECCCCeE-EEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 106 IGMACHPSGGLLATAG----ADRKVLVWDVDGGFC-THY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.+++..-.++.+++|. .+-.|.+||++..+. +.. ...|...|++++|+|. +.++|++|+.||.|.++|+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCc
Confidence 7788777888888885 467899999987765 433 4579999999999997 56789999999999999986543
Q ss_pred e---EEEeecccceEEEEEEecCC-CEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 180 C---VATLDKHFSRVTSMAITSDG-STLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 180 ~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
. +...-.|...|.++.|..++ +.+.+.+......+|+++.+.....++
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 1 22223467789999999876 468888999999999999887554443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=154.74 Aligned_cols=209 Identities=18% Similarity=0.312 Sum_probs=164.4
Q ss_pred EeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCC-CEEEEecCCC
Q 005254 54 STIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSG-GLLATAGADR 124 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 124 (706)
-.+.||.++|..++|+| +...||+|++|-+|.||++..+ +++..+.+|...|..++|+|.. +.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35678999999999999 5578999999999999999654 4677889999999999999964 5788999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc-eEEEEEEecCCCEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTL 203 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l 203 (706)
+|.+||+.+|+.+..+. |...|.+++|+.+|.. +++.+.|..|+|||.++++.+..-.+|.+ .-....|..+|..+
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~--l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL--LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCce--eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999988888 9999999999999887 99999999999999999999988878876 34556688888844
Q ss_pred EEEe---CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 204 ISAG---RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 204 ~~~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
.+|- .+..+-+||....+.-..+..-.....+. ......+.+...++|-.|+.||.|.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-------------------~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-------------------LPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceE-------------------EeeecCCCCEEEEEecCCcceEEEE
Confidence 4442 46789999987655332221111111111 1112233456788999999999999
Q ss_pred CCCC
Q 005254 281 ADSA 284 (706)
Q Consensus 281 ~~~~ 284 (706)
+...
T Consensus 293 it~d 296 (472)
T KOG0303|consen 293 ITNE 296 (472)
T ss_pred ecCC
Confidence 8766
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=166.45 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=203.3
Q ss_pred CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee--EE----EeecccceEEEEEEe
Q 005254 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VA----TLDKHFSRVTSMAIT 197 (706)
Q Consensus 124 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~ 197 (706)
+.+.+|++.........-.....|+++.|+|. +..+++.|..+|.|.+||++.+.. .. ....|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876333333336789999999997 456799999999999999987654 22 224588899999997
Q ss_pred cCCC--EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 198 SDGS--TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 198 ~~~~--~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
.+.. -+++++.||.|..|+++...........+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~------------------------------------------ 338 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK------------------------------------------ 338 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhccccccc------------------------------------------
Confidence 6544 48888899999999776433211110000000
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
...........
T Consensus 339 ---------------------------------------------------------------------~~~~~~~~~~~ 349 (555)
T KOG1587|consen 339 ---------------------------------------------------------------------HKGQQSSKAVG 349 (555)
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 00001112345
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+..+.|.+.+...+++|+..|.|..-+-.... ....+..|.+++.++. ++|-...++.+++ |.++++|.
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~--~nPF~~k~fls~g-DW~vriWs 426 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVS--RNPFYPKNFLSVG-DWTVRIWS 426 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeee--cCCCccceeeeec-cceeEecc
Confidence 67788888888999999999998884433222 2335567888999998 8888888666666 99999999
Q ss_pred CC-CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 428 SE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 428 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.. ...++..+..+...+++++|||....+++++..||.+.+||+......+. ..........+.+.++++|
T Consensus 427 ~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--------~s~~~~~~~l~~~~~s~~g 498 (555)
T KOG1587|consen 427 EDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--------LSQKVCSPALTRVRWSPNG 498 (555)
T ss_pred ccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--------ccccccccccceeecCCCC
Confidence 88 66777777778888999999999988999999999999999987643332 1122225567788899999
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q 005254 507 SLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~ 525 (706)
+.|++|+..|.+.+|++..
T Consensus 499 ~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 499 KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cEEEEecCCCcEEEEEcCc
Confidence 9999999999999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-16 Score=154.93 Aligned_cols=187 Identities=24% Similarity=0.366 Sum_probs=152.8
Q ss_pred CCCCEEEEe-eCCeEEEEEccCCeEEEeecCCCcc----EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 29 SDGSFIACA-CGESINIVDLSNASIKSTIEGGSDT----ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 29 ~dg~~l~~~-~~~~i~i~d~~~~~~~~~l~~~~~~----i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
-+.+.++.+ +.+.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+...-..-..+.+|.+
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 344455544 4558999999888777666544332 22344677788999999999999999974443346899999
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
.|..+.++.||.++++.++|+++++|++++.+... ..-+|+.+|+.++|.|+ . ++++++|.+.++|+. .++.+.
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~--i~t~gedctcrvW~~-~~~~l~ 251 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R--IITVGEDCTCRVWGV-NGTQLE 251 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e--eEEeccceEEEEEec-ccceeh
Confidence 99999999999999999999999999999988766 56689999999999997 3 999999999999976 556666
Q ss_pred Eeecccc-eEEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 183 TLDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 183 ~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+.+|.+ .+..++..++...+++++.|+.+++|++...
T Consensus 252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 7777764 7899999999999999999999999998654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-17 Score=157.02 Aligned_cols=270 Identities=12% Similarity=0.192 Sum_probs=178.8
Q ss_pred EEEEecCCcEEEEeCCC-ce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-CceE--EEEEeCCCc
Q 005254 369 LAVATNIEQVQVYDLSS-MS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCC--VGVGTGHMG 442 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~ 442 (706)
+++...++.|.+|++.+ ++ ....+.. .+....+. ++|+++.+.+++..++.|.+|++. +++. +.... ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 34446679999999964 32 3334432 23444555 788888855666678899999986 3332 22222 334
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVW 521 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~ 521 (706)
....++++|+++.++++...++.|.+|+++....... ..... .+.....+++++|+++++++++ .++.|.+|
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~------~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA------PIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC------ceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 5678999999985555555689999999964321110 11111 1223467788999999886555 56899999
Q ss_pred eCCCccEEE-------EEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCC--Cc--eEEEEeecc------cCEEE
Q 005254 522 RLPDLVSVV-------TFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD--GS--CLKTFEGHT------SSVLR 583 (706)
Q Consensus 522 d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~i~~ 583 (706)
|+.+...+. ... .......++|+|++++++++.. +++|.+|++.. ++ .+..+..+. .....
T Consensus 154 d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred EECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 997633221 111 2344678999999999988876 89999999973 32 333333211 12335
Q ss_pred EEEEeCCCEEEEEeC-CCCEEEEECCCCe----EEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCc
Q 005254 584 ASFLTRGAQIVSCGA-DGLVKLWTVRTGE----CIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDST 651 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~ 651 (706)
+.++|++++|+++.. ++.|.+|++.... .+..+.. ......+.++|||++|+++.. +++|.+|+++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 889999999998864 6899999986433 2333222 124457899999999998775 89999998853
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=148.25 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=132.6
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC------CCeEEEEee-ccCCCeEEEEECCCCCEEEEecCCCcE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS------TLKCLRSWK-GHDGPAIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~------~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i 126 (706)
+.+.+|.+.|.++.||.++++||+|+.|..+++|+++ +.+++.... .|...|.|++|...+..|.+|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4567899999999999999999999999999999985 345555443 366899999999999999999999999
Q ss_pred EEEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe-eE--EEeecccceEEEEEEecCC-
Q 005254 127 LVWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-CV--ATLDKHFSRVTSMAITSDG- 200 (706)
Q Consensus 127 ~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~~~~~v~~~~~~~~~- 200 (706)
...|+++.+.+..+.. ..+.|..+..+|..+. +++.+.++.|.+||.+... .. ..+.........+.|.|..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~--~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNT--LIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCce--EEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999988877652 2358999999998554 9999999999999987654 21 1122234567778898865
Q ss_pred CEEEEEeCCCEEEEEeCCCC
Q 005254 201 STLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+|++.+..+-+-+||.+..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeEEeccccCCCCceeeccc
Confidence 46677777788999998753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-15 Score=143.37 Aligned_cols=330 Identities=18% Similarity=0.165 Sum_probs=200.4
Q ss_pred CEE-EEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 73 KLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 73 ~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
+++ ++-..++.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++. ......++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 344 3455689999999999999999986655445678999999999999999999999999999999874 44568899
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcce
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCK 223 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~ 223 (706)
+++||+. ++++...++.+.++|.++.+.++.+... ...+.++..++....++..-. .+.|.+.|..+....
T Consensus 85 ~s~DG~~-~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKY-VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTE-EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCE-EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999886 3445567899999999999999887543 235667777777774544443 466666665443211
Q ss_pred eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCC
Q 005254 224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS 303 (706)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (706)
...
T Consensus 164 ~~~----------------------------------------------------------------------------- 166 (369)
T PF02239_consen 164 KVT----------------------------------------------------------------------------- 166 (369)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred cee-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC
Q 005254 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~ 383 (706)
T Consensus 167 -------------------------------------------------------------------------------- 166 (369)
T PF02239_consen 167 -------------------------------------------------------------------------------- 166 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecCCCeEEEE
Q 005254 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 384 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.+.. ........ +.|++++++++...+..+.++|..+++.+..+. .|..+...+ .+|.......+
T Consensus 167 -------~i~~-g~~~~D~~--~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~ 235 (369)
T PF02239_consen 167 -------TIKV-GRFPHDGG--FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT 235 (369)
T ss_dssp -------EEE---TTEEEEE--E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE
T ss_pred -------eecc-cccccccc--cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee
Confidence 0000 00011111 667777766666677788888888887776543 233333333 23332212222
Q ss_pred ec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe----eCCCcEEEEeCCCccEEEEEee
Q 005254 460 GS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----SQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 460 ~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
.. ....+-....... .......++..........+ .-+..+|+++++.+. ...+.|.++|.++.+....+..
T Consensus 236 ~~~~~~~~~~ig~~~v--~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 236 SGLGYFAIPLIGTDPV--SVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EBSSSSEEEEEE--TT--T-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred ccccceecccccCCcc--ccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 21 1222222222111 11122344466666666666 778889999999988 4558899999999988777754
Q ss_pred cC-CcEEEEEEccCCCEEEEecCC--CcEEEEEcCCCceEEEEe
Q 005254 535 HK-RGIWSVEFSPVDQVVITASGD--KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 535 ~~-~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 575 (706)
.. ..+..+.|+++|+.+..+..+ +.|.+||..+.+.+..+.
T Consensus 313 ~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 32 358999999999977665543 369999999999998886
|
... |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=151.05 Aligned_cols=213 Identities=16% Similarity=0.290 Sum_probs=173.9
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeC
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQ 514 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~ 514 (706)
...+|.++|..++|+|-+.+.+++|+.|.+|.+|++........ .......+.+|...|--++|+|- .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC---cccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 35689999999999999888999999999999999987643221 22456778999999999999995 478899999
Q ss_pred CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEEEEEEeCCCEE
Q 005254 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRASFLTRGAQI 593 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 593 (706)
|..|.+|++.+++.+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+.+-.+|.+ .-..+.|..+|..+
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9999999999999999988 999999999999999999999999999999999999998888875 45567888888844
Q ss_pred EEEe---CCCCEEEEECCCCe---EEEEeccCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCchh
Q 005254 594 VSCG---ADGLVKLWTVRTGE---CIATYDKHEDKIWALAVGKKTEMFAT-GGSDALVNLWHDSTAA 653 (706)
Q Consensus 594 ~~~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~ 653 (706)
-+|- .+..+-+||..+-+ .+..+.. .+.|.---+.+|.+++.. |-.|+.|+-|.+..+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4443 36789999876543 3344444 445555557888887654 5569999999998776
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=166.26 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=138.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
|++++.-..|+|||....+.+..+. +....++++.-+....+++++|..||.|++||.+..... ........
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~ 1252 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYRE 1252 (1387)
T ss_pred EEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------ccceeecc
Confidence 3333445567777776665555443 234456666655555569999999999999998865432 24555667
Q ss_pred cCcc--eEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEE--EEEeecC--C-cEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 493 HGKD--INSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSV--VTFRGHK--R-GIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 493 ~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~-~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
|... |..+.+.+.|- .|++|+.+|.|++||++..... ..+..|. + ..+++..+++...+|+|+. +.|+||+
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 7776 99999998775 4999999999999999874222 2222332 3 5999999999999999998 8999999
Q ss_pred cCCCceEEEEee-------cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 565 ISDGSCLKTFEG-------HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 565 ~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+. |+.+..++. ..+.+.+++|+|..-.||+|+.|.+|.||....++
T Consensus 1332 ~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1332 LS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 84 665554442 23568999999998899999999999999876543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=163.11 Aligned_cols=267 Identities=21% Similarity=0.341 Sum_probs=192.3
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--------CCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--------TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
..++..|...|++++|.|....|++++.||.|.+|+++ .-+++.+|++|.++|.|++.+++++.+.+|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34677899999999999999999999999999999993 2368889999999999999999999999999999
Q ss_pred cEEEEECCCC----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec--ccceEE
Q 005254 125 KVLVWDVDGG----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK--HFSRVT 192 (706)
Q Consensus 125 ~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~ 192 (706)
+|+.|++... .....+.||...|+.+++|+..+. |++++.||+++.|+...... .++.. ..+.-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~--Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR--LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc--eeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999966321 234567899999999999998776 99999999999999866555 33322 223344
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
++.+.... ++....+.....+++.+.+....+.... .+.
T Consensus 444 svd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~---------------------------------------s~~ 482 (577)
T KOG0642|consen 444 SVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFE---------------------------------------SSA 482 (577)
T ss_pred eEeeccch--hHhhhhhcccccccchhhhhhhheeecc---------------------------------------ccC
Confidence 45554322 2222223444444444333222211100 000
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
....+.
T Consensus 483 ~~~~~~-------------------------------------------------------------------------- 488 (577)
T KOG0642|consen 483 SPGPRR-------------------------------------------------------------------------- 488 (577)
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+..+.. .++..+.+++..++.|+++|..++..+.....|...+++++ +.+++.. |++++.|+.+++|.+....
T Consensus 489 ~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla--i~~ng~~-l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 489 YPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA--IDPNGPY-LMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee--ecCCCce-EEeecCCceeehhhccchh
Confidence 001111111 23557888888899999999999999999999999999998 8888887 9999999999999998877
Q ss_pred EEEEEeCCC
Q 005254 433 CVGVGTGHM 441 (706)
Q Consensus 433 ~~~~~~~~~ 441 (706)
++.....|.
T Consensus 565 ~~~es~~~r 573 (577)
T KOG0642|consen 565 CVLESTAHR 573 (577)
T ss_pred eeecccccc
Confidence 776655543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=149.04 Aligned_cols=486 Identities=13% Similarity=0.139 Sum_probs=277.9
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccE-EEEEEcc-------CCCEEEEEeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTI-TALALSP-------DDKLLFSSGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i-~~l~~s~-------~~~~l~s~~~d~~i~iwd~~~~~~~ 95 (706)
++.++.....+.++.++.+.+|+-.+...+..+.-...-| +.+-.-+ ....++.++.||.+.|-+ +.++..
T Consensus 19 ~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rVE 97 (737)
T KOG1524|consen 19 CVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARVE 97 (737)
T ss_pred eecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchhh
Confidence 5777888877877777777777654444332222211111 1111111 235788889999999987 677888
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+.+..|.+.+.+-.|+|||.-|+++++||.|++|.-. |-+...+.....+|.|++|.|+++. ++++ ..+.+.+=.+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~-vl~c--~g~h~~IKpL 173 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNS-IVFC--QGGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCc-eEEe--cCCeEEEeec
Confidence 8899999999999999999999999999999999954 4444444557789999999999765 3333 3456777777
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
.....+-..+.|.+-|.++.|++....+++|++|-..++||.........
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S------------------------------ 223 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS------------------------------ 223 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC------------------------------
Confidence 77777777889999999999999999999999999999999654322222
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
..+..+++++++.|+ ..+++++. +.++
T Consensus 224 ---------------------------------------------~~~ey~ITSva~npd-~~~~v~S~-nt~R------ 250 (737)
T KOG1524|consen 224 ---------------------------------------------AAEEYAITSVAFNPE-KDYLLWSY-NTAR------ 250 (737)
T ss_pred ---------------------------------------------Chhccceeeeeeccc-cceeeeee-eeee------
Confidence 223445666666666 22222222 1121
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
......+.|..++|++ ++..+++++..|.+.+--.-..+.. ...+=+
T Consensus 251 ------------~~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A~~ieq~l~--------------------~~n~~~ 297 (737)
T KOG1524|consen 251 ------------FSSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVAYAIEQQLV--------------------SGNLKA 297 (737)
T ss_pred ------------ecCCCccceEEEEEcC-CCceeeccccCceEEEeeeehhhhh--------------------hcccee
Confidence 1122356788888887 7778888888777655322111100 000012
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+......|.+-|+.++.. ..-.....+...+..-. .|+++.. ..+++|.-.... ....+.+...
T Consensus 298 t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y~---hLvvaTs-~qvyiys~knwn----------tpiiidgre~ 361 (737)
T KOG1524|consen 298 TSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGYG---HLVVATS-LQVYIYSEKNWN----------TPIIIDGRED 361 (737)
T ss_pred EeeccceEEeehhhhhHH--HHhhCccceeeeeecee---EEEEEec-cEEEEEecCCcc----------CcEEEecccc
Confidence 223334455555554432 11122344444443221 2333322 345665533221 1111111111
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE-----EEEEEccCCCEEEEe--cCCCcEEEEEc-CC
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI-----WSVEFSPVDQVVITA--SGDKTIKIWSI-SD 567 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~--~~dg~i~iwd~-~~ 567 (706)
.+.-+.-+ ...+++. ..-+|.+|..+ ++.....+.....+ ..+... ...|+.- .....+.++|. .+
T Consensus 362 tr~lieq~-ek~fli~--dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlhlFd~ist 435 (737)
T KOG1524|consen 362 TRNLIEQG-EKYFLIL--DGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLHLFDLIST 435 (737)
T ss_pred chhHhhhh-hhheEEe--cCcEEEEEEec-CceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEEeccCCCC
Confidence 11111111 1112222 22345555442 22221111111100 112222 2233332 23345778887 66
Q ss_pred CceEEE--EeecccCEEEEEEE----eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 568 GSCLKT--FEGHTSSVLRASFL----TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 568 ~~~~~~--~~~~~~~i~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
|+.... +-.|...|..++.. ++++.++.-..++.++|=.+++-..-..+-.-...|..++|+...+ +++|-.|
T Consensus 436 gk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttN-iLcglqD 514 (737)
T KOG1524|consen 436 GKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTN-ILCGLQD 514 (737)
T ss_pred CcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccccc-eeeeecc
Confidence 665421 12266666666654 3556778888888888777654322222223345688899975554 5668889
Q ss_pred CcEEEEECCchh
Q 005254 642 ALVNLWHDSTAA 653 (706)
Q Consensus 642 g~i~vw~~~~~~ 653 (706)
+.+.||-.+...
T Consensus 515 t~fsVWy~pn~v 526 (737)
T KOG1524|consen 515 TCFSVWYYPNEV 526 (737)
T ss_pred ceEEEEEcCCcc
Confidence 999999876643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=156.90 Aligned_cols=166 Identities=22% Similarity=0.407 Sum_probs=136.8
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECC--CCCEEEEecCCCcEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP--SGGLLATAGADRKVLV 128 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v 128 (706)
+.+.|.||++.|+|++|+.+|.+|++|++|-.+.|||.-..++++.+ .+|...|.++.|-| +.+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45788999999999999999999999999999999999988888877 57999999999999 5678899999999999
Q ss_pred EECCCC----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE----------EEeeccc
Q 005254 129 WDVDGG----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV----------ATLDKHF 188 (706)
Q Consensus 129 w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------~~~~~~~ 188 (706)
+|+.+. +....+..|...|..++-.|++. +.+.++++||+|+-+|+++...- ..+...-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999752 34556678999999999999863 46899999999999999763211 1111222
Q ss_pred ceEEEEEEecCC-CEEEEEeCCCEEEEEeCC
Q 005254 189 SRVTSMAITSDG-STLISAGRDKVVNLWDLR 218 (706)
Q Consensus 189 ~~v~~~~~~~~~-~~l~~~~~dg~i~~w~~~ 218 (706)
-...++.++|.. .+|++|+.|-..++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 356788999864 578899999999999953
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-17 Score=136.98 Aligned_cols=282 Identities=22% Similarity=0.326 Sum_probs=200.3
Q ss_pred CCCcEEEEECCCCe--E-EEEeeCCCCcEEEEEEcCCCCceEEEEEecC-------CeEEEEECCCC---------eeEE
Q 005254 122 ADRKVLVWDVDGGF--C-THYFKGHKGVVSSILFHPDTDKSLLFSGSDD-------ATVRVWDLLAK---------KCVA 182 (706)
Q Consensus 122 ~d~~i~vw~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~---------~~~~ 182 (706)
.|+.|.+.+++.+. . ...|..|.+.|+.++-+|.... +|+++..+ -.+.||.+... +++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~-ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQR-ILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCc-eEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 46778777775542 2 2446678999999999997544 56665442 24779987543 2334
Q ss_pred Eee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc-eeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 183 TLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 183 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
.+. .+-+.+.|+.|.|++..+++.. |..|.+|+++.... ...+.....
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s----------------------------- 166 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES----------------------------- 166 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc-----------------------------
Confidence 443 4567999999999999999887 88899999986553 222111100
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (706)
T Consensus 167 -------------------------------------------------------------------------------- 166 (370)
T KOG1007|consen 167 -------------------------------------------------------------------------------- 166 (370)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
.++.....+-+|+|......+....++++..||+.+......+ ..|...+..++ +.|+.+.+|++++.
T Consensus 167 ---------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD--fNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 167 ---------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD--FNPNKQHILVTCGD 235 (370)
T ss_pred ---------ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeecc--CCCCceEEEEEcCC
Confidence 0012223344455533333344455689999999988776554 46888899999 99999999999999
Q ss_pred CCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC-------------------
Q 005254 420 DNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE------------------- 479 (706)
Q Consensus 420 dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------------------- 479 (706)
||.|++||.+. ..++..+.+|..-|.++.|+|....++++++.|..|.+|.......+..
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99999999975 4578889999999999999998888999999999999998754431110
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~ 525 (706)
.+...........|...|.+++||.-.. .+|+-+.||.+.|=.+..
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1122223446778999999999998554 567889999998876543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-16 Score=142.49 Aligned_cols=378 Identities=18% Similarity=0.229 Sum_probs=238.4
Q ss_pred EEEEeeCCeEEEEEccCCeEEEeecCC---CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE
Q 005254 33 FIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109 (706)
Q Consensus 33 ~l~~~~~~~i~i~d~~~~~~~~~l~~~---~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 109 (706)
.+++-+...+.+|+............+ ..+.+..++|++|+++|.+. +..+.|++..++..+.+.... .+.++.
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 345555568899987654433333333 44578889999999998775 448999999998655444433 889999
Q ss_pred ECCCCCEEEEec-----C-----CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 110 CHPSGGLLATAG-----A-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 110 ~s~~~~~l~~~~-----~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
|||-+.+|.+-- . .-.+.+|+++++.....+......-++..|++|.. +++--..+.+.+|+..+.+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh---hhhhhhcceEEEEecCCcc
Confidence 999999998731 1 24578999999766555554433337999999865 5555566789999987644
Q ss_pred eEEEeecccceEEEEEEecCCC--EEEE-----EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccccc
Q 005254 180 CVATLDKHFSRVTSMAITSDGS--TLIS-----AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
... -+-|...|..+.++|.+. .+++ .|.-+.|++|..........+.... |+.
T Consensus 158 ~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ks------FFk------------- 217 (566)
T KOG2315|consen 158 TIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKS------FFK------------- 217 (566)
T ss_pred cee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcc------ccc-------------
Confidence 332 234677888999988743 3332 2344566666554211111000000 000
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
.|.
T Consensus 218 -------------------adk---------------------------------------------------------- 220 (566)
T KOG2315|consen 218 -------------------ADK---------------------------------------------------------- 220 (566)
T ss_pred -------------------cce----------------------------------------------------------
Confidence 000
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
..+.|......+|+.++.+ +...+.
T Consensus 221 ------------------------vqm~WN~~gt~LLvLastd------------------------------VDktn~- 245 (566)
T KOG2315|consen 221 ------------------------VQMKWNKLGTALLVLASTD------------------------------VDKTNA- 245 (566)
T ss_pred ------------------------eEEEeccCCceEEEEEEEe------------------------------ecCCCc-
Confidence 0111111111111111110 111110
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE-ecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
+-..+.++++++++ +.....--...++|.++.|+++++.+.++ |-.-.++.+||++ ....+.
T Consensus 246 ---SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-------------~~~v~d 308 (566)
T KOG2315|consen 246 ---SYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-------------GKPVFD 308 (566)
T ss_pred ---cccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-------------CCEeEe
Confidence 11123356666666 33333333457999999999999866554 4556789999987 444555
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC------CCcEEE
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKI 562 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i 562 (706)
-..++-+++-|+|.|++++.++-+ |.+.+||+.+.+++..+..... +-+.|+|||++++++.. |+.++|
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 566777899999999999987754 7899999999988888876443 55899999999999875 677999
Q ss_pred EEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 563 WSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 563 wd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
|+. +|..+....-.. +...+.|-|-
T Consensus 387 why-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 387 WHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred EEe-cCceeehhhhhH-hHhheeeeec
Confidence 998 577665443222 5677777763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=142.71 Aligned_cols=320 Identities=16% Similarity=0.112 Sum_probs=203.0
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
++++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.......+.+++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 44566678999999999999999997655544557899999999999999999999999999887776655444444443
Q ss_pred CCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCee
Q 005254 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (706)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (706)
+|
T Consensus 88 DG------------------------------------------------------------------------------ 89 (369)
T PF02239_consen 88 DG------------------------------------------------------------------------------ 89 (369)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 33
Q ss_pred EEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE-EEecCCcEEEEeCCCceeeEeeeCC---
Q 005254 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGH--- 395 (706)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~--- 395 (706)
++++ +....+.+.++|..+.+.+..+...
T Consensus 90 -----------------------------------------------~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 90 -----------------------------------------------KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp -----------------------------------------------TEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred -----------------------------------------------CEEEEEecCCCceeEeccccccceeeccccccc
Confidence 2333 3345577777777777776665533
Q ss_pred ----cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 396 ----SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 396 ----~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
...+..+. .++....+++.--+.+.|.+.|+...+.+. .............|+|+++.++++...++.|-++|
T Consensus 123 ~~~~~~Rv~aIv--~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 123 VDGPESRVAAIV--ASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp TTTS---EEEEE--E-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCceeEE--ecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 23344553 566666645555666889888987754333 22234456778899999997777777888999999
Q ss_pred ecCCCCCCCcccccceeEEE----eecCcceEEE---------EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVV----AAHGKDINSL---------AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~---------~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 537 (706)
....+. .... ..|..+...+ +....+...++.-....+.+||..+.+.+..+.....
T Consensus 201 ~~~~k~----------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 201 TKTGKL----------VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp TTTTEE----------EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred eccceE----------EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence 876531 1111 1112222211 1122333333333334677899999999999998777
Q ss_pred cEEEEEEccCCCEEEEe----cCCCcEEEEEcCCCceEEEEeecc-cCEEEEEEEeCCCEEEEEeCC--CCEEEEECCCC
Q 005254 538 GIWSVEFSPVDQVVITA----SGDKTIKIWSISDGSCLKTFEGHT-SSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTG 610 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~ 610 (706)
+ ..+..+|+++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+++..+..+ +.|.+||..+.
T Consensus 271 g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 271 G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred c-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7 788889999999987 455889999999998887775332 358999999999977554443 36999999999
Q ss_pred eEEEEec
Q 005254 611 ECIATYD 617 (706)
Q Consensus 611 ~~~~~~~ 617 (706)
+.+..+.
T Consensus 350 ~~~~~i~ 356 (369)
T PF02239_consen 350 KEKKRIP 356 (369)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998886
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=165.38 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=138.1
Q ss_pred EEccCCeEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCCC-------eEEEEeeccCCCeEEEEECCCCCE
Q 005254 45 VDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL-------KCLRSWKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 45 ~d~~~~~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~ 116 (706)
|++ .|..+..|..|...|..++.++.. .++++|+.||+|++||...- +...++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 653 577888899999999999988765 99999999999999998532 233344445788999999999999
Q ss_pred EEEecCCCcEEEEECCCC--e-----EEEEe--eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee--
Q 005254 117 LATAGADRKVLVWDVDGG--F-----CTHYF--KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-- 185 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~~--~-----~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 185 (706)
+|+++.||.|.+.+++.. + +.... +.....|..-+|........++.+...+.|..||++.......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999999762 1 11111 122233445555554444478888888999999998776554442
Q ss_pred cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
...+.|++++.+|.+.++++|+..|.+.+||++-+..+...
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 34578999999999999999999999999999877665544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-17 Score=138.43 Aligned_cols=225 Identities=12% Similarity=0.218 Sum_probs=167.7
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
..++..|+.|| .++|+.+..............|-.+-|+.. +++..+.+ ..++++++... ...
T Consensus 17 ~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~-----------~~I 81 (391)
T KOG2110|consen 17 STLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKK-----------TTI 81 (391)
T ss_pred eeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccC-----------ceE
Confidence 33366677666 456666544333333334445666667765 55555444 45888887654 222
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEec--CCCcEEEE
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITAS--GDKTIKIW 563 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw 563 (706)
.......+|.++.++.+ .|+++-.+ .|+|||+++.+.+.++.. +...+.++.+++.+.+||.-+ ..|.|.+|
T Consensus 82 Ce~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 22334566888887644 56666554 499999999999887764 445566666666777888643 46889999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC-EEEEECCCCeEEEEeccC--CCcEEEEEEcCCCCEEEEEeC
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-VKLWTVRTGECIATYDKH--EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~ 640 (706)
|+.+-+.+..+..|.+++.+++|+++|.+||++++.|+ |||+.+.+|+.+..++.- ...|.+++|+||+++|++.+.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999996 689999999999999832 446789999999999999999
Q ss_pred CCcEEEEECCchh
Q 005254 641 DALVNLWHDSTAA 653 (706)
Q Consensus 641 dg~i~vw~~~~~~ 653 (706)
.++|.+++++...
T Consensus 239 TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 239 TETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEEEecccc
Confidence 9999999998765
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-16 Score=133.67 Aligned_cols=233 Identities=11% Similarity=0.155 Sum_probs=174.4
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEEEeeccC
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+.|..|...|..|+.+...+|+................|..+-||.. ++|..+ +...+++.+.+.+..+..+. ..
T Consensus 11 ~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 11 IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 45889999999999999999987765543333333456777778854 455443 34569999999988888877 45
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC---CCcEEEEEEcCCCCceEEEE--EecCCeEEEEECCC
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFS--GSDDATVRVWDLLA 177 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~ 177 (706)
.+|.++.++. ++|+++-.+. |+|||+.+.++++++..- ...+.++++++.+.+ ++- ....|.|.+||..+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y--lAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY--LAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCce--EEecCCCCCceEEEEEccc
Confidence 7899999884 5677765544 999999999999887643 334555555544333 443 34579999999999
Q ss_pred CeeEEEeecccceEEEEEEecCCCEEEEEeCCCE-EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhh
Q 005254 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTI 256 (706)
Q Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (706)
-+.+..+..|.+.+.+++|+++|.+|+++++.|+ |||+.+.+++.+.++.....
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~------------------------- 217 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY------------------------- 217 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------------------
Confidence 9999999999999999999999999999999885 68999888776665432211
Q ss_pred hccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 257 KKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
.-.+.+++|+|+.+.|.+.+..+++.++.+...
T Consensus 218 -----------------------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 -----------------------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------------------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 223567778888888888888888888887765
Q ss_pred c
Q 005254 337 P 337 (706)
Q Consensus 337 ~ 337 (706)
.
T Consensus 251 ~ 251 (391)
T KOG2110|consen 251 S 251 (391)
T ss_pred c
Confidence 4
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=149.14 Aligned_cols=517 Identities=14% Similarity=0.199 Sum_probs=335.4
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe---------------EEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
.....|++|+....|+|+|+.||.+++-.+.+.. .-+.+.+|.+.|..+.|+.+.+. |-+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK--LTtSDt 91 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK--LTTSDT 91 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc--ccccCC
Confidence 4567899999999999999999999999886531 22457799999999999987666 899999
Q ss_pred CCeEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 167 DATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
+|.|.+|-+-.+.-.... ....+-|.+|+|..||..+.....||.|.+=.++..
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN------------------------ 147 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN------------------------ 147 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc------------------------
Confidence 999999998776543322 234567899999999999999999997766444322
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
++|.-+-. ......+.++++.+.++..-.
T Consensus 148 --------------------------------RIwgKeLk-------------------g~~l~hv~ws~D~~~~Lf~~a 176 (1189)
T KOG2041|consen 148 --------------------------------RIWGKELK-------------------GQLLAHVLWSEDLEQALFKKA 176 (1189)
T ss_pred --------------------------------eecchhcc-------------------hheccceeecccHHHHHhhhc
Confidence 22321111 112245667788888888888
Q ss_pred CCceEEEEeeeccccceeeEE----eeEecccCceeeEeeE-------eCCCCcEEEEEecCCcEEEEeCCCceeeEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELIL----SKRLVGYNEEILDLKF-------LGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~ 393 (706)
+|...+|+...+-..+..... ..........+..+.+ .+++...++++..+|.+.+..-.+......+.
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 888888888776554443332 2223333344555555 45788899999999999988766544443333
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCC---------cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec---
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDN---------SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--- 461 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--- 461 (706)
.. -.+.... +.+++.. +++++.+. .|.++. .-|..+..++.....|++++|-..|-.+.++..
T Consensus 257 tg-m~~vgak--Wnh~G~v-LAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfi 331 (1189)
T KOG2041|consen 257 TG-MKIVGAK--WNHNGAV-LAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFI 331 (1189)
T ss_pred cc-cEeecce--ecCCCcE-EEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceE
Confidence 33 3444555 7788887 55554332 344443 346677778888888999888766532111110
Q ss_pred ---------------------------CCCeEEEEEecCCCCCCCcccccceeEEEe-----------ec---------C
Q 005254 462 ---------------------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA-----------AH---------G 494 (706)
Q Consensus 462 ---------------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~---------~ 494 (706)
..-.|.+||..+.................. ++ .
T Consensus 332 yfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~ 411 (1189)
T KOG2041|consen 332 YFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR 411 (1189)
T ss_pred EEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence 112355666544321110000000000000 00 0
Q ss_pred --------------------cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--------------------------
Q 005254 495 --------------------KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-------------------------- 528 (706)
Q Consensus 495 --------------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------- 528 (706)
..|...-..-++..++.++.+ .+.+|.....+.
T Consensus 412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d 490 (1189)
T KOG2041|consen 412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQD 490 (1189)
T ss_pred cceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhh
Confidence 011111222256667777765 477886432111
Q ss_pred ------EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCE
Q 005254 529 ------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLV 602 (706)
Q Consensus 529 ------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 602 (706)
..++.+..++|-+++.+ .++|..+-..|.|.-|.+.+........ -...+..+.+..+..+++...--|.+
T Consensus 491 ~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~ 567 (1189)
T KOG2041|consen 491 RTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV 567 (1189)
T ss_pred ceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence 12344566788888876 6889999999999999998887776665 45678899999888999999888999
Q ss_pred EEEECC---CCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH---HHHHHHHHHhcchhhhh
Q 005254 603 KLWTVR---TGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA---FRKEEEAVLRGQELENA 675 (706)
Q Consensus 603 ~iwd~~---~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 675 (706)
.+.|+. +|..+. .+......|+.+.|..|+..|+.-.+...+.|++-.++.+.... +...++..+....+++.
T Consensus 568 tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~I 647 (1189)
T KOG2041|consen 568 TFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKI 647 (1189)
T ss_pred eeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhH
Confidence 998886 455544 45566778999999999888887777777888876655433221 23344444555555555
Q ss_pred hhccch-hHhhheeeecCCcchHHHHHHhh
Q 005254 676 VLDADY-TKAIQVAFELRRPHKLFELFASV 704 (706)
Q Consensus 676 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 704 (706)
+..++- .+.-.+.++.+.+++.-+++|.+
T Consensus 648 l~~pE~pnk~~ii~~~ikslrD~~~Lve~v 677 (1189)
T KOG2041|consen 648 LLTPENPNKTCIIEVMIKSLRDVMNLVEAV 677 (1189)
T ss_pred hcCcCCCCcceEEEEEehhhhhHHHHHHHh
Confidence 555544 46667777777777777777654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=140.83 Aligned_cols=267 Identities=14% Similarity=0.132 Sum_probs=183.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
....+.+...++.|.+|++...+-...+.....++..+. ++|+++.++.+..-+-+|.+|.+.+.+.... +-....+
T Consensus 60 s~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~ 136 (447)
T KOG4497|consen 60 SCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNV 136 (447)
T ss_pred ceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCc
Confidence 344566667778999999999988888888888888887 9999999899999999999999998776544 3344556
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
..++|+|+|+ +.+..+.......+++... ........+....-..+.+.|+|||..|++-..--.-++
T Consensus 137 kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c-------~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv---- 204 (447)
T KOG4497|consen 137 KGYAFHPDGQ-FCAILSRRDCKDYVQISSC-------KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV---- 204 (447)
T ss_pred eeEEECCCCc-eeeeeecccHHHHHHHHhh-------HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee----
Confidence 8999999998 5554443211111111100 011122223334455788999999988876432111111
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-----------------------------
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE----------------------------- 575 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 575 (706)
.... ..-.+..++|+|.+++|++|+.|+.+||.+--+.+...++-
T Consensus 205 -----~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 205 -----YAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred -----eeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1111 23467889999999999999999999886543322211110
Q ss_pred -------------------------------------ecccCEEEEEEEeCCCEEEEEeCC--CCEEEEECCCCeEEEEe
Q 005254 576 -------------------------------------GHTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVRTGECIATY 616 (706)
Q Consensus 576 -------------------------------------~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~ 616 (706)
...-.+--++|++|..|+++-... +.+-+||++.-+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 011235668999999998886543 57899999877755444
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 617 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
....+|.+..|.|....|+.+.....+.+|...-..
T Consensus 359 -iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 359 -IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred -hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 346789999999999999888888889999876643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=153.95 Aligned_cols=315 Identities=16% Similarity=0.294 Sum_probs=236.9
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-ccCCCeEEEEECC--CCCEEEEecCCCcEEE
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHP--SGGLLATAGADRKVLV 128 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v 128 (706)
....|.+|.+.|..|.|...|..|++++.|..|.+||+.+++....+. +|...|..-.|-| +...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 346788999999999999999999999999999999999998877764 6989999989988 4568999999999998
Q ss_pred EECCC-CeE--EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccc---eEEEEEEecC
Q 005254 129 WDVDG-GFC--THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFS---RVTSMAITSD 199 (706)
Q Consensus 129 w~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~v~~~~~~~~ 199 (706)
=.+.. +.+ ...+..|.++|..++.-|+.. .-+.+++.|+.+.-.|++.+.....+ ..+.. ....++..|.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87743 322 345567999999999999754 46889999999999999877654333 22333 5677888886
Q ss_pred CC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEE
Q 005254 200 GS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278 (706)
Q Consensus 200 ~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 278 (706)
.. .+++++.|..+++||.+.......-. .+. .+.|.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~---~~~--~f~p~-------------------------------------- 329 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNG---VLD--KFCPH-------------------------------------- 329 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccc---hhh--hcCCc--------------------------------------
Confidence 55 78899999999999976532211000 000 00000
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc------eeeEEeeEeccc
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK------MELILSKRLVGY 352 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 352 (706)
.......-.|+++.++.++..+++...|-.+++++........ ..........+|
T Consensus 330 -------------------hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH 390 (559)
T KOG1334|consen 330 -------------------HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH 390 (559)
T ss_pred -------------------cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccc
Confidence 0111334568899999999999999999999999554332211 011111224444
Q ss_pred --CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 353 --NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 353 --~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
...|..+-|..+...++++|+.-|.|.+|+-.+++.+..+.+...-|.|+. ..|--.. |++.+-|..|+||-..+
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE--pHP~~Pv-LAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE--PHPHLPV-LASSGIDHDVKIWTPLT 467 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC--CCCCCch-hhccCCccceeeecCCc
Confidence 345888999999999999999999999999999999999999888999997 6666665 99999999999998754
Q ss_pred ce
Q 005254 431 RC 432 (706)
Q Consensus 431 ~~ 432 (706)
.+
T Consensus 468 ~e 469 (559)
T KOG1334|consen 468 AE 469 (559)
T ss_pred cc
Confidence 43
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-17 Score=135.67 Aligned_cols=254 Identities=15% Similarity=0.259 Sum_probs=181.9
Q ss_pred eEEEeeeeeecCCCEEEEEeeC----CCcEEEE--eCCCceEEEEE-eCCCcCeEEEEEecCCC----eEEEEecCCCeE
Q 005254 398 IVLCLDTCALSSGKILIVTGSK----DNSVRLW--DSESRCCVGVG-TGHMGAVGAVAFSKKLQ----NFLVSGSSDHTI 466 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~----dg~i~i~--d~~~~~~~~~~-~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i 466 (706)
++.+++|..-++.+..++.|+- .+.|.+. |..+++.+... ..|.-+++.+.|.|+.. .+|++. +..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence 3455554444555656777753 3445554 33344444332 35788999999999863 244443 3579
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCcc---EEEEEeecCCcEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKRGIWSV 542 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~ 542 (706)
++|.+.......... ..........+..++++..|+. +-+++.+.+-|-+..|||++++. ...++-.|..+|..+
T Consensus 124 RlWri~~ee~~~~~~-~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQ-SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEeccCcCCceehh-hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999987532211111 1111122345677899999987 66899999999999999999863 366778899999999
Q ss_pred EEccCC-CEEEEecCCCcEEEEEcCCCceEEEEe---ecccCEEEEEEEeC-CCEEEEEeCC-CCEEEEECCCC-eEEEE
Q 005254 543 EFSPVD-QVVITASGDKTIKIWSISDGSCLKTFE---GHTSSVLRASFLTR-GAQIVSCGAD-GLVKLWTVRTG-ECIAT 615 (706)
Q Consensus 543 ~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~~-~~~l~~~~~d-g~i~iwd~~~~-~~~~~ 615 (706)
+|...+ +.+|+.+.||.+|++|++..+.-..+. ....+...++|++. -+++|+-..| ..|.|.|++.. .++..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999865 578999999999999998765433322 22457888999874 4577776665 47999999864 68899
Q ss_pred eccCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCchhH
Q 005254 616 YDKHEDKIWALAVGKKT-EMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 616 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
+++|.+.|+.++|.|.. ..|.|+|.|..+.+||+.....
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 99999999999999975 5799999999999999976554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=159.82 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=202.8
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc---ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-C--
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-S-- 430 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~-- 430 (706)
..+.|.| -...++++.....|++||.+.++....+..+. ..|+.+.. ....+..++++++.||.|+||+-. +
T Consensus 1068 k~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l-iNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1068 KTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL-INEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred ceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee-ecccchhheeeeccCceEEEeccccccc
Confidence 3344444 55678888888999999999998877776544 34555542 334455569999999999999643 2
Q ss_pred --ceEEEEEeC-------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 431 --RCCVGVGTG-------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 431 --~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.+.+....+ ..+.-.-+.|..... .|++++.-..|+|||...... ......+.+..++++.
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~---------~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV---------VADIPYGSSTLVTALS 1215 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEeccccee---------EeecccCCCccceeec
Confidence 223322221 112223356666655 566777789999999975421 2222333455567665
Q ss_pred EcC-CCCEEEEeeCCCcEEEEeCCCc---cEEEEEeecCCc--EEEEEEccCCC-EEEEecCCCcEEEEEcCCCceE--E
Q 005254 502 VAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGHKRG--IWSVEFSPVDQ-VVITASGDKTIKIWSISDGSCL--K 572 (706)
Q Consensus 502 ~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~--v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~ 572 (706)
-+- .|+.+++|..||.|++||.+.. ..+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++..... .
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 543 5799999999999999998754 356777888887 99999988665 4999999999999999874222 2
Q ss_pred EEeecc--c-CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-------CCcEEEEEEcCCCCEEEEEeCCC
Q 005254 573 TFEGHT--S-SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-------EDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 573 ~~~~~~--~-~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+..|. + ..+++..+++...+|+|+. +.|+||++ .|+.+..++.+ .+.+.|++|+|-.-++++|+.|.
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc
Confidence 233333 3 5899999999999999998 99999998 46655555432 34679999999999999999999
Q ss_pred cEEEEECCchh
Q 005254 643 LVNLWHDSTAA 653 (706)
Q Consensus 643 ~i~vw~~~~~~ 653 (706)
.|.||...++.
T Consensus 1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred eEEEeecCCcC
Confidence 99999887654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=148.72 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=157.5
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
..++|+.+|. .+++++.||++++|+.+... .......|...|.++.|+|||++|++-+.| ..+||+..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~----------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML----------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch----------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 7889999987 89999999999999977543 344456788999999999999999999999 89999999
Q ss_pred CccEEEEEee--cCCcEEEEEEccCC-----CEEEEecCCCcEEEEEcCCCce-----EEEEeecccCEEEEEEEeCCCE
Q 005254 525 DLVSVVTFRG--HKRGIWSVEFSPVD-----QVVITASGDKTIKIWSISDGSC-----LKTFEGHTSSVLRASFLTRGAQ 592 (706)
Q Consensus 525 ~~~~~~~~~~--~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~ 592 (706)
++..+..... .+.....+.|+.|+ ..++....-+.|+.||+..... .++.......|.+++.++||++
T Consensus 216 ~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 9966665542 23345677888776 3344445566788877653322 1112223458999999999999
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++.|+.||.|.|++..+-+.+...+ .|...|+.+.|+||.+++++.+.|....+-.+.-.
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999999998887776 89999999999999999999999999999888653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=149.44 Aligned_cols=224 Identities=15% Similarity=0.200 Sum_probs=169.6
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEE----eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+.+-. +..|-.-|.+.+.|....+..+.+ ......++++.|-|.+...++++-.+|.+++||.......
T Consensus 183 ~~g~d-llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------ 255 (636)
T KOG2394|consen 183 PKGLD-LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------ 255 (636)
T ss_pred CCCcc-eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence 34444 778888899998887653222211 1234789999999988889999999999999987422100
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
.-.+-...+++..++....-+ -.+..++..+.--.+.|...+|+|||++||+.+.||.+||+
T Consensus 256 ------------t~p~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 256 ------------TAPSYQALKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred ------------CCCcccccCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence 001112223555554432211 11224444555456689999999999999999999999999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-------------
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK------------- 630 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~------------- 630 (706)
|..+.+++..++..-+...|++|||||+||++|++|-.|.||.+..++.++.-++|.+.|+.++|.|
T Consensus 318 ~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~ 397 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSG 397 (636)
T ss_pred eccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccccc
Confidence 9999998888887778999999999999999999999999999999999999999999999999982
Q ss_pred ----------------------CC-------------CEEEEEeCCCcEEEEECCchhHHH
Q 005254 631 ----------------------KT-------------EMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 631 ----------------------~~-------------~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
++ -.+.+.+.|..+++||+.......
T Consensus 398 ~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 398 MDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01 146788999999999998777655
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=143.82 Aligned_cols=244 Identities=13% Similarity=0.199 Sum_probs=155.1
Q ss_pred eeEeeEeCCCCcEEEE-EecCCcEEEEeCCC-cee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-
Q 005254 356 ILDLKFLGEEEQYLAV-ATNIEQVQVYDLSS-MSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES- 430 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 430 (706)
...+.+.| ++++|++ +..++.|.+|++.. +.. ..... .......+. ++|+++.++++...++.+.+|++.+
T Consensus 37 ~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~--~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 37 VQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS--TDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE--ECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34455555 4444444 34567888888763 322 11221 122334455 8899998666666789999999864
Q ss_pred ce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 431 RC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 431 ~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
+. .+.... +......++++|+++.++++...++.|.+||+.......... ..............++|+|+|+
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----PAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC----CCceecCCCCCCceEEECCCCC
Confidence 22 222222 234567789999998666777788999999997532110000 0000111234467899999999
Q ss_pred EEEEeeC-CCcEEEEeCCC--c--cEEEEEeecC------CcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceEEEEe
Q 005254 508 LVCTGSQ-DRTACVWRLPD--L--VSVVTFRGHK------RGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 508 ~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 575 (706)
+++++.. ++.|.+|++.. + +.+..+..+. .....+.++|++++|+++.. ++.|.+|++.......++.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9988876 89999999973 2 2333332211 12346889999999998854 7899999996543222222
Q ss_pred ecc---cCEEEEEEEeCCCEEEEEeC-CCCEEEEECC
Q 005254 576 GHT---SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR 608 (706)
Q Consensus 576 ~~~---~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 608 (706)
++. .....+.|+|||++|+++.. +++|.+|++.
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 221 24557899999999998775 8899999874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-15 Score=126.57 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=188.2
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC------CcEEEEeCCCc
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD------NSVRLWDSESR 431 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 431 (706)
+++|.. +..-++++.. ...++|+.+..+.....+.+.+.+.-+. ..-..+.+.++|+.+ ..+.|||-...
T Consensus 10 svs~NQ-D~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 10 SVSFNQ-DHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred EEEEcc-CCceEEEEec-CceEEEecCchhhhhhhccccCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 355543 5566677666 4588898887554333333333332222 122334444555443 46999997777
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l 509 (706)
+++.++. ...+|.++.+.++ .+++. .++.|.+|.+..... ....+. .......+++-..+..+|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k---------~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPK---------LLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChh---------heeeeecccCCCceEeecCCCCceEE
Confidence 7777765 5689999999988 34444 456899999875321 222221 222333344433344555
Q ss_pred EE-eeCCCcEEEEeCCCccE--EEEEeecCCcEEEEEEccCCCEEEEecCCCc-EEEEEcCCCceEEEEee--cccCEEE
Q 005254 510 CT-GSQDRTACVWRLPDLVS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKT-IKIWSISDGSCLKTFEG--HTSSVLR 583 (706)
Q Consensus 510 ~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~i~~ 583 (706)
|. |-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|..+|+++..|+ |||||..+|+.+.+++. ....|.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 54 44568999999986655 5778899999999999999999999999997 89999999999999874 3357999
Q ss_pred EEEEeCCCEEEEEeCCCCEEEEECCCCe---E---------------------EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 584 ASFLTRGAQIVSCGADGLVKLWTVRTGE---C---------------------IATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~---------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
++|||+..+|+++++.|+++||.+.... . +..++-..+...-++|-.+.+-++..+
T Consensus 232 iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~ 311 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAIC 311 (346)
T ss_pred EEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEE
Confidence 9999999999999999999999886422 1 111222344555677877756677778
Q ss_pred CCCcEEEEECCch
Q 005254 640 SDALVNLWHDSTA 652 (706)
Q Consensus 640 ~dg~i~vw~~~~~ 652 (706)
.||+..-+.+...
T Consensus 312 ~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 312 ADGSYYKFKFDPK 324 (346)
T ss_pred eCCcEEEEEeccc
Confidence 8898776655443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=151.26 Aligned_cols=300 Identities=22% Similarity=0.269 Sum_probs=229.8
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.....+..|.+.+..+.|.. .+..+++++.+..+.+||...+.....+ .+|...+....+........ +++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~t-i~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRT-IVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcC-ceeccccCc
Confidence 34567778999999999976 7889999999999999999988776655 46877777766444455556 899999999
Q ss_pred EEEEeCCCce-E--EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc---c
Q 005254 423 VRLWDSESRC-C--VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK---D 496 (706)
Q Consensus 423 i~i~d~~~~~-~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 496 (706)
+++-.+.... + ...+..|.++|..++.-|+...-+.+++.|+.+.-+|++...... .......+.. .
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~-------~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE-------KFVCREADEKERVG 283 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc-------eeeeeccCCcccee
Confidence 9987654332 2 234567999999999999999899999999999999988653211 1112222333 5
Q ss_pred eEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccE------EEEEe------ecCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 497 INSLAVAPND-SLVCTGSQDRTACVWRLPDLVS------VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 497 i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
...++..|.. ..+++++.|..+++||.+.-.. +..+- ...-.|++++|+.++.-|+++..|-.|+++
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 6788888855 4899999999999999764322 12222 223468999999887777777788889999
Q ss_pred EcCC--C----------ceEE-EEeeccc--CEEEEEE-EeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEE
Q 005254 564 SISD--G----------SCLK-TFEGHTS--SVLRASF-LTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALA 627 (706)
Q Consensus 564 d~~~--~----------~~~~-~~~~~~~--~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 627 (706)
.-.- | .... .+++|.. .|..+-| -|...|+++|+.-|.|.||+-.+++.+..+.+....|+||.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE 443 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE 443 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC
Confidence 5322 2 1222 3777865 4666654 57788999999999999999999999999988777999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCch
Q 005254 628 VGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 628 ~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-+|--..||+.|.|..|+||...+.
T Consensus 444 pHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 444 PHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCCCchhhccCCccceeeecCCcc
Confidence 9999999999999999999987443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-15 Score=135.42 Aligned_cols=352 Identities=14% Similarity=0.201 Sum_probs=226.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---------------CeEEE
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---------------REIRV 86 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---------------~~i~i 86 (706)
...+.+||.|++|++.....|.+|+-+....+..+. | ..|..+.|||+++||.+=+.. +.+.+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred hhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 447899999999999999999999988776555554 3 568999999999999985432 35999
Q ss_pred EECCCCeEEEEeeccCCC--eE-EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-CCcEEEEEEcCCCCceEEE
Q 005254 87 WDLSTLKCLRSWKGHDGP--AI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~--v~-~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~ 162 (706)
||..+|..+..+.....+ .. -+.|+-+.+|+|-. ....++|+++...-....+..- ...|...+|+|.+++..++
T Consensus 113 wd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la 191 (561)
T COG5354 113 WDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELA 191 (561)
T ss_pred EeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEE
Confidence 999999999999886665 44 68899999988766 3467999997322212222221 3568888999986654433
Q ss_pred E-----EecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEe
Q 005254 163 S-----GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 237 (706)
Q Consensus 163 ~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 237 (706)
. .+..+++++|.+..++.+.+-.--...=..+.|.+.|++|++-....
T Consensus 192 ~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~--------------------------- 244 (561)
T COG5354 192 YWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH--------------------------- 244 (561)
T ss_pred EEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe---------------------------
Confidence 3 34456666666654444433222222223344444444443321100
Q ss_pred eCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCC
Q 005254 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 317 (706)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T Consensus 245 -------------------------------------------------------------------------------- 244 (561)
T COG5354 245 -------------------------------------------------------------------------------- 244 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
T Consensus 245 -------------------------------------------------------------------------------- 244 (561)
T COG5354 245 -------------------------------------------------------------------------------- 244 (561)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE-ecCCCeEEEEEecCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS-GSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~ 476 (706)
+.. ++.++ ....++++++.... +.......++|...+|.|.++.+.+. |-.+..+.++|++..
T Consensus 245 --------~ks-nKsyf----gesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-- 308 (561)
T COG5354 245 --------TKS-NKSYF----GESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-- 308 (561)
T ss_pred --------eec-cccee----ccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc--
Confidence 000 00000 01223333333211 12222456889999999988766444 467888889988753
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEE-EEeecCCcEEEEEEccCCCEEE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.........=..+.|+|.++++++++-| |.+-+||........ .+.+.+ ..-+.|+||++++.
T Consensus 309 -----------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~ 375 (561)
T COG5354 309 -----------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYD 375 (561)
T ss_pred -----------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEE
Confidence 2233344445678899999999987765 679999987665544 565543 34578999999988
Q ss_pred EecC------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC
Q 005254 553 TASG------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 553 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
+... |..|.|||+...... ..+.+.|.|.|++.-+.+.+.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 7643 778999998543322 445677777777766655543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=145.28 Aligned_cols=194 Identities=20% Similarity=0.184 Sum_probs=156.0
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
.+++|+.||..|++++.+ .++||+.++...+.....|.+.|.+|.|||||++|++.+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 379999999999999766 99999988888888888899999999999999999999999 899999999977776653
Q ss_pred -cCCCeEEEEECCCC---CEE--EEecCCCcEEEEECCCCe-----EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 101 -HDGPAIGMACHPSG---GLL--ATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 101 -~~~~v~~~~~s~~~---~~l--~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+.....+.|+.|+ .+. +.....+.|..|++...+ ...........|++++.+++|+. ++.|+.||.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf--~AlGT~dGs 304 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF--LALGTMDGS 304 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE--EEEeccCCc
Confidence 34566778898887 332 333344566666653221 11222234567999999999886 999999999
Q ss_pred EEEEECCCCeeEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 170 VRVWDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 170 i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
|.+++..+.+.++.. +.|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999988887765 56999999999999999999999999888877653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-18 Score=149.70 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=175.6
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG 103 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 103 (706)
+-++.+|+.|+.++.. .+..+|..++++...+.. ...|..+.|-.+.+++|++- ...++||| ..|..++.++.| .
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~ 210 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-I 210 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-C
Confidence 8899999999988775 899999999998877763 56789999999999999885 44899999 567778888866 7
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-.. ++-.|...|+|.+|.....+++..
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCCCcchHHH
Confidence 899999999999999999999999999999999999998899999999998543 477889999999999999999988
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+..|.++|.++++.++|+++++.+.|..++|||++....+.++..
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 889999999999999999999999999999999998776555544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-16 Score=152.19 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=165.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+..+.+||..... ...+..+...+.... ++|+++.++.+...+ ..|++||+.+++.... ....+....++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCC
Confidence 3689999987655 345666777777777 899999844443332 4699999988754332 222233457899999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCc-cEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDL-VSVV 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~-~~~~ 530 (706)
|+.++++.+.+|.+.+|.++.... ....+..+...+....|+|||+.|+..+ .+|...||++... ....
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGG---------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCC---------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 985555556788777775542211 2223344556678899999999877655 5778888876432 2222
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC--C
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV--R 608 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~--~ 608 (706)
.+ .+.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.++...+|++ .
T Consensus 330 ~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 330 LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 22 3433 4578999999998887765 667999888764332222 2356789999999999999998888875 3
Q ss_pred CCeEEEEeccCCCcEEEEEEcCC
Q 005254 609 TGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 609 ~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
+|+.+..+..|.+.+...+|+|-
T Consensus 404 ~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEccCCCCCCCCcccCCC
Confidence 68888889888888999999984
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-15 Score=128.93 Aligned_cols=302 Identities=21% Similarity=0.239 Sum_probs=186.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecC-CCccEEEEEEccCC-CEEEEEeccCeEEEEECCCC----eE--
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG-GSDTITALALSPDD-KLLFSSGHSREIRVWDLSTL----KC-- 94 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~----~~-- 94 (706)
-+++++.-.-+|++..+ .|++||-.+ .....++. ....|+|++|-|.+ +-|++|... -|.||..... +.
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~ 180 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIR 180 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccc
Confidence 37787755555555554 899999766 44444543 35689999999976 566666655 5999987531 11
Q ss_pred --------EEEeeccCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 95 --------LRSWKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 95 --------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+..-++| .+|++|.|.+||..+++++ .|..|.|||++++..+.......+.+.-+.||||++. ++++.
T Consensus 181 ~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~--lfaAt 257 (445)
T KOG2139|consen 181 MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV--LFAAT 257 (445)
T ss_pred cccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE--EEEec
Confidence 1122344 7899999999999999987 4678999999999877666556788999999999987 99999
Q ss_pred cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
-|+..++|+...........--.+.|...+|+|+|++|+.+.. |.=++|.+.-.+.............+
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~---------- 326 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV---------- 326 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee----------
Confidence 9999999964433222222233458999999999998776653 33445544321111111000000111
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
+-+-|+.. ........--.++..++++.|.|.++++....
T Consensus 327 ------------------------------lliaDL~e----------~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 327 ------------------------------LLIADLQE----------VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred ------------------------------eeeccchh----------hhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 11111100 00000111224567888999999999988776
Q ss_pred Cc--------eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC
Q 005254 326 QQ--------LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 326 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~ 383 (706)
+. +..|+....+ ..+...-....+......+..+...++.+|.++=+.|.+.-|++
T Consensus 367 ~~~v~~~k~~i~~fdtr~sp--~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKSP--PVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CchhhhhhhhhhhhcccccC--ceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 55 3344443322 12222223333333444444445567777777777787777765
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-16 Score=130.02 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=161.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC-CCC--eEEE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL-STL--KCLR 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~-~~~--~~~~ 96 (706)
|.|+++|++.+|.+..+ .|.||...... ..++++.|...|+++.|+|..+.|++++.|..-++|.. +.+ ++..
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce
Confidence 49999999999999888 89999876554 66899999999999999999999999999999999998 433 3555
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE----EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.+..++...+++.|+|.++.+|+|+..+.|.||=.+...-- +.-+.+...|.++.|+|+.- ++++|+.|+..++
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--LlaaGs~D~k~rV 172 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LLAAGSTDGKCRV 172 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--eecccccCcceeE
Confidence 56668899999999999999999999999999988654321 22345788899999999654 5999999999999
Q ss_pred EEC-----CC-------------CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 173 WDL-----LA-------------KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 173 wd~-----~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
+.. ++ |+++..+....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 173 fSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 173 FSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred EEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 864 11 12233333456889999999999999999999999999987664
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-14 Score=129.05 Aligned_cols=153 Identities=17% Similarity=0.269 Sum_probs=108.4
Q ss_pred CCeEE-EEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 39 GESIN-IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 39 ~~~i~-i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
+..|. .|+.++...-..+.....++..+.+||.|.+|++.... .|.+|+-..+..+..+. | ..|..+.|||.++||
T Consensus 10 s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL 86 (561)
T COG5354 10 SAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYL 86 (561)
T ss_pred cceEEEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCccccee
Confidence 33444 45555555545555467799999999999999987666 59999998888777666 4 678999999999999
Q ss_pred EEecC---------------CCcEEEEECCCCeEEEEeeCCCCc--EE-EEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 118 ATAGA---------------DRKVLVWDVDGGFCTHYFKGHKGV--VS-SILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 118 ~~~~~---------------d~~i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.+-+. +..+.+||..+|..+..+.....+ .+ -+.|+.+... ++-- ....++|+++ ++.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh--hhhh-ccCeEEEEec-CCc
Confidence 99653 235999999999999998877666 55 7788887664 3222 3345888986 333
Q ss_pred eE----EEeecccceEEEEEEecCC
Q 005254 180 CV----ATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 180 ~~----~~~~~~~~~v~~~~~~~~~ 200 (706)
.. +.++ ...+....|+|.+
T Consensus 163 ~~~~p~~~lr--~~gi~dFsisP~~ 185 (561)
T COG5354 163 IEEHPFKNLR--PVGILDFSISPEG 185 (561)
T ss_pred cccCchhhcc--ccceeeEEecCCC
Confidence 21 1111 2456666677765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=123.59 Aligned_cols=240 Identities=15% Similarity=0.220 Sum_probs=175.5
Q ss_pred CCcceEEEeeeeeecCCC----EEEEEeeCCCcEEEEeCCCc--eEE--E-----EEeCCCcCeEEEEEecCCCeEEEEe
Q 005254 394 GHSEIVLCLDTCALSSGK----ILIVTGSKDNSVRLWDSESR--CCV--G-----VGTGHMGAVGAVAFSKKLQNFLVSG 460 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~--~~~--~-----~~~~~~~~v~~~~~~~~~~~~l~~~ 460 (706)
.|.-+++.+. +.|+.. .+|++. +..+|+|.+... +.. . .-..+..++++..|+.-..+++.+.
T Consensus 94 d~~YP~tK~~--wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 94 DHPYPVTKLM--WIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCccceE--ecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee
Confidence 4556677666 444432 335544 457999987732 111 1 1234567899999998888899999
Q ss_pred cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccEEEEEe---ecC
Q 005254 461 SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTFR---GHK 536 (706)
Q Consensus 461 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~ 536 (706)
+-|-+..+||++.+. .......+.+|.++|..++|...+ +.+|+.+.||.+++||++..+.-..+. ...
T Consensus 170 SiDTTCTiWdie~~~-------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGV-------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cccCeEEEEEEeecc-------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 999999999998752 112466788999999999999865 588999999999999998765433332 235
Q ss_pred CcEEEEEEccC-CCEEEEecCC-CcEEEEEcCCC-ceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEEECCCCe-
Q 005254 537 RGIWSVEFSPV-DQVVITASGD-KTIKIWSISDG-SCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLWTVRTGE- 611 (706)
Q Consensus 537 ~~v~~~~~s~~-~~~l~~~~~d-g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~- 611 (706)
.+...++|+++ -+++|+-..| ..|.|.|++.. ..+..+++|.+.|+.++|.|. ...|.+++.|..+.+||+...-
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 67888999885 4567765554 46999999865 568899999999999999995 4589999999999999997532
Q ss_pred -----EEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCcEEE
Q 005254 612 -----CIATYDKHEDKIWALAVGKK-TEMFATGGSDALVNL 646 (706)
Q Consensus 612 -----~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v 646 (706)
++..+. -.+.|+.+.|++. +.+++.+. ++.+.+
T Consensus 323 ~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 323 ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 233333 4678999999964 56777665 444444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-16 Score=152.19 Aligned_cols=211 Identities=14% Similarity=0.095 Sum_probs=147.6
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
+..|.+||..... ...+..+...+...+|+|+|+. |+..+. +..|++||+..+. ...+......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~-----------~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGA-----------RKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCc-----------eEEEecCCCc
Confidence 4689999987654 4456667788999999999984 454443 2479999987642 1111222223
Q ss_pred eEEEEEcCCCCEEEEee-CCCcEEEE--eCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCC-ceE
Q 005254 497 INSLAVAPNDSLVCTGS-QDRTACVW--RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG-SCL 571 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~-~~~ 571 (706)
...++|+|||+.|+.+. .+|.+.|| |+.++. ...+..+...+....|+|||+.|+.++ .+|...||++... ...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 45689999999888764 67765555 665554 345556777788999999999877554 5788888876532 222
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..+ .+.. ....|+|||++|+..+.++ +.+||+.+++.......+ ....+.|+|||++|+.++.+|...+|.+.
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 223 3433 4578999999998887765 666999988765333222 23567899999999999999999888764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-13 Score=132.00 Aligned_cols=154 Identities=22% Similarity=0.362 Sum_probs=127.5
Q ss_pred eeeccceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE-
Q 005254 19 FYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR- 96 (706)
Q Consensus 19 ~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~- 96 (706)
.|..--+.++++.-+++++.-- .|.+|++.-.+.-..+.||.+.|.++.++.||.++++.++|..+++|++++++...
T Consensus 133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 3443345677888788877664 89999987444334689999999999999999999999999999999999998776
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCC-cEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-VVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
..-+|+..|..+.|.|+ ++++++.|-+.++|+.. ++.+..+.+|.. .|..++..++.. ..++++.|+.+++|++
T Consensus 213 ~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhh
Confidence 66679999999999999 89999999999999875 444557777754 588899887544 5999999999999998
Q ss_pred CC
Q 005254 176 LA 177 (706)
Q Consensus 176 ~~ 177 (706)
..
T Consensus 288 ~~ 289 (967)
T KOG0974|consen 288 NG 289 (967)
T ss_pred hc
Confidence 54
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-11 Score=111.28 Aligned_cols=556 Identities=14% Similarity=0.146 Sum_probs=295.1
Q ss_pred EEcCC--CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-------eccCeEEEEECCCCeEEE
Q 005254 26 VVSSD--GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-------GHSREIRVWDLSTLKCLR 96 (706)
Q Consensus 26 ~~s~d--g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-------~~d~~i~iwd~~~~~~~~ 96 (706)
-+.|| |..+.+.+.+.+..+++.+++.++ +..|-+-|+.-.|+|||+.+|.. ...+.+.+.+.++|+..+
T Consensus 43 ~l~PDI~GD~IiFt~~DdlWe~slk~g~~~r-itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kR 121 (668)
T COG4946 43 YLNPDIYGDRIIFTCCDDLWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKR 121 (668)
T ss_pred hcCCcccCcEEEEEechHHHHhhhccCCeeE-EecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEE
Confidence 34564 788888888889999999998865 55577889999999999998862 234568888889988655
Q ss_pred EeeccCCCeEE-EEECCCCCEEEEecCCCcE----EEEECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEE------
Q 005254 97 SWKGHDGPAIG-MACHPSGGLLATAGADRKV----LVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSG------ 164 (706)
Q Consensus 97 ~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i----~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~------ 164 (706)
.--- ....+. .-|+|||+.+++...-.-. .+|.+.. |-.... -.-++.+.+.+- || . ++.|
T Consensus 122 iTyf-Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~--LnlGpathiv~~-dg-~--ivigRntydL 194 (668)
T COG4946 122 ITYF-GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEP--LNLGPATHIVIK-DG-I--IVIGRNTYDL 194 (668)
T ss_pred EEEe-ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeee--ccCCceeeEEEe-CC-E--EEEccCcccC
Confidence 3221 233333 4599999988886532211 2233221 110111 123344444442 22 1 2222
Q ss_pred --------ecCCeEEEEEC-CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE--eCCCCcceeeecCcceee
Q 005254 165 --------SDDATVRVWDL-LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW--DLRDYSCKLTVPTYEMVE 233 (706)
Q Consensus 165 --------~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w--~~~~~~~~~~~~~~~~~~ 233 (706)
+..| .+|-- ..++....+-.-.+.|.+--+.. ++..+....+|.=.+| |++... ++.......-.
T Consensus 195 P~WK~YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD-lrrHTnFtdYY 270 (668)
T COG4946 195 PHWKGYKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD-LRRHTNFTDYY 270 (668)
T ss_pred cccccccCCccc--eEEEEecCCcceeeeeecCCCcCCceEEc-ceEEEEecccCccceEEeccCCch-hhhcCCchhcc
Confidence 2222 23422 22222222222222233322221 2222333344433333 333222 22211111111
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC-ccccccccCCCccceeEEE-
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS-DVTISFEMDDSKRGFTAAT- 311 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 311 (706)
.-....+| .-+.-...|.|.++|.++..+....-. +............+..-+.
T Consensus 271 ~R~~nsDG------------------------krIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyled 326 (668)
T COG4946 271 PRNANSDG------------------------KRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLED 326 (668)
T ss_pred ccccCCCC------------------------cEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhh
Confidence 11222222 345556778899999888744322111 1110001111111111111
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCC-cEEEEeCCCceeeE
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIE-QVQVYDLSSMSCSY 390 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~-~i~~~d~~~~~~~~ 390 (706)
+++....+++.-+.|...+.+..... ....++.+.|.-..+.. +.+-++.++.+| .+.++|..+++..
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~---------~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k- 395 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGY---------SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK- 395 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCe---------eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE-
Confidence 33444445555555665555444332 11223344444444444 444788888888 8999999988755
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC----eE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i 466 (706)
.+...-+.|.++. .+++++. ++++.....+.+.|+.++.....-+...+-|+..+|+|+++ +++-+-.+| .|
T Consensus 396 r~e~~lg~I~av~--vs~dGK~-~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~I 471 (668)
T COG4946 396 RIEKDLGNIEAVK--VSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSI 471 (668)
T ss_pred EeeCCccceEEEE--EcCCCcE-EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeE
Confidence 4555667788887 8888888 88888889999999999988877777888999999999987 777776654 68
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE--EeecCCcEEEEE-
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT--FRGHKRGIWSVE- 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~- 543 (706)
+++|+...+ ..........=.+-+|.||+++|..-+.. -.|......+.. +..+..+-..+-
T Consensus 472 klydm~~~K-----------iy~vTT~ta~DfsPaFD~d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~ 536 (668)
T COG4946 472 KLYDMDGGK-----------IYDVTTPTAYDFSPAFDPDGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLG 536 (668)
T ss_pred EEEecCCCe-----------EEEecCCcccccCcccCCCCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEec
Confidence 899988753 11122222223456888999988765532 112222221111 111222211110
Q ss_pred ---EccCCCEEE-EecCCCcEEEEEcCC---------CceEEEEee-cccCEEEEEEEeCCC---EEEEEeCCCCEEEEE
Q 005254 544 ---FSPVDQVVI-TASGDKTIKIWSISD---------GSCLKTFEG-HTSSVLRASFLTRGA---QIVSCGADGLVKLWT 606 (706)
Q Consensus 544 ---~s~~~~~l~-~~~~dg~i~iwd~~~---------~~~~~~~~~-~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd 606 (706)
.||-.+..- .-+.+|.+-+=+++. +.- ..+.+ ..+.|.-...--.|. ++-.+-.-|.+.+||
T Consensus 537 ~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY-~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~yd 615 (668)
T COG4946 537 RGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDY-RSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYD 615 (668)
T ss_pred CCCCChhhcCchhcCccccceehhhhcccccccccCccce-eEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEe
Confidence 122111110 112233332222211 111 11111 112232222211222 222234567888888
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 607 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+++.+.- .-...+.++..|+|++.++. -.||.+++++++...
T Consensus 616 letkk~~----e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekkP 657 (668)
T COG4946 616 LETKKVE----EYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKKP 657 (668)
T ss_pred cchhhHH----HHhcccceEEEcCCCCEEEE-EeCCeEEEEecccCc
Confidence 8765432 22467899999999999887 789999999998733
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=148.29 Aligned_cols=294 Identities=17% Similarity=0.275 Sum_probs=204.3
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-------eeeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
.....+..|...+..++.++++..++++++.||+|++|+.... +....+......+.++. ....+.. +|.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt--~~~~~~~-~Av 1115 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVT--MCGNGDQ-FAV 1115 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEE--eccCCCe-EEE
Confidence 3445666788888899999989899999999999999998632 23334444566777887 4455666 889
Q ss_pred eeCCCcEEEEeCCCc--e-----EEEEEeC-CCcCeEE-EEEecCCCe-EEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 417 GSKDNSVRLWDSESR--C-----CVGVGTG-HMGAVGA-VAFSKKLQN-FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~--~-----~~~~~~~-~~~~v~~-~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
++.||.|++.++... + ..+.... ..+.+.. -++....+. .++.+...+.|..||....... .
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--------w 1187 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--------W 1187 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--------H
Confidence 999999999987752 1 1111111 1223333 344433333 7888888999999998754211 1
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCC---CEEEEe-c-CCCcE
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVD---QVVITA-S-GDKTI 560 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~---~~l~~~-~-~dg~i 560 (706)
........+.|++++.+|.+.++++|+..|.+.+||++-+.++.... ++..++..+..+|-. ...+++ + ..+.|
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 11223345679999999999999999999999999999888887765 355778888877643 344444 3 47789
Q ss_pred EEEEcCCCceEEEEeecc-------------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEE--------
Q 005254 561 KIWSISDGSCLKTFEGHT-------------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-------- 613 (706)
Q Consensus 561 ~iwd~~~~~~~~~~~~~~-------------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------- 613 (706)
.+|++.+|.+...+.... -......+...+.++.+|+.|..|+.||....+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s 1347 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPS 1347 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcc
Confidence 999999997766665331 11223344444568999999999999998532211
Q ss_pred ----------------------------------------EEe--------ccCCCcEEEEEEcCCC-CEEEEEeCCCcE
Q 005254 614 ----------------------------------------ATY--------DKHEDKIWALAVGKKT-EMFATGGSDALV 644 (706)
Q Consensus 614 ----------------------------------------~~~--------~~~~~~v~~~~~s~~~-~~l~~~~~dg~i 644 (706)
... ..|.++|++|++-... .+|++++.||.|
T Consensus 1348 ~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~I 1427 (1431)
T KOG1240|consen 1348 TSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVI 1427 (1431)
T ss_pred ccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCee
Confidence 000 1377788888876544 588899999999
Q ss_pred EEEE
Q 005254 645 NLWH 648 (706)
Q Consensus 645 ~vw~ 648 (706)
.+|+
T Consensus 1428 kiWk 1431 (1431)
T KOG1240|consen 1428 KIWK 1431 (1431)
T ss_pred eecC
Confidence 9995
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-17 Score=146.81 Aligned_cols=229 Identities=17% Similarity=0.209 Sum_probs=191.7
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
...++ +..++.. ++.|+..|.+..+|..+++....+. -...|..+.|-.+.+ +++..+...+++||-...
T Consensus 132 PY~~~--ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~Gt---- 201 (545)
T KOG1272|consen 132 PYHLD--YTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGT---- 201 (545)
T ss_pred Ceeee--ecCCccE-EEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCc----
Confidence 34455 7777877 8889999999999999998887765 346788888887755 555667788999986543
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
....+. ....+..+.|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|...|
T Consensus 202 -------ElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 202 -------ELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -------EEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCc
Confidence 223232 235688899999999999999999999999999999999999899999999999999999999999
Q ss_pred cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
+|.+|...+.+++..+..|.++|.++++.++|+|++|.+.|..++|||++.-..+.++.. .-+...+++|..| ++++
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 999999999999988889999999999999999999999999999999999887777765 4567788888766 4445
Q ss_pred eCCCcEEEEE
Q 005254 639 GSDALVNLWH 648 (706)
Q Consensus 639 ~~dg~i~vw~ 648 (706)
+....+.+|.
T Consensus 351 ~~G~~v~iw~ 360 (545)
T KOG1272|consen 351 SYGDHVQIWK 360 (545)
T ss_pred ecCCeeeeeh
Confidence 5556799996
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=140.42 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=142.8
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeee----CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG 439 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 439 (706)
+++--+.++-..|.+.++|....+..+.+. -....++|+. +.|.+..+++++..+|.++++|...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ik--Wvpg~~~~Fl~a~~sGnlyly~~~~--------- 251 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIK--WVPGSDSLFLVAHASGNLYLYDKEI--------- 251 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEE--EEeCCCceEEEEEecCceEEeeccc---------
Confidence 355567788888999999987633322221 2346789998 6777777788899999999998621
Q ss_pred CCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 440 HMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 440 ~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
....+...+ .+++. .+... .|.-.... .+.....-....|...+|+|||++||+.+.||.
T Consensus 252 -~~~~t~p~~~~~k~~~-~f~i~-------t~ksk~~r---------NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 252 -VCGATAPSYQALKDGD-QFAIL-------TSKSKKTR---------NPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred -cccCCCCcccccCCCC-eeEEe-------eeeccccC---------CccceeEeccccccceeEcCCCceEEEEecCce
Confidence 111111111 12222 11111 11110000 022222223447899999999999999999999
Q ss_pred EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
++|||+.+.+++..++..-+...|++|||||++|++|++|.-|.||.+...+.+..-.+|.+.|..++|.
T Consensus 314 LRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 314 LRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 9999999999999999888999999999999999999999999999999999999999999999999998
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-15 Score=125.32 Aligned_cols=236 Identities=15% Similarity=0.157 Sum_probs=182.5
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.-..+|+|.+ +.++... ++++.....+.||.....+ ...++..|...|+.+.|+|... .|++++.|..-++|.
T Consensus 8 ~~~~pitchA--wn~drt~-iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 8 RLLEPITCHA--WNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT 83 (361)
T ss_pred eccCceeeee--ecCCCce-EEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence 3456788887 7777777 8999999999999876654 6678889999999999999976 799999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE----EEeecCCcEEEEEEcc
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV----TFRGHKRGIWSVEFSP 546 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~s~ 546 (706)
...+. ..+....+..++...+++.|+|.++.+|+|+....|.||-++....-- .-+.+...|+++.|+|
T Consensus 84 ~~~~~-------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 84 QPSGG-------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred cCCCC-------eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 85432 444666777788999999999999999999999999999876543321 2234677899999999
Q ss_pred CCCEEEEecCCCcEEEEEcC------------------CCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 547 VDQVVITASGDKTIKIWSIS------------------DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
++-+|++|+.|+..+|+..- -|+++.++....+.+..+.|+|+|..|+-.+.|..+.+-|..
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999999999999998741 123344554566789999999999999999999999999987
Q ss_pred CCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 609 TGE-CIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 609 ~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
... .+.......-+..++.|-.+. .++.++.|
T Consensus 237 ~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 237 GPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred CCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 664 344443333566677665433 23334444
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-15 Score=129.64 Aligned_cols=270 Identities=12% Similarity=0.143 Sum_probs=190.4
Q ss_pred ceeeEeeEeCCCCcEEEEEe-cCCcEEEEeCCCceeeEe------eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 354 EEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSYV------LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~-~~~~i~~~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+..++|..+++.-+..+. .+..+..+.......... ......+|..+. ..+.. |++|-.+|.+.+|
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~----~~dg~-Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK----LADGT-LITCVSSGNLQVR 130 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh----hcCCE-EEEEecCCcEEEE
Confidence 34455555544443444443 445555555554433322 233445555553 22334 8888999999999
Q ss_pred eCCCce----EEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 427 DSESRC----CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 427 d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
..+.+. .+..+. ....+..+.-++..+.++++|+.. ..+.+||+......- ...+.+....-..-.-.++.+
T Consensus 131 ~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw-~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW-SAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred eccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeee-eccCCCCccccceeeeeeccc
Confidence 988432 222222 235666677777777788889999 899999998763111 111111111111123457788
Q ss_pred EEcCC--CCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-Eee
Q 005254 501 AVAPN--DSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEG 576 (706)
Q Consensus 501 ~~s~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 576 (706)
.|-+. ...+++++.-+.+++||.+.+ +++..+.-...+++++...|+++++++|..-|.+..+|++.++.+.. +.+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 89887 889999999999999999865 67788888889999999999999999999999999999999988776 888
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
-.+.|+++..+|.+++|++++-|..|+|+|+++.+++..... ...+++|.+.++
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 889999999999999999999999999999999777655432 345566666544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-14 Score=119.62 Aligned_cols=291 Identities=18% Similarity=0.194 Sum_probs=185.9
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC--
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-- 178 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-- 178 (706)
...+..++|++.-.-+|++..|-.|++||-.+ +....++ .....|++++|-|.+.. .++.|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsas-elavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSAS-ELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcc-eeeeeecce-eEEEEcCcccc
Confidence 45678899999777788999999999999877 4444444 34677999999998654 577788777 999976421
Q ss_pred --ee----------EEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 179 --KC----------VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 179 --~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+. +..-++| .+|++|.|.+||..+++++. +..|.+||.+++..+...
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~------------------- 234 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI------------------- 234 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-------------------
Confidence 11 1122344 68999999999999988874 567888887765433211
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
T Consensus 235 -------------------------------------------------------------------------------- 234 (445)
T KOG2139|consen 235 -------------------------------------------------------------------------------- 234 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeee
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 405 (706)
...-+.+.-+.
T Consensus 235 -------------------------------------------------------------------~~glgg~slLk-- 245 (445)
T KOG2139|consen 235 -------------------------------------------------------------------PKGLGGFSLLK-- 245 (445)
T ss_pred -------------------------------------------------------------------ccCCCceeeEE--
Confidence 01111222333
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
++|++.. ++++.-|+..++|+..............+.|...+|+|.|+.+|++.+..-.++-..+.........+...+
T Consensus 246 wSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDV-LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCE-EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccce
Confidence 7888888 777888999999965443322222334459999999999998888887666555444433322111111111
Q ss_pred eeEE---------E---eecCcceEEEEEcCCCCEEEEeeCCCc--------EEEEeCCCccEEEEEe-e--cCCcEEEE
Q 005254 486 AKAV---------V---AAHGKDINSLAVAPNDSLVCTGSQDRT--------ACVWRLPDLVSVVTFR-G--HKRGIWSV 542 (706)
Q Consensus 486 ~~~~---------~---~~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~i~d~~~~~~~~~~~-~--~~~~v~~~ 542 (706)
.... . .--.+++.+++|.|.|.+||+....+. |.+||....-.+.... + .......+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 1110 0 112567899999999999999765543 6667765443332221 1 11124456
Q ss_pred EEcc---CCCEEEEecCCCcEEEEEc
Q 005254 543 EFSP---VDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 543 ~~s~---~~~~l~~~~~dg~i~iwd~ 565 (706)
.|+| ++.+|..+=..|.+.-|++
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeee
Confidence 6666 4566666666777777765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=128.19 Aligned_cols=211 Identities=13% Similarity=0.185 Sum_probs=165.8
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCC--
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQD-- 515 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d-- 515 (706)
....+|..++.... .|++|-.+|.+.+|....+.... ...........+..+.-++.. .++++|+..
T Consensus 103 l~~~~I~gl~~~dg---~Litc~~sG~l~~~~~k~~d~hs-------s~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~ 172 (412)
T KOG3881|consen 103 LGTKSIKGLKLADG---TLITCVSSGNLQVRHDKSGDLHS-------SKLIKLATGPGLYDVRQTDTDPYIVATGGKENI 172 (412)
T ss_pred cccccccchhhcCC---EEEEEecCCcEEEEeccCCcccc-------ccceeeecCCceeeeccCCCCCceEecCchhcc
Confidence 34556666665544 79999999999999988653221 111112223455566666644 455668888
Q ss_pred CcEEEEeCCCccEEEEEeecC---------CcEEEEEEccC--CCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEE
Q 005254 516 RTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPV--DQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~ 583 (706)
..+.+||+...+++..-+... -.++++.|-+. ...||+++.-+++++||.+.+ +++..+.....++++
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 789999999886665544321 23678889887 789999999999999999876 567888878889999
Q ss_pred EEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 584 ASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+...|+|+++++|..-|.+..||++.++.+.. +.+..+.|+++..+|..++|+++|-|..++|+|+.+.+......
T Consensus 253 ~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 253 TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 99999999999999999999999999998877 88999999999999999999999999999999999976665544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-14 Score=137.50 Aligned_cols=236 Identities=11% Similarity=0.067 Sum_probs=160.2
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.++|........ +..+...+.... ++|+++.++++.. .+..+.+|++.+++.... ....+.+...+|+|+|
T Consensus 179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFV-VHRSPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEE-eecCCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCC
Confidence 368888887655443 334555666666 8999998554433 235799999988764432 2233445578999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-Cc--EEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~ 528 (706)
+.++++.+.+| .|.+||+..+. ...+..+...+....|+|||+.|+..+.+ +. |+++|+.+++.
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCC-----------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 96666655555 48888886542 22223334457889999999988877654 44 55557766644
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC---E
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL---V 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i 602 (706)
. .+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+.. ........|+|||++|+..+.++. +
T Consensus 324 ~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 Q-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 3 333344456678999999998876543 35889999887644 3332 122346789999999999988864 6
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
.++++ +|+....+..|.+.+...+|+|
T Consensus 401 ~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 77777 5666677888888899999987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=123.05 Aligned_cols=150 Identities=18% Similarity=0.266 Sum_probs=113.2
Q ss_pred EEEEEcCCCCEEEEeeC----------CCcEEEEeCCC-ccEEEEEee-cCCcEEEEEEccCCCEEEEe--cCCCcEEEE
Q 005254 498 NSLAVAPNDSLVCTGSQ----------DRTACVWRLPD-LVSVVTFRG-HKRGIWSVEFSPVDQVVITA--SGDKTIKIW 563 (706)
Q Consensus 498 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~--~~dg~i~iw 563 (706)
..+.|+|+|.+|++-.. -+...+|.++. ......+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988876443 13355555522 233444433 34579999999999987654 456799999
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
|++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||.++.+.+..... . .++.++|||||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-S-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-C-cEEEEEEcCCCCEEEEEEe
Confidence 996 77777764 5678899999999999998754 5699999999998877643 3 4789999999999998764
Q ss_pred ------CCcEEEEECCch
Q 005254 641 ------DALVNLWHDSTA 652 (706)
Q Consensus 641 ------dg~i~vw~~~~~ 652 (706)
|+.++||++...
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 889999999644
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-14 Score=128.50 Aligned_cols=281 Identities=15% Similarity=0.171 Sum_probs=195.2
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.+......+..+++..-.+++|.....|++||+.+......-......|.-.- .+.+-.. ++.-..|.+|.+-.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~fei--LsDD~SK-~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEI--LSDDYSK-SVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEE--eccchhh-heEeecCceeeehhhc-
Confidence 34556667788887777788899999999999998776554433333443321 2222222 4444455555543221
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
|.....- -...-..++++.-... |+.++....|+-+++..+. ....+......++++.+++...+|+
T Consensus 125 G~hy~~R--IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr----------fL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 125 GRHYRTR--IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR----------FLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred Ceeeeee--cCcCCccccccCCCcc-EEEeecCcceEEEEccccc----------cccccccccccceeeeecCccceEE
Confidence 1111110 0112233444433332 4555555567777887664 3444455567899999999999999
Q ss_pred EeeCCCcEEEEeCCCccEEEEEee------cCC-----cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-
Q 005254 511 TGSQDRTACVWRLPDLVSVVTFRG------HKR-----GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT- 578 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 578 (706)
+|+.+|.|..||.+.......+.. |.+ .|+++.|+.+|-.+++|..+|.+.|||+++.+++..-. |.
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC
Confidence 999999999999988766665542 333 49999999999999999999999999999988876544 43
Q ss_pred -cCEEEEEEEeC--CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 579 -SSVLRASFLTR--GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 579 -~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
-+|..+.|.+. +..+++. ....++|||-.+|+....+.. ...++.+++-|++.+++++-+++.+..|=++.
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 47888899775 3455554 346899999999999988876 44599999999999999999998888776654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-09 Score=114.58 Aligned_cols=518 Identities=15% Similarity=0.128 Sum_probs=292.6
Q ss_pred cceEEcCCCCEEEEeeCC-e----EEEEEccCCe---EEEeec-----CCCccEEEEEEccCCCEEEEEeccCeEEEE--
Q 005254 23 GPLVVSSDGSFIACACGE-S----INIVDLSNAS---IKSTIE-----GGSDTITALALSPDDKLLFSSGHSREIRVW-- 87 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~----i~i~d~~~~~---~~~~l~-----~~~~~i~~l~~s~~~~~l~s~~~d~~i~iw-- 87 (706)
.+.+|.++.+.+.++.+. . |.+-...... .+..+. .....|.++.+-++..-++.+..+|.|.+.
T Consensus 25 ~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~ 104 (928)
T PF04762_consen 25 TATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILVRE 104 (928)
T ss_pred ceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEEEc
Confidence 356777777666666554 2 2333322221 233332 235689999999999999999999999999
Q ss_pred --ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC---------------C--------CeEEEEeeC
Q 005254 88 --DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD---------------G--------GFCTHYFKG 142 (706)
Q Consensus 88 --d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~---------------~--------~~~~~~~~~ 142 (706)
+..+... .....-...|.+++||||+..||..+.++++.+-+-+ . |+.-..|+|
T Consensus 105 ~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~G 183 (928)
T PF04762_consen 105 DPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHG 183 (928)
T ss_pred cCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCc
Confidence 5444322 2222245899999999999999999988888776421 0 011111111
Q ss_pred ------------------------CCCcEEEEEEcCCCCceEEEEEec------CCeEEEEECCCCeeEEEeecccceEE
Q 005254 143 ------------------------HKGVVSSILFHPDTDKSLLFSGSD------DATVRVWDLLAKKCVATLDKHFSRVT 192 (706)
Q Consensus 143 ------------------------~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~ 192 (706)
+...-..++|-.||.. +|+.+. -..++||+- +|....+...-.+--.
T Consensus 184 s~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y--FAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~ 260 (928)
T PF04762_consen 184 SAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY--FAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEG 260 (928)
T ss_pred chhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE--EEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccC
Confidence 1223466888888776 666553 268999995 4765555444445556
Q ss_pred EEEEecCCCEEEEEeC---CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 193 SMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
+++|-|.|+++++... ...|.+|.-...+ ...+.
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~------------------------------------------ 297 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-HGEFT------------------------------------------ 297 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEe------------------------------------------
Confidence 7899999999888764 2344444422111 10000
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
.........+..+.+++++..|++...+. +.+|....- .......+
T Consensus 298 ----------------------------l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-----HWYLKqei 343 (928)
T PF04762_consen 298 ----------------------------LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY-----HWYLKQEI 343 (928)
T ss_pred ----------------------------cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC-----EEEEEEEE
Confidence 01112234457788888888888877555 888876643 11122222
Q ss_pred c-ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 350 V-GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 350 ~-~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
. .....+..+.|.+.+...|.+.+.+|.+..++..-.... +.. ..|.+.- .+..-+..++.+-.+
T Consensus 344 ~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~~---------~~~~D~g-~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 344 RFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SPG---------SSPNDNG-TVAVIDGNKLLLTPF 409 (928)
T ss_pred EccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cCC---------CCccCce-EEEEEeCCeEEEecc
Confidence 2 222334458999998888999888888877664311110 000 1111111 111111123333333
Q ss_pred CCc-----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC-Cccccccee-------EEEeecCc
Q 005254 429 ESR-----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAK-------AVVAAHGK 495 (706)
Q Consensus 429 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~ 495 (706)
... -....+. ....|.+++|++++. .+++...||.+.+|......... ..+...... ........
T Consensus 410 ~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (928)
T PF04762_consen 410 RRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLG 487 (928)
T ss_pred cccCCCchHhceEEc-CCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccc
Confidence 321 1112222 357899999999976 58889999999999976543221 011000000 01122345
Q ss_pred ceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCcc---EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 496 DINSLAVAPNDSLVCTGSQD---RTACVWRLPDLV---SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
.+..++|..+..+++....+ ..+.++++...+ .......-...+..+...++...++.-..+|.+...+.....
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 488 SLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred cEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 57888888888777766654 568888874332 233333344556566666655556666778988866654332
Q ss_pred e-EEEEeecccCEEEEEEEeCCC---EEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 005254 570 C-LKTFEGHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVN 645 (706)
Q Consensus 570 ~-~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 645 (706)
. +..+......+ .+....+.. .++.-+..|.+++ +++.+. ..+++..+ .+.+|+.......++
T Consensus 568 ~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v--~~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 568 SQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAV--TDSFLLFTTTQHTLK 634 (928)
T ss_pred cccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEE--EcCEEEEEecCceEE
Confidence 2 22232211222 222222322 3444444555553 344432 45677776 455666666677788
Q ss_pred EEECC
Q 005254 646 LWHDS 650 (706)
Q Consensus 646 vw~~~ 650 (706)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 88888
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-12 Score=111.45 Aligned_cols=234 Identities=14% Similarity=0.207 Sum_probs=172.4
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-Eec------cCeEEEEECCCCeEEEE
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGH------SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~------d~~i~iwd~~~~~~~~~ 97 (706)
++|..|..-++++.+...+||+.+.-+.....+.+...+.-+..--..++||- ||. .+.|.|||=...+++.+
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~e 90 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIE 90 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEE
Confidence 89999999999999999999998654432222222222222222223456653 332 35799999777788888
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-EecCCeEEEEEC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-GSDDATVRVWDL 175 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~ 175 (706)
+. ...+|.++.++++. |++.- .+.|.||... +.+.++.+.....+=--++..|.....+|+. |-.-|.|.|-|+
T Consensus 91 l~-f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 91 LS-FNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EE-eccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 87 66899999999764 55554 5789999997 5666666654332322344455544444544 556799999999
Q ss_pred CCCee--EEEeecccceEEEEEEecCCCEEEEEeCCCE-EEEEeCCCCcceeeecC---cceeeeEEeeCCCCCcccccc
Q 005254 176 LAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVPT---YEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 176 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 249 (706)
...+. ...+..|.+.|.|++.+.+|..+++++..|+ |++||..++..+.++.. ...+.+++++++.+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s------- 239 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS------- 239 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-------
Confidence 76655 4678899999999999999999999999885 79999999999888754 45688899999987
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
.++++++.|++.++.+....
T Consensus 240 ----------------~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 240 ----------------WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----------------EEEEEcCCCeEEEEEeecCC
Confidence 78999999999999987753
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-13 Score=122.15 Aligned_cols=315 Identities=13% Similarity=0.183 Sum_probs=196.6
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-----e-----ccCeEEEEECCCCe
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-----G-----HSREIRVWDLSTLK 93 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-----~-----~d~~i~iwd~~~~~ 93 (706)
..++|++|+++|+..+..+.|++..++..+.+...- .+.++.|||-|.+|.+= . ....+.+|+++++.
T Consensus 39 v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 588999999999999999999999988655544432 78999999999999762 1 13468899999976
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-----EecCC
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-----GSDDA 168 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg 168 (706)
....+......-.+..|++|..+.|-. ..+.+.+|+..+.+.+.. +-|...|..+.++|......+++ .+.-+
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa 194 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPA 194 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCc
Confidence 666665433333689999998654432 357799999987443322 23788899999999766555654 34557
Q ss_pred eEEEEECCCCeeEEEe---ecccceEEEEEEecCCCEEE-EEeC--C---------CEEEEEeCCCCcceeeecCcceee
Q 005254 169 TVRVWDLLAKKCVATL---DKHFSRVTSMAITSDGSTLI-SAGR--D---------KVVNLWDLRDYSCKLTVPTYEMVE 233 (706)
Q Consensus 169 ~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~-~~~~--d---------g~i~~w~~~~~~~~~~~~~~~~~~ 233 (706)
.|++|..........+ .-....=..+.|++-|.-|+ .++. | ..+++.+++..+..-.+...
T Consensus 195 ~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~---- 270 (566)
T KOG2315|consen 195 SVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE---- 270 (566)
T ss_pred EEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC----
Confidence 8999987532211111 00112233567777665332 2221 2 23444444422333333333
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEc
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (706)
T Consensus 271 -------------------------------------------------------------------------------- 270 (566)
T KOG2315|consen 271 -------------------------------------------------------------------------------- 270 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE-EecCCcEEEEeCCCceeeEee
Q 005254 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV-ATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~~~~i~~~d~~~~~~~~~~ 392 (706)
++|.++.|++....+.++ |..--.+.++|+...-..
T Consensus 271 ----------------------------------------GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~--- 307 (566)
T KOG2315|consen 271 ----------------------------------------GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF--- 307 (566)
T ss_pred ----------------------------------------CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---
Confidence 344444444433222222 233345555655433222
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec-C-----CC
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-S-----DH 464 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-----d~ 464 (706)
.-..++-.++- ++|.++.++++|- -.|.+.+||..+.+++..+... .-+-+.|+|+|+ +++++. . |+
T Consensus 308 df~egpRN~~~--fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe-~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 308 DFPEGPRNTAF--FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGE-YFLTATTAPRLRVDN 382 (566)
T ss_pred eCCCCCccceE--ECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCc-EEEEEeccccEEecC
Confidence 22223333333 7888888666654 3589999999998888776543 345689999999 455443 3 78
Q ss_pred eEEEEEecCC
Q 005254 465 TIKVWSFDGL 474 (706)
Q Consensus 465 ~i~i~~~~~~ 474 (706)
.++||++...
T Consensus 383 g~KiwhytG~ 392 (566)
T KOG2315|consen 383 GIKIWHYTGS 392 (566)
T ss_pred CeEEEEecCc
Confidence 8999998764
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-14 Score=127.81 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=206.0
Q ss_pred CCccEEEEEEccCCCEEE-EEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 59 GSDTITALALSPDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
|+..-+.|..+|||+|+. +|.....|++||+.+..+...-.-....|.-.-.+.|-..++.-..|.+|-+..-. |.-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee
Confidence 566778999999999965 56678999999998866544333334566666677777777777788888765432 2211
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
. ++ -...-..++++.-.-. |+.++....|+-.+++.|+.+..+....+.++++..++-..+|++|+.+|.|.+||.
T Consensus 129 ~-~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 129 R-TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred e-ee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 1 11 1122234555433223 666667777999999999999999888899999999999899999999999999999
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
++.+.+..+.....+....
T Consensus 205 R~ksrv~~l~~~~~v~s~p------------------------------------------------------------- 223 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHP------------------------------------------------------------- 223 (703)
T ss_pred hhhhhheeeecccccCCCc-------------------------------------------------------------
Confidence 9877666554332211100
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
.......|.++.|.. ++-.+++|+..|.
T Consensus 224 ---------------------------------------------------g~~~~~svTal~F~d-~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 224 ---------------------------------------------------GGDAAPSVTALKFRD-DGLHVAVGTSTGS 251 (703)
T ss_pred ---------------------------------------------------cccccCcceEEEecC-CceeEEeeccCCc
Confidence 001123456666654 4778889999999
Q ss_pred EEEEeCCCceeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 456 (706)
+.+||+.+.+++..- .+..-+|..++|.-. ++.. .+.......++|||-.+|+....+... ..+..+++-|++. +
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sG-m 327 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQN-KVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSG-M 327 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeeccccc-CCCc-eEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCc-e
Confidence 999999887766432 234456777774333 2333 444556778999999999988876644 4599999999987 8
Q ss_pred EEEecCCCeEEEEEecCCC
Q 005254 457 LVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~ 475 (706)
++++-.+..+..|-++...
T Consensus 328 ~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLG 346 (703)
T ss_pred EEEecCCCcceeEEccccC
Confidence 8899888888888776554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-14 Score=119.59 Aligned_cols=152 Identities=18% Similarity=0.306 Sum_probs=112.8
Q ss_pred ceEEcCCCCEEEEeeCC-------------eEEEEEccCCeEEEeecC-CCccEEEEEEccCCCEEEEE--eccCeEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------SINIVDLSNASIKSTIEG-GSDTITALALSPDDKLLFSS--GHSREIRVW 87 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~~~~~l~s~--~~d~~i~iw 87 (706)
.+.++|+|++|++-... .|..++.... ....+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 58899999998876551 2444444433 3343432 34579999999999987655 346799999
Q ss_pred ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
|++ ++.+..+. ...+..+.|||+|++|++++. .|.|.+||.++.+.+.... | ..++.++|+|+|+. ++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~--~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRY--LATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCE--EEEE
Confidence 996 67766665 567889999999999999874 4679999999988887765 3 34789999999987 5555
Q ss_pred e------cCCeEEEEECCCCeeEEEe
Q 005254 165 S------DDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 165 ~------~dg~i~vwd~~~~~~~~~~ 184 (706)
. .|+.++||+. .|+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEe-cCeEeEec
Confidence 4 3788999998 46655443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=119.91 Aligned_cols=158 Identities=13% Similarity=0.170 Sum_probs=113.9
Q ss_pred EEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec
Q 005254 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 121 (706)
...|+...+.....-.-..-.-+-+.|||-|.||++--..| |.+|--++...++.|. | ..|.-+.|||+.+||++-+
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s 268 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYS 268 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEec
Confidence 56677655433222222334568899999999999987665 8999888888888777 5 5688999999999999975
Q ss_pred C-----------CCcEEEEECCCCeEEEEeeCCCC--c-EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 122 A-----------DRKVLVWDVDGGFCTHYFKGHKG--V-VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 122 ~-----------d~~i~vw~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
. ...++|||+.+|.....|....+ . -.-..||.|+++ +|.-.. ..|.||+..+..++..-.-.
T Consensus 269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy--~Arm~~-~sisIyEtpsf~lld~Kslk 345 (698)
T KOG2314|consen 269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY--FARMTG-NSISIYETPSFMLLDKKSLK 345 (698)
T ss_pred CCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce--eEEecc-ceEEEEecCceeeecccccC
Confidence 2 25799999999998888775322 2 345679998876 665555 45999998765544333334
Q ss_pred cceEEEEEEecCCCEEEE
Q 005254 188 FSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~ 205 (706)
-..|....|+|.+..|+-
T Consensus 346 i~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 346 ISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred CccccCcccCCCcceEEE
Confidence 567888999998665553
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-13 Score=131.26 Aligned_cols=215 Identities=13% Similarity=0.047 Sum_probs=145.0
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
.|.++|........ +..+...+...+|+|+|+.++++.. .+..+.+|++..+. ...+.........
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----------~~~l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----------VRQVASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----------eEEccCCCCCcCC
Confidence 68888887654433 3446678999999999985544432 24578889887642 1111222333456
Q ss_pred EEEcCCCCEEEEe-eCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEE
Q 005254 500 LAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKT 573 (706)
Q Consensus 500 ~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~ 573 (706)
..|+|||+.|+.. +.+| .|++||+.+++.... ..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 8999999988865 4444 588999988765443 3344567889999999988776654 4 455557766544 33
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLW 647 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vw 647 (706)
+..+........|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.++. +.++
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 33344455678999999999876654 35889999888754 33321 22346789999999998887765 6677
Q ss_pred ECCch
Q 005254 648 HDSTA 652 (706)
Q Consensus 648 ~~~~~ 652 (706)
+++..
T Consensus 404 ~~~G~ 408 (429)
T PRK03629 404 STDGR 408 (429)
T ss_pred ECCCC
Confidence 77533
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-13 Score=134.89 Aligned_cols=239 Identities=13% Similarity=0.088 Sum_probs=156.3
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.++|.... ....+..+...+.... ++|+++.++++...+ ..|.+||+.+++.... ....+.....+|+|+|
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 45777776433 3334445566676666 889998844444333 3599999998876543 3344566789999999
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeC--CCccEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRL--PDLVSVV 530 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~~ 530 (706)
+.++++.+.+|...+|.++.... ....+..+........|+|||+.|+..+. +|...+|.+ .++....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~---------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGS---------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCC---------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 86667788888878877653211 11222223344567889999998886654 455566644 4444322
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CEEE
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKL 604 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i 604 (706)
+..+.......+|+|||++|+..+.++ .|.+||+.+++...... ........|+|||++|+..+.++ .+.+
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 222223344678999999998776654 69999998876543322 22346789999999998877654 3556
Q ss_pred EECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 605 WTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
.++ +|+....+..+.+.+...+|+|-
T Consensus 400 ~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 400 VSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEC-CCCceEEeecCCCCCCCCccCCC
Confidence 666 56666666667777888888873
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=135.20 Aligned_cols=236 Identities=16% Similarity=0.098 Sum_probs=157.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..+.+||...... ..+..+...+.... ++|+++.++.+... +..|++||+.+++.... ....+...+.+|+|+|
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCcccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCC
Confidence 3578888764433 34455566666666 88999884444332 34699999988765433 3334455678999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCc--EEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRT--ACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~~ 528 (706)
+.++++.+.+| .|++||+..+. ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 86666666665 58888886542 2222333344567899999998887764 444 77777766654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLV 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i 602 (706)
.. +..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|
T Consensus 329 ~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L 405 (433)
T PRK04922 329 ER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVL 405 (433)
T ss_pred EE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 33 222333445689999999998765433 6999999877655 333 32344567999999998877664 368
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
.++++. +.....+..+.+.+...+|+|
T Consensus 406 ~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEECC-CCceEEcccCCCCCCCCccCC
Confidence 888884 555566666667777778876
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-13 Score=132.36 Aligned_cols=216 Identities=9% Similarity=-0.023 Sum_probs=148.5
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..|.++|.... ....+..+...+...+|+|+|+.++++.. .+..|.+|++..+. ...+..+...+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPGMTF 249 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCCccc
Confidence 36888887544 44455677889999999999984444432 34689999987652 223334455677
Q ss_pred EEEEcCCCCEEE-EeeCCCc--EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEE
Q 005254 499 SLAVAPNDSLVC-TGSQDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~ 572 (706)
..+|+|||+.|+ +.+.++. |++||+.++.. ..+..+........|+|||+.|+..+. +| .|+++|+.+++..
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~- 327 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR- 327 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-
Confidence 889999998876 4455554 77789887755 445556666778999999998887664 33 6888898765543
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------Cc
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD------AL 643 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~ 643 (706)
.+..+...+....|+|||++|+....+ ..|.+||+.++.. ..+.. ...+....|+|||++|+..+.+ ..
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 343344556678999999999887654 3688889865543 33322 2346788999999988765543 25
Q ss_pred EEEEECCch
Q 005254 644 VNLWHDSTA 652 (706)
Q Consensus 644 i~vw~~~~~ 652 (706)
+.++++..+
T Consensus 406 L~~~dl~g~ 414 (435)
T PRK05137 406 LYTVDLTGR 414 (435)
T ss_pred EEEEECCCC
Confidence 777777654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-11 Score=109.34 Aligned_cols=116 Identities=20% Similarity=0.158 Sum_probs=86.6
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC----------CCcEEEEECCCCeEEEEeeCCC-------
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA----------DRKVLVWDVDGGFCTHYFKGHK------- 144 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~------- 144 (706)
+.|.+.|..+++.+.++..-..+- .+ +|||++.|+++.. +..|.+||..+++.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999988644443 34 9999999888754 6889999999999998876322
Q ss_pred CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 145 GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 145 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
.....++++|||+..+++--+.+..|.+.|+.+++.+..+.- |++..++..++++
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~ 159 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDT 159 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCc
Confidence 233578999998873333334488999999999998887753 5555555554443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-13 Score=130.73 Aligned_cols=235 Identities=12% Similarity=0.010 Sum_probs=157.8
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..|.++|..... ...+..+...+.... ++|+++.++.+.. .+..|.+||+.+++.. .+..+.+.+...+|+|+|
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~--wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPR--FSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeE--ECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC
Confidence 378888875443 345566777787777 8899998544443 2468999999888654 344556677889999999
Q ss_pred CeEEEEecCCCe--EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccE
Q 005254 454 QNFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~ 528 (706)
+.++++.+.++. |.+||+..+. ...+..+........|+|||+.++..+. +| .|+++|+.+++.
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~-----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGT-----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCc-----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 876677777666 5556665442 2223334445667899999999887764 33 588888876654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC------
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD------ 599 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 599 (706)
.. +..+...+....|+|||+.|+....+ ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+
T Consensus 327 ~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 327 RR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred EE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 33 33345556778999999999876543 3688889865443 3333 22346678999999998776543
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
..++++|+..+.. ..+.. .+.+...+|+|
T Consensus 404 ~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 2578888866554 34432 44566667766
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-09 Score=110.18 Aligned_cols=507 Identities=14% Similarity=0.133 Sum_probs=273.5
Q ss_pred ceEEcCCCCEEEEee-CCeEEEE----EccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--------
Q 005254 24 PLVVSSDGSFIACAC-GESINIV----DLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS-------- 90 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-~~~i~i~----d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~-------- 90 (706)
++.+-+|..-++++. ++.|.++ +..+... .....-...|.|++||||+..||.++.++++.+-+-.
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~ 158 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVP 158 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEee
Confidence 466777776555554 4577777 5444332 2222234689999999999999999989888876432
Q ss_pred -------C--------CeEEEEeec------------------------cCCCeEEEEECCCCCEEEEecC------CCc
Q 005254 91 -------T--------LKCLRSWKG------------------------HDGPAIGMACHPSGGLLATAGA------DRK 125 (706)
Q Consensus 91 -------~--------~~~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~------d~~ 125 (706)
. |+.-..|+| +...-..++|-.||+|+|+.+. -+.
T Consensus 159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 0 111111211 2224457899999999999763 257
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---CCeEEEEECCCCeeEEEe----ecccceEEEEEEec
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKCVATL----DKHFSRVTSMAITS 198 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~ 198 (706)
++||+-+ |.+...-..-.+--.+++|-|.|+. +++... ...|.+|.- +|-.-..+ ......|..+.|++
T Consensus 239 iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~l--IA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 239 IRVYSRE-GELQSTSEPVDGLEGALSWRPSGNL--IASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEECCC-ceEEeccccCCCccCCccCCCCCCE--EEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECC
Confidence 9999976 6655544444555578999998873 555543 356777764 44333333 23456899999999
Q ss_pred CCCEEEEEeCCCEEEEEeCCCCcce--eeecC--cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 199 DGSTLISAGRDKVVNLWDLRDYSCK--LTVPT--YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
|+..|+....|. |.+|-..+..-- +.+.. ......
T Consensus 315 ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~---------------------------------------- 353 (928)
T PF04762_consen 315 DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNF---------------------------------------- 353 (928)
T ss_pred CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCc----------------------------------------
Confidence 999999987666 999987765421 11111 111111
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCC-CeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSN-QGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
+.+.|.. ..+.+.+.++.+..++..-.....
T Consensus 354 -----------------------------------~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s------------- 385 (928)
T PF04762_consen 354 -----------------------------------VKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS------------- 385 (928)
T ss_pred -----------------------------------eEECCCCCCEEEEEecCCcEEEEEEEEEEEec-------------
Confidence 2233322 224444444555444332210000
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
-...+.+...+++... ..+.+-.+.. +.....+.. ..++..++ +.+.+.. +++-..||.+.+|..
T Consensus 386 -----~~~~~~D~g~vaVIDG-~~lllTpf~~a~VPPPMs~~~l~~-~~~v~~va--f~~~~~~-~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 386 -----PGSSPNDNGTVAVIDG-NKLLLTPFRRAVVPPPMSSYELEL-PSPVNDVA--FSPSNSR-FAVLTSDGSLSIYEW 455 (928)
T ss_pred -----CCCCccCceEEEEEeC-CeEEEecccccCCCchHhceEEcC-CCCcEEEE--EeCCCCe-EEEEECCCCEEEEEe
Confidence 0000111112222221 3334333322 112222222 34677776 7777777 888889999999885
Q ss_pred CCceEE--------EEE----------eCCCcCeEEEEEecCCCeEEEEecC---CCeEEEEEecCCCCCCCccccccee
Q 005254 429 ESRCCV--------GVG----------TGHMGAVGAVAFSKKLQNFLVSGSS---DHTIKVWSFDGLSDDAEQPMNLKAK 487 (706)
Q Consensus 429 ~~~~~~--------~~~----------~~~~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~ 487 (706)
...... ..+ ......+..++|..+.. +++.... ...+.++++..... ....
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~ 527 (928)
T PF04762_consen 456 DLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT-LLVLSDSDSNQSKIVLVDIDDSEN-------SASV 527 (928)
T ss_pred cCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE-EEEEEecCcccceEEEEEeccCCC-------ceeE
Confidence 432211 111 12344577788887765 4443333 36778887743321 1122
Q ss_pred EEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE-EEEEeecCCcEEEEEEccCC--CEEEEecCCCcEEEEE
Q 005254 488 AVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFRGHKRGIWSVEFSPVD--QVVITASGDKTIKIWS 564 (706)
Q Consensus 488 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd 564 (706)
.........+..+...++...++.-..+|.+...+...... +..+......+....+.... ..++.-+..|.+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~-- 605 (928)
T PF04762_consen 528 ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA-- 605 (928)
T ss_pred EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE--
Confidence 22333344455555555555577777789888666544322 22233222222222222222 13333344444433
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEecc-----CCCcEEEEEEcCCCCEEEEE
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDK-----HEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 638 (706)
++..+ ...++++.+. +.+|+.......+++.++. .-+.+..... +...+..+ ..|..|+++
T Consensus 606 --n~~~l------a~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~ 672 (928)
T PF04762_consen 606 --NSRLL------ASNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTA 672 (928)
T ss_pred --CCEEE------ecCCceEEEE--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEE
Confidence 22222 2456666664 4588888888889999987 2222221111 11122332 357778877
Q ss_pred eCCCcEEEEECCchhHHHH
Q 005254 639 GSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 639 ~~dg~i~vw~~~~~~~~~~ 657 (706)
-....=.|-.++.|..+..
T Consensus 673 vp~~~~vVLQmPRGNLEtI 691 (928)
T PF04762_consen 673 VPSDTSVVLQMPRGNLETI 691 (928)
T ss_pred eCCCceEEEEcCCCchhhh
Confidence 6555555667776665543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-13 Score=132.51 Aligned_cols=215 Identities=14% Similarity=0.064 Sum_probs=144.2
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC--CCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..|.+||..... ...+..+...+.+.+|+|+++.++++... +..|.+|++..+. ...+........
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g~~~ 251 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRGING 251 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCCCcc
Confidence 358889986443 34455667789999999999844444322 3468999987652 122222333455
Q ss_pred EEEEcCCCCEEEE-eeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCc--EEEEEcCCCceEE
Q 005254 499 SLAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKT--IKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~ 572 (706)
+.+|+|||+.++. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+..+. +|. |+++|+.+++...
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 7899999987764 45555 5999999887643 44445555677899999998887654 444 7777776665433
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CcEEE
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD---ALVNL 646 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v 646 (706)
+..+.......+|+|||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.+
T Consensus 331 -lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 331 -LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred -eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 222333445689999999998765443 6999999888765 332 22234567899999988866653 45777
Q ss_pred EECCc
Q 005254 647 WHDST 651 (706)
Q Consensus 647 w~~~~ 651 (706)
+++..
T Consensus 408 ~~~~g 412 (433)
T PRK04922 408 VSTDG 412 (433)
T ss_pred EECCC
Confidence 77754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=132.56 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=135.1
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
..+.++|.. +.....+..+...+.+.+|+|+|+.++++...+ ..|.+||+..+. ...+........
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g~~~ 243 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKGSNS 243 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCCCcc
Confidence 357777764 333344456777899999999998444443333 469999987652 122222334567
Q ss_pred EEEEcCCCCEEEE-eeCCCcEEEEe--CCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEc--CCCceEE
Q 005254 499 SLAVAPNDSLVCT-GSQDRTACVWR--LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI--SDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~~l~~-~~~dg~i~i~d--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~--~~~~~~~ 572 (706)
..+|+|||+.|+. .+.+|...||. +..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++..
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~- 321 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ- 321 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-
Confidence 8999999998874 56777766654 44443 4445545555677899999998876554 455666654 444432
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
.+..+........|+|||++|+..+.++ .|.+||+.+++....... .......|+|||++|+.++.++
T Consensus 322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence 2222223344678999999998877654 599999988875433322 2346789999999988766544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-13 Score=114.02 Aligned_cols=237 Identities=16% Similarity=0.213 Sum_probs=148.0
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-E--EEEEeC-----CCcCeEEEEEecCCCeEEEEecCCCe
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-C--VGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
.|.-.+.++. +.++... ++ ..+|-+|.+|+++-.. . +..+++ -..-|++..|+|...++++-.+..|+
T Consensus 162 aHtyhiNSIS--~NsD~Et-~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 162 AHTYHINSIS--VNSDKET-FL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred cceeEeeeee--ecCccce-Ee-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 4666677776 6666665 33 3457788899876322 1 111222 24568889999988889999999999
Q ss_pred EEEEEecCCCC------CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC-CCccEEEEEeecCC-
Q 005254 466 IKVWSFDGLSD------DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL-PDLVSVVTFRGHKR- 537 (706)
Q Consensus 466 i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~- 537 (706)
|++.|++.... ..+.+........+...-..|..+.|+++|+++++-+. -+|++||+ ...+++.+++-|..
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 99999984321 11111111222233344467889999999999998754 57999999 56677777766532
Q ss_pred -----------cE---EEEEEccCCCEEEEecCCCcEEEEEcCCCceE-EEEeecccC--EEEEEEEeCCCEEEEEeCCC
Q 005254 538 -----------GI---WSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFEGHTSS--VLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 538 -----------~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg 600 (706)
.| ..++|+.++.++++|+....++++++..|... .++...... ...+ ..-+.+.+++...
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~ 393 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRK 393 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcc
Confidence 22 45789999999999999999999997666432 233322221 1111 1112344444443
Q ss_pred CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 601 LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
...+| +..+ .....+...+|+|..+.++.+...+ +.++
T Consensus 394 ~~~~~-------vd~l-df~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 394 RDEIS-------VDAL-DFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccc-------cchh-hhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 32221 1111 2234567788999999888777554 5554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-10 Score=103.69 Aligned_cols=438 Identities=14% Similarity=0.124 Sum_probs=240.8
Q ss_pred cCCCeEEEEECCC--CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-------EecCCeEE
Q 005254 101 HDGPAIGMACHPS--GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-------GSDDATVR 171 (706)
Q Consensus 101 ~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-------~~~dg~i~ 171 (706)
|.-.....-..|| |..+...+.|- +..+++.+|+... +..|-+.|+...|+|+|.. ++. +..-+.+.
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~r-itS~lGVvnn~kf~pdGrk--vaf~rv~~~ss~~taDly 110 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLR-ITSGLGVVNNPKFSPDGRK--VAFSRVMLGSSLQTADLY 110 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeE-EecccceeccccCCCCCcE--EEEEEEEecCCCccccEE
Confidence 3333334445664 44444444333 5556677787554 4558899999999999886 333 23345688
Q ss_pred EEECCCCeeEEEeecccceEEE-EEEecCCCEEEEEeCCCEEE----EEeCCCCcc-eeeecCcceeeeEEeeCCCCCcc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTS-MAITSDGSTLISAGRDKVVN----LWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~----~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+.+.+.|+..+..-- ....+. .-|.|||+.+++...-.-.. +|.+..... ...++... ...+ ...++ ...
T Consensus 111 ~v~~e~Ge~kRiTyf-Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGp-athi-v~~dg-~iv 186 (668)
T COG4946 111 VVPSEDGEAKRITYF-GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGP-ATHI-VIKDG-IIV 186 (668)
T ss_pred EEeCCCCcEEEEEEe-ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCc-eeeE-EEeCC-EEE
Confidence 888888876543222 233333 45899999888765433222 222221111 11111111 1111 11122 111
Q ss_pred cccccccchhhhccccccceEEEEecCCC--eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERG--IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
.....+....+...+......+..+...| .-++.|+++. +++-.+ -.++..+...
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~----------------------vS~PmI-V~~RvYFlsD 243 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGN----------------------VSSPMI-VGERVYFLSD 243 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCC----------------------cCCceE-EcceEEEEec
Confidence 11112222223333333333333322222 2233333322 111111 1111122222
Q ss_pred eCC--ceEEEEeeeccccceeeEEeeEecccCcee-eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC---C--
Q 005254 324 ADQ--QLLLYTTVEVPEKKMELILSKRLVGYNEEI-LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG---H-- 395 (706)
Q Consensus 324 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~---~-- 395 (706)
-+| +++--++.... +..|..-- .-..-.+.+++.++.. ..|.|++||..+......--+ .
T Consensus 244 ~eG~GnlYSvdldGkD-----------lrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk 311 (668)
T COG4946 244 HEGVGNLYSVDLDGKD-----------LRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRK 311 (668)
T ss_pred ccCccceEEeccCCch-----------hhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccc
Confidence 233 33333332221 11111000 0001112355555443 448999999987655432111 0
Q ss_pred -cc-----eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEEE
Q 005254 396 -SE-----IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIKV 468 (706)
Q Consensus 396 -~~-----~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i 468 (706)
.. +..-+.-....++.. ++..+ .|...+.+...+-.++. ++.+.|.-..+..++. -++.|..|| .+-+
T Consensus 312 ~k~~k~~~pskyledfa~~~Gd~-ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 312 KKQPKFVNPSKYLEDFAVVNGDY-IALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred cccccccCHHHhhhhhccCCCcE-EEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 00 111111001123333 44444 56677777666655543 4566688877777766 688888888 9999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
+|...+ ........-+.|.++..+++|++++++.....+.+.|+.++.....-+...+-|+.++|+|++
T Consensus 387 yd~~~~-----------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 387 YDKDGG-----------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred EecCCc-----------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc
Confidence 999876 455566667889999999999999999999999999999998877777778889999999999
Q ss_pred CEEEEecCCC----cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 549 QVVITASGDK----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 549 ~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
+++|-+.-+| .|+++|+..++....-. ..+-=.+-+|.||+++|..-+.
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 9999987766 59999998777654432 2233345588999998866553
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=117.03 Aligned_cols=246 Identities=15% Similarity=0.266 Sum_probs=171.0
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
....+.++.+.+.+....| .+.-++..+.|..+++|--.. ++.-..+. .-..+++++. +.++... |++|-..|+
T Consensus 16 ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~--y~~e~~~-L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAME--YVSESRR-LYVGQDNGT 91 (404)
T ss_pred hhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEee--eeccceE-EEEEEecce
Confidence 3455566666666666665 556678888899999996443 33222221 1233455555 6666666 899999999
Q ss_pred EEEEeC----CCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 423 VRLWDS----ESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 423 i~i~d~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+.-+.+ +.....+....|...+..+-|+.... .+++.+.|..+.---.+.+... ....+. ...+
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~l--------g~Y~~~---~~~t 159 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRL--------GGYNFE---TPAS 159 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcc--------cceEee---ccCC
Confidence 988854 44556666778999999999988755 7888888876653333322100 000010 0111
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce-EEEEe
Q 005254 499 SLAVAPNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFE 575 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 575 (706)
++.+.-. +...|...|.|..-.+ ....++.++.+|.+++++++|.|....|.+|..|..+.+||+.-.+- ..++.
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec
Confidence 1111111 5566767777666554 34578889999999999999999999999999999999999965433 45777
Q ss_pred ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 576 GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 576 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|...|..+...+--+.|++++.||.|.+|+.+
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 899999999988888999999999999999985
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-11 Score=115.34 Aligned_cols=522 Identities=13% Similarity=0.155 Sum_probs=296.4
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCC---------------eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEE
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNA---------------SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~---------------~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~i 86 (706)
.+++|.....++|+|+.+ .+.+..+.+. ..-++|+||.+.|.-+.|..+.+.|-+...+|.|.+
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 379999999999999876 5666655432 123678999999999999999999999999999999
Q ss_pred EECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 87 WDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 87 wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
|-+-.|.-...+. ..+..|.+++|+.||..++..-.||.|.+=.++..+.-. .++ ......+.|++|.+. ++.
T Consensus 98 WmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~--~Lf 173 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQ--ALF 173 (1189)
T ss_pred EeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHH--HHh
Confidence 9998776443332 245788999999999999999999999998887654321 122 223457889998776 777
Q ss_pred EecCCeEEEEECCCCe-------eEE----EeecccceEEEEEEe--------cCCCEEEEEeCCCEEEEEeCCCCccee
Q 005254 164 GSDDATVRVWDLLAKK-------CVA----TLDKHFSRVTSMAIT--------SDGSTLISAGRDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~~w~~~~~~~~~ 224 (706)
+-.+|.+.++|.+..- +.- .+......+..+.|. |+...|+++...|.+.+-.-.+.....
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 7788999999975321 111 111112235556663 477889999999998887665555444
Q ss_pred eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC---------CeEEEEECCCCeEEeeccCccc
Q 005254 225 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER---------GIVRMWNADSACLYEQKSSDVT 295 (706)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~ 295 (706)
.+.....+....+.++|.. ++.+|.+ +.|.++..-..
T Consensus 254 v~dtgm~~vgakWnh~G~v-----------------------LAvcG~~~da~~~~d~n~v~Fysp~G~----------- 299 (1189)
T KOG2041|consen 254 VVDTGMKIVGAKWNHNGAV-----------------------LAVCGNDSDADEPTDSNKVHFYSPYGH----------- 299 (1189)
T ss_pred EEecccEeecceecCCCcE-----------------------EEEccCcccccCccccceEEEeccchh-----------
Confidence 4555566777778888763 2222221 12222221111
Q ss_pred cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc-------------------ccceeeEEeeE---ecccC
Q 005254 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP-------------------EKKMELILSKR---LVGYN 353 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~~~ 353 (706)
..-....+...++++++-..+-.++ ...++.+++-++.+.- ........... ....-
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA-~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V 378 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIA-IAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTV 378 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEE-EEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhh
Confidence 1111223344455555544443332 3334444443333211 00000000000 00000
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeC-CCceeeEeeeC-------CcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDL-SSMSCSYVLAG-------HSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~-~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
....++++.. +.-.++.-..++.+.-++. ++......+.- -....+.+.-+|..-++..++.++. ..+.+
T Consensus 379 ~~~~~~a~~~-ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~-e~~~i 456 (1189)
T KOG2041|consen 379 THFENMAFYR-EHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE-ERYFI 456 (1189)
T ss_pred cceeehheec-ccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc-ccEEE
Confidence 1111222221 1122333333333333311 11111111110 0011111211122222332444443 35666
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
|.....+....+.+-..... -.|+-| ...+|+.|+.+.- ......+...+|.+++.+
T Consensus 457 Why~~pK~~s~l~~~k~rke-gr~h~D---dtp~ga~d~~l~y-----------------s~kt~~G~~DpICAl~~s-- 513 (1189)
T KOG2041|consen 457 WHYVLPKFNSVLAGVKIRKE-GRFHGD---DTPEGAQDRTLEY-----------------STKTLLGSKDPICALCIS-- 513 (1189)
T ss_pred EEEeccchhhhhhhhhhccc-ccccCC---CCccchhhceeec-----------------cceeeccCCCcceeeeec--
Confidence 76554433222211000000 002211 1222333332211 223455667788888876
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC---CCceEE-EEeecccCE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLK-TFEGHTSSV 581 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~~~~-~~~~~~~~i 581 (706)
.++|.++-..|.|.-|.+.+........ -+..+..++.+-+...+|.-.--|.+.+.|+. ++..+. .+......|
T Consensus 514 dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDV 592 (1189)
T KOG2041|consen 514 DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDV 592 (1189)
T ss_pred ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhh
Confidence 5689999999999999998876665544 45678899998888889998888999998886 344444 334455679
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..+.|..|+..|+.--+...++|++-.+
T Consensus 593 Wd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 593 WDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhhhhccCCchHHhhhhhceEEEecCcC
Confidence 9999999888777766667778876543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-10 Score=106.61 Aligned_cols=291 Identities=14% Similarity=0.149 Sum_probs=178.6
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEec----CCcEEEEeCCCc--ee--eEeeeCCcc
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATN----IEQVQVYDLSSM--SC--SYVLAGHSE 397 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----~~~i~~~d~~~~--~~--~~~~~~~~~ 397 (706)
+.|+.|.+...... +..... ........-+++.+ ++++|.+... .+.|..|++... .. +........
T Consensus 13 ~gI~~~~~d~~~g~---l~~~~~-~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGT---LTLVQT-VAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTE---EEEEEE-EEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCCC---ceEeee-ecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 57777777433321 211122 22334445566666 5555555554 578888887754 32 223332233
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-ceEEEE---Ee----------CCCcCeEEEEEecCCCeEEEEecCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGV---GT----------GHMGAVGAVAFSKKLQNFLVSGSSD 463 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~l~~~~~d 463 (706)
....+. ..++++.++++...+|.+.++++.. +..... .. .......++.++|+++.++++.-..
T Consensus 88 ~p~~i~--~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIA--VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEE--ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CcEEEE--EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 333444 7899999777777899999999986 433322 11 2345678899999999666666667
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC--Ccc--EEEEEeec---
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DLV--SVVTFRGH--- 535 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~--- 535 (706)
..|.+|+++....... . ..............++|+|+++++++.. .++.|.++++. ++. .+..+...
T Consensus 166 D~v~~~~~~~~~~~l~----~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLT----P-VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEE----E-EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEE----E-eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 7899999976532110 0 1222334566789999999999887665 46779999987 332 22222211
Q ss_pred ---CCcEEEEEEccCCCEEEEec-CCCcEEEEEcC--CCce--EEEEeecccCEEEEEEEeCCCEEEEEeC-CCCEEEEE
Q 005254 536 ---KRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS--DGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWT 606 (706)
Q Consensus 536 ---~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd 606 (706)
......++++|||++|+++. .++.|.+|++. ++++ +..+.......+.+.++|+|++|+++.. ++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578899999999987765 46789999993 2333 3444434455899999999999988874 56899886
Q ss_pred C--CCCeEEEEec-cCCCcEEEEEE
Q 005254 607 V--RTGECIATYD-KHEDKIWALAV 628 (706)
Q Consensus 607 ~--~~~~~~~~~~-~~~~~v~~~~~ 628 (706)
+ .+|.+...-. ..-....||.|
T Consensus 321 ~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 321 IDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EeCCCCcEEEecccccCCCCEEEeC
Confidence 6 5777544432 22344556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-10 Score=107.83 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=136.5
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEe---ee----------CCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYV---LA----------GHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~---~~----------~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.+++.++...++++...+|.+.++++.. +..... +. .......++. +.|+++.++++.-....|
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~--~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV--FSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE--E-TTSSEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE--ECCCCCEEEEEecCCCEE
Confidence 3444443333444444678888888876 332221 11 1122344555 889999877766666789
Q ss_pred EEEeCCCce--EE--EEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee------
Q 005254 424 RLWDSESRC--CV--GVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------ 492 (706)
Q Consensus 424 ~i~d~~~~~--~~--~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~------ 492 (706)
.+|++.... .. ..+ .......+.++|+|+++.+.++...++.|.++++..... ..........
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g------~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG------SLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT------EEEEEEEEESCETTSC
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC------ceeEEEEeeecccccc
Confidence 999987654 21 122 245567889999999997777888899999999983321 1111111111
Q ss_pred cCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC--Cc--cEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEc-
Q 005254 493 HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP--DL--VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI- 565 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~--~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~- 565 (706)
.......++++|||++|+++. ..+.|.+|++. ++ +.+..+.........++++|+|++|+++. .++.|.+|++
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 112578899999999988766 45679999983 23 33444444455589999999999998876 5678999976
Q ss_pred -CCCceEEEEe-ecccCEEEEEE
Q 005254 566 -SDGSCLKTFE-GHTSSVLRASF 586 (706)
Q Consensus 566 -~~~~~~~~~~-~~~~~i~~~~~ 586 (706)
.+|.+...-. ..-....|+.|
T Consensus 323 ~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 323 PDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCCcEEEecccccCCCCEEEeC
Confidence 4665544332 23345566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=124.48 Aligned_cols=212 Identities=11% Similarity=0.171 Sum_probs=164.2
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
...+++....||.+++|+..+++....+.+. +..+..++-..|.+..... +.......
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~~s~t~~~~~w~L~~~~s----~~k~~~~~- 61 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------ASLSGTCTYTKWGLSADYS----PMKWLSLE- 61 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc-----------------hhccCcceeEEEEEEeccc----hHHHHhHH-
Confidence 3345888999999999999998877665421 1222233344454432210 00100000
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
.....+.|-..++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 62 --------~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 62 --------KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred --------HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 011223456688889999999999999999988877 4999999999999999999999999999999999
Q ss_pred CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCC-----CCEEEE-EeCC
Q 005254 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKK-----TEMFAT-GGSD 641 (706)
Q Consensus 568 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~-~~~d 641 (706)
.+.++.+......+.+++.+|||..|++++ +.|++||+.+++.+..+.+|.++|.+++|.-+ |.++++ ...+
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 999999999889999999999999999886 67999999999999999999999999999877 666664 4556
Q ss_pred CcEEEEECCchh
Q 005254 642 ALVNLWHDSTAA 653 (706)
Q Consensus 642 g~i~vw~~~~~~ 653 (706)
.-+.+|-+....
T Consensus 212 r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 212 RGITVWVVEKED 223 (541)
T ss_pred cceeEEEEEccc
Confidence 778999887643
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-13 Score=114.94 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=178.1
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-----EEEEEeCCC------------cCeEEEEEecCCC-eEE
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSKKLQ-NFL 457 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~-~~l 457 (706)
...+.++. +...|.. |++|..+|+|.++.-.... ....++.|. ..|..+.|.+++. ..+
T Consensus 25 adiis~ve--f~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVE--FDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEE--eecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 34566777 8888888 9999999999999654322 222333332 3577788877654 356
Q ss_pred EEecCCCeEEEEEecCCCCCCC--------ccc---c---------------cceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAE--------QPM---N---------------LKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~--------~~~---~---------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
+..+.|.+|++|.+........ .+. . ........+|...|.++.++.|+..+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 7778899999999875432210 000 0 0011122457778999999999999988
Q ss_pred eeCCCcEEEEeCCCcc---EEEEEeecC-----CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceE----EEEe---
Q 005254 512 GSQDRTACVWRLPDLV---SVVTFRGHK-----RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCL----KTFE--- 575 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~----~~~~--- 575 (706)
+. |-.|.+|++.--. .+..++++. .-|++..|+|. .+.++-.+..|+|++-|++...+- +.+.
T Consensus 182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 75 6789999986432 233344443 34889999995 567888889999999999743221 1111
Q ss_pred ---------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC-CCCeEEEEeccCC------------Cc---EEEEEEcC
Q 005254 576 ---------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV-RTGECIATYDKHE------------DK---IWALAVGK 630 (706)
Q Consensus 576 ---------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~------------~~---v~~~~~s~ 630 (706)
.--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|. +. -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11246888999999999998644 68999999 5667777776553 22 24688999
Q ss_pred CCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 631 KTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 631 ~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
++.+++||+....++++++..+..+..
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred CcceEecccccceEEEecCCCCcceee
Confidence 999999999999999999877765443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-11 Score=114.02 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=115.7
Q ss_pred CCEEEEee-CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEE-E
Q 005254 31 GSFIACAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG-M 108 (706)
Q Consensus 31 g~~l~~~~-~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~-~ 108 (706)
+..+++++ ++.++-+|..+|+.+-..+.........+. ++..++.++.++.+..+|.++|+.+...... ..+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 34455554 458999999999987655443322222222 4677888888999999999999998876643 22221 1
Q ss_pred EECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEE-----EEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 109 ACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS-----SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 109 ~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
.. .+..++.++.++.|..||.++|+.+..+........ ..... + + .++.+..+|.+..+|.++|+.+..
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEEEEccCCCEeee
Confidence 12 345677777899999999999998877654332211 11111 2 2 377788889999999999987654
Q ss_pred eecccc----eE---EEEEEec--CCCEEEEEeCCCEEEEEeCCCCccee
Q 005254 184 LDKHFS----RV---TSMAITS--DGSTLISAGRDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 184 ~~~~~~----~v---~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~ 224 (706)
...... .+ ..+.-+| .+..+++++.+|.++.||.++++.+.
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 321100 00 0000011 24467777778888888877665443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6e-12 Score=122.21 Aligned_cols=199 Identities=20% Similarity=0.121 Sum_probs=129.2
Q ss_pred ceEEcCCCCE--EEEeeC----CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-----cCeEEEEECCCC
Q 005254 24 PLVVSSDGSF--IACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDLSTL 92 (706)
Q Consensus 24 ~~~~s~dg~~--l~~~~~----~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-----d~~i~iwd~~~~ 92 (706)
.-+|||||+. +++.+. ..|++.++.+++... +....+.....+|||||+.||..+. +-.+.+|++.++
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 4589999986 333332 269999998887543 3334445567899999999886543 223455777653
Q ss_pred ---eEEEEeeccCCCeEEEEECCCCCEEEEec-CCCc--EEEEECCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 93 ---KCLRSWKGHDGPAIGMACHPSGGLLATAG-ADRK--VLVWDVDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 93 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~--i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+.......+.......+|||||+.|+..+ .++. |.++++.. +.....+..+...+....|+|||+. ++..+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~--Laf~~ 345 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK--IAFCS 345 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE--EEEEE
Confidence 33333333334456789999999888765 3554 44445542 3334445555567788999999886 44433
Q ss_pred c---CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC---CCEEEEEeCCCCcceeee
Q 005254 166 D---DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 166 ~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~ 226 (706)
. ...|.+||+.+++... +......+....|+|||+.|+.... ...|.++++..++.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 2 2479999998887644 3333345678899999998876543 357888998877654433
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=112.59 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=129.9
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-----------cCeEEEEECCCC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-----------SREIRVWDLSTL 92 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-----------d~~i~iwd~~~~ 92 (706)
-+.|||-|.||++-....|.+|--++-..++.+. |. .|.-+.|||+.+||++-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 5889999999999999999999876666666664 53 5789999999999998642 257999999999
Q ss_pred eEEEEeeccCC--Ce-EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---
Q 005254 93 KCLRSWKGHDG--PA-IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--- 166 (706)
Q Consensus 93 ~~~~~~~~~~~--~v-~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--- 166 (706)
.+.+.|..... .+ .-+.||.|++|+|-... .+|.||+..+-.++..-.-.-..|....|+|.+.. ||--..
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l--lAYwtpe~~ 369 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL--LAYWTPETN 369 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcce--EEEEccccc
Confidence 99998876322 22 34689999999998776 55999998775444333334567889999998653 332211
Q ss_pred --CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEE
Q 005254 167 --DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 167 --dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 206 (706)
-..+.+-.+.+++.+++-.-+.-.=..|.|-.+|.+|+.-
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEE
Confidence 2346666777777777666555445567777888887754
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=109.94 Aligned_cols=343 Identities=19% Similarity=0.236 Sum_probs=216.1
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC-CCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
..+++.++||...++....-|-..-+.+.+.|.+++||-- ++++--..+. ....+++++.+.++... |+.|-..|+
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~--L~vg~~ngt 91 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR--LYVGQDNGT 91 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE--EEEEEecce
Confidence 3456778899999999999998888999999999999964 3444322222 24567889999887665 999999999
Q ss_pred EEEEECC----CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 170 VRVWDLL----AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 170 i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+.-+.+. .....+....|...+..+-|+.....+++.+.|..+.---.+.+..+........
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-------------- 157 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-------------- 157 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--------------
Confidence 9988653 4455666678999999999998888999999887554333332221111100000
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
..
T Consensus 158 -------------------------~t----------------------------------------------------- 159 (404)
T KOG1409|consen 158 -------------------------AS----------------------------------------------------- 159 (404)
T ss_pred -------------------------CC-----------------------------------------------------
Confidence 00
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeC--CCceeeEeeeCCcceEEEee
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL--SSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~i~~~~ 403 (706)
++.+ +-.+..++...|.+....+ .....+..+.+|.+.+.++.
T Consensus 160 --------------------------------~~~~---d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~ 204 (404)
T KOG1409|consen 160 --------------------------------ALQF---DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK 204 (404)
T ss_pred --------------------------------CCce---eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence 0000 0002222333343333332 33455668889999999997
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.+.... +++|..|..+.+||+..++-+ ..+.+|...|..+...+--+ .+++++.||.|.+|+.+....+..+..
T Consensus 205 --Wd~~~~~-LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~etpewl 280 (404)
T KOG1409|consen 205 --WDPGQRL-LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVETPEWL 280 (404)
T ss_pred --EcCCCcE-EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeecCcccc
Confidence 6666665 999999999999999866544 45778999999988877655 799999999999999876532221111
Q ss_pred ccceeE--------------------EEee---cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC-------CccEEEEE
Q 005254 483 NLKAKA--------------------VVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLP-------DLVSVVTF 532 (706)
Q Consensus 483 ~~~~~~--------------------~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~ 532 (706)
...... .... +-+...+..-+.+.....+-+..-.+++-|.- +..++..+
T Consensus 281 ~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p 360 (404)
T KOG1409|consen 281 DSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP 360 (404)
T ss_pred ccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccc
Confidence 000000 0000 00111111111121122222222334443321 12334444
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
..-...|+++.+..+-.+|++++.|..|+|||+++
T Consensus 361 hei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 361 HEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 44456799999998889999999999999999853
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=114.85 Aligned_cols=188 Identities=21% Similarity=0.291 Sum_probs=153.9
Q ss_pred cCCCCEEEEeeCC-eEEEEEccCCeEEEeecCC---CccEEEEEEc------c--------------CCCEEEEEeccCe
Q 005254 28 SSDGSFIACACGE-SINIVDLSNASIKSTIEGG---SDTITALALS------P--------------DDKLLFSSGHSRE 83 (706)
Q Consensus 28 s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~---~~~i~~l~~s------~--------------~~~~l~s~~~d~~ 83 (706)
.|-+.++|...++ .++|||..++++...+..- ++.-++..|. | |-..+|-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3556777877766 8999999999877666432 2333444442 2 3346677788999
Q ss_pred EEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEE
Q 005254 84 IRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 161 (706)
|.++++..|+.-..+. .|.+.|.++.++.+-..|.+++.|..+..|+...++.+..+.+....+.+++.+||+.. +
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~--l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKI--L 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCE--E
Confidence 9999999999988886 49999999999999999999999999999999999999999999999999999999775 6
Q ss_pred EEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecC-----CCEEEEE-eCCCEEEEEeCCC
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSD-----GSTLISA-GRDKVVNLWDLRD 219 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~~w~~~~ 219 (706)
++++ ++|++||+++++.+..+.+|.++|.++.|..+ |.+++++ ..+..+.+|-.+.
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6554 68999999999999999999999999999877 6666654 4456677887654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-11 Score=118.89 Aligned_cols=221 Identities=11% Similarity=0.026 Sum_probs=138.7
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe--EEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN--FLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
..|.+.|...+.... +.........-+|+|||+. ++++...+| .|.+.++..+. ...+......
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-----------~~~lt~~~g~ 232 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-----------GKKILALQGN 232 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-----------ceEeecCCCC
Confidence 357777776554433 3444556677899999875 333454444 46666666542 1222223344
Q ss_pred eEEEEEcCCCCEEEEeeC-CC----cEEEEeCCCc---cEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEE--Ec
Q 005254 497 INSLAVAPNDSLVCTGSQ-DR----TACVWRLPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIW--SI 565 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~-dg----~i~i~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw--d~ 565 (706)
....+|||||+.|+..+. +| .+.+|++..+ +.......+.......+|+|||+.|+..+ .+|...+| ++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 556899999998887553 23 3444676642 33333333333446789999999877665 46655555 44
Q ss_pred CC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-
Q 005254 566 SD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGS- 640 (706)
Q Consensus 566 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 640 (706)
.. +.....+..+...+....|||||++|+..+.+ ..|.+||+.+++..... .....+....|+|||++|+..+.
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC
Confidence 32 23344444444566788999999999876553 36999999988765433 22345678999999998875433
Q ss_pred --CCcEEEEECCchhH
Q 005254 641 --DALVNLWHDSTAAE 654 (706)
Q Consensus 641 --dg~i~vw~~~~~~~ 654 (706)
...|.+|++..++.
T Consensus 392 ~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 392 SNESELYLISLITKKT 407 (428)
T ss_pred CCCceEEEEECCCCCE
Confidence 35688888876653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-10 Score=111.19 Aligned_cols=306 Identities=16% Similarity=0.091 Sum_probs=180.1
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
+..+++++.++.|.-+|..+|+.+.............+. ++..+++++.++.+..+|.++|+.+...... ..+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 667888888999999999999998877654332222322 4677888888999999999999988765532 2222211
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEE-----EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT-----SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
.. .++. ++.++.+|.|..||.++|+.+.........+. +.... + ..++.+..+|.+..+|.++++.+...
T Consensus 142 ~v-~~~~--v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LV-ANGL--VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EE-ECCE--EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 11 1233 67778899999999999998876644322111 11121 2 46778888899999998887654432
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
..... .+... .-++.+.
T Consensus 217 ~~~~~--------~g~~~------------------------------~~~~~~~------------------------- 233 (377)
T TIGR03300 217 RVALP--------KGRTE------------------------------LERLVDV------------------------- 233 (377)
T ss_pred ccccC--------CCCCc------------------------------hhhhhcc-------------------------
Confidence 21100 00000 0000000
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
...++ + .+..+.+++.+|.++.+|..++
T Consensus 234 ---------------------------------------------~~~p~----~---~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 234 ---------------------------------------------DGDPV----V---DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred ---------------------------------------------CCccE----E---ECCEEEEEEcCCEEEEEECCCC
Confidence 00000 0 1234555555677777777777
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCe
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
+......... ... ....++. ++.++.+|.+..+|..+++.+...... .....+.... +. .+++++.+|.
T Consensus 262 ~~~W~~~~~~--~~~----p~~~~~~-vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g~-~l~~~~~~G~ 331 (377)
T TIGR03300 262 RVLWKRDASS--YQG----PAVDDNR-LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVV--GG-YLVVGDFEGY 331 (377)
T ss_pred cEEEeeccCC--ccC----ceEeCCE-EEEECCCCeEEEEECCCCcEEEccccccCCccccCEEE--CC-EEEEEeCCCE
Confidence 6554443111 111 1223455 677788999999999999877655322 2222222332 23 6888999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
+.++|..+++ .......+...+..--...++ .|++++.||.|+.|
T Consensus 332 l~~~d~~tG~----------~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 332 LHWLSREDGS----------FVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEECCCCC----------EEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 9999987653 333333333222222112233 57788899998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-11 Score=118.70 Aligned_cols=235 Identities=14% Similarity=0.078 Sum_probs=148.2
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.++|....... .+......+.... ++|+++.++++...++ .|++||+.+++.... ....+.....+|+|+|+
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCC
Confidence 5666676554332 3334455555555 8899998555554444 588889988765433 22233445789999999
Q ss_pred eEEEEecCCCe--EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEE
Q 005254 455 NFLVSGSSDHT--IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (706)
Q Consensus 455 ~~l~~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 529 (706)
.++++.+.++. |.++|+..+. ...+..+.......+|+|||+.++..+. ++ .|+++|+.+++..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 77667777776 5556665432 1222233445577899999998876654 33 4677788777644
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-C--CEE
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-G--LVK 603 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~ 603 (706)
... .........+|+|||++|+..+.+ + .|.++|+.+++... +... .......|+|||++|+..+.+ | .++
T Consensus 344 ~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 344 RLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA 420 (448)
T ss_pred EEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence 322 122223457899999998776553 3 46667887776532 3222 122245899999998776654 3 377
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
+++. +|+....+..+.+.+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCCCcCCCccCC
Confidence 7786 6766677766667777888887
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-11 Score=118.51 Aligned_cols=236 Identities=13% Similarity=0.046 Sum_probs=151.0
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.++|...... ..+..+...+.... ++|+++.++++...+ ..|.+||+.+++.... ....+.....+|+|+|+
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCC
Confidence 477777765543 34445555666666 889999855555443 3688999988865443 33334556789999998
Q ss_pred eEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEE
Q 005254 455 NFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSV 529 (706)
Q Consensus 455 ~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 529 (706)
.++++...+| .|.++|+..+. ...+..+........|+|||+.++..+. +| .|+++++.+++..
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 6666666665 57777776542 1222233344567789999998876654 33 5777888777643
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEecCC-C--cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEE
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITASGD-K--TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVK 603 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~ 603 (706)
.... .........|+|+|+.|+....+ + .|.+||+.+++... +. +........|+|||++++..+.+ ..+.
T Consensus 325 ~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 325 RVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred Eeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 3221 22233457899999999877643 2 58889998876533 22 22222356899999998876654 3477
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
++++. |.....+..+.+.+...+|+|-
T Consensus 402 ~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 402 LVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEECC-CCceEECcCCCCCcCCCccCCC
Confidence 77774 4444455555566777777763
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-09 Score=98.61 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=166.6
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee---------CCCcEEEEeCCCceEEEEEeCCC-----
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRCCVGVGTGHM----- 441 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~----- 441 (706)
+.+.+.|..+.+.+..+.....+-. + .+++++.+.++.+ .+..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~---~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V---VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e---ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 8999999999998888776554443 2 6788998666666 78899999999999998876432
Q ss_pred --cCeEEEEEecCCCeEEEEecC-CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcE
Q 005254 442 --GAVGAVAFSKKLQNFLVSGSS-DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (706)
Q Consensus 442 --~~v~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 518 (706)
.....++++|+|+.++++--. +..|.+.|+...+. .....- .....-...+++..++ -+.||..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv----------v~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~ 169 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF----------VRMMDV-PDCYHIFPTANDTFFM--HCRDGSL 169 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE----------EEEEeC-CCCcEEEEecCCccEE--EeecCce
Confidence 233478999999954444434 89999999987642 111111 1111111111111111 1233433
Q ss_pred EEEeCCC-ccEE-E---EEeec-----CCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC-----ceEEEEee------
Q 005254 519 CVWRLPD-LVSV-V---TFRGH-----KRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG-----SCLKTFEG------ 576 (706)
Q Consensus 519 ~i~d~~~-~~~~-~---~~~~~-----~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~------ 576 (706)
....+.+ ++.. . .+... ..+ .|++ +++++....+ |+|.+.|+... +....+..
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 3322221 1111 1 11110 112 4455 8888877766 99999996443 22222211
Q ss_pred -cccCEEEEEEEeCCCEEEEEe----------CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEe-CCCc
Q 005254 577 -HTSSVLRASFLTRGAQIVSCG----------ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE-MFATGG-SDAL 643 (706)
Q Consensus 577 -~~~~i~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~ 643 (706)
..+.+.-+++++++++|++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 223344599999999988743 225799999999999998874 45789999999999 777665 5788
Q ss_pred EEEEECCchhHHHH
Q 005254 644 VNLWHDSTAAEREE 657 (706)
Q Consensus 644 i~vw~~~~~~~~~~ 657 (706)
|.+.|..+++....
T Consensus 324 VsViD~~t~k~i~~ 337 (352)
T TIGR02658 324 LYIFDAETGKELSS 337 (352)
T ss_pred EEEEECcCCeEEee
Confidence 99999988876543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-11 Score=118.83 Aligned_cols=234 Identities=17% Similarity=0.109 Sum_probs=151.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
..|.++|...... ..+..+...+.... ++|+++.++++...+ ..|++||+.+++.... ..+.+.+.+++|+|++
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~--~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPA--WSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDG 245 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceeccc--CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCC
Confidence 3577777754433 34444555566666 889999844443333 4799999998765443 3345566779999999
Q ss_pred CeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCccE
Q 005254 454 QNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLVS 528 (706)
Q Consensus 454 ~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~ 528 (706)
+.++++.+.++ .|++|++.... ...+..+........|+|||+.|+..+.. + .|+++|+.+++.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCC-----------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 86666666555 47777776542 11222233334567899999988766543 3 588888877654
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LV 602 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i 602 (706)
. .+..+...+....|+|++++++.++.++ .|.+||+.++... .+... .......|+|||++|+..+.++ .+
T Consensus 315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 3 3444556677889999999999888776 7999998876443 33222 2334568999999998877764 35
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
++.+. +++....+..+.+.+..+.|
T Consensus 392 ~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 392 GLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEC-CCceeeECCCCCCCcCCCCC
Confidence 55554 45555555544444544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-11 Score=117.28 Aligned_cols=175 Identities=23% Similarity=0.247 Sum_probs=126.8
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
.|.++|...... +.+..+...+...+|||||++||.+... ..|++||+.+++... +..+.+.+.+++|+||++.|
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 588999865544 4455566788999999999999987543 579999999886543 33355667789999999988
Q ss_pred EEe-cCC--CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CC--eEEEEECCCCeeEEEeecccceE
Q 005254 118 ATA-GAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DA--TVRVWDLLAKKCVATLDKHFSRV 191 (706)
Q Consensus 118 ~~~-~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v 191 (706)
+.. +.+ ..|++||+.++... .+..+........|+|+++. ++..+. ++ .|.++|+.+++.. .+..+....
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 754 333 46999999887643 34445555567799999876 544433 33 6888888776643 344455667
Q ss_pred EEEEEecCCCEEEEEeCCC---EEEEEeCCCCc
Q 005254 192 TSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
....|+|+|++++.++.++ .|.+||+.++.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 7889999999999888776 89999988754
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-11 Score=116.11 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=115.7
Q ss_pred eEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCeEEEE
Q 005254 25 LVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~ 97 (706)
-+|+....++....++ .|.++|...... +.+..+...+.+.+|||||+.|+..+. ...|.+||+.+++...
T Consensus 179 g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~- 256 (448)
T PRK04792 179 GAFLTRIAYVVVNDKDKYPYQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK- 256 (448)
T ss_pred ccccCEEEEEEeeCCCCCceEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence 3444444444433332 578888765544 445556778999999999999987643 2368999998876533
Q ss_pred eeccCCCeEEEEECCCCCEEEEe-cCCC--cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC--eEEE
Q 005254 98 WKGHDGPAIGMACHPSGGLLATA-GADR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA--TVRV 172 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~v 172 (706)
+....+.....+|+|||+.|+.. +.++ .|+++|+++++.. .+..+.......+|+||++. ++++...++ .|.+
T Consensus 257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 22223344578999999988764 4455 4888898887644 34445566778899999876 233333333 5666
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+|+.+++... +..+.......+|+|||++|+..+.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 7877776443 2222223345689999998877654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-11 Score=118.53 Aligned_cols=213 Identities=12% Similarity=0.011 Sum_probs=138.2
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
.|.++|...+.. ..+..+...+....|+|+|+.++++...+ ..|.+|++..+. ...+.........
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----------~~~l~~~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----------REQITNFEGLNGA 247 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----------EEEccCCCCCcCC
Confidence 477777765543 34445667889999999998554544333 368888887652 1112222334456
Q ss_pred EEEcCCCCEEEE-eeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEEE
Q 005254 500 LAVAPNDSLVCT-GSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKT 573 (706)
Q Consensus 500 ~~~s~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~ 573 (706)
..|+|||+.|+. .+.+| .|+++|+.+++.. .+..+........|+|||+.|+..+. +| .|+++|+.+++....
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 899999998874 44444 5888899887654 34445555677899999998776554 33 577888877764332
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCC-C--CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD-A--LVNLW 647 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~vw 647 (706)
. ..........|+|||++|+..+.+ + .|.+||+.+++....... .......|+|||++++..+.+ | .+.++
T Consensus 327 t-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 327 T-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred e-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 2 122233457899999999877654 3 588899988865332222 122356899999988866543 3 45666
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
++.
T Consensus 404 ~~~ 406 (430)
T PRK00178 404 SIN 406 (430)
T ss_pred ECC
Confidence 664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.4e-09 Score=92.21 Aligned_cols=269 Identities=9% Similarity=0.096 Sum_probs=174.6
Q ss_pred CCcEEEEeCCCceeeE---eeeCCcceEEEeeeeeecCCCEEEEEee-C--CCcEEEEeCCC--ceEEE--EEeCCCcCe
Q 005254 375 IEQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKILIVTGS-K--DNSVRLWDSES--RCCVG--VGTGHMGAV 444 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~l~~~~-~--dg~i~i~d~~~--~~~~~--~~~~~~~~v 444 (706)
+..|++|++.+..-.. .+-...+.++-++ +.++.+. |.++. . +|.|..|.+.. |+... .......+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~-LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRH-LYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCE-EEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 4779999887432211 2223445556666 7788877 44443 3 57777776654 44332 233344455
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc----------ceEEEEEcCCCCEEEEeeC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK----------DINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~i~~~~~s~~~~~l~~~~~ 514 (706)
+.++++++++.++.+.-..|.|.++.++...... .......|.. .+....+.|++++|++.+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 8899999998544455567899999987642111 1111111222 2778899999999998763
Q ss_pred -CCcEEEEeCCCccEEEEEe---ecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCC-ceEEEEeec---------cc
Q 005254 515 -DRTACVWRLPDLVSVVTFR---GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDG-SCLKTFEGH---------TS 579 (706)
Q Consensus 515 -dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~---------~~ 579 (706)
--.|.+|++..+.+...-. ........|.|+|++++.....+ +++|.+|..+.. ..+..++.+ ..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 2359999999776543322 24556789999999999877665 889999998774 233333321 24
Q ss_pred CEEEEEEEeCCCEEEEEeCC-CCEEEEECCC--CeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCchh
Q 005254 580 SVLRASFLTRGAQIVSCGAD-GLVKLWTVRT--GEC--IATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDSTAA 653 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~ 653 (706)
....+.+++||++|.++... ..|.+|.+.. +++ +.....+...-....|++++++|++++.+ ..|.+|..+...
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 56788999999999876542 3677777653 332 22233444446789999999999988764 568888876543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-10 Score=93.90 Aligned_cols=273 Identities=19% Similarity=0.239 Sum_probs=174.1
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEe--CCCCc-EEEEEecCCcEEEEeCCCceeeEeeeCCcc---
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL--GEEEQ-YLAVATNIEQVQVYDLSSMSCSYVLAGHSE--- 397 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--- 397 (706)
..|.+.+|++........... .......+..+.|. +.++. .++.+...|.|.+|..........+.+-..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~----q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTL----QCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred eccceEEEeecccccCcccee----eeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh
Confidence 456777777765543221111 11112233334332 23333 567777789999998776555444443221
Q ss_pred eEE-EeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 398 IVL-CLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 398 ~i~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
.+. ++..-+.+.+.. ++++..+|.+.+-+........ ..+.|.-......|+...++++.+|+.|+.+..||++..
T Consensus 120 ~~~~~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred hheeeeEEEeeccCce-EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 122 232226666666 8888999999866655544433 678899999999999888889999999999999999832
Q ss_pred CCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccC--CCE
Q 005254 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPV--DQV 550 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~--~~~ 550 (706)
.. ........|...|.++.-+| .+.++++|+.|-.|++||.++. +++..- .-.+.|..+.++|. +..
T Consensus 199 ~~--------~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 199 KT--------FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred cc--------eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHH
Confidence 10 01222456778899998876 5789999999999999999854 444332 24588999999994 345
Q ss_pred EEEecCCCcEEEEEcCCCc-----eEEEEeecccCEEEEEEEeCCCEEEEEe-CCCCEE-EEECCCCe
Q 005254 551 VITASGDKTIKIWSISDGS-----CLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVK-LWTVRTGE 611 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~~ 611 (706)
|+++-..| .+|-+.+.+. .....+.|.+-+..-.|.....+|++++ .|+.++ +|-..+++
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 66666666 7887776542 2334445666555556644445677754 455544 66544443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=115.88 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=158.9
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC--------------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG--------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
..+.++.++++-..++.|+++|..... +..+.. .-.....+++++++..+.++-..++.|+.+|+
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~ 653 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF 653 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence 555566657777788899999976543 333221 11245789999887645555566788999987
Q ss_pred cCCCCCCCcccccceeEEEee-----------------cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEe
Q 005254 472 DGLSDDAEQPMNLKAKAVVAA-----------------HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 533 (706)
.+.. ...+.+ .-.....++++| ++.++++.+.++.|++||..++... .+.
T Consensus 654 ~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~ 721 (1057)
T PLN02919 654 VNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS 721 (1057)
T ss_pred CCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence 6541 111100 012346799999 5666677777889999998776432 221
Q ss_pred e---------------cCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEee---------------------
Q 005254 534 G---------------HKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEG--------------------- 576 (706)
Q Consensus 534 ~---------------~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~--------------------- 576 (706)
+ .-.....++++|+++.| ++-+.++.|++||+.++.......+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 11235679999999855 4555678999999987653211100
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-------------cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-------------KHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
.-.....++++++|+.+++-..++.|++||..++....... +.......++++++|+.+++-+.++.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 01124578999999988888889999999998877653321 11235678999999998888889999
Q ss_pred EEEEECCchhH
Q 005254 644 VNLWHDSTAAE 654 (706)
Q Consensus 644 i~vw~~~~~~~ 654 (706)
|++|++.++..
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-10 Score=93.73 Aligned_cols=267 Identities=16% Similarity=0.171 Sum_probs=176.2
Q ss_pred CcEEEEeCCCceeeE---eeeCCcceEEEeeeeeecCCCE-EEEEeeCCCcEEEEeCCCceEEEEEeCCCc------CeE
Q 005254 376 EQVQVYDLSSMSCSY---VLAGHSEIVLCLDTCALSSGKI-LIVTGSKDNSVRLWDSESRCCVGVGTGHMG------AVG 445 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~ 445 (706)
|.+.+|++...+... ........+..+.|+.-+.+.. .++-+...|.|.++..........+.+-.. ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 677888877654432 1122333444455444443333 567778889999997665544444433211 234
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~ 524 (706)
++.|++.+. -++++..+|.+.+-+.... ..+.......|..+.....|+. +.+++.+|+.|+.+..||++
T Consensus 126 slD~~~~~~-~i~vs~s~G~~~~v~~t~~--------~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 126 SLDISTSGT-KIFVSDSRGSISGVYETEM--------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred EEEeeccCc-eEEEEcCCCcEEEEeccee--------eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 567888776 5888888888885544322 2234445677888888888876 34688999999999999998
Q ss_pred -CccEEEE-EeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCC--CEEEEEeC
Q 005254 525 -DLVSVVT-FRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRG--AQIVSCGA 598 (706)
Q Consensus 525 -~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~ 598 (706)
.++.+.. .+-|...|.++.-+| .+.++++|+.|-.|++||.++ ++++..-. -.+.|..+.++|.- +.|+++-.
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence 3334433 456889999999887 467999999999999999984 56665443 34789999998853 34566666
Q ss_pred CCCEEEEECCCC--e---EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEE-EEECCchh
Q 005254 599 DGLVKLWTVRTG--E---CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVN-LWHDSTAA 653 (706)
Q Consensus 599 dg~i~iwd~~~~--~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-vw~~~~~~ 653 (706)
+| .+|-+...+ + .....+.|.+-+..-.|......|+|++ .|..++ +|-.-++.
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55 666666544 2 3344456777666667755556788865 477755 88665543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-09 Score=90.13 Aligned_cols=204 Identities=21% Similarity=0.270 Sum_probs=138.5
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCe--EEEeec---CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNAS--IKSTIE---GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~--~~~~l~---~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
++.++||++||+..+..|.|...++.- .+...+ ...-+=+-++||||+.+||.+...|+|+++|+.... +..+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC
Confidence 788999999999999999999876541 222222 222355889999999999999999999999997643 33333
Q ss_pred c-------cCCCeEEEEECCCC---C---EEEEecCCCcEEEEECCC-----CeEEEEee---CCCCcEEEEEEcCCCCc
Q 005254 100 G-------HDGPAIGMACHPSG---G---LLATAGADRKVLVWDVDG-----GFCTHYFK---GHKGVVSSILFHPDTDK 158 (706)
Q Consensus 100 ~-------~~~~v~~~~~s~~~---~---~l~~~~~d~~i~vw~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~ 158 (706)
+ -...|..|.|-+.. + -|++...+|.++-|-+.. .+..+.+. .+...|.++.++|.. +
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~ 160 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-R 160 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-C
Confidence 2 23567777776532 1 355556677777776532 22333332 247789999999964 3
Q ss_pred eEEEEEecCC----------eEEEEECCCCeeEE-----------------------E---e---ecccceEEEEEEecC
Q 005254 159 SLLFSGSDDA----------TVRVWDLLAKKCVA-----------------------T---L---DKHFSRVTSMAITSD 199 (706)
Q Consensus 159 ~~l~~~~~dg----------~i~vwd~~~~~~~~-----------------------~---~---~~~~~~v~~~~~~~~ 199 (706)
.+++.|.... -+..|.+-++.+-. . + ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 3444444322 26677653321100 0 0 113467899999999
Q ss_pred CCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 200 GSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+.|++...+|.|.+|++...+........+
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 9999999999999999999888776665544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-08 Score=85.67 Aligned_cols=182 Identities=10% Similarity=0.122 Sum_probs=116.7
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.|+++.++++.-.--+|.+|++..++....- -......+.|.|+|+++..-+..--+++|.+|..+......+...
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 78889886666555668999999977654321 145567789999999996566667799999999987522221111
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-CcEEEEeCCCc--cE--EEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RTACVWRLPDL--VS--VVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
.......-.........+.+++||++|.++... ..|.+|.+... ++ ......+........|++++++|+++..+
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 111111112234567889999999999987542 36778876543 22 22223344557889999999999988875
Q ss_pred -CcEEEEEcC--CCceEEEEe-ecccCEEEEEEE
Q 005254 558 -KTIKIWSIS--DGSCLKTFE-GHTSSVLRASFL 587 (706)
Q Consensus 558 -g~i~iwd~~--~~~~~~~~~-~~~~~i~~~~~s 587 (706)
..|.+|.++ +|++-.... .......|+.|.
T Consensus 312 sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 312 SDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 458888764 444433222 133345566653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-09 Score=112.50 Aligned_cols=253 Identities=13% Similarity=0.082 Sum_probs=162.3
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC--C------------cceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--H------------SEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~------------~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
..+++.+.++.++++-+.++.|+++|...... ..+.+ . -.....+. +.++++.+.++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCce
Confidence 35666666777888888889999999865433 22222 1 11234454 66777764555556678
Q ss_pred EEEEeCCCceEEEEEeC----------------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc----cc
Q 005254 423 VRLWDSESRCCVGVGTG----------------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PM 482 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~ 482 (706)
|+.+|..++........ .-.....++++|++..++++...++.|++|+...+...... ..
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99999887654322110 01234579999965657788888999999998654210000 00
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCCccEEEEEee---------------------cCCcEE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPDLVSVVTFRG---------------------HKRGIW 540 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~---------------------~~~~v~ 540 (706)
...........-.....++++|+++.| ++.+.++.|++||+.++.......+ .-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 000000000111345679999999855 4555678999999987653221100 011246
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-------------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.++++++|+.+++-..++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88999999988888899999999998776543221 11235678999999998888888999999999
Q ss_pred CCCeE
Q 005254 608 RTGEC 612 (706)
Q Consensus 608 ~~~~~ 612 (706)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98864
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-09 Score=90.01 Aligned_cols=228 Identities=16% Similarity=0.052 Sum_probs=154.5
Q ss_pred EEEEeeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
.|+.|+..|...+|...+.+.. .....+...|+-+.-.-+...-+..++.|.++++.++..... .....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~----------~~~~h 155 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN----------KFAVH 155 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc----------cceee
Confidence 3899999999999999865433 333334444433322222233577888999999999876531 11111
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
...-.+.++++++|++++++.+....|..|.+.... .+. ......+.-.+..|+.....+|++..||++.|||++..
T Consensus 156 ~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 156 NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 111237889999999999999999999999887542 222 22334455567899999999999999999999999865
Q ss_pred ceE-----EEEeecccCEEEEEEEeCCC--EEEEEeCCCCEEEEECCCCeEEEEecc-------CCCc-EEEEEEcCCCC
Q 005254 569 SCL-----KTFEGHTSSVLRASFLTRGA--QIVSCGADGLVKLWTVRTGECIATYDK-------HEDK-IWALAVGKKTE 633 (706)
Q Consensus 569 ~~~-----~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~-v~~~~~s~~~~ 633 (706)
... .+-..|.+.+..+.|++-|. +|+..-.-+.+.+-|+++++..+.+.. |... |..-.|+.++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 332 22234889999999998654 455555557899999999876655532 3333 77777887777
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
.+.+..++. +.-|++.+
T Consensus 316 s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 316 SNDVKNELQ-GAEYNILS 332 (344)
T ss_pred ccccccchh-hheeeccc
Confidence 666655543 44555543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.8e-11 Score=124.04 Aligned_cols=221 Identities=18% Similarity=0.280 Sum_probs=161.8
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+-..+.++. ..|.... -++|+.||.+++|....++.+..++ .....|+.+.|+.+|. ....+..||.+.+|....
T Consensus 2207 ~v~~v~r~~--sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ccCceeeec--CCCCCce-EEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCC
Confidence 344556664 4455554 8899999999999999888776654 3348899999999987 678888899999999873
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee---CCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCC
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
. .......|......+.|-. ..+++++ .++.+.+||..-. ..-..-..|.+.++++++.|..+
T Consensus 2283 k-----------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2283 K-----------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred c-----------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce
Confidence 2 4444556777777777765 4566554 5678999996432 22222377999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc---CCCc--E-
Q 005254 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK---HEDK--I- 623 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~--v- 623 (706)
.|++|+.+|.|++||++..++++.++. +. ...++++|+..|.++||++..-..+..+.. |.+- .
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~ 2419 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI 2419 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc
Confidence 999999999999999988777776653 33 456899999999999999988777766652 2111 0
Q ss_pred -EEEEEcCCCCEEEEEeCCCc
Q 005254 624 -WALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 624 -~~~~~s~~~~~l~~~~~dg~ 643 (706)
..+-.. .++.|.+++.||+
T Consensus 2420 g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2420 GMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred Cceeeec-cCceEEEecCCCC
Confidence 222222 2446777777774
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=110.88 Aligned_cols=172 Identities=17% Similarity=0.304 Sum_probs=135.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-------CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK 125 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 125 (706)
+..+.||...|.+++--.+.+-+++++.|.+|++|.++. ..+..++..|+.+|..+.|-.+.++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 466789999999998877888899999999999999863 34677888999999999999999999876 688
Q ss_pred EEEEECCCCeEEEEee--CCCCcEEEEEEcCCCCceEEEE-EecCCeEEEEECCCCeeEEEee-----cccceEEEEEEe
Q 005254 126 VLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFS-GSDDATVRVWDLLAKKCVATLD-----KHFSRVTSMAIT 197 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~ 197 (706)
|.+||.--++++.... ...+.+..+...++-+..+++. ++...+|+++|.+.++-...++ +..+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999998777665322 2233444444455533334444 4788999999999887666654 344668899999
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeee
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
+.|+.++.+-.+|.|.+.|.++++.+...
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999999999999999999998866543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-08 Score=99.90 Aligned_cols=188 Identities=9% Similarity=0.031 Sum_probs=110.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCc----------cE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD----------TI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~----------~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+++.++....+.+.-+|..+|+.+-..+.... .+ ..++. ++..++.++.++.+.-+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 44444444445889999999998754432210 00 01111 3556777888999999999999998877
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEE-EEEcC--CCCceEEEEEecCCeEEEEEC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS-ILFHP--DTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+.......+... .+..++++..++.+..+|.++|+.+..+......... ..-+| .++. ++.++.+|.+...|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~--v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGG--AIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCE--EEEEcCCCEEEEEEc
Confidence 644321111112 2446777778899999999999988776532111100 00011 1123 677788899999999
Q ss_pred CCCeeEEEeecccc-------eEEEEEEec--CCCEEEEEeCCCEEEEEeCCCCcce
Q 005254 176 LAKKCVATLDKHFS-------RVTSMAITS--DGSTLISAGRDKVVNLWDLRDYSCK 223 (706)
Q Consensus 176 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~ 223 (706)
.+|+.+...+.... ....+.-+| .+..++.++.+|.+..+|..+++.+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 99887655421100 000011111 2345666667777777777766544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-08 Score=97.40 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=92.3
Q ss_pred CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc-CEEEE
Q 005254 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS-SVLRA 584 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~ 584 (706)
+..+++++.+|.+..+|..+++.+...... ....+. ..+..++.++.+|.+..+|..+++.+-....... .....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp 331 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP 331 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence 456777778999999999999877654321 111222 2466788888999999999999987654331111 11112
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA-LAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.. .+.+|+.++.||.+++.|..+|+.+...+.....+.+ ..+ .+..|+.++.||.|..+++
T Consensus 332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 22 2458888999999999999999998887654333332 222 2446888899999988775
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-09 Score=87.06 Aligned_cols=234 Identities=10% Similarity=0.026 Sum_probs=154.9
Q ss_pred CCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
...+++.++..|.+.+|...+.+. ......+...|.-.. -.-+...-+..++.|.++++.+++.+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~--r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK--RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhh--hhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 566889999999999999986554 334444555444333 11122222666778888888877655433333222234
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
+.+++++++++ ++++.+....|..|.++...... ...........-.+..|+.....+|+++.||++.|||+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~-------~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYI-------ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCcccee-------eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 88899999988 88999999999999998653211 11122333344567889999999999999999999999
Q ss_pred CCccEE-----EEEeecCCcEEEEEEccCCC--EEEEecCCCcEEEEEcCCCceEEEEee-------ccc-CEEEEEEEe
Q 005254 524 PDLVSV-----VTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFEG-------HTS-SVLRASFLT 588 (706)
Q Consensus 524 ~~~~~~-----~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~-~i~~~~~s~ 588 (706)
+..... .+-+.|.+.+..+.|++.|. +|+..-.-+.+.+-|+++++..+.+.. |.. .|....|+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 865322 22335899999999998653 455555567799999998866554432 222 266677777
Q ss_pred CCCEEEEEeCCCCEEEEECCC
Q 005254 589 RGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~ 609 (706)
++.-+.+.+++. +.-|++.+
T Consensus 313 ~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 313 ENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred CCcccccccchh-hheeeccc
Confidence 766665555432 45555543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-09 Score=100.85 Aligned_cols=189 Identities=8% Similarity=0.018 Sum_probs=123.6
Q ss_pred ceEEcCCCCE-EEEeeC----CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-ec--cCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSF-IACACG----ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GH--SREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~-l~~~~~----~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~--d~~i~iwd~~~~~~~ 95 (706)
...|||||+. +++... ..|+++|+.+++...... ..+...+..|||||+.|+.. +. +..|.++|+.+++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~- 269 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL- 269 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-
Confidence 4789999985 665432 269999999988655443 45566778899999887754 32 45788889888764
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec------
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD------ 166 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------ 166 (706)
..+..+........|+|||+.|+..+.. ..|.+.|+.+++....... .. ....|+|+|+..++.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCC
Confidence 3444444434456899999988887632 2688889988876443321 11 1248999998733332221
Q ss_pred C-CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCC
Q 005254 167 D-ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRD 219 (706)
Q Consensus 167 d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~ 219 (706)
. ..|.+.|+.++... .+... +......|+|||+.++....++ .+.+.+++.
T Consensus 347 ~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 347 NTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 1 36888898877643 34332 2334588999999887765432 455666644
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=121.15 Aligned_cols=191 Identities=18% Similarity=0.319 Sum_probs=157.4
Q ss_pred cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 57 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 57 ~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
+.+-..|.++.-+|...+.++|+.||.|++|.+..+..+..++. -...|+.+.|+.+|+....+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 34556788888899999999999999999999999988887764 23789999999999999999999999999987 67
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEe---cCCeEEEEECCC--C-eeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGS---DDATVRVWDLLA--K-KCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
+....+.|......+.|.. . ++++++ .++.+.+||..- + ..+. ..|.+.++++++.|.-++|++|+.+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred ceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 7777888999999999976 2 266654 578999999642 2 2333 7899999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
|.|++||++..+....++.-. ....|++++..|.+++|++..-.+
T Consensus 2358 G~v~l~D~rqrql~h~~~~~~--------------------------------~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQALD--------------------------------TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CcEEEeehHHHHHHHHhhhhh--------------------------------hhheeeccCcccceEEEEccccch
Confidence 999999999887776655311 123789999999999999987643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=101.67 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=115.2
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCe----EEEeecCCCccEEEEEEccCCCEEEE---EeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNAS----IKSTIEGGSDTITALALSPDDKLLFS---SGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~----~~~~l~~~~~~i~~l~~s~~~~~l~s---~~~d~~i~iwd~~~~~~~ 95 (706)
.+..+++++++|++... ...+++..... .+..... ...-+++.|..+...... +++...+.+|+...+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~- 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC- 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence 67888999999999887 55566654333 2222222 222244444444444443 45566777787766444
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
..+-||-..++.++|+||++.++++..|..|+|-....-..+..+ -||+.-|..++..++ .. |++++.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~--LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YL--LLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ce--eeecCCCCcEEEEe
Confidence 345569999999999999999999999999999888766666554 479999999999875 33 89999999999999
Q ss_pred CCCCeeEEEee
Q 005254 175 LLAKKCVATLD 185 (706)
Q Consensus 175 ~~~~~~~~~~~ 185 (706)
+.+|+.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=101.49 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE----EEEEeecCCcEEEEEEccCCCEEEE---ecCCCcEEEEEcCCCc
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVIT---ASGDKTIKIWSISDGS 569 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 569 (706)
...+..++.++++|++..+....++++..... ..... -...-+++.|..+...... ++....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34566788999999999888887887765432 22222 2223344455444444433 4455667777766544
Q ss_pred eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+. .+-||-+.++.++++||+++++++..|..|+|-.....-.+..+- ||..-|..++.-++ ..|+++|.|+++++||
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 44 445799999999999999999999999999998887766666665 79999999998655 4589999999999999
Q ss_pred CCchhHHHH
Q 005254 649 DSTAAEREE 657 (706)
Q Consensus 649 ~~~~~~~~~ 657 (706)
+.+++....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999987643
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-08 Score=95.01 Aligned_cols=213 Identities=9% Similarity=0.024 Sum_probs=129.9
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE-EeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV-TGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~-~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
..|.+-|...........+ . ...... ++|+++.+++ +... +..|.++|+.+++...... ..+......|+||
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCC
Confidence 3566655554433323332 2 333444 8899885344 3333 3568899998887655443 4555667889999
Q ss_pred CCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCcc
Q 005254 453 LQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-R--TACVWRLPDLV 527 (706)
Q Consensus 453 ~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~ 527 (706)
|+.++++.+.++ .|.++++..+. ...+..+........|+|||+.|+..+.. + .|++.|+.+++
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 987777766554 56666665442 11222222223456899999988776642 3 58888888776
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCC---------CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
......... ....|+|||+.|+..... ..|.+.|+.++... .+... .......|+|||+.|+....
T Consensus 313 ~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 313 VEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred eEeCccCCC---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 644332111 124899999998776643 36888898877653 33322 22335789999998877665
Q ss_pred CC---CEEEEECCC
Q 005254 599 DG---LVKLWTVRT 609 (706)
Q Consensus 599 dg---~i~iwd~~~ 609 (706)
++ .+.+.++..
T Consensus 388 ~~~~~~L~~~~l~g 401 (419)
T PRK04043 388 LGNQSALGIIRLNY 401 (419)
T ss_pred cCCcEEEEEEecCC
Confidence 43 356667643
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=105.88 Aligned_cols=203 Identities=20% Similarity=0.300 Sum_probs=150.3
Q ss_pred eeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCe-EEEeec-CCCccEEEEEEccCC--CEEEEEeccCeEEEEECC
Q 005254 15 VLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTIE-GGSDTITALALSPDD--KLLFSSGHSREIRVWDLS 90 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l~-~~~~~i~~l~~s~~~--~~l~s~~~d~~i~iwd~~ 90 (706)
.+..--+.+++.++|.|+-+|.++.-.+++.|+...- +.+-|. ...-.|-.+.|+|.. .+-++......-.+|++.
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 3333334458999999999999998889999886542 222222 124467888898854 334444444467789985
Q ss_pred C---CeEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCe-EEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 91 T---LKCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 91 ~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
. ...-..+.+|+..|+.+-|.|.. ..+|+++.|..+..||+.+.. .+..+..-...-..+.|+..... +.+.+
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~--vlass 177 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN--VLASS 177 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc--hhhhc
Confidence 3 34555678999999999999965 478899999999999998764 45555555566678899876544 66667
Q ss_pred cCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCC
Q 005254 166 DDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 166 ~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~ 219 (706)
....|.+||.+.| .++..+++|...|..+.|.. ....+.+.+.||+|++||...
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 7788999999866 47788899999999999865 334688899999999999864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-09 Score=102.09 Aligned_cols=497 Identities=13% Similarity=0.111 Sum_probs=253.2
Q ss_pred eEEEEECCCCCEEEEec----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 105 AIGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
-+-..|+|...++|+++ ..|+|.||- ++|++..... ..-.++++||+|. ..+|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCCcee
Confidence 34467999999998876 457888874 5666443322 2334677999995 44689999999999999887777
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec-----CcceeeeEE--eeCCC------------
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-----TYEMVEAVC--AIPPG------------ 241 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-----~~~~~~~~~--~~~~~------------ 241 (706)
-.....|..+|..+.||++|..|+++..-|.+.+|.......+...+ ......-.+ ..+++
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 66667899999999999999999999999999999987433222221 122222222 22221
Q ss_pred ---CCcccccc---cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 242 ---SAFDSFLS---SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 242 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
+.+..... ..............+..|+.++.+|+|+..|-...+........ ...+.|.+.
T Consensus 174 gDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS-------------~vQmLf~~~ 240 (1416)
T KOG3617|consen 174 GDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDS-------------EVQMLFMGY 240 (1416)
T ss_pred CchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccc-------------hHHHHHhcc
Confidence 11111111 01111112222334567888888999888886655332211110 122334455
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC---cEEEEEecCCcEEEEeCCCceeeEee
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE---QYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
...+.+...+-++.++-...... ......+..+...+ .-++++...|.++- ... .-
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~--------------~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~------~eK-yg 299 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGT--------------SEERCAVKVSGKLGGRQGGIACSESSGVLRK------SEK-YG 299 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCc--------------hHHhhhhhhccccCCccCccccccccccccC------Ccc-hh
Confidence 55566666666665554433211 11111111111111 11333333331110 000 01
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-------eEEEE---EeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-------CCVGV---GTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
......+.|+. +...+.. +..|...|.+.+|--... .-... .....+.|+.+.|.|-.. .++.-+.
T Consensus 300 ~e~ge~~~c~c--Y~~~~~~-l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~-~~avn~~ 375 (1416)
T KOG3617|consen 300 LELGEGILCMC--YGEKEIR-LWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKS-TAAVNTE 375 (1416)
T ss_pred hhcCCceEEEE--EeccceE-EEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccc-hhhhhhh
Confidence 11234566775 5555555 889999999999953221 11222 234457888999988543 3333322
Q ss_pred CCeEEE-------------EEecCCCCCCCcccccceeEEEee------cCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 463 DHTIKV-------------WSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 463 d~~i~i-------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
...+.+ |-+.... ..........+ ..-++..++.+. .-++.....+|..|++
T Consensus 376 ~~v~ll~E~~l~~~h~~~~~A~q~ss------~S~~L~hc~sGv~~~l~~~~~~~gi~l~e---~~lvvwNgr~v~~y~l 446 (1416)
T KOG3617|consen 376 EDVVLLGENSLTVKHRGKMAAIQTSS------NSFTLLHCTSGVSQDLKLSIPSAGICLGE---KQLVVWNGRTVVTYDL 446 (1416)
T ss_pred hheeeeccCchHHHHhhhhHHhhhcC------CceEEEeeccchhhhhhhccchhhheecc---ceEEEEcCceEEEEEe
Confidence 221111 1111100 00000000000 011222333322 2223345567777777
Q ss_pred CCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee--cccCEEEEEEEeCCCEEEEEeCC
Q 005254 524 PDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 524 ~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d 599 (706)
.+..... .........+++++.. +-+.+...|. |.++.+. |...+.+.. -.+.+.-+. -.|.+|+.+...
T Consensus 447 q~SG~la~~~~~tF~cet~~la~~n--qN~ycies~~-Vfvrt~q-Gtv~q~i~~seiEg~~~~ld--i~g~~l~v~t~~ 520 (1416)
T KOG3617|consen 447 QTSGSLATIQCTTFSCETTSLAIVN--QNLYCIESDK-VFVRTLQ-GTVRQEISLSEIEGVVVLLD--IMGELLIVQTVS 520 (1416)
T ss_pred cccchhHHHhhhhhccccchHhHhh--cceEEeccCc-EEEEecc-hhhhhhccchhccCceehhh--hccceeEEeehH
Confidence 5321111 1111112223333332 2234433333 6666553 433333322 223343333 357799999888
Q ss_pred CCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCE--EEEEeC----CCcEEEEECCchhHHHHH
Q 005254 600 GLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEM--FATGGS----DALVNLWHDSTAAEREEA 658 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~--l~~~~~----dg~i~vw~~~~~~~~~~~ 658 (706)
+.++-+|+...++..... ...+.+..+..+..|.. +..+.. =.++..||++.+......
T Consensus 521 ~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~ 593 (1416)
T KOG3617|consen 521 TVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMN 593 (1416)
T ss_pred HHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhh
Confidence 888888886554332221 22345566655555442 222222 246899999888765443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=105.32 Aligned_cols=289 Identities=17% Similarity=0.256 Sum_probs=185.5
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC---
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--- 430 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--- 430 (706)
+..+...| -++-++.++.. .+.+.|+...-....+-.|.. .+....|...+.....+++ .....-.+|++..
T Consensus 27 ~~a~si~p-~grdi~lAsr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 27 FNAVSINP-SGRDIVLASRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSS 103 (1081)
T ss_pred ccceeecc-ccchhhhhhhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCc
Confidence 33444443 44444555543 355556654322222222222 2333444455555553444 4445556788653
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
...-..+.+|...++.+.|.|+.+..+++++-|-.+..||++.... .......-....+.++|+.....+.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------p~ys~~~w~s~asqVkwnyk~p~vl 174 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------PFYSTSSWRSAASQVKWNYKDPNVL 174 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------ceeeeecccccCceeeecccCcchh
Confidence 3344457789999999999999999999999999999999987532 2333333445567788887555566
Q ss_pred EeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCceEE-EEeecccCEEEEEEE
Q 005254 511 TGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK-TFEGHTSSVLRASFL 587 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s 587 (706)
+.+..+.|++||++.+ .++..+++|...|..++|.. ....+.+++.||+|+.||.+...... .......+|..-.+.
T Consensus 175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 6677888999999866 67788899999999999876 34568889999999999986543221 111234566666666
Q ss_pred eCCC--EEEEEeCCCCE---------EEEECCC-CeEEEEeccCCCcEEEEEEcC--------CCC--EEEEEeCCCcEE
Q 005254 588 TRGA--QIVSCGADGLV---------KLWTVRT-GECIATYDKHEDKIWALAVGK--------KTE--MFATGGSDALVN 645 (706)
Q Consensus 588 ~~~~--~l~~~~~dg~i---------~iwd~~~-~~~~~~~~~~~~~v~~~~~s~--------~~~--~l~~~~~dg~i~ 645 (706)
|-|. ++.---.+..+ ..|+..+ .+++..+.+|.+.|....|-. |.+ .|+|=+.|..++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 6443 22111111123 3344443 368899999999987766632 222 689999999999
Q ss_pred EEECCchhHHH
Q 005254 646 LWHDSTAAERE 656 (706)
Q Consensus 646 vw~~~~~~~~~ 656 (706)
+|.+.+.....
T Consensus 335 lWpI~~~i~~~ 345 (1081)
T KOG0309|consen 335 LWPIDSQIQRL 345 (1081)
T ss_pred eeeccHHHHHh
Confidence 99998876543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=83.88 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=147.7
Q ss_pred ccceEEcC-CCCEEEEeeCC--eEEEEEccCCeEEEeecCCCcc--EEEEEEccCCCEEEEE-----eccCeEEEEECC-
Q 005254 22 GGPLVVSS-DGSFIACACGE--SINIVDLSNASIKSTIEGGSDT--ITALALSPDDKLLFSS-----GHSREIRVWDLS- 90 (706)
Q Consensus 22 ~~~~~~s~-dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~--i~~l~~s~~~~~l~s~-----~~d~~i~iwd~~- 90 (706)
++.++.+| ++..++++-.- ...+||..+++..+.+....+. --.-.||+||++|++. +..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45799999 55556666543 7999999999988777543332 2357899999999986 346899999999
Q ss_pred CCeEEEEeeccCCCeEEEEECCCCCEEEEec------------------CCCcEEEEECCCCeEEEE--e--eCCCCcEE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAG------------------ADRKVLVWDVDGGFCTHY--F--KGHKGVVS 148 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~--~--~~~~~~v~ 148 (706)
+.+.+.++..|.-.-..+.+.|||+.|+++- .+.++..-|..+|+.+.. + .-|...|.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 7788999998888888999999998888863 134677778888888766 4 33788899
Q ss_pred EEEEcCCCCceEEEEEe-cCC-------eEEEEECCCCeeEEEee-------cccceEEEEEEecCCCEEEEE-eCCCEE
Q 005254 149 SILFHPDTDKSLLFSGS-DDA-------TVRVWDLLAKKCVATLD-------KHFSRVTSMAITSDGSTLISA-GRDKVV 212 (706)
Q Consensus 149 ~~~~~~~~~~~~l~~~~-~dg-------~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~-~~dg~i 212 (706)
.+++.++|. ++.+. ..| -|-+++. ++.+..+. .-.+.+-++++++++.++++. -..+.+
T Consensus 167 HLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 167 HLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 999999876 44433 222 2333432 33222221 234678999999999877554 467899
Q ss_pred EEEeCCCCcceeeecCcc
Q 005254 213 NLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~ 230 (706)
.+||..+++.+...+..+
T Consensus 242 ~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPD 259 (305)
T ss_pred EEEECCCCCEeeccccCc
Confidence 999999999887766543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-07 Score=84.51 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=97.4
Q ss_pred cCCCCEEEEeeC----------CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE
Q 005254 28 SSDGSFIACACG----------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS 97 (706)
Q Consensus 28 s~dg~~l~~~~~----------~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 97 (706)
|||++++++... +.+.|||+.+++....... ...+....|||+|+++|... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 799999998543 4699999999877554433 67789999999999999875 56899999988754432
Q ss_pred -eecc----------------CCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeCCC---CcEEEEEEcCCC
Q 005254 98 -WKGH----------------DGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHK---GVVSSILFHPDT 156 (706)
Q Consensus 98 -~~~~----------------~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 156 (706)
..+. -+.-.++.||||+++||.... +..|..+.+.. ..... ..+..+.+-.-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCC
Confidence 1220 112356889999999998753 34444443210 11111 134444443333
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEE-Ee----ecccceEEEEEEecCCCEEEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVA-TL----DKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~ 205 (706)
+.+-. -.+.++|+.+++... .. ......+..+.|.++++.++.
T Consensus 153 ~~np~------v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 153 DPNPR------VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp S---E------EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CcCCc------eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 33111 236778988887532 11 123457889999999874443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-07 Score=80.26 Aligned_cols=216 Identities=14% Similarity=0.047 Sum_probs=141.6
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe-cCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS-KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+..+.++++-...+.|..|+..+++...... .. ...+++. +++. ++.+...+ +.++|...++ .
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~g~--l~v~~~~~-~~~~d~~~g~--------~ 72 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPDGR--LYVADSGG-IAVVDPDTGK--------V 72 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTTSE--EEEEETTC-EEEEETTTTE--------E
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccCCE--EEEEEcCc-eEEEecCCCc--------E
Confidence 666567767777788999999998886654322 22 6777777 5643 44454444 4555766542 1
Q ss_pred ceeEEEe--e-cCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-
Q 005254 485 KAKAVVA--A-HGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI- 552 (706)
Q Consensus 485 ~~~~~~~--~-~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~- 552 (706)
....... . .....+.+++.|+|++.++.... |.|..++.. ++... +...-.....++|+|+++.|+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEE
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheee
Confidence 1111111 1 34567899999999977776543 457777766 44333 333456678999999998775
Q ss_pred EecCCCcEEEEEcCCCce----EEEE---eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE
Q 005254 553 TASGDKTIKIWSISDGSC----LKTF---EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~----~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
+-+..+.|..+++..... ...+ ....+..-.+++..+|+..++....+.|.++|.. |+.+..+......+++
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~ 229 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTN 229 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEE
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEE
Confidence 556788899999863322 1222 2112237789999999988888888999999987 9999888866668999
Q ss_pred EEE-cCCCCEEEEE
Q 005254 626 LAV-GKKTEMFATG 638 (706)
Q Consensus 626 ~~~-s~~~~~l~~~ 638 (706)
++| .++.+.|...
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 999 4665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.6e-10 Score=101.77 Aligned_cols=250 Identities=15% Similarity=0.232 Sum_probs=175.4
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
...+.+|...+..+. ...+.+. +++++.|.+|++|.++. ..+..+++.|..+|..+.|-.+.+ .+ .+
T Consensus 728 L~nf~GH~~~iRai~--AidNENS-FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i--~S 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIA--AIDNENS-FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SI--AS 801 (1034)
T ss_pred eecccCcHHHhHHHH--hcccccc-eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-ee--ee
Confidence 446778998888886 5455555 99999999999998763 345667889999999999998855 34 45
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCccEEEEEee-----c
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVTFRG-----H 535 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~ 535 (706)
.||.|.+||--.+..-... ......+....|.|+.- -+...+..| +...+|+++|.+..+-...++- .
T Consensus 802 cD~giHlWDPFigr~Laq~-----~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQM-----EDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ccCcceeecccccchhHhh-----hcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 6788999996543211100 00111112222333321 134445444 6788999999998877666653 4
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE-EECCCCeEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL-WTVRTGECIA 614 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~ 614 (706)
+.-+.+++..+.|++++.+-.+|.|.+.|.++|+.+..++...-....++ .|.++.|+....|.++.+ |...+|....
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 45688999999999999999999999999999999988875544444444 356678888888999999 9888887766
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 615 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.+....+..-+. .-|.-|+++.....+.+|.-....
T Consensus 955 q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 955 QDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred ccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhh
Confidence 6665444433222 246678888888888998754443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-09 Score=88.92 Aligned_cols=250 Identities=22% Similarity=0.302 Sum_probs=165.7
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-----EEEEEeCCC------------cCeEEEEEec-CCCeEEE
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-----CVGVGTGHM------------GAVGAVAFSK-KLQNFLV 458 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~-~~~~~l~ 458 (706)
..|+++. +...+.+ +++|...|+|.+|.-+... ....++.|. ..|..+.|.. .++..++
T Consensus 27 d~ItaVe--fd~tg~Y-latGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 27 DKITAVE--FDETGLY-LATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ceeeEEE--eccccce-EeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4566665 6666666 9999999999999765432 112233332 3566677654 4556677
Q ss_pred EecCCCeEEEEEecCCCC------------------CCCcccc--------------ccee-EEEeecCcceEEEEEcCC
Q 005254 459 SGSSDHTIKVWSFDGLSD------------------DAEQPMN--------------LKAK-AVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~------------------~~~~~~~--------------~~~~-~~~~~~~~~i~~~~~s~~ 505 (706)
..+.|.+|++|.+..... ....+.. ..+. .....|...|.++.+..|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888999999999864410 0000000 0011 112457777899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCcc---EEEEEeecCC-----cEEEEEEccC-CCEEEEecCCCcEEEEEcCCCce------
Q 005254 506 DSLVCTGSQDRTACVWRLPDLV---SVVTFRGHKR-----GIWSVEFSPV-DQVVITASGDKTIKIWSISDGSC------ 570 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~-----~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~------ 570 (706)
...++++. |-.|.+|++.-.. .+..+++|.. -|++..|+|. ...+...+..|.|++-|++...+
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 98888764 6789999986432 2334455543 4788999995 35566677889999999973211
Q ss_pred EE----------EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-eEEEEeccCC------------CcE---E
Q 005254 571 LK----------TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYDKHE------------DKI---W 624 (706)
Q Consensus 571 ~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~------------~~v---~ 624 (706)
+. -+.+-...|..+.|+++|+|+++-+. -+|++||+... .++.++.-|. +.| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 11122357888999999999998654 67999999754 4677765442 233 3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 625 ALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+.||.|.+.+++|+..+..-+|-..+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCCcccccccccccceeeecccc
Confidence 578999999999999888888887433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-06 Score=72.17 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=80.2
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEE
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS 193 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 193 (706)
..+++.|+..+.+.--|..+|+.+..-. -..+|.+-+.. -++. ++.|+..|.+++.+..+|.....+.....-=..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdf--VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDF--VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCE--EEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 3467777888888888999998776533 34445444443 2455 899999999999999999887776543322223
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
....+++..++.++.|++.+..|.++..++....
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 3456789999999999999999998877665543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-06 Score=79.30 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=142.2
Q ss_pred EeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE
Q 005254 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 437 (706)
+..|.+.++.++.+-...+.|..|+..++......... ...+. +..++.. ++.+.. +.+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~--~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMA--FDRPDGR-LYVADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEE--EECTTSE-EEEEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEE--EEccCCE-EEEEEc-CceEEEecCCCcEEEEe
Confidence 34566667777888778899999999988765422222 33443 5534565 444444 44556699888655444
Q ss_pred eC-----CCcCeEEEEEecCCCeEEEEecCC--------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 438 TG-----HMGAVGAVAFSKKLQNFLVSGSSD--------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 438 ~~-----~~~~v~~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
.. .......+++.++|. +.++.... |.+..++.. . ........-...+.++|+|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~-----------~~~~~~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G-----------KVTVVADGLGFPNGIAFSP 143 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----------EEEEEEEEESSEEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C-----------eEEEEecCcccccceEECC
Confidence 32 456778899999988 55554432 445555544 1 2223333345578999999
Q ss_pred CCCEEE-EeeCCCcEEEEeCCCccE----EEEE---eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 505 NDSLVC-TGSQDRTACVWRLPDLVS----VVTF---RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 505 ~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++.|+ +-+..+.|..+++..... ...+ ....+..-.+++..+|++.++....+.|.++|.+ |+.+..+..
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 998776 556678899998853221 1222 2222347889999999988888788999999976 999888887
Q ss_pred cccCEEEEEEE-eCCCEEEEEe
Q 005254 577 HTSSVLRASFL-TRGAQIVSCG 597 (706)
Q Consensus 577 ~~~~i~~~~~s-~~~~~l~~~~ 597 (706)
....+++++|. ++.+.|+..+
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEe
Confidence 76789999995 5666665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=6e-07 Score=81.38 Aligned_cols=220 Identities=11% Similarity=0.023 Sum_probs=141.1
Q ss_pred CCcEEEEeCCCceeeEeeeCCc--ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHS--EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+|.|..+|..+++.+....... ....+. ..+.++. +++++.++.+..||..+|+.+....... .+.......+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT---AVPDGGR-VYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET---EEEETTE-EEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce---EEEeCCE-EEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecc
Confidence 5789999999999887775421 222211 2335666 6667899999999999999988776522 2222122233
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eec--C-cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAH--G-KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
+ .++.+..++.+..+|..+++ ..... ... . ..........++..++++..++.|..+|+.+|+.
T Consensus 77 ~--~v~v~~~~~~l~~~d~~tG~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 77 G--RVYVGTSDGSLYALDAKTGK----------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp T--EEEEEETTSEEEEEETTTSC----------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE
T ss_pred c--ccccccceeeeEecccCCcc----------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE
Confidence 2 46666678899999977664 22221 111 0 1112223333477888888899999999999999
Q ss_pred EEEEeecCCc----------EEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 529 VVTFRGHKRG----------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 529 ~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
+......... +..-....++ .++.+..++.+.-+|+.+++.+.... ...+.. ....++..|+.++.
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSS 220 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEET
T ss_pred EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeC
Confidence 8887764422 1122222344 67777777754444999998664332 223222 25577889998889
Q ss_pred CCCEEEEECCCCeEEEE
Q 005254 599 DGLVKLWTVRTGECIAT 615 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~ 615 (706)
++.|..||+.+|+.+.+
T Consensus 221 ~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEeE
Confidence 99999999999998653
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-07 Score=84.06 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=138.5
Q ss_pred CCeEEEEEccCCeEEEeecCC--CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCE
Q 005254 39 GESINIVDLSNASIKSTIEGG--SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~--~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 116 (706)
.+.|..+|+.+|+.+-...-. .....+. ..+++.++++++.++.|..||..+|+.+.++.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 357899999999988666431 1222222 333566777778999999999999999988875 23222212 223456
Q ss_pred EEEecCCCcEEEEECCCCeEEEEe-eCCC---CcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccce--
Q 005254 117 LATAGADRKVLVWDVDGGFCTHYF-KGHK---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-- 190 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 190 (706)
+++++.++.+..+|..+|+.+... .... ..........+++. ++.+..++.|..+|+.+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR--LYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE--EEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE--EEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 666667889999999999998874 3221 11122222222454 788888999999999999998877654322
Q ss_pred --------EEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 191 --------v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
+..-....++ .++.++.++.+..+|+.+++.+...+ ........ ...+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~-~~~~~-------------------- 213 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP-SVDGG-------------------- 213 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE-ECCCT--------------------
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc-eeeCC--------------------
Confidence 1222233344 77777777754444999998665333 22222211 22221
Q ss_pred cceEEEEecCCCeEEEEECCCCeEE
Q 005254 263 LEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.++..+.++.+..||..+++..
T Consensus 214 ---~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 214 ---TLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ---EEEEEETTTEEEEEETTTTEEE
T ss_pred ---EEEEEeCCCEEEEEECCCCCEE
Confidence 5666668999999999998653
|
... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-10 Score=95.01 Aligned_cols=169 Identities=18% Similarity=0.260 Sum_probs=127.2
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL- 526 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~- 526 (706)
+|+-+-..+-++.+.+..+-+-++.++- ...+. ..+.|.++.|...++++..|+.+|.|..+|++..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc
Confidence 4443322234666777778888887652 22222 5677888999988999999999999999999865
Q ss_pred ----cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCce---EEEEeecccCEEEE--EEEeCCCEEEEE
Q 005254 527 ----VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRA--SFLTRGAQIVSC 596 (706)
Q Consensus 527 ----~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~--~~s~~~~~l~~~ 596 (706)
.+...+ -|...|+++..-. ++++|.+.+.+|.|++||++--++ +.++++|...-..+ ...+....++++
T Consensus 286 qG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 233333 3889999998777 788999999999999999987777 88999987654444 334566789999
Q ss_pred eCCCCEEEEECCCCeEEEEeccCC----CcEEEEEEc
Q 005254 597 GADGLVKLWTVRTGECIATYDKHE----DKIWALAVG 629 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s 629 (706)
+.|-..+||.+++|..+.+++... ..+.+++|+
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999999999999999999887432 345666664
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-07 Score=77.37 Aligned_cols=201 Identities=13% Similarity=0.156 Sum_probs=127.8
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 526 (706)
++.+.+|+ +++.-+|..|.+-..+..-... .............-..++||||+.+||.+...|+|++||+...
T Consensus 3 ~~~~~~Gk--~lAi~qd~~iEiRsa~Ddf~si-----~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGK--LLAILQDQCIEIRSAKDDFSSI-----IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCc--EEEEEeccEEEEEeccCCchhe-----eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 45566665 5555566666665544321100 0011122223344578999999999999999999999998754
Q ss_pred cEEEEEee-------cCCcEEEEEEccCC------CEEEEecCCCcEEEEEcCCC-----ceEEEEee---cccCEEEEE
Q 005254 527 VSVVTFRG-------HKRGIWSVEFSPVD------QVVITASGDKTIKIWSISDG-----SCLKTFEG---HTSSVLRAS 585 (706)
Q Consensus 527 ~~~~~~~~-------~~~~v~~~~~s~~~------~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~---~~~~i~~~~ 585 (706)
. +..+.. -...|..+.|.+.. ..|++-..+|.++=|-+..+ +....+.. +...|.++.
T Consensus 76 ~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 E-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred e-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 3 333332 22456677775532 24666677888887776432 22333332 356899999
Q ss_pred EEeCCCEEEEEeCC-C----------CEEEEECCCCeEEEE---------------------e--------ccCCCcEEE
Q 005254 586 FLTRGAQIVSCGAD-G----------LVKLWTVRTGECIAT---------------------Y--------DKHEDKIWA 625 (706)
Q Consensus 586 ~s~~~~~l~~~~~d-g----------~i~iwd~~~~~~~~~---------------------~--------~~~~~~v~~ 625 (706)
++|.-+.|++|+.. . -+.-|.+-++.+-.. + ....+.|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 99998888776642 1 256676643221110 0 013567899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 626 LAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 626 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
|..||||..||+...+|.|.+|++..-...
T Consensus 235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred EEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 999999999999999999999999876544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-06 Score=68.96 Aligned_cols=148 Identities=16% Similarity=0.048 Sum_probs=100.9
Q ss_pred EccCC-CEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCc
Q 005254 68 LSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146 (706)
Q Consensus 68 ~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~ 146 (706)
..+|. .+++.|+..+.+.--|.++|..+.+-. -...|.+-+.- -|.+++.|+..|.+++.+..+|++...+.....-
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 33444 456677888889999999998876543 22333332222 4678999999999999999999888777643322
Q ss_pred EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
-......+++. ++..|+.|++.+..|..+..++...+-..+-..+-+..|....|+.+...|.+.--..++
T Consensus 96 k~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 96 KVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred ccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 22233445555 499999999999999999999888765555555556666444566666667665554443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-06 Score=73.58 Aligned_cols=174 Identities=19% Similarity=0.177 Sum_probs=111.7
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCCeEEEEeeccCC-------
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGHDG------- 103 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~------- 103 (706)
.++++|..+++.+..+... -.-.+.+|||++.+++++ ..-.|.+||.++..+...+.-..+
T Consensus 18 rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 7999999999988877653 233477899999998763 234799999999988876543221
Q ss_pred CeEEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCee
Q 005254 104 PAIGMACHPSGGLLATA--GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKC 180 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~ 180 (706)
....+++|.|++++++. +-..+|.|-|+..++.+..+. -.+...- -|.++. -+.+-+.||.+.-..+. .|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~PGC~~i---yP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-TPGCWLI---YPSGNR-GFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-GTSEEEE---EEEETT-EEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-CCCEEEE---EecCCC-ceEEEecCCceEEEEECCCCCE
Confidence 12346889999998885 455789999999999888776 2232222 232222 17788999999988887 4554
Q ss_pred EEEe----ecccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 181 VATL----DKHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 181 ~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.... .....+ +..-++...+..++-.+.+|.|+--|+....
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 4221 111111 2233344455556666778877777765443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-08 Score=89.82 Aligned_cols=281 Identities=16% Similarity=0.090 Sum_probs=186.9
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC-CCcEEEEeC
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK-DNSVRLWDS 428 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~ 428 (706)
...|..+.. ...+++..++.||.+..|....- +.+..+..|...+.++. . .-+.+++.+.+. |..++++|+
T Consensus 9 rd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~--~-S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 9 RDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLA--V-SYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhh--c-cccceeEeeccCcccceeEEEe
Confidence 334444333 36678999999999999987652 33445566777777774 3 445555888777 999999998
Q ss_pred CCceEEEEEeCCCcCeEEEEEecCC-C--eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ESRCCVGVGTGHMGAVGAVAFSKKL-Q--NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
++-..+..++...-+=.+-.+...| . .+.++...++.+.++|-.... .+......-|..+|.++.+.+-
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~--------~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF--------CQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc--------CccceecccccCceEEEEeecc
Confidence 8765543322211111111111122 1 133344567888998865432 1123344558899999999999
Q ss_pred CCEEEEeeCCCcEEEEeCCC------ccE---------EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 506 DSLVCTGSQDRTACVWRLPD------LVS---------VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~~------~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
+...++....|.|.-|.... .+. +..+.......+++.|+|++..+.+-+.|..|++++.++++.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 99999999999999998763 111 111222455678999999999999999999999999999877
Q ss_pred EEEEee--------------------------------cc-cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 571 LKTFEG--------------------------------HT-SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 571 ~~~~~~--------------------------------~~-~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
++.+.. |. ..-+.+.|...|++|+.++-=| |++.++.++++++.+-
T Consensus 236 vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 236 VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 665541 11 2345678888999999988766 8999999998877652
Q ss_pred c------------------CCCc-------EEEEEEcCCCCEEEEEeCCCcEEEE
Q 005254 618 K------------------HEDK-------IWALAVGKKTEMFATGGSDALVNLW 647 (706)
Q Consensus 618 ~------------------~~~~-------v~~~~~s~~~~~l~~~~~dg~i~vw 647 (706)
. +... =..+.+-+|..+++++-....++++
T Consensus 315 k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 315 KDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred cchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 1 0000 0112355677777777777778877
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-06 Score=74.91 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=102.9
Q ss_pred EEEEEcc-CCCEEEEEeccC-eEEEEECCCCeEEEEeeccCCCe--EEEEECCCCCEEEEec-----CCCcEEEEECC-C
Q 005254 64 TALALSP-DDKLLFSSGHSR-EIRVWDLSTLKCLRSWKGHDGPA--IGMACHPSGGLLATAG-----ADRKVLVWDVD-G 133 (706)
Q Consensus 64 ~~l~~s~-~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~-----~d~~i~vw~~~-~ 133 (706)
..++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-+||+||++|++.- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 4678889 455666666544 47899999999888776543332 2478999999999863 35889999998 6
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec----------------CCeEEEEECCCCeeEEE--e--ecccceEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD----------------DATVRVWDLLAKKCVAT--L--DKHFSRVTS 193 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~--~--~~~~~~v~~ 193 (706)
-+.+..+..|.-....+.+.||++..+++-|+- +..+.+-|..+|+.+.. + ..|.-.+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 778888888888888999999987745544431 23355556677776665 3 236667888
Q ss_pred EEEecCCCEEEEEeCC
Q 005254 194 MAITSDGSTLISAGRD 209 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~d 209 (706)
+++.++|..++..-..
T Consensus 168 La~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQ 183 (305)
T ss_pred EEecCCCcEEEEEecC
Confidence 8888777655444333
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7e-09 Score=86.00 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=107.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EEEEeeccCCCeEEEEECCCCCEEEEec-----CCCcEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAG-----ADRKVL 127 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i~ 127 (706)
+.+.-|+++-.+-+.+-.+..+++++.||.+.+.+.+.-. ..+.+..-...-.+.+.-..+..+.+++ .-+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 4444455544444555567789999999999999986521 1111111111111222333444554432 123456
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE-EEeecccceEEEEEEec-CCCEEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-ATLDKHFSRVTSMAITS-DGSTLIS 205 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~ 205 (706)
.|+++-.+.+..-+.....|.+++-+|. +.+++++|+.||.+-+||.+..... ..+..|..+++.+.|+| ++..|++
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eecccccccccccccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 6666544333222223344999999997 5568899999999999999887533 34578999999999998 5678999
Q ss_pred EeCCCEEEEEeCCC
Q 005254 206 AGRDKVVNLWDLRD 219 (706)
Q Consensus 206 ~~~dg~i~~w~~~~ 219 (706)
+++||.+..||..+
T Consensus 242 ~sedGslw~wdas~ 255 (319)
T KOG4714|consen 242 CSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCcEEEEcCCC
Confidence 99999999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.4e-06 Score=72.88 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=152.7
Q ss_pred ceEEcCCCCEEEEeeC-----------CeEEEEEccCCeEEEeecCCC---c----cEEEEEEccCCCEEEEE--eccCe
Q 005254 24 PLVVSSDGSFIACACG-----------ESINIVDLSNASIKSTIEGGS---D----TITALALSPDDKLLFSS--GHSRE 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-----------~~i~i~d~~~~~~~~~l~~~~---~----~i~~l~~s~~~~~l~s~--~~d~~ 83 (706)
.+++||||+.++++.- +.|.+||.++......+.-.. . ....+++|.||+++.+. +....
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 5889999999998642 259999999998776443222 1 22457899999998876 45668
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC-CCeEEEE----eeCCCCcE-EEEEEcCCCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-GGFCTHY----FKGHKGVV-SSILFHPDTD 157 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-~~~~~~~----~~~~~~~v-~~~~~~~~~~ 157 (706)
|.|-|++.++.+.++... +...-.-.. ...+.+.|.||.+.-..++ .|+.... |.....++ ..-++...+.
T Consensus 120 VtVVDl~~~kvv~ei~~P-GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP-GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGT-SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCC-CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 999999999999888743 322222222 2457777889999999887 5654422 11122222 2333444434
Q ss_pred ceEEEEEecCCeEEEEECCCCeeE--EEeec----------ccceEEEEEEecCCCEEEEEeC--------C--CEEEEE
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKCV--ATLDK----------HFSRVTSMAITSDGSTLISAGR--------D--KVVNLW 215 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~l~~~~~--------d--g~i~~w 215 (706)
. ++--+.+|.|+--|+...... ..+.. -.+.-.-+++++..++|++.-. + ..|-++
T Consensus 197 ~--~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 197 R--LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp E--EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred e--EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 4 555778888888887655422 11110 1233445788877666665421 1 268888
Q ss_pred eCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEE-EecCCCeEEEEECCCCeEEee
Q 005254 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI-TVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|+.+++.+..++....+.++..+.+..+ .++ ....++.+.+||..+++....
T Consensus 275 D~~t~krv~Ri~l~~~~~Si~Vsqd~~P----------------------~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 275 DLKTHKRVARIPLEHPIDSIAVSQDDKP----------------------LLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp ETTTTEEEEEEEEEEEESEEEEESSSS-----------------------EEEEEETTTTEEEEEETTT--EEEE
T ss_pred ECCCCeEEEEEeCCCccceEEEccCCCc----------------------EEEEEcCCCCeEEEEeCcCCcEEee
Confidence 9999999999999888888888776653 454 446789999999999866543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.6e-07 Score=88.33 Aligned_cols=215 Identities=16% Similarity=0.203 Sum_probs=142.0
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCCc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~ 480 (706)
+.+.+.. ++.|+.+|.|.+++-. -+.+..++.+...+...-+.-+++++|++.+.|+ .+++|+++.......
T Consensus 31 ~~s~~~~-vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s- 107 (933)
T KOG2114|consen 31 CSSSTGS-VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS- 107 (933)
T ss_pred EcCCCce-EEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC-
Confidence 4566666 9999999999888743 3333556666665333334445556888877664 489999987642221
Q ss_pred ccccceeEEE----eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC----CccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 481 PMNLKAKAVV----AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 481 ~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
+.-....... .....++.+++++.+-+.+|+|..+|.|..+.-. .+....-......+|+.+++..+++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 1111001111 1246778999999999999999999999988532 1222222233567899999999988744
Q ss_pred EecCCCcEEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-cCCCcEE
Q 005254 553 TASGDKTIKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-KHEDKIW 624 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~ 624 (706)
.+.....|.+|.+....+ ...+..|..+..|..|++....+++++. ..+.+|+.....+-..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 444455699999974442 4557778888999999876654666554 569999988766666666 6655443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.7e-06 Score=81.29 Aligned_cols=182 Identities=14% Similarity=0.039 Sum_probs=111.0
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC---C-CeEEEEEecCCCCCCCcccc
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---D-HTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d-~~i~i~~~~~~~~~~~~~~~ 483 (706)
++++.+..+.-..+.+.+.|.++.+....+.-. +....++++++++ ++++.+. . +++...+.... .
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk-~afvTsyNsE~G~tl~em~a~e~--d------ 271 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGK-YAFSTCYNSEEGVTLAEMMAAER--D------ 271 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCC-EEEEeccCcccCcceeeeccccC--c------
Confidence 344443333334456677787776666554432 2446678888888 4444432 1 22222221110 0
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC----c-cEEEEEeecCCcEEEEEEccCCCEEEEecC-C
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD----L-VSVVTFRGHKRGIWSVEFSPVDQVVITASG-D 557 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d 557 (706)
....+. -..+ -++.++|++...+ ++.|.+.|..+ + +.+..+. -......+.++|||+++++++. +
T Consensus 272 --~~vvfn--i~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 272 --WVVVFN--IARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred --eEEEEc--hHHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 000000 0000 1334578877763 67899999988 3 4444444 5566788999999999877654 8
Q ss_pred CcEEEEEcCCCce------------EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISDGSC------------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.++.|.|+.+.+. ..+..- .......+|.++|....+..-|..|..||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999987552 333332 23445689999998888888999999999976
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=81.12 Aligned_cols=78 Identities=18% Similarity=0.425 Sum_probs=61.3
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-----EEEEeeCCC------------CcEEEEEEcCCCCceEEEE
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-----CTHYFKGHK------------GVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~ 163 (706)
....|+++.|...|.||++|...|.|.++.-+... ....+++|. ..|..+.|..++...-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34678999999999999999988999999875433 223345554 3578899988887777888
Q ss_pred EecCCeEEEEECCCC
Q 005254 164 GSDDATVRVWDLLAK 178 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~ 178 (706)
.+.|.+|++|.+...
T Consensus 105 stNdktiKlWKiyek 119 (460)
T COG5170 105 STNDKTIKLWKIYEK 119 (460)
T ss_pred ecCCceeeeeeeecc
Confidence 889999999988654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=61.26 Aligned_cols=39 Identities=38% Similarity=0.627 Sum_probs=36.9
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd 88 (706)
+++++.+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=88.42 Aligned_cols=150 Identities=20% Similarity=0.350 Sum_probs=121.8
Q ss_pred EEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC-----eEEEEeeccCCCeEEEE
Q 005254 35 ACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-----KCLRSWKGHDGPAIGMA 109 (706)
Q Consensus 35 ~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~ 109 (706)
++|....+.+-|+.+|.... +. ..+.|.++.|...+.++..|..+|.|...|+..+ .+...+- |...|+++.
T Consensus 229 s~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred cccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 34444479999999987654 33 5678999999999999999999999999999764 3445555 889999998
Q ss_pred ECC-CCCEEEEecCCCcEEEEECCCCeE---EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee
Q 005254 110 CHP-SGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 110 ~s~-~~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 185 (706)
.-. ++++|.+.+.+|.|++||..--++ +..+.+|-..-.-+-++-+.....+++++.|...+||.+..+..+.+++
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 877 788999999999999999976555 8888888777666666655566679999999999999999999988875
Q ss_pred cc
Q 005254 186 KH 187 (706)
Q Consensus 186 ~~ 187 (706)
..
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=60.53 Aligned_cols=39 Identities=28% Similarity=0.679 Sum_probs=37.2
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
|+++..+++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-07 Score=80.54 Aligned_cols=260 Identities=12% Similarity=0.097 Sum_probs=160.3
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFL 457 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 457 (706)
++..+..+.+....+..+...|..++ ++|..+-++..++.+..|.+.|+++...+..+..+ ..+.+++|.-+..+++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~Irdla--fSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLA--FSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhc--cCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 67777777777778888899999998 88888877899999999999999999999888877 8999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE------EEcCCCCEEEEeeCCCcEEEEeCCC--ccEE
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL------AVAPNDSLVCTGSQDRTACVWRLPD--LVSV 529 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~~dg~i~i~d~~~--~~~~ 529 (706)
.+|..+|.|.+||++..+........ .-...+|..+ ...+.|.+|+....+ +..|++.- +...
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a-------~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVA-------NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP 322 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhh-------hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC
Confidence 99999999999999876432211111 0011122222 334455566665544 45555432 2222
Q ss_pred EEEee-cCCcEEEEEEccCCCEEEEecCC-C------cEEE-EEcCCCceEEEEe-ec-cc------CEEEEEEEeCCCE
Q 005254 530 VTFRG-HKRGIWSVEFSPVDQVVITASGD-K------TIKI-WSISDGSCLKTFE-GH-TS------SVLRASFLTRGAQ 592 (706)
Q Consensus 530 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-g------~i~i-wd~~~~~~~~~~~-~~-~~------~i~~~~~s~~~~~ 592 (706)
..++- ..+...+++..+..+.++..... . .|-. -|-.+|..+..-+ ++ .+ .-..+.-.++.++
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccE
Confidence 21221 24455666666644444433221 0 0111 1112232221111 11 00 0111222345566
Q ss_pred EEE-EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-C-CCEEEEEeCCCcEEEEECCc
Q 005254 593 IVS-CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-K-TEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 593 l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~vw~~~~ 651 (706)
++. ++..+.+.+||+.+.+.++.+.. ..+|..+.... + +.+|++-. |..+.||+.+.
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred EEEecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 544 44557899999999999998865 37787776533 2 33666544 66789988654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.2e-07 Score=86.89 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=88.8
Q ss_pred ceEEcCCCCEEEEee-----CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACAC-----GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-----~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
-..|+|...++|+++ ++.+.||- .+|++.+... -+-.+++++|+|..-.||.|-.-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 356888888888875 34788885 6777654433 2234577999999999999999999999999888877777
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..|..+|..+.||++|..|+++..-|.+.+|..+
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 8899999999999999999999999999999886
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=93.17 Aligned_cols=179 Identities=21% Similarity=0.282 Sum_probs=136.4
Q ss_pred EEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECC
Q 005254 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112 (706)
Q Consensus 33 ~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 112 (706)
++..+-.+.+..+|+.+.+..+...-....|+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--
Confidence 33334445799999999887776655444555444 45899999999999999999999999999999999986655
Q ss_pred CCCEEEEecC---------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC---CCC-e
Q 005254 113 SGGLLATAGA---------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL---LAK-K 179 (706)
Q Consensus 113 ~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~---~~~-~ 179 (706)
.|++|+++|. |..|+|||++..+.+.-+.-+.++ .-+.|+|.-. ..++..+..|...+-|. .+. .
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-ceEEEEecccceeeccccccCCCcc
Confidence 5888999873 677999999988877666655444 6678888632 34788888999999883 222 1
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.+..+......+..+++++++..++.+..+|.|.+|.-
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22233334456999999999999999999999999983
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=88.59 Aligned_cols=212 Identities=17% Similarity=0.098 Sum_probs=149.9
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTA 518 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i 518 (706)
|...|+.+..+.. .++.+++.||.++.|.-.... -......+..|-..|.+++.+-++.++.+.+. |..+
T Consensus 8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is-------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS-------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSV 78 (558)
T ss_pred ccceeeeEeeehh--heEEeeecchhhhhcCCCCcc-------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccce
Confidence 5666777666554 389999999999999754321 11133445667888999999999999999777 9999
Q ss_pred EEEeCCCccEEEEEee--cCCcEEEEEEccCC---CEEEEecCCCcEEEEEcCCCc--eEEEEeecccCEEEEEEEeCCC
Q 005254 519 CVWRLPDLVSVVTFRG--HKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
+++|+.+...+.-++. -.+.+. ...++.. ..-++...++.+.++|-.... ....-.-|..+|..+.+.+-+.
T Consensus 79 KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999987655433332 112221 1122211 223334568899999965443 2333334899999999999999
Q ss_pred EEEEEeCCCCEEEEECCC------CeEEEE---------eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 592 QIVSCGADGLVKLWTVRT------GECIAT---------YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..++....|.|.-|.... .+.... +........++.|+|++..+.+-+.|..|+++.+.+++..+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999998762 111111 12234567899999999999999999999999999999877
Q ss_pred HHHHH
Q 005254 657 EAFRK 661 (706)
Q Consensus 657 ~~~~~ 661 (706)
+...-
T Consensus 238 eiDE~ 242 (558)
T KOG0882|consen 238 EIDEV 242 (558)
T ss_pred hhhcc
Confidence 66543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=78.12 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=81.1
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++..+..+.+...-+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|.-+. .++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-RHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-cceeE
Confidence 66666666666667778889999999999877 7888899999999999999999888877 889999999885 67899
Q ss_pred EEecCCeEEEEECCCCe
Q 005254 163 SGSDDATVRVWDLLAKK 179 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~ 179 (706)
.|..+|.|.+||++..+
T Consensus 253 aGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPE 269 (463)
T ss_pred EeccCceEEEEEccCCC
Confidence 99999999999997654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=77.66 Aligned_cols=201 Identities=13% Similarity=0.083 Sum_probs=115.7
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccc--cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVT--ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
+..++++..++.+.......+.....-..+.. .......+.+.-..-..+-.+..++++..||.+.+++.........
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 34566666666666655544422211111111 0011112223333334455667788899999998887765221111
Q ss_pred eeEEeeEecccCceeeEeeEeCCCCcEEEEE-----ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEE
Q 005254 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVA-----TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVT 416 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 416 (706)
. .........+.++.. .++.+.++ -.-+..+.|++...+....-......+.++. ..|..+.++++
T Consensus 127 ~------i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~--~hp~qq~~v~c 197 (319)
T KOG4714|consen 127 R------IPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC--SHPAQQHLVCC 197 (319)
T ss_pred h------cccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccccccccchhhh--CCcccccEEEE
Confidence 1 111111111122221 11222211 1124455666655443332222333466666 78888888999
Q ss_pred eeCCCcEEEEeCCCceEE-EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 417 GSKDNSVRLWDSESRCCV-GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
|+.||.+.+||.++.... ..+..|..++..+-|+|..+..|++++.||.+..||...
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999887433 346789999999999999888999999999999998653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-05 Score=76.85 Aligned_cols=231 Identities=12% Similarity=0.140 Sum_probs=131.1
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcce-----EEEeeeeeecCCCEEEEEee---------CCCcEEEEeCCCce
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI-----VLCLDTCALSSGKILIVTGS---------KDNSVRLWDSESRC 432 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~ 432 (706)
..+++++.++.++.+|.++++.+......... +.+- ..-.+.. ++.++ .+|.+..+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ss---P~v~~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGA---PTIVKKL-VIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCC---CEEECCE-EEEeccccccccCCCCcEEEEEECCCCc
Confidence 34555555666777777766666554432210 1110 0111233 33443 46789999999998
Q ss_pred EEEEEeCCCcC--------------------e-EEEEEecCCCeEEEEecCCC------------------eEEEEEecC
Q 005254 433 CVGVGTGHMGA--------------------V-GAVAFSKKLQNFLVSGSSDH------------------TIKVWSFDG 473 (706)
Q Consensus 433 ~~~~~~~~~~~--------------------v-~~~~~~~~~~~~l~~~~~d~------------------~i~i~~~~~ 473 (706)
.+-........ + ...++.+.+. .++.++.++ .+.-+|..+
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 88776542110 1 1233443333 566666554 577777766
Q ss_pred CCCCCCcccccceeEEEee--c--------Ccc-eEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 474 LSDDAEQPMNLKAKAVVAA--H--------GKD-INSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~--~--------~~~-i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
++ ....... + ..+ +..+. .-++. .+++++.+|.+..+|..+++.+.......
T Consensus 266 G~----------~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--- 331 (488)
T cd00216 266 GK----------VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--- 331 (488)
T ss_pred CC----------EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---
Confidence 54 1111110 1 000 01110 11333 67788899999999999999887765321
Q ss_pred EEEEEccCCCEEEEe------------------cCCCcEEEEEcCCCceEEEEeecc--------cCEEEEEEEeCCCEE
Q 005254 540 WSVEFSPVDQVVITA------------------SGDKTIKIWSISDGSCLKTFEGHT--------SSVLRASFLTRGAQI 593 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l 593 (706)
..++.+| ..++.+ ..+|.+.-.|+.+|+.+-+..... .+...-.....+..|
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 1233344 223322 246788889999998876665321 111111122356789
Q ss_pred EEEeCCCCEEEEECCCCeEEEEecc
Q 005254 594 VSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 594 ~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
+.++.||.|+.+|..+|+.+...+.
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEEC
Confidence 9999999999999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.8e-06 Score=78.21 Aligned_cols=291 Identities=16% Similarity=0.195 Sum_probs=167.5
Q ss_pred cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
.+.......+......+++++.|+..|.+++|+-..+.....-.+....+.+.. ..+....++|.|+..|.|.++-+.
T Consensus 29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEE--EecchhHhhhhhcCCceEEeehhh
Confidence 344445555555666889999999999999999888766544443333344333 344455559999999999999876
Q ss_pred CceEEE---E---EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 430 SRCCVG---V---GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 430 ~~~~~~---~---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.+..-. . -..|...|++++|++++. .+++|...|+|..-.++... ........+......|..+...
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~------~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQ------AFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhh------hhccccceeeccCcceEEeecc
Confidence 642211 1 123688999999999998 89999999999998887510 0111222333345566666665
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCC-cEEEEEEccC----CCEEEEecCCCcEEEEEcC-CCceEEEEe
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKR-GIWSVEFSPV----DQVVITASGDKTIKIWSIS-DGSCLKTFE 575 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~-~v~~~~~s~~----~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 575 (706)
++.+|++... . -.+++.+... .+..-. ..+ .-...+|-|. .+-.+.++.-| .|+|..+ .|+.+++..
T Consensus 180 -q~~LLVStl~-r-~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq 254 (726)
T KOG3621|consen 180 -QSYLLVSTLT-R-CILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ 254 (726)
T ss_pred -cceehHhhhh-h-hheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence 3334443332 2 2334443222 111111 111 1223444442 23344444555 6788764 244444332
Q ss_pred e-------------ccc----------------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 576 G-------------HTS----------------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 576 ~-------------~~~----------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
- +.. ....+.+-.+ .++++-++-| |+|+|..+.+.+.-..+ ...|..+
T Consensus 255 fk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-iyv~d~~~~~v~l~se~-~~DI~dV 331 (726)
T KOG3621|consen 255 FKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-IYVFDSNNSQVYLWSEG-GHDILDV 331 (726)
T ss_pred hhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-EEEEEeccceEEEeecC-CCceeEE
Confidence 0 000 0111112222 2455555555 99999888776655433 3345555
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+. +++-|+.--.||.+++..+.+........
T Consensus 332 s~--~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 332 SH--CGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred ee--cCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 54 56667777778888888888776655444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.6e-05 Score=75.24 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=113.3
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCc------cEE--EEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD------TIT--ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~------~i~--~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
++.+++...++.++-+|..+|+.+-..+.... .+. .+++. ++..++.++.++.|.-+|.++|+.+.++...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 55555544456899999999988755543221 110 11111 2267778888999999999999999887643
Q ss_pred CCC--eEEEEECC--CCCEEEEec---------CCCcEEEEECCCCeEEEEeeCCCCc--------------------E-
Q 005254 102 DGP--AIGMACHP--SGGLLATAG---------ADRKVLVWDVDGGFCTHYFKGHKGV--------------------V- 147 (706)
Q Consensus 102 ~~~--v~~~~~s~--~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~--------------------v- 147 (706)
... -..+.-+| .+..+++++ .++.+...|.++|+.+..+...... +
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 321 01111122 124455553 3678999999999988776542110 1
Q ss_pred EEEEEcCCCCceEEEEEecCC------------------eEEEEECCCCeeEEEeecccceEE------EEEEe----cC
Q 005254 148 SSILFHPDTDKSLLFSGSDDA------------------TVRVWDLLAKKCVATLDKHFSRVT------SMAIT----SD 199 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~v~------~~~~~----~~ 199 (706)
...++.+.+.. ++.++.++ .|.-.|..+|+.+...+.-..... ...+. -+
T Consensus 220 ~~pa~d~~~g~--V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 220 ASPTYDPKTNL--VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred CCeeEeCCCCE--EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 11233333333 66666554 788999999998877642111110 00111 12
Q ss_pred CC---EEEEEeCCCEEEEEeCCCCcceeee
Q 005254 200 GS---TLISAGRDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 200 ~~---~l~~~~~dg~i~~w~~~~~~~~~~~ 226 (706)
+. .++.++.+|.+...|.++++.+...
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 32 4666777888888888877766543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=90.58 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=133.3
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.++.|+--..+..+|++..+ ......-....++- +..+++++.+|...|+|.+-|.++.+.+.++..|
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~----------e~r~~~v~a~~v~i--mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEK----------ETRTTNVSASGVTI--MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred ceeecchhhheeeeecccce----------eeeeeeccCCceEE--EEecCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 56677766778888887653 11111112222333 3457889999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecC---------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeC-CCEEEEEeCCCCEEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASG---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR-GAQIVSCGADGLVKLW 605 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw 605 (706)
.+.|.++.. .|+.|++++. |..|+|||++..+.+.-+..+.++ .-+.|.|. -..+++++..|...+-
T Consensus 217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 999976655 5899999876 556899999988877766655554 45677774 3478888899999999
Q ss_pred E---CCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 606 T---VRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 606 d---~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
| +.+. .-+..+..-...+.++.+|+++..|+.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8 3333 22333444456699999999999999999999999998
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-05 Score=72.98 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=50.7
Q ss_pred ccCCCEEEEE---------eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 69 SPDDKLLFSS---------GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 69 s~~~~~l~s~---------~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
|||+++++.. +..+.+.|+|+++++....... ...+....|||+|+++|... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 6889888774 2356899999999876655443 67888999999999999986 578999998777433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0007 Score=68.75 Aligned_cols=433 Identities=12% Similarity=0.105 Sum_probs=217.0
Q ss_pred CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC--C-
Q 005254 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS--G- 114 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~- 114 (706)
.+.|++++-. ..+.... ....++.-+.+.+...++.++.++.+...++..+.+...- +.-...|.|+.++|- +
T Consensus 469 s~~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 469 SNSIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cccEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCC
Confidence 3446666643 2223333 2455666666777767777777777877787766622221 123578999999984 2
Q ss_pred ---CEEEEecCCCcEEEE-ECCCCeEEEEee-C---CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC--CCeeEEEe
Q 005254 115 ---GLLATAGADRKVLVW-DVDGGFCTHYFK-G---HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVATL 184 (706)
Q Consensus 115 ---~~l~~~~~d~~i~vw-~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~ 184 (706)
+++|+|..+..+.+- -..+...+.... + -...|.-.+|-.| ..+|.++..||.+.-+-+. ++..-..-
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d--~~yLlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD--IHYLLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc--ceEEEEEcCCceEEEEEEEcccceEcccc
Confidence 267777655544333 333333333221 1 1223444444433 5569999999998877554 44322111
Q ss_pred --ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 --DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.-...++.--.|+..++.-+.+..|.-..+|..+..-....+...+ +..++...+...
T Consensus 624 k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-v~~~c~f~s~a~------------------- 683 (1096)
T KOG1897|consen 624 KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-VNHMCPFNSDAY------------------- 683 (1096)
T ss_pred ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-hhhhcccccccC-------------------
Confidence 1123466666777766655555566666666544322222222111 111221111110
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC-----------ceEEE
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ-----------QLLLY 331 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~ 331 (706)
...+.....+.+++..++.-.-..... -.-......+++.+....+.+.+... .+...
T Consensus 684 --~d~l~~~~~~~l~i~tid~iqkl~irt---------vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l 752 (1096)
T KOG1897|consen 684 --PDSLASANGGALTIGTIDEIQKLHIRT---------VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL 752 (1096)
T ss_pred --CceEEEecCCceEEEEecchhhcceee---------ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence 012333334445554443321000000 00011122222222111111111111 11111
Q ss_pred EeeeccccceeeEEeeEec--ccCceeeEeeEeCCCCcEEEEEec----------CCcEEEEeCCCceeeEeeeCC--cc
Q 005254 332 TTVEVPEKKMELILSKRLV--GYNEEILDLKFLGEEEQYLAVATN----------IEQVQVYDLSSMSCSYVLAGH--SE 397 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~--~~ 397 (706)
..-+. ...+......+. .....+.++.|..+.+.++++|+. .|.|.++.......+.....+ .+
T Consensus 753 ~vlD~--nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 753 RVLDQ--NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEecC--CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 11000 000111111111 112234455577766788888764 467777777664433333332 22
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
.+.++. .-++ . +.++-...|++|++.+++.++.-..+..++..+...-.+. .+++|.--+++.+......+..
T Consensus 831 av~aL~---~fng-k--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~ 903 (1096)
T KOG1897|consen 831 AVYALV---EFNG-K--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGN 903 (1096)
T ss_pred ceeehh---hhCC-e--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCc
Confidence 333331 1223 3 2334567899999999988888888889999998888876 7888988888888777654311
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
. ......-+...++++.+-.+.. .+.+..+|.+.+....
T Consensus 904 f-------~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 904 F-------EEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKD 942 (1096)
T ss_pred e-------EEeehhhCccceeeEEEecCce-EEeecccccEEEEEec
Confidence 1 1112233556677777765544 4445567777776543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-05 Score=76.13 Aligned_cols=193 Identities=16% Similarity=0.134 Sum_probs=127.1
Q ss_pred eeeeecc--ceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----CeEEEEE
Q 005254 17 QQFYGGG--PLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----REIRVWD 88 (706)
Q Consensus 17 ~~~~~~~--~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~~i~iwd 88 (706)
..++.++ .+=++|||+.+...+.- .+.+.|..+.+....+.-.. .-..++++|+|+++++.+.+ .++..-+
T Consensus 188 ~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~ 266 (635)
T PRK02888 188 GYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMM 266 (635)
T ss_pred cEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeec
Confidence 3344444 66788999887655432 58888999988776665433 44778999999999887532 2233332
Q ss_pred CCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC----C-eEEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 89 LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG----G-FCTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
..+...+..+.... + -++.++|++...+ ++.|.+.|..+ + +.+..+. -......+.++|||++ ++++
T Consensus 267 a~e~d~~vvfni~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVa 338 (635)
T PRK02888 267 AAERDWVVVFNIAR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIAN 338 (635)
T ss_pred cccCceEEEEchHH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEe
Confidence 22222221111100 0 1334578877763 57899999988 3 4444444 5667789999999876 5556
Q ss_pred EecCCeEEEEECCCCee------------EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 164 GSDDATVRVWDLLAKKC------------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
+..+.+|.|.|+.+.+. .....--. .....+|.++|....+.--|..|..|++..
T Consensus 339 nklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 339 GKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 66799999999987553 33333222 334568999998888888899999999876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-06 Score=80.56 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=121.1
Q ss_pred EEcCCCCEEEEeeCC-eEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE-----EEEe
Q 005254 26 VVSSDGSFIACACGE-SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRSW 98 (706)
Q Consensus 26 ~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~ 98 (706)
+++..+++++.|... .+++|+-.+++.+. ...+....+..+.+|++..++|.|+..|.|.++-+..+.+ +...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 466788999998875 89999977776543 3334556777888999999999999999999998876421 1222
Q ss_pred -eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 99 -KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 99 -~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
+.|...|++++|++|+..+.+|...|.|..-.+++. -..+.+..-.++|..+.... ..+|++.... -.+.
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q---~~LLVStl~r--~~Lc 194 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ---SYLLVSTLTR--CILC 194 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc---ceehHhhhhh--hhee
Confidence 237889999999999999999999999999888872 11122333556777776653 3334443332 2344
Q ss_pred ECCCCeeEEEeecccce--EEEEEEecC----CCEEEEEeCCCEEEEEeCCC-Ccceeee
Q 005254 174 DLLAKKCVATLDKHFSR--VTSMAITSD----GSTLISAGRDKVVNLWDLRD-YSCKLTV 226 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~--v~~~~~~~~----~~~l~~~~~dg~i~~w~~~~-~~~~~~~ 226 (706)
+.+.++..+.-+..... -...+|-|. .+-.+.++.-| .++|..+- |+..++.
T Consensus 195 ~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Th 253 (726)
T KOG3621|consen 195 QTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTH 253 (726)
T ss_pred ecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEee
Confidence 44433321111111111 233445443 23344444555 78887653 3333333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.7e-06 Score=80.71 Aligned_cols=202 Identities=16% Similarity=0.282 Sum_probs=141.0
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCcc-EEEEEEccCCCEEEEEeccC-----eEEEEECCCC---
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDT-ITALALSPDDKLLFSSGHSR-----EIRVWDLSTL--- 92 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~-i~~l~~s~~~~~l~s~~~d~-----~i~iwd~~~~--- 92 (706)
..-++++.+..++.|... .|.+++ .+-+.++.++.+... |+.+-...+..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 455688889899988875 777776 344555778877777 55555555557888876654 5999999632
Q ss_pred ---eEE--EEeec-----cCCCeEEEEECCCCCEEEEecCCCcEEEEEC----CCCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 93 ---KCL--RSWKG-----HDGPAIGMACHPSGGLLATAGADRKVLVWDV----DGGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 93 ---~~~--~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
.++ +.+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.= +.|...........+|+.+++..++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 333 12222 3568899999999999999999999988853 223333333446789999999988776
Q ss_pred eEEEEEecCCeEEEEECCCCe-eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 159 SLLFSGSDDATVRVWDLLAKK-CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
. ++++.. ..|.+|.+.... ....+..|...+.|-.+++....+++++ +..+.+|+.+.......++.
T Consensus 186 ~-lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 186 V-LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred e-EEEEec-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecC
Confidence 3 333333 459999987444 2445777888999999987766566665 45699999987766666653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=85.00 Aligned_cols=181 Identities=15% Similarity=0.169 Sum_probs=130.4
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
..+++++++.. +++-|+.+|.+++++.+.. . .....|... ..+|.++++|+.||+|.|.
T Consensus 40 D~is~~av~~~---~~~~GtH~g~v~~~~~~~~-----------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVHDK---FFALGTHRGAVYLTTCQGN-----------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhhcc---eeeeccccceEEEEecCCc-----------c-ccccccccc------ccCCceEEEecCCCcEEEe
Confidence 45556666654 8999999999999998754 1 111222221 5689999999999999999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccC-----CCEEEEecCCCcEEEEEcCCC-ce-EEEEeecccCEEEEEEEeCCCEEE
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPV-----DQVVITASGDKTIKIWSISDG-SC-LKTFEGHTSSVLRASFLTRGAQIV 594 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l~ 594 (706)
.+-+.+...++. ...++.+++++|+ .+.+++|+.-| +.++.-+-. .. -..+....++|.++.| .|+++|
T Consensus 99 sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 99 SLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEE
Confidence 998888777666 5678999999998 56899999988 777763211 11 1134445678998888 467888
Q ss_pred EEeCCCCEEEEECCCCeEEEEeccCCCcE------EEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 595 SCGADGLVKLWTVRTGECIATYDKHEDKI------WALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 595 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
-++.+| |+|||+.+++.+..++.....+ ..+.|.++.++++ |...+|+|..+.
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 888777 9999999999888887443333 3577876665443 344568888887
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00032 Score=66.94 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=133.2
Q ss_pred CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC------
Q 005254 104 PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA------ 177 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------ 177 (706)
.|+.+.|+++..-|+++...|.|.+|.+...+... .....+-..+.|.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S----------GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc--------ccCCCcceEEehhhCCccc
Confidence 58899999999999999999999999987654322 0011111122221110 0011112222221
Q ss_pred ---CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc---------eeeeEEeeCCCCCcc
Q 005254 178 ---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE---------MVEAVCAIPPGSAFD 245 (706)
Q Consensus 178 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 245 (706)
..+...++...++|++++.|.-| ++++|.++|.+.+.|++....+......+ .+..+.|
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF-------- 143 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF-------- 143 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE--------
T ss_pred ccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE--------
Confidence 12333445567999999998554 99999999999999998887766643333 0001110
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+.+.+.|+.- .-.+++++..
T Consensus 144 --------------------~vm~~~~D~yS---------------------------------------Si~L~vGTn~ 164 (395)
T PF08596_consen 144 --------------------SVMTLGGDGYS---------------------------------------SICLLVGTNS 164 (395)
T ss_dssp --------------------EEEE-TTSSSE---------------------------------------EEEEEEEETT
T ss_pred --------------------EEEecCCCccc---------------------------------------ceEEEEEeCC
Confidence 01111111110 0235667777
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC--------------------CcEEEEEecCCcEEEEeCCC
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE--------------------EQYLAVATNIEQVQVYDLSS 385 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~~l~~~~~~~~i~~~d~~~ 385 (706)
|.+..|.+..................+.+++..+.....+ ..-+++...+..++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 7777777765444444444444444455555555543211 12345555568999999988
Q ss_pred ceeeEeeeCCcceEEEeeeeee----cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC----cCeEEEEEecCCC
Q 005254 386 MSCSYVLAGHSEIVLCLDTCAL----SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQ 454 (706)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~ 454 (706)
.+...... ..+..+-..++. ......|++-..+|.++++.+..-+.+....... ..+....++++|+
T Consensus 245 ~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 245 SKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp --EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred Ccccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 77665554 222332222232 2344558888899999999999988887766432 2344566777777
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-05 Score=77.01 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=137.4
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....|.++.|.. +...++++...|.|.+.|.++.... ....-...|.++. ++|+.+. ++..+..+++.+... +.
T Consensus 67 gd~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aas--wS~Dee~-l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLA-DTNSICVITALGDIILVDPETLELE-IVGNVDNGISAAS--WSPDEEL-LALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CCcceEEEEEec-ccceEEEEecCCcEEEEccccccee-eeeeccCceEEEe--ecCCCcE-EEEEeCCcEEEEEec-cc
Confidence 346888999987 4556666777788888887776543 3334455677776 8888887 666666666655432 22
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc-cccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
.++...+.+ ..-.+.+ -.+.++....=.-+.-..+.....++ ...+..... .....=+++.|--||+++|
T Consensus 141 ~~i~E~~L~------~d~~~~s--k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 141 EPIAEKPLD------ADDERKS--KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred cchhccccc------ccccccc--ccceecccccceeeecchhhhcccccccccccccch-hhccCCceEEEccCCcEEE
Confidence 222111110 0001111 13333333222222211111000000 000000000 1222336789999999999
Q ss_pred Ee-----eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec---CCCcEEEEEcCCCceEEE----Eeecc
Q 005254 511 TG-----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSCLKT----FEGHT 578 (706)
Q Consensus 511 ~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~----~~~~~ 578 (706)
+. ...+.|++||-+ +.+-..-....+.-.+++|-|.|..+++-. .|+.|.++.- +|-.... +....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccc
Confidence 83 223789999976 443333333334446799999999998753 4567999984 4433332 22233
Q ss_pred cCEEEEEEEeCCCEEEE---EeCCCCEEEEECCCCe
Q 005254 579 SSVLRASFLTRGAQIVS---CGADGLVKLWTVRTGE 611 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~ 611 (706)
.++..++|+.++..|++ ......|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 45899999999999988 4444569999887654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-08 Score=96.70 Aligned_cols=201 Identities=15% Similarity=0.268 Sum_probs=147.2
Q ss_pred eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-eEE
Q 005254 389 SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-TIK 467 (706)
Q Consensus 389 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~i~ 467 (706)
...+..+....+|++ |+...+. ++.|+-.|.|++++..+|........|.+.++.+.-+.+|...|.+.+... -..
T Consensus 1094 w~~frd~~~~fTc~a--fs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIA--FSGGTNH-LAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEE--eecCCce-EEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345667777888887 7777777 999999999999999999999999999999999999999986565555554 567
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE-ee---cCCcEEEEE
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF-RG---HKRGIWSVE 543 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~v~~~~ 543 (706)
+|++..... ....+ ..-.++.|+.....-+.|+......+||+.++.++.++ .+ .+..-.+..
T Consensus 1171 LW~~~s~~~---------~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred HhccccccC---------ccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 898865321 11212 12356788876656666776678999999998776652 22 223336788
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe
Q 005254 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 616 (706)
|+|+..+++ .|| .+||++..+.++.|.... .-..-.|+|.|..++.-+ .|||+++-+.+...
T Consensus 1238 FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1238 FSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred cCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 999988775 466 589999888887776433 222347999999888765 48999887665544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00026 Score=68.67 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=106.0
Q ss_pred eEEcCCCCEEEEeeCC------------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC
Q 005254 25 LVVSSDGSFIACACGE------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~------------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~ 92 (706)
+|.+|.|..+|...+. .|.||+. .|+.+..+.-..+.|.++.|+.+.+ |+....||.++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 5666666666666555 5999995 5666665544448999999998755 456668999999998633
Q ss_pred e------EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-EEEEee---CCCC------cEEE-EEEcCC
Q 005254 93 K------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF-CTHYFK---GHKG------VVSS-ILFHPD 155 (706)
Q Consensus 93 ~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~---~~~~------~v~~-~~~~~~ 155 (706)
. .+....-....+.+..+..+| ++....++.+.+-+--... ....+. .... .... ..++.+
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~ 189 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD 189 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC
Confidence 3 111111122333444555566 3333344554444322211 111111 1000 0000 122222
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.. ..+....++.+.+.+-...+. +. ..+++..|++||+|++++.-..+|.+.+.+.+-.+....+.
T Consensus 190 ~~--~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 190 RV--VEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cc--eEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 22 233334445555333222111 11 23689999999999999999999999888765554444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-05 Score=72.05 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=98.6
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
..+.++|+|+++++++++...||.....+....-. -...+|+++++ .|+-...+.|.|+.--+.+....++..
T Consensus 36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~-----g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~- 108 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS-----GLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP- 108 (443)
T ss_dssp SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE------SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-
T ss_pred eeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc-----eeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-
Confidence 36999999999999999999999865555444322 25678888655 566666888999643233332334322
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC----
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---- 178 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---- 178 (706)
..+..+-. |.+|+..+. +.|.+||+++++.+..+... +|..+.|+++++. ++..+.+ .+.+++....
T Consensus 109 ~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~--val~t~~-~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL--VALVTKD-SIYILKYNLEAVAA 179 (443)
T ss_dssp S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE--EEEE-S--SEEEEEE-HHHHHH
T ss_pred cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE--EEEEeCC-eEEEEEecchhccc
Confidence 23333333 887877765 47999999999999988743 3899999999875 5555554 5788765332
Q ss_pred -------eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 179 -------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 179 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
..+..+..-...|.+.+|..+ .++-.+.. +++.
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 133333332567888899876 33333333 6666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00019 Score=63.06 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=116.3
Q ss_pred ccceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-----
Q 005254 22 GGPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK----- 93 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~----- 93 (706)
.+.|++.||.+.|++..+. .|..++. +|+.++.+.-. .+..-.|++..++.++++--.++.+.+.++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~ 102 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR 102 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence 3579999998877777776 6888886 57777666433 3557899999888887776668999999883321
Q ss_pred -EEEEee-----ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CeEEEEe--------eCCCCcEEEEEEcCCC
Q 005254 94 -CLRSWK-----GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYF--------KGHKGVVSSILFHPDT 156 (706)
Q Consensus 94 -~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---~~~~~~~--------~~~~~~v~~~~~~~~~ 156 (706)
....+. .++..+-.++|+|.++.|+++-+..-..++.+.. ...+... ......+.+++++|..
T Consensus 103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence 112221 2556799999999988888887776677777654 2222111 1244568999999985
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc---------ceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
. .+++....+..|..+| .+|+.+..+.-.. ...-.++|.++|+ |+..++.+..+++
T Consensus 183 ~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 183 G-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp T-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred C-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 5 4566677888899999 5777665543221 3578999999985 6666677766655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00044 Score=60.83 Aligned_cols=208 Identities=9% Similarity=0.154 Sum_probs=121.0
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
.+.+-...+.+++ +.|+.+.++++....+.|..++.. |+.++.+... .+..-.+++..++. ++++.-.++.+.++
T Consensus 16 ~l~g~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 16 PLPGILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIF 91 (248)
T ss_dssp E-TT--S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEE
T ss_pred ECCCccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEE
Confidence 4556666788998 899999989999999999989974 7777776544 46788899988775 66666678999999
Q ss_pred EecCCCCCCCcccccceeE--EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC---ccEEEEE--e------ecC
Q 005254 470 SFDGLSDDAEQPMNLKAKA--VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD---LVSVVTF--R------GHK 536 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--~------~~~ 536 (706)
++.......... ...... ....++..+..++++|.++.|+++-+..-..+|.+.. ...+... . ...
T Consensus 92 ~~~~~~~~~~~~-~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 92 TIDDDTTSLDRA-DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EE----TT--EE-EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEeccccccchh-hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 996543221111 001111 1123556789999999888887777776667776653 2222111 1 123
Q ss_pred CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEeecc---------cCEEEEEEEeCCCEEEEEeCCCCEEEE
Q 005254 537 RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------SSVLRASFLTRGAQIVSCGADGLVKLW 605 (706)
Q Consensus 537 ~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~iw 605 (706)
..+.+++++|. +.+++.+..+..|..+| .+|+.+..+.-.. ...-.++|.++|+..+ .++-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 45788999985 45667777888899999 5787766554222 2467899999985544 4565655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-06 Score=79.80 Aligned_cols=176 Identities=14% Similarity=0.218 Sum_probs=126.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
|.++ .+++++.|... .+++++.+.. . .....|+.. ..+|.++++|+.||.|.|-.+-+.+...++. ..
T Consensus 44 ~~av--~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~ 112 (846)
T KOG2066|consen 44 CCAV--HDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FK 112 (846)
T ss_pred HHHh--hcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cC
Confidence 4444 46788888876 8999986544 3 334445444 6689999999999999999999998888777 45
Q ss_pred CCeEEEEECCC-----CCEEEEecCCCcEEEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 103 GPAIGMACHPS-----GGLLATAGADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 103 ~~v~~~~~s~~-----~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
.++.+++++|| .+.+++||..| +.++.-. ..+....+..-.++|.++.|.. + ++|-++.+| |++||.
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~--lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--N--LIAWANDDG-VKVYDT 186 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC--c--EEEEecCCC-cEEEec
Confidence 89999999998 56899998888 7776531 1121224556789999999964 3 477777777 999999
Q ss_pred CCCeeEEEeecccce------EEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 176 LAKKCVATLDKHFSR------VTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
.+++.+..++..... ...+.|.++. .|+.| -..+|++..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 999888776543332 2356777654 45555 34568887776
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00061 Score=70.78 Aligned_cols=284 Identities=14% Similarity=0.101 Sum_probs=153.2
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
....|.++.|..++.-+..+..+|.|.+-|.++..... ...-...|.+++||||+++++..+..+++.+-+ .+-.++.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 34689999999999999999999999999988765432 222468999999999999999998877766543 2222222
Q ss_pred EeeC-----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEe-----C
Q 005254 139 YFKG-----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG-----R 208 (706)
Q Consensus 139 ~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~ 208 (706)
...- ..+....+-|-.... =+.|+. |....-+.......-......+.=+.++|-.||+++++.. .
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeT---qfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKET---QFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred ccccccccccccccceecccccce---eeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 1110 112222233322111 111111 1111111111110000001122345688999999888832 2
Q ss_pred CCEEEEEeCCCCcc-eeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 209 DKVVNLWDLRDYSC-KLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 209 dg~i~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
...|++||-+ +.. ...-+.......+.+-|.|..+.. +-.-+.++.|.++...+-..-
T Consensus 221 ~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~--------------------iq~~~sd~~IvffErNGL~hg 279 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAA--------------------IQCKTSDSDIVFFERNGLRHG 279 (1265)
T ss_pred ceeEEEeccc-chhhcccCcccccccceeecCCCCeEee--------------------eeecCCCCcEEEEecCCcccc
Confidence 3799999987 322 222223334455666666653322 112233445666654432110
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEE---EeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC---VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
......+.....+..+++..++..|++ ......+.+|...... . ..+.......... +.|.|.
T Consensus 280 -------~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-----W-YLKq~l~~~~~~~-~~W~p~ 345 (1265)
T KOG1920|consen 280 -------EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-----W-YLKQELQFSQKAL-LMWDPV 345 (1265)
T ss_pred -------ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-----E-EEEEEEecccccc-ccccCC
Confidence 001111222223788999999999988 4445568888776431 1 1111111222222 666666
Q ss_pred CCcEEEEEecCCcEEEEeC
Q 005254 365 EEQYLAVATNIEQVQVYDL 383 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~ 383 (706)
....+.+...+|...+++.
T Consensus 346 ~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeEEEEecCCcEEEEEE
Confidence 6666666666666666654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-07 Score=92.60 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=133.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC--cEEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR--KVLVWD 130 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~ 130 (706)
.+.+..|....+|++||-+.+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.||..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 355667888999999999999999999999999999999999999999999999999999999888765433 467999
Q ss_pred CCC-CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ec---ccceEEEEEEecCCCEEEE
Q 005254 131 VDG-GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DK---HFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 131 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~ 205 (706)
..+ +...+.|. .-.++.|+..... -+.|.......+||++++..+.++ .+ ....-.+..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 854 44444443 3467888876544 445555566899999999877653 21 222347788999988766
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCC
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 242 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (706)
.|| .+||++..+.+..+........-.|.|.|.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGN 1279 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccCCCc
Confidence 356 689999887776665444334444555554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.001 Score=63.79 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=65.4
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
........+.+.+++|+...|+.|+.||.|.+||...+.-. +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34467788999999999999999999999999998766332 2234566789999999999999999999999998543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00028 Score=68.11 Aligned_cols=205 Identities=20% Similarity=0.253 Sum_probs=150.9
Q ss_pred cceEEcCCCCEEEEee--CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCeEEEE
Q 005254 23 GPLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLKCLRS 97 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~~~~~ 97 (706)
..+++++++..++... .+.|.+.|..+.+..+...-.. .-..++++|+++.+.++.. ++.+.+.|..+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3689999999777776 4589999988888777665443 5588999999988877654 68999999999998888
Q ss_pred eeccCCCeEEEEECCCCCEEEEec-CCCcEEEEECCCCeEEE-E---eeCCCCcEEEEEEcCCCCceEEEEEec-CCeEE
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVDGGFCTH-Y---FKGHKGVVSSILFHPDTDKSLLFSGSD-DATVR 171 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~ 171 (706)
...-..+ ..++++|+|+.+.+.. .++.|.+.|..+..... . ...-......+.+.|++...+++-... ++.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 6544445 8999999999776664 68899999977766553 1 112234457789999988644433332 36899
Q ss_pred EEECCCCeeEEE-eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCc
Q 005254 172 VWDLLAKKCVAT-LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 172 vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~ 229 (706)
..|..++..... ..........+.++|+|+.+++... .+.+.+.|..+..........
T Consensus 235 ~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 999988887765 2211115667889999999988854 488999998887776665443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0036 Score=63.90 Aligned_cols=464 Identities=12% Similarity=0.097 Sum_probs=237.2
Q ss_pred eEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCc---
Q 005254 83 EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDK--- 158 (706)
Q Consensus 83 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 158 (706)
.|++++-+ .++..+... +.++..+.+.+...++.++.++.+...++..+...... +.....|.|+.++|-++.
T Consensus 471 ~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 56776644 344455533 45555566666667777777777777777766522221 224678999999976432
Q ss_pred -eEEEEEecCCeEEEEEC-CCCeeEEEe--e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCC--cceeee--cC
Q 005254 159 -SLLFSGSDDATVRVWDL-LAKKCVATL--D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY--SCKLTV--PT 228 (706)
Q Consensus 159 -~~l~~~~~dg~i~vwd~-~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~--~~~~~~--~~ 228 (706)
.+++.|..+..+.+--. .....+... . .-...|.-.+|-.|..+|+++..||.+.-+.+... ...... ..
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l 627 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL 627 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc
Confidence 36788877666554432 223222211 1 12234555666667889999999999887765433 211111 11
Q ss_pred -cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccce
Q 005254 229 -YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 307 (706)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (706)
..++.--.+...+ ..++++.++.- ..+|.......+...+..... .
T Consensus 628 Gt~P~~Lr~f~sk~----------------------~t~vfa~sdrP-~viY~~n~kLv~spls~kev~----------~ 674 (1096)
T KOG1897|consen 628 GTQPISLRTFSSKS----------------------RTAVFALSDRP-TVIYSSNGKLVYSPLSLKEVN----------H 674 (1096)
T ss_pred CCCCcEEEEEeeCC----------------------ceEEEEeCCCC-EEEEecCCcEEEeccchHHhh----------h
Confidence 1111111111111 22344444333 333333333222211111110 0
Q ss_pred eEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecC------------
Q 005254 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI------------ 375 (706)
Q Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~------------ 375 (706)
.+..-++.....++....+.+.+..+.+.++..... .........+++.+ ....+.+.+..
T Consensus 675 ~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt------vpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~ 747 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT------VPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEY 747 (1096)
T ss_pred hcccccccCCceEEEecCCceEEEEecchhhcceee------ecCCCChhheEecc-cceEEEEEecccccchhhcCCcc
Confidence 111112223334555556666666665543221111 11222333334332 11222222111
Q ss_pred --CcEEEEeCCCceeeEeeeC--CcceEEEeeeeeecCCCEEEEEee----------CCCcEEEEeCCCceEEEEEeCC-
Q 005254 376 --EQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGS----------KDNSVRLWDSESRCCVGVGTGH- 440 (706)
Q Consensus 376 --~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~- 440 (706)
..++++|.++.+.....+. .+.....+.+.+..+.+.++++|. ..|.|.++.......+.....+
T Consensus 748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 2466777777665543332 122222222225555455577764 3577888887764444333222
Q ss_pred -CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 441 -MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 441 -~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
.+.+.++..-.. + ++ ++-+..|++|++...+ .......+..++..+...-.|..+++|+--+.+.
T Consensus 828 v~Gav~aL~~fng-k-ll--A~In~~vrLye~t~~~----------eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 828 VKGAVYALVEFNG-K-LL--AGINQSVRLYEWTTER----------ELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred eccceeehhhhCC-e-EE--EecCcEEEEEEccccc----------eehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 344444443332 2 33 4455689999987653 3444455677888999999999999999888877
Q ss_pred EEeCCCcc--EEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC-------------------CceEEEEeec
Q 005254 520 VWRLPDLV--SVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-------------------GSCLKTFEGH 577 (706)
Q Consensus 520 i~d~~~~~--~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------------------~~~~~~~~~~ 577 (706)
+.-.+..+ ....-+. +....+++.+-.+.. ++.+..+|.+.+-..++ |+.+..+. |
T Consensus 894 ll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-h 971 (1096)
T KOG1897|consen 894 LLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-H 971 (1096)
T ss_pred EEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-e
Confidence 75554333 4433332 667788888776554 44456677777665432 12222332 3
Q ss_pred ccCEEE--EEEEeCCCEEEEEeCCCCEEEE
Q 005254 578 TSSVLR--ASFLTRGAQIVSCGADGLVKLW 605 (706)
Q Consensus 578 ~~~i~~--~~~s~~~~~l~~~~~dg~i~iw 605 (706)
..-|.+ -..+|-+..+..|+.+|.|-+-
T Consensus 972 g~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 972 GSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred cceEeeccccccCCCCcEEEEEccceEEEE
Confidence 333333 1234445567788888877654
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0037 Score=63.08 Aligned_cols=61 Identities=15% Similarity=0.263 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
|.|.-+|+.+++.+-..... .+...-.+.-.+..++.++.||.++.+|.++|+.+...+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~-~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKED-FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCC-CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 45778888888877665522 22111122335567778888999999999999999888753
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0028 Score=61.32 Aligned_cols=236 Identities=17% Similarity=0.094 Sum_probs=155.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..+.+..+.++-.....+...+...................+++++.+....+....++.|.+.|.....
T Consensus 38 ~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---------- 107 (381)
T COG3391 38 VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---------- 107 (381)
T ss_pred EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----------
Confidence 4555644344433333555555542222221222224455778888888777777778999999955432
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeC---CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK 561 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 561 (706)
......-......++++|+++.+.++.. ++.+.+.|..+.+.......-..+ ..++++|+|+.++... .++.|.
T Consensus 108 -~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 108 -VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred -eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 1222222236778999999988877765 688999999999888885544444 8999999999766654 788999
Q ss_pred EEEcCCCceEE-E----EeecccCEEEEEEEeCCCEEEEEeCC---CCEEEEECCCCeEEEEeccCCC-cEEEEEEcCCC
Q 005254 562 IWSISDGSCLK-T----FEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLWTVRTGECIATYDKHED-KIWALAVGKKT 632 (706)
Q Consensus 562 iwd~~~~~~~~-~----~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~ 632 (706)
+.|........ . .. -......+.++++|.++...... +.+...|..++.....-..-.. ....+.++|+|
T Consensus 186 vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 186 VIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred EEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence 99976665553 1 11 22344568999999977655444 5899999998887765221111 45678899999
Q ss_pred CEEEEEeC-CCcEEEEECCchhH
Q 005254 633 EMFATGGS-DALVNLWHDSTAAE 654 (706)
Q Consensus 633 ~~l~~~~~-dg~i~vw~~~~~~~ 654 (706)
+.+.+... .+.+.+-|..+...
T Consensus 265 ~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 265 KAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred CEEEEEecCCCeEEEEeCCCCce
Confidence 98877643 47777777766543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0013 Score=63.78 Aligned_cols=224 Identities=12% Similarity=0.130 Sum_probs=124.1
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE-EecCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW-SFDGLSDD 477 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~-~~~~~~~~ 477 (706)
+..+. .+|+++. +++ +.+|...++.....+.... +.-...+|.+.++ +++-..+++|.++ ++....
T Consensus 35 p~~ls--~npngr~-v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~-- 101 (443)
T PF04053_consen 35 PQSLS--HNPNGRF-VLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV-- 101 (443)
T ss_dssp -SEEE--E-TTSSE-EEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T--
T ss_pred CeeEE--ECCCCCE-EEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc--EEEEECCCeEEEEEcCcccc--
Confidence 44454 7788877 444 5678888887554443332 3445678888554 6666668889996 332211
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 557 (706)
...+. ....+..+-. |.+|...+.+ .|.+||..+++.+..+... +|..+.|++++.+++..+.+
T Consensus 102 ---------~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 102 ---------VKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp ---------T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred ---------ceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 00010 1112233332 8788877654 8999999999999988743 48999999999999998766
Q ss_pred CcEEEEEcCCC-----------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 558 KTIKIWSISDG-----------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 558 g~i~iwd~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
.+.|++.+.. .....+..-...|.+..|..| .++-.+.. .++- +..|+. ..+..-..++.=+
T Consensus 166 -~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yll 238 (443)
T PF04053_consen 166 -SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLL 238 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEE
T ss_pred -eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEE
Confidence 4888875432 133444333568888999766 44444444 6665 445543 2222224567777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 627 AVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 627 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
...+..+.+.....|+.+..+.++.....-+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~ 270 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDLSELEFKT 270 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--HHHHHHHH
T ss_pred EEEccCCEEEEEECCCCEEEEEECHHHHHHHH
Confidence 88887788998999999999999887665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-05 Score=71.97 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=114.9
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC---CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
+.....+......+..-+|+|+++.+....-.. ..+.++++..+.. .........-...+|+|||+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----------~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----------PVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----------ceeeccCCccCCccCCCCCC
Confidence 333444455556677778888888544443222 3588888877632 11222333445678999998
Q ss_pred EEEEee-CCCc--EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CC--cEEEEEcCCCceEEEEeecccCE
Q 005254 508 LVCTGS-QDRT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DK--TIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 508 ~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.|+... .||. |+++|+....... +....+.-+.=.|+|||+.++..+. .| .|.+++.+.... ..+......-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 887544 4554 6777887766333 4433333346689999998876654 44 466677765544 3333233332
Q ss_pred EEEEEEeCCCEEEEEeCC-CC--EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 582 LRASFLTRGAQIVSCGAD-GL--VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
..-.|+|||++++..+.. |. |.+.|+.++..++.+. +......-.|.++++.++.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 367899999999887753 44 6677776666443332 2223334456666666554
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0042 Score=57.57 Aligned_cols=298 Identities=16% Similarity=0.180 Sum_probs=137.1
Q ss_pred eEEcCCCCEEEEeeC---C-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 25 LVVSSDGSFIACACG---E-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~---~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
=+|.+||+.|+++++ . .+++.|+.+++..+.-.+.........++|+.+.++-......|+--|+++.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 467899988888776 2 799999999998775554333333567788888887665666899999999887666666
Q ss_pred cCCCeEEEEE--CCCCCEEEEecC----------------------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCC
Q 005254 101 HDGPAIGMAC--HPSGGLLATAGA----------------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 101 ~~~~v~~~~~--s~~~~~l~~~~~----------------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (706)
....+-...| +.|+..++-.-. ...|.--|+.+|+....+. -...+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 6665554555 446666554311 2356667888887655544 56678899999986
Q ss_pred CceEEEEEec----CC-eEEEEECC-CCeeEEEeecc--cceEEEEEEecCCCEEEEEe-----CCCEEEEEeCCCCcce
Q 005254 157 DKSLLFSGSD----DA-TVRVWDLL-AKKCVATLDKH--FSRVTSMAITSDGSTLISAG-----RDKVVNLWDLRDYSCK 223 (706)
Q Consensus 157 ~~~~l~~~~~----dg-~i~vwd~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-----~dg~i~~w~~~~~~~~ 223 (706)
.. ++.-+. +. .-++|-++ .+...+.+..+ ...+..=-|.|||..|.--+ .+..|.-++..+++..
T Consensus 200 p~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 200 PT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EE--EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CC--EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 65 333332 22 12556443 23333333322 23455556899998766533 2456777888877654
Q ss_pred eeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCC
Q 005254 224 LTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDS 303 (706)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (706)
...+.+ ...-...++++..+..--.. ....... ... . ....+..|++++...+...................
T Consensus 278 ~~~~~p-~~~H~~ss~Dg~L~vGDG~d---~p~~v~~-~~~-~--~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 278 RLMEMP-WCSHFMSSPDGKLFVGDGGD---APVDVAD-AGG-Y--KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR 349 (386)
T ss_dssp EEEEE--SEEEEEE-TTSSEEEEEE--------------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred EEEeCC-ceeeeEEcCCCCEEEecCCC---CCccccc-ccc-c--eecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence 322222 22233344555422111000 0000000 000 0 01123467777877765443333222111111111
Q ss_pred ccceeEEEEccCCCeeEEEee-CCceEEEEe
Q 005254 304 KRGFTAATVLPSNQGLLCVTA-DQQLLLYTT 333 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 333 (706)
...-....|+|+++.++..+. .|...+|-.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 123467789999999876554 455555543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00029 Score=68.01 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=111.6
Q ss_pred eecCCCEEEEEeeCC---CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 406 ALSSGKILIVTGSKD---NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 406 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
+.+++..+....-.. ..+.++++.+++...... ..+.-..-+|+|+|+.++++...||...+|-++.....
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----- 273 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----- 273 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----
Confidence 666666644433222 358889998887665544 33445567899999988889998887766655433211
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC-C
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD-K 558 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g 558 (706)
...+....+.-+.-.|+|||+.++..+. .| .|.+++......... ......-..-.|+|||++++..+.. |
T Consensus 274 ----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 274 ----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred ----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcCccCCCCCCEEEEEeccCC
Confidence 1112222222336689999999887654 34 366777766654332 2222222367899999999887643 4
Q ss_pred c--EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC
Q 005254 559 T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 559 ~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 599 (706)
. |.+.|+.++...+.+. +......-.|.++|+.+...+..
T Consensus 349 ~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 349 QWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccC
Confidence 4 6777776665444443 33344456778888877655443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-05 Score=71.59 Aligned_cols=91 Identities=16% Similarity=0.182 Sum_probs=72.1
Q ss_pred EEEEEccCCeEE--Eee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 42 INIVDLSNASIK--STI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 42 i~i~d~~~~~~~--~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
-.+|+...++.. ... -.....|.|.+++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|..++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 667777655432 111 236778999999999999999999999999998776433 333456788999999999999
Q ss_pred EecCCCcEEEEECCCC
Q 005254 119 TAGADRKVLVWDVDGG 134 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~ 134 (706)
+|+..|.+.+||+.-.
T Consensus 316 V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 316 VGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCceEEEEEeecC
Confidence 9999999999998543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0091 Score=60.28 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC-ccEE---E-------EEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS-DTIT---A-------LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~-~~i~---~-------l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-...... ..+. + +++. +..++.++.++.|.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4544444455689999999999875554211 1111 1 2222 346677788999999999999998876
Q ss_pred eccCCC-eEEEEECC---CCCEEEEec------CCCcEEEEECCCCeEEEEee
Q 005254 99 KGHDGP-AIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 99 ~~~~~~-v~~~~~s~---~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~ 141 (706)
...... -..+.-+| ++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 532110 01111122 34 455543 26889999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00034 Score=66.34 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=66.1
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE-EEEEEccC--------------
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI-WSVEFSPV-------------- 547 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~s~~-------------- 547 (706)
.......+......+.+++.+|++++.|+.+.-|.|.++|+.++..++.+++..+.= .-+.....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 333455566667789999999999999998888999999999998888777654421 11111111
Q ss_pred ---CC-EEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 548 ---DQ-VVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 548 ---~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
.. +++-+-.-|.|.||+++.|..+..+..
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 11 234456688899999998888777653
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0051 Score=61.00 Aligned_cols=202 Identities=18% Similarity=0.251 Sum_probs=114.7
Q ss_pred eccceEEcCCCCEEEEeeC--C----eEEEEEccCCeEEEe-ecCCCccEEEEEEccCCCEEEEEec-----------cC
Q 005254 21 GGGPLVVSSDGSFIACACG--E----SINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGH-----------SR 82 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~--~----~i~i~d~~~~~~~~~-l~~~~~~i~~l~~s~~~~~l~s~~~-----------d~ 82 (706)
..+...+||||+++|++.+ + .++++|+.+++.+.. +... .-..+.|.+|++.++.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3346889999999998843 2 599999999987642 2321 1234999999888765532 33
Q ss_pred eEEEEECCCCeE--EEEeeccCCC--eEEEEECCCCCEEEEec---CC-CcEEEEECCCC----eEEEEeeCCCCcE-EE
Q 005254 83 EIRVWDLSTLKC--LRSWKGHDGP--AIGMACHPSGGLLATAG---AD-RKVLVWDVDGG----FCTHYFKGHKGVV-SS 149 (706)
Q Consensus 83 ~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~---~d-~~i~vw~~~~~----~~~~~~~~~~~~v-~~ 149 (706)
.|..|.+.+... ...+...... ...+..++|+++|+... .+ ..+.+.+...+ .....+......+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 488888876642 2334443332 67889999999988643 23 45888888775 2233333333333 33
Q ss_pred EEEcCCCCceEEEEE--ecCCeEEEEECCCCee---EEEeecccc--eEEEEEEecCCCEEEEE-eCCC--EEEEEeCCC
Q 005254 150 ILFHPDTDKSLLFSG--SDDATVRVWDLLAKKC---VATLDKHFS--RVTSMAITSDGSTLISA-GRDK--VVNLWDLRD 219 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~-~~dg--~i~~w~~~~ 219 (706)
+... ++..++.+. ...+.|...++..... ...+..+.. .+..+.. .+.+|+.. -.++ .|+++++..
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 4333 344344442 3456777778776652 224444544 3444444 34445544 3343 688889884
Q ss_pred CcceeeecC
Q 005254 220 YSCKLTVPT 228 (706)
Q Consensus 220 ~~~~~~~~~ 228 (706)
+.....++.
T Consensus 359 ~~~~~~~~~ 367 (414)
T PF02897_consen 359 GKESREIPL 367 (414)
T ss_dssp TEEEEEEES
T ss_pred CcEEeeecC
Confidence 444444433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.014 Score=61.17 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=117.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc--------EEEEEEc----------------cCCCEEEEEeccCeEE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT--------ITALALS----------------PDDKLLFSSGHSREIR 85 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~--------i~~l~~s----------------~~~~~l~s~~~d~~i~ 85 (706)
++.+.++...+.|+-.|..+|+.+-.++..... -..+++- ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 554444444568999999999987655432110 1122221 1345788888999999
Q ss_pred EEECCCCeEEEEeeccCCCeE-------------EEEECC--CCCEEEEecC----------CCcEEEEECCCCeEEEEe
Q 005254 86 VWDLSTLKCLRSWKGHDGPAI-------------GMACHP--SGGLLATAGA----------DRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~-------------~~~~s~--~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~ 140 (706)
-.|.++|+.+..+.. .+.|. .+.-+| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999987642 22211 111222 2345666532 588999999999988776
Q ss_pred eCC---------CCc--------E-EEEEEcCCCCceEEEEE----------------ecCCeEEEEECCCCeeEEEeec
Q 005254 141 KGH---------KGV--------V-SSILFHPDTDKSLLFSG----------------SDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 141 ~~~---------~~~--------v-~~~~~~~~~~~~~l~~~----------------~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
..- .+. + ..+++.++....++-+| ...+.|.-.|.++|+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 011 1 22333333222111111 1235677778889988877654
Q ss_pred ccce---------EEEEEEec-CCC---EEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 187 HFSR---------VTSMAITS-DGS---TLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 187 ~~~~---------v~~~~~~~-~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.... ..-+.+.. +|+ .++.++.+|.+.+.|-++++.+...+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 2111 11222332 553 788999999999999999998766543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0018 Score=61.95 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=121.6
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC------C-c--------------------------ccccceeEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA------E-Q--------------------------PMNLKAKAV 489 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~------~-~--------------------------~~~~~~~~~ 489 (706)
.|+.+.+.++.. -|+++...|.|-+|.+...+... . + .....+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578888988865 58888889999999876543221 0 0 001223334
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--------cCCcEEEEEEcc-----CC---CEEEE
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--------HKRGIWSVEFSP-----VD---QVVIT 553 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~s~-----~~---~~l~~ 553 (706)
+....++|++++.|.= -++|+|..+|.+.|.|++....+..-.- ....|+++.|+- |+ -.|++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4556789999999844 4999999999999999988777765321 233578888863 33 47889
Q ss_pred ecCCCcEEEEEcCC---Cce----EEEEeecccCEEEEE-EEeCC--------------------CEEEEEeCCCCEEEE
Q 005254 554 ASGDKTIKIWSISD---GSC----LKTFEGHTSSVLRAS-FLTRG--------------------AQIVSCGADGLVKLW 605 (706)
Q Consensus 554 ~~~dg~i~iwd~~~---~~~----~~~~~~~~~~i~~~~-~s~~~--------------------~~l~~~~~dg~i~iw 605 (706)
|...|.+.+|.+.- +.- ......+.+++..+. |..+. .-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998741 111 112223556666554 32221 123334446779999
Q ss_pred ECCCCeEEEEeccCCCcEEEEEE-----cCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 606 TVRTGECIATYDKHEDKIWALAV-----GKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 606 d~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
...+.+.........-....+.+ ...+..|++...+|.++++.+..=++.
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 99988876655532223334445 235677888999999999999875543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.007 Score=56.18 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=130.5
Q ss_pred eEeCCCCcEEEEEecC--CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE
Q 005254 360 KFLGEEEQYLAVATNI--EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 360 ~~~~~~~~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 437 (706)
+|.++..+++..+..+ ..+++.|+.+++..+.-.+........ +.+++++. ++-......++-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~--~~s~~~~~-~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGG--FLSPDDRA-LYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT---EE-TTSSE-EEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccce--EEecCCCe-EEEEECCCeEEEEECCcCcEEEEE
Confidence 3444344444444434 467888999988876665443222111 15577766 444445568899999998877766
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecC-----------------------CCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSS-----------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
.....-+....|..+.....+++.. ...|.--|+.++ .........
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-----------~~~~v~~~~ 187 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-----------ERKVVFEDT 187 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-------------EEEEEEES
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-----------ceeEEEecC
Confidence 6666666555554321112222211 112222233322 334444556
Q ss_pred cceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCC-ccEEEEEeecC--CcEEEEEEccCCCEEEEe-----cCCCcEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDR-----TACVWRLPD-LVSVVTFRGHK--RGIWSVEFSPVDQVVITA-----SGDKTIK 561 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~-----~~dg~i~ 561 (706)
..+..+.|+|...-++.=+..| .-+||-+.+ +.....+..+. ..+..=-|.|||..|.-- +.+..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 6778899999665555444333 135665442 33333333322 234555789999876652 2355677
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC----------------CEEEEECCCCeEEEEe---------
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG----------------LVKLWTVRTGECIATY--------- 616 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~--------- 616 (706)
-+|+.+++...... ......+.-++||++++-=+.|. -|+++++..++.....
T Consensus 268 ~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 268 GYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVL 345 (386)
T ss_dssp EE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------B
T ss_pred eeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceee
Confidence 78888886644332 23455667778888776533332 4667888877643211
Q ss_pred ccCCC-cEEEEEEcCCCCEEE-EEeCCCcEEEEECC
Q 005254 617 DKHED-KIWALAVGKKTEMFA-TGGSDALVNLWHDS 650 (706)
Q Consensus 617 ~~~~~-~v~~~~~s~~~~~l~-~~~~dg~i~vw~~~ 650 (706)
.++.. .=....||||+++++ ++...|...||-++
T Consensus 346 ~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 11111 124678999999876 55668888887654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0034 Score=59.56 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=106.4
Q ss_pred CcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecCC----CEEEEEeeC----------CCcEEEEeCCCc----eEEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSG----KILIVTGSK----------DNSVRLWDSESR----CCVGV 436 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~ 436 (706)
..|+++|..+.+.+..+.- ....+.++..+....+ ..++++|+. .|.+.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577788777766554443 2334555554444442 566777643 289999999884 12222
Q ss_pred --EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 437 --GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 437 --~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
.....++|++++--.+ .++++ .++.|.+|++.... ...... .......++++... ++++++|+.
T Consensus 82 i~~~~~~g~V~ai~~~~~---~lv~~-~g~~l~v~~l~~~~-------~l~~~~-~~~~~~~i~sl~~~--~~~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNG---RLVVA-VGNKLYVYDLDNSK-------TLLKKA-FYDSPFYITSLSVF--KNYILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEETT---EEEEE-ETTEEEEEEEETTS-------SEEEEE-EE-BSSSEEEEEEE--TTEEEEEES
T ss_pred EEEEeecCcceEhhhhCC---EEEEe-ecCEEEEEEccCcc-------cchhhh-eecceEEEEEEecc--ccEEEEEEc
Confidence 2345788998887733 33333 34789999998763 111112 22222355555554 569999998
Q ss_pred CCcEEEEeCCC-ccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 515 DRTACVWRLPD-LVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 515 dg~i~i~d~~~-~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
...+.++.... ...+..+.. ....++++.|-++++.++.+..+|.+.++...
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888885543 222222222 34568889998776799999999999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0041 Score=57.65 Aligned_cols=231 Identities=12% Similarity=0.124 Sum_probs=130.3
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCC-CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
....++. ++.|+++| +.+++.. ......... ...|..+...++-+ .+++- .|+.+.++++.............
T Consensus 3 ~~~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 3 ADSWGDR-LLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cccCCCE-EEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccC-EEEEE-cCCccEEEEchhhcccccccccc
Confidence 3445566 88888888 8999883 233333222 23399999999866 34433 34999999998764333111000
Q ss_pred ce----eEEEeecCcceEEEE--EcCCC-CEEEEeeCCCcEEEEeCCCc-----cEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 485 KA----KAVVAAHGKDINSLA--VAPND-SLVCTGSQDRTACVWRLPDL-----VSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 485 ~~----~~~~~~~~~~i~~~~--~s~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.. ..........+...+ -...+ ..|+++ ..+.|.+|..... +....+. -...+.+++|. ++.++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence 00 000111223344444 22233 445544 4558888887653 3444444 45778899998 56777
Q ss_pred EecCCCcEEEEEcCCCceEEEEeecc------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--Eecc
Q 005254 553 TASGDKTIKIWSISDGSCLKTFEGHT------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDK 618 (706)
Q Consensus 553 ~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~ 618 (706)
.|..++ ..+.|+.++.....+.... .++..+.. +++.+|++- |..-...| ..|++.+ .+.-
T Consensus 153 v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W 227 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQW 227 (275)
T ss_pred EEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEc-CCCCcCcccEEEc
Confidence 776665 8899998776544432111 22333333 345677653 33233334 3555443 2222
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 619 HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 619 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.....++++ ...||+..+. +.|.||++.+++..
T Consensus 228 -~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 228 -SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred -CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 335556666 4568887665 45999999998654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0077 Score=57.13 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=125.7
Q ss_pred cEEEEeCCCceEEEEEeC-CCcCeEEEE---EecC---CCeEEEEecC---------C-CeEEEEEecCCCCCCCccccc
Q 005254 422 SVRLWDSESRCCVGVGTG-HMGAVGAVA---FSKK---LQNFLVSGSS---------D-HTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~-~~~~v~~~~---~~~~---~~~~l~~~~~---------d-~~i~i~~~~~~~~~~~~~~~~ 484 (706)
.|++.|..+.+.+..+.- ....+.+++ +..+ ...+++.|.. . |.|.++++.... ......
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---ENNFKL 79 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------EE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc---ccceEE
Confidence 577777777766655432 233444443 3322 1457777643 2 899999998741 001112
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
+.. ......++|++++-- ++. |+++. ++.|.+|++...+ ....-.- ....++++... +++++.|+....+.+
T Consensus 80 ~~i-~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 80 KLI-HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEE-EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEE-EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 222 223456788888876 444 44443 5789999998777 3333221 23355555554 669999998888888
Q ss_pred EEcCC-CceEEEEee--cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC-------C--eEEEEec-cCCCcEEEE---
Q 005254 563 WSISD-GSCLKTFEG--HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT-------G--ECIATYD-KHEDKIWAL--- 626 (706)
Q Consensus 563 wd~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~-~~~~~v~~~--- 626 (706)
+..+. +..+..+.. ....++++.|.++++.++.++.+|.+.++.... + +...... ...+.|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 86543 332333322 344688899987778999999999999998762 2 2222222 224567777
Q ss_pred EEcCC--CC------EEEEEeCCCcEEEEEC
Q 005254 627 AVGKK--TE------MFATGGSDALVNLWHD 649 (706)
Q Consensus 627 ~~s~~--~~------~l~~~~~dg~i~vw~~ 649 (706)
.+.|. +. .++-++.+|.|.+.-.
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 55552 22 3777889999985443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0099 Score=55.12 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=129.5
Q ss_pred cCCCCEEEEeeCCeEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe--------
Q 005254 28 SSDGSFIACACGESINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------- 98 (706)
Q Consensus 28 s~dg~~l~~~~~~~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------- 98 (706)
...++.|+.|+.+.+++++.... +..... +...|..+...|+-+.|++-+ |+.+.++++........-
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 34678888898888999998333 333333 234499999999888877765 489999999765443311
Q ss_pred ------eccCCCeEEEE--ECCC-CCEEEEecCCCcEEEEECCCC-----eEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 99 ------KGHDGPAIGMA--CHPS-GGLLATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 99 ------~~~~~~v~~~~--~s~~-~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
......+...+ -.+. ..+|+++ ....|.+|.+... +..+.+. -...+..++|.+ +. ++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~--i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NK--ICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CE--EEEE
Confidence 11233444444 1223 3445544 4568999988653 3445554 558889999984 33 6666
Q ss_pred ecCCeEEEEECCCCeeEEEeeccc------------ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcce--eeecCcc
Q 005254 165 SDDATVRVWDLLAKKCVATLDKHF------------SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCK--LTVPTYE 230 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~--~~~~~~~ 230 (706)
..++ ..+.|+.++.....+.... .++..+.. +++.+|++. +..-.+.|. .++.. ..+.-..
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~ 229 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS 229 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC
Confidence 6555 8889998776544432111 12333333 345555543 333333443 33222 2233333
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
.+..+.+..+ +++..+. +.|.+|++.++.+.+..
T Consensus 230 ~p~~~~~~~p-------------------------yli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 230 APQSVAYSSP-------------------------YLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred chhEEEEECC-------------------------EEEEECC-CEEEEEECcCCcEEEEE
Confidence 3333333221 5555555 55999999998665443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00039 Score=70.29 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=107.1
Q ss_pred cceEEcCCCCEEEEee-------CC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc------------
Q 005254 23 GPLVVSSDGSFIACAC-------GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------------ 81 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~-------~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------------ 81 (706)
+..++||||+.+|+.. +. .|.+++. .+.....+.+. ..+.-.|+|||+.|++....
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 4789999999999987 22 5777775 33333334443 37899999999988877532
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE---EECCCCeE-E---EEee-CCCCcEEEEEEc
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV---WDVDGGFC-T---HYFK-GHKGVVSSILFH 153 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v---w~~~~~~~-~---~~~~-~~~~~v~~~~~~ 153 (706)
+.+.+.++..++... ...+.|..+.|||||.++|... ++.|.+ -....|.. + ..+. .-...+..+.|.
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 223333443333322 2356799999999999999876 477777 44445541 1 1122 233446889999
Q ss_pred CCCCceEEEEEecCCeEEEEECC-CCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEE
Q 005254 154 PDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNL 214 (706)
Q Consensus 154 ~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 214 (706)
.++. |+.+..++.-.+|.+. .|.....+.. ...++..++=+++ .++....+|.+.+
T Consensus 506 ~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 506 TGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 9866 3444444444455432 1222222222 2456767766653 4666666764433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0028 Score=65.21 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=100.7
Q ss_pred CCCEEEEE-eccCeEEEEECCCCeEEEEeeccCCC-eEEEEECC-----CCCEEEEecCCCcEEEEECCCC--eEEEE-e
Q 005254 71 DDKLLFSS-GHSREIRVWDLSTLKCLRSWKGHDGP-AIGMACHP-----SGGLLATAGADRKVLVWDVDGG--FCTHY-F 140 (706)
Q Consensus 71 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~-----~~~~l~~~~~d~~i~vw~~~~~--~~~~~-~ 140 (706)
+.++|..- .....|+-.|++.|+.+..++.|... |..++-.. +..-...|-.+..+..||.+-. +++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 34678999999999999999988654 55543321 1223455666788999998643 23321 1
Q ss_pred --eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 141 --KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 141 --~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
-.......|++-+.+|. +|.|+.+|.||+||-...+....+++-..+|.++..+.||++++..+ +..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~---iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY---IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCce---EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 12455678888887765 99999999999999544444455677788999999999999888776 566777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0057 Score=56.19 Aligned_cols=221 Identities=13% Similarity=0.047 Sum_probs=130.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++.+.++.+--..+.|.-|+..+++.... . ..+.+.++..-..+. .|+++... +.+++....... ..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-~-~p~~~~~~~~~d~~g-~Lv~~~~g--~~~~~~~~~~~~------t~ 100 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVF-P-SPGGFSSGALIDAGG-RLIACEHG--VRLLDPDTGGKI------TL 100 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEE-E-CCCCcccceeecCCC-eEEEEccc--cEEEeccCCcee------EE
Confidence 6677776677777788888898876643322 2 222334443333333 35444333 445554332110 00
Q ss_pred eeEEE-eecCcceEEEEEcCCCCEEEEeeC-----C----CcEEEEeCC-CccEEEEEeecCCcEEEEEEccCCCEEEEe
Q 005254 486 AKAVV-AAHGKDINSLAVAPNDSLVCTGSQ-----D----RTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 486 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-----d----g~i~i~d~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 554 (706)
..... .......+...+.|+|.+.+..-. . ..=.+|.+. .+.....+..+-..-+.|+||||++.|+.+
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 00000 111234567888899887775443 0 111344444 566666666656666789999999888877
Q ss_pred cCC-CcEEEEEcCC--Cc---e--EEEEeecccCEEEEEEEeCCCEEEEEeCCC-CEEEEECCCCeEEEEeccCCCcEEE
Q 005254 555 SGD-KTIKIWSISD--GS---C--LKTFEGHTSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 555 ~~d-g~i~iwd~~~--~~---~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
... +.|.-|++.. +. . ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+++
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 654 7788887752 11 1 112222345556677888888776555554 89999987 9999999887778888
Q ss_pred EEEc-CCCCEEEEE
Q 005254 626 LAVG-KKTEMFATG 638 (706)
Q Consensus 626 ~~~s-~~~~~l~~~ 638 (706)
++|- ++.+.|.+.
T Consensus 260 ~~FgG~~~~~L~iT 273 (307)
T COG3386 260 PAFGGPDLNTLYIT 273 (307)
T ss_pred ceEeCCCcCEEEEE
Confidence 8884 444544433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0046 Score=58.93 Aligned_cols=348 Identities=16% Similarity=0.153 Sum_probs=166.1
Q ss_pred EEEEEccCCCEEEEEeccCeEEE---EECC-----CCeEEEEeec---cC--CCeEEEEEC-----------CCCCEEEE
Q 005254 64 TALALSPDDKLLFSSGHSREIRV---WDLS-----TLKCLRSWKG---HD--GPAIGMACH-----------PSGGLLAT 119 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~i---wd~~-----~~~~~~~~~~---~~--~~v~~~~~s-----------~~~~~l~~ 119 (706)
..++.+|++++||.+..+..+.+ |+.. .+.......+ +. ..|+++.+- +|...+++
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 35789999999999977766655 6431 1222222222 11 467766553 35678999
Q ss_pred ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-------eEEEEEecCCeEEEEECCCCeeEEEeecccceEE
Q 005254 120 AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-------SLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVT 192 (706)
Q Consensus 120 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 192 (706)
|..+|.|++|.. +|.++..-.-|..+|..+.+...... .-|..-.. +.|.+.|-.+- ...++.....+.
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Idg~sL--~~~L~~~~~~~~ 160 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIIDGFSL--FSVLRACRNQVA 160 (415)
T ss_pred EecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEecHHH--HHHHHHHHHhhh
Confidence 999999999996 67766666668999999988542211 11333333 44555542111 111111111111
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc-cc-cchhhhccccccceEEEEe
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS-SY-NQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 270 (706)
...+..++ ......=..+.|.++....+........ .....+..... +. .-.............+++.
T Consensus 161 ~~~~~~~~---~~~~~~L~ykKw~l~~~~~i~D~~~~G~-------~~~~~fd~l~~aS~~gf~a~~~~s~~~~~~~i~~ 230 (415)
T PF14655_consen 161 RGAASGSD---SPAPPPLSYKKWNLQSQDTINDAAICGP-------MPPSTFDHLVTASIGGFNAKYRSSPPRMSRYITV 230 (415)
T ss_pred hhhhcccc---cCCCCccceeEecCCCCCcEeeEEEecC-------CCCcHHHHHHhhhcccccceeecCCcceEEEEEe
Confidence 11111111 0011112355666654443322211000 00001110000 00 0000011222334578888
Q ss_pred cCCCeEEEEECCCCeEEeeccC-cc-ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee----ccccceeeE
Q 005254 271 GERGIVRMWNADSACLYEQKSS-DV-TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE----VPEKKMELI 344 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~ 344 (706)
|.+-.+..+....+........ .. ........ .+ ...+.......-....... .++......
T Consensus 231 G~~P~v~f~~~~e~~s~~~ls~va~~aVas~l~s---av---------~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (415)
T PF14655_consen 231 GSSPFVSFYYASEGSSQPLLSDVASSAVASKLTS---AV---------SGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLP 298 (415)
T ss_pred cCCceEEEEEccCCCCcccHHHHHHHHHHHHHHh---hh---------HhhcccCCCCCccccccccccccCcCCCcccc
Confidence 8888888887665421100000 00 00000000 00 0000000000000000000 001112233
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC---------------
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS--------------- 409 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------- 409 (706)
....+......+..++..| .+.+.++..+-|.|.++|+.++..++.+++..+.-...-......
T Consensus 299 ~r~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eEEeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 3344455556677788777 488999999999999999999988887777554322211111111
Q ss_pred -CCEEEEEeeCCCcEEEEeCCCceEEEEEe
Q 005254 410 -GKILIVTGSKDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 410 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 438 (706)
...+++-+-..|.|.+|.+.++..+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 12345556678899999999887665443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.019 Score=56.09 Aligned_cols=214 Identities=12% Similarity=0.078 Sum_probs=108.5
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce------EEEEEeCCCcCeEEEEEe
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC------CVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~ 450 (706)
.|.+|+........ +.-..+.+.++. +.. +.. |++-..||.++++|+.... .+....-....+....+.
T Consensus 62 ~I~iys~sG~ll~~-i~w~~~~iv~~~--wt~-~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS-IPWDSGRIVGMG--WTD-DEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeEE-EEECCCCEEEEE--ECC-CCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccC
Confidence 37777766554333 322236777776 544 445 6667789999999986433 111111111222222333
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCC-ccc-ccceeEE-EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPM-NLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
.+| +++ -..++.+.+. ........ ... ....... ............++.+....+....++.+.+.+-...+
T Consensus 137 ~~G--ivv-Lt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 137 KNG--IVV-LTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCC--EEE-ECCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 343 232 2334443333 32221100 000 0000000 00011110112344455555555555666644433221
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec-ccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
. +. ..+++..++.||+++++|.-..+|.+.+.+..-.+.+.++... ......+.|.-++..++.- ...+.+..
T Consensus 212 ~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 212 Q---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred c---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1 22 3468999999999999999999999999987666666666544 3466778887664433332 33455554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.013 Score=53.97 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=130.3
Q ss_pred ceEEcCCCCEEEEee--CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 24 PLVVSSDGSFIACAC--GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
.-.+.++.+.|+... ++.|.-|+..+++... +. +.+.+.++..-..+..|+++.. .+.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 356778888666554 3489999988776432 32 2334455555555555655532 367777776665433321
Q ss_pred ----cCCCeEEEEECCCCCEEEEecC---------CCcEEEEECC-CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 101 ----HDGPAIGMACHPSGGLLATAGA---------DRKVLVWDVD-GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 101 ----~~~~v~~~~~s~~~~~l~~~~~---------d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
.....+.+...|+|.+.++... ...-.+|-++ .+..+..+..+-..-+.|+||||++. ++++=+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCE-EEEEeCC
Confidence 1245567888999987666433 1112455554 56666666666677789999999874 4555556
Q ss_pred CCeEEEEECCC--Ce-----eEEEeecccceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCc-ceeeeEEe
Q 005254 167 DATVRVWDLLA--KK-----CVATLDKHFSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTY-EMVEAVCA 237 (706)
Q Consensus 167 dg~i~vwd~~~--~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~-~~~~~~~~ 237 (706)
.+.|.-|++.. +. .......+.+..-.++...+|.+-+++..+| .|..|+.+ ++.+..+..+ ..+...+|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 68888887752 11 1122233456677788888888765554444 89999988 8877777766 44555555
Q ss_pred eC
Q 005254 238 IP 239 (706)
Q Consensus 238 ~~ 239 (706)
--
T Consensus 263 gG 264 (307)
T COG3386 263 GG 264 (307)
T ss_pred eC
Confidence 43
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.033 Score=58.41 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccCCC--------eEEEEEC----------------CCCCEEEEecCCCcEE
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP--------AIGMACH----------------PSGGLLATAGADRKVL 127 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~s----------------~~~~~l~~~~~d~~i~ 127 (706)
+..|..++.++.|.-.|.++|+.+.++...... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567777888899999999999999887643221 1123332 1345788888999999
Q ss_pred EEECCCCeEEEEeeCCCCcEE-------------EEEEcC--CCCceEEEEEec----------CCeEEEEECCCCeeEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVS-------------SILFHP--DTDKSLLFSGSD----------DATVRVWDLLAKKCVA 182 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~ 182 (706)
-.|.++|+.+..+. ..+.|. .+.-.| .++ .++.|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999999887764 222221 011111 012 2555542 6889999999999887
Q ss_pred Eee
Q 005254 183 TLD 185 (706)
Q Consensus 183 ~~~ 185 (706)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=68.18 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=100.7
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecC----CCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKK----LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
..+|........++-.|++.|+.+.....+... |..++-... ...-.+.|-.+..+..||.+-..... . .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~----v-~ 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL----V-D 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce----e-e
Confidence 333444456678999999999999998877644 555543211 11235677788889999987542100 0 0
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
............+|++-+.+| ++|+|+.+|.||+||-........+++-..+|..|..+.||++++..+.. .+.+++.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 011112345567888888777 88999999999999954334444566778999999999999998876554 4777764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.003 Score=64.13 Aligned_cols=148 Identities=11% Similarity=0.032 Sum_probs=88.4
Q ss_pred CccEEEEEEccCCCEEEEEe------ccC--eEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCC--------
Q 005254 60 SDTITALALSPDDKLLFSSG------HSR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD-------- 123 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 123 (706)
...+.+.++||||+.+|... .|. .|.+++. .+.. ..+.. ....+.-.|+|||+.|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 34678999999999988654 233 4555554 2233 33322 2247888999999988877532
Q ss_pred ----CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE---EECCCCee-E---EEee-cccceE
Q 005254 124 ----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV---WDLLAKKC-V---ATLD-KHFSRV 191 (706)
Q Consensus 124 ----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~-~---~~~~-~~~~~v 191 (706)
+.+.+.+++.++... ...+.|..+.|+|||....+++ +|.|.+ -....|.. + ..+. .-...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 233333444443322 2356799999999999844444 467777 44444541 1 1122 222346
Q ss_pred EEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 192 TSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
..+.|..++.++ ++..++.-.+|.+
T Consensus 500 ~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ccceEecCCEEE-EEecCCCCceEEE
Confidence 889999998854 5555554445543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.2e-05 Score=71.17 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEE-EEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
..+.-+.|+|.-.++|.+..+|.+.+..+. .+.+.+++-|...++ +++|.|||+.||+|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457789999999999999999999999998 888888887887887 999999999999999999999999999987766
Q ss_pred Ee-ecccCEEEEEEE
Q 005254 574 FE-GHTSSVLRASFL 587 (706)
Q Consensus 574 ~~-~~~~~i~~~~~s 587 (706)
.. .....|.++.|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 32 244567777775
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.9e-06 Score=79.11 Aligned_cols=198 Identities=19% Similarity=0.249 Sum_probs=129.5
Q ss_pred CeEEEEEecCC-CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEee----CCC
Q 005254 443 AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGS----QDR 516 (706)
Q Consensus 443 ~v~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----~dg 516 (706)
.+.++++.-+. +.++++|..+|.|-+-.+...... ......++..+.++++|++ |.+.||+|- .|.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc--------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 44455544332 358889999999999888764321 3344556778889999998 566777764 356
Q ss_pred cEEEEeCCCc--cE--EEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceEEEEeecccCEEEEEEEe-C
Q 005254 517 TACVWRLPDL--VS--VVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCLKTFEGHTSSVLRASFLT-R 589 (706)
Q Consensus 517 ~i~i~d~~~~--~~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-~ 589 (706)
.+.|||+.++ .+ ...+.+ ......+++|..+.+++.+|.....+.++|++-. .....+ ....+..+...| .
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFS 207 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCC
Confidence 7999999876 22 122222 3345568899988999999999999999998622 222222 233455667777 6
Q ss_pred CCEEEEEeCCCCEEEEE-CCCCe-EEEEeccC----CCcEEEEEEcCCCC-EEEEEeC-CCcEEEEECCc
Q 005254 590 GAQIVSCGADGLVKLWT-VRTGE-CIATYDKH----EDKIWALAVGKKTE-MFATGGS-DALVNLWHDST 651 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~----~~~v~~~~~s~~~~-~l~~~~~-dg~i~vw~~~~ 651 (706)
+.|+++-. ||.|.+|| ..+-+ ++..+... ...+..++|.|... .+++... .++|+.+++..
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 67887765 89999999 33322 23222222 23488999998644 4555554 47788888654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0033 Score=46.24 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 497 INSLAVAP---ND-SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 497 i~~~~~s~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
|+++++.. || +.|++|+.|..|++|+- .+.+..+. ....|++++-... ..++.+..+|+|-+|+- ...+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 45666554 32 68999999999999983 35555555 4567888877765 66888999999999985 33344
Q ss_pred EEeecccCEEEEEEEeCC----CEEEEEeCCCCEEE
Q 005254 573 TFEGHTSSVLRASFLTRG----AQIVSCGADGLVKL 604 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i 604 (706)
..+. ...++++.+..-. .-|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 4442 3346666654422 26888888887743
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0027 Score=54.78 Aligned_cols=196 Identities=13% Similarity=0.128 Sum_probs=119.6
Q ss_pred eeeeeeeccceEEcCCCCEEEEeeCC------eEEEEEccCC-eEEEeecCCCccEEEEEEccCCCEEEEEec-------
Q 005254 15 VLQQFYGGGPLVVSSDGSFIACACGE------SINIVDLSNA-SIKSTIEGGSDTITALALSPDDKLLFSSGH------- 80 (706)
Q Consensus 15 ~~~~~~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~-~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~------- 80 (706)
.-..||+. =.|||||.+|+...++ .|-|||...+ +.+..+..|.-.-..+.+.+||+.++.+..
T Consensus 111 ~~RHfyGH--Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd 188 (366)
T COG3490 111 EGRHFYGH--GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD 188 (366)
T ss_pred cCceeecc--cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccc
Confidence 33445554 4799999999888764 4889998744 355677778777789999999999988632
Q ss_pred -----------cCeEEEEECCCCeEEEE--ee--ccCCCeEEEEECCCCCEEEEecCCC-----cEEEEECCCCeEEEEe
Q 005254 81 -----------SREIRVWDLSTLKCLRS--WK--GHDGPAIGMACHPSGGLLATAGADR-----KVLVWDVDGGFCTHYF 140 (706)
Q Consensus 81 -----------d~~i~iwd~~~~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~ 140 (706)
...+.+-|..+|.++.+ +. -+.-.|..++..+||..++.+-..| --.+=-...++.+..+
T Consensus 189 fgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 189 FGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred cCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 23455556556665543 22 2456788899999987666553222 1112222233333333
Q ss_pred eC-------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 141 KG-------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 141 ~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.- ...-|-+++.+-+ ...+.++.-..+...+||..+|..+..-.- .....++- ...-+++.+.+|.+.
T Consensus 269 ~~pee~~~~~anYigsiA~n~~-~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~ 343 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRR-DGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRII 343 (366)
T ss_pred CCCHHHHHHHHhhhhheeeccc-CCeEEEecCCCCeEEEEEcCCCcEEecccc--ccccccee--ccCceEEecCCceEE
Confidence 21 1234666777654 344455555667788999999987754321 11222322 233355566688888
Q ss_pred EEeC
Q 005254 214 LWDL 217 (706)
Q Consensus 214 ~w~~ 217 (706)
++.-
T Consensus 344 ~~s~ 347 (366)
T COG3490 344 FYSR 347 (366)
T ss_pred eccc
Confidence 7743
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=70.31 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeE-EEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.|||+.||+|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999987 788888987888887 99999999999999999999999999998776
Q ss_pred Ee-eCCCCcEEEEEEcC
Q 005254 139 YF-KGHKGVVSSILFHP 154 (706)
Q Consensus 139 ~~-~~~~~~v~~~~~~~ 154 (706)
.+ ......|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 63 22456777888864
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.046 Score=54.27 Aligned_cols=240 Identities=12% Similarity=0.102 Sum_probs=133.1
Q ss_pred eecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----------CeEEEEEe
Q 005254 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSF 471 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~i~~~ 471 (706)
++|+++.++++-+..| .++++|+.+++.+...-.. .....+.|.++++.++.+...+ ..|+.|++
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 7888998666655555 4999999999776542111 1222399999988666665433 23566666
Q ss_pred cCCCCCCCcccccceeEEEeecCcc--eEEEEEcCCCCEEEEeeCC----CcEEEEeCCCc----cEEEEEeecCCcEEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKD--INSLAVAPNDSLVCTGSQD----RTACVWRLPDL----VSVVTFRGHKRGIWS 541 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~ 541 (706)
.+... .....+...... ...+..++|+++|+..... ..+.+.++..+ .....+......+..
T Consensus 210 gt~~~--------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 210 GTPQS--------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp TS-GG--------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred CCChH--------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 54311 112333333332 5678899999998864432 34788888764 333444444444443
Q ss_pred EEEccCCCEEEEec---CCCcEEEEEcCCCce---EEEEeecccCEEEEEEEeCCCEEEEEe-CCC--CEEEEECCCCeE
Q 005254 542 VEFSPVDQVVITAS---GDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSCG-ADG--LVKLWTVRTGEC 612 (706)
Q Consensus 542 ~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~ 612 (706)
..-+..+.+++... ..+.|...++.+... ...+..+...+.-..+...+.+|+... .++ .|+++++..+..
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 33333444444332 245677778776653 335555665444444555555665544 444 688999984444
Q ss_pred EEEec-cCCCcEEEEEEcCCCCEEE-EEeC---CCcEEEEECCchhH
Q 005254 613 IATYD-KHEDKIWALAVGKKTEMFA-TGGS---DALVNLWHDSTAAE 654 (706)
Q Consensus 613 ~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~---dg~i~vw~~~~~~~ 654 (706)
...+. .-.+.|..+...+++..+. +.+. -+++..||+.+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44444 3345567776666665433 2222 46788888877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0048 Score=45.42 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=67.5
Q ss_pred eEEEEE---ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 444 VGAVAF---SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 444 v~~~~~---~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
|+++++ ..+|.+-|++|+.|..|++|+-.. . .........|++++-... ..++.+..+|+|-+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------------~-~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------------I-VAEITETDKVTSLCSLGG-GRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------------E-EEEEecccceEEEEEcCC-CEEEEEecCCEEEE
Confidence 455554 456678899999999999998542 2 222234456777777766 56888999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEcc-C--C-CEEEEecCCCcEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSP-V--D-QVVITASGDKTIK 561 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~--~-~~l~~~~~dg~i~ 561 (706)
|+- ...+...+. +..++++++.. + | ..|++|-.+|.|-
T Consensus 68 Y~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 68 YDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 974 344444553 33366666544 2 2 3688888888764
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.016 Score=48.70 Aligned_cols=215 Identities=14% Similarity=0.072 Sum_probs=114.3
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCC--CeEEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKL--QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
.+.++.+--..|.|.-||..+.+..+. +... +..++.+--.+ +.+.+.++..-.|--||...... ........
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a--~v~~t~~e 101 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESA--KVYRTLFE 101 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEccccccee--eeeeeccc
Confidence 333455555566777788877654433 2221 12233322211 22444445444455566332110 00000000
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--------CcEEEEEEccCCCEEEE-ecCC
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK--------RGIWSVEFSPVDQVVIT-ASGD 557 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~-~~~d 557 (706)
.. ........+.-.++|+|++.+ |...-.=..+....+.+..-+.+|. .--..++|+.+.+.+.. -+.+
T Consensus 102 v~-~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 102 VQ-PDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cC-chHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCc
Confidence 00 011134456677899999843 3321111122222233333333333 22356889888776654 4556
Q ss_pred CcEEEEE--cCCCc-----eEEEEeec----ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 558 KTIKIWS--ISDGS-----CLKTFEGH----TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 558 g~i~iwd--~~~~~-----~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
-+|.-|| ..+|. .+..++.. .-..-.++...+|.+.++.-..++|...|..+|+.+..+.-....|+++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 7787787 55553 23333321 1112334556678888888888999999999999999999889999999
Q ss_pred EEcC
Q 005254 627 AVGK 630 (706)
Q Consensus 627 ~~s~ 630 (706)
+|--
T Consensus 260 cFgG 263 (310)
T KOG4499|consen 260 CFGG 263 (310)
T ss_pred EecC
Confidence 9953
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9e-06 Score=77.43 Aligned_cols=202 Identities=16% Similarity=0.286 Sum_probs=129.4
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE--EEEEeCCCcCeEEEEEecCCCeEEEEec----CCCeEEEEEe
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSF 471 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~ 471 (706)
.+.|+++....+ +.++++|..+|.|.+-......- -...+++....++++|++-..+.|++|- .|..+.+||+
T Consensus 58 y~kcva~~y~~d-~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCc-hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 455555333333 45588999999999987765432 2334567788999999987666777774 4678999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc-EEEEEeecCCcEEEEEEcc-CCC
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV-SVVTFRGHKRGIWSVEFSP-VDQ 549 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~ 549 (706)
...-..+........ +......++++-.+.+++.+|...+.+.++|++... ....+ ....+..+..+| .+.
T Consensus 137 ~s~ltvPke~~~fs~-----~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSS-----STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPN 209 (783)
T ss_pred ccccCCCcccccccc-----ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCC
Confidence 876322111111111 133345578888899999999999999999987331 11111 223456677888 677
Q ss_pred EEEEecCCCcEEEEEc-CCC-ceEEEEee----cccCEEEEEEEeCCC-EEEEEeCC-CCEEEEECC
Q 005254 550 VVITASGDKTIKIWSI-SDG-SCLKTFEG----HTSSVLRASFLTRGA-QIVSCGAD-GLVKLWTVR 608 (706)
Q Consensus 550 ~l~~~~~dg~i~iwd~-~~~-~~~~~~~~----~~~~i~~~~~s~~~~-~l~~~~~d-g~i~iwd~~ 608 (706)
++++.. ||.|.+||. .+- .++..+.. ....+..++|+|... .|++...| ++|+.+|+.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 777755 999999993 222 22222221 122488899998533 45555554 689999885
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.032 Score=49.05 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=110.5
Q ss_pred eEEcCCCCEEEEeeCC---eEEEEEccCCeEEEeecCCC-ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 25 LVVSSDGSFIACACGE---SINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~---~i~i~d~~~~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+.|..||.++-+.+.. .|+.+|+.+++......-.. --=-.++...| ++..-.-.++...+||..+.+.+.++.-
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y 128 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPY 128 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEec
Confidence 7777777666555432 79999999998765443221 11123333333 3333445688999999999999998874
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-----CCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
. +.=..++ .|++.|+.......|.++|.++.+....+... -..++-+.+. +| .+.|=.-....|...|.
T Consensus 129 ~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 129 P-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIVRIDP 202 (264)
T ss_dssp S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEEEEET
T ss_pred C-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEEEEeC
Confidence 3 4445565 45666777666788999999888777665432 2245667776 23 23555556677888999
Q ss_pred CCCeeEEEeec------------c---cceEEEEEEecCCCEEEEEeC
Q 005254 176 LAKKCVATLDK------------H---FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 176 ~~~~~~~~~~~------------~---~~~v~~~~~~~~~~~l~~~~~ 208 (706)
.+|+....+.- + ..-.+.+++.|....++..|.
T Consensus 203 ~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 203 ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 99998876521 0 235789999988777766653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=43.01 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=34.6
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD 88 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd 88 (706)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=42.60 Aligned_cols=39 Identities=23% Similarity=0.491 Sum_probs=34.9
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0056 Score=62.50 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCCCEEEEeeCCC-----cEEEEeCCCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCC------------------
Q 005254 504 PNDSLVCTGSQDR-----TACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK------------------ 558 (706)
Q Consensus 504 ~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------ 558 (706)
-+|++.+.|+.++ .+..||..+.+-.. .+.........++ -+++..+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3677888888764 37888887653222 1111111111222 2577777777653
Q ss_pred -----cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC------CEEEEECCC-C--eEEEEeccCCCcEE
Q 005254 559 -----TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG------LVKLWTVRT-G--ECIATYDKHEDKIW 624 (706)
Q Consensus 559 -----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iwd~~~-~--~~~~~~~~~~~~v~ 624 (706)
.+..||..+.+-...-.-...........-+|+..+.|+.++ .+..||..+ . +.+..+........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477788766533211111111122223344666667776542 467899886 3 34444444333344
Q ss_pred EEEEcCCCCEEEEEeCCC--cEEEEECCchh
Q 005254 625 ALAVGKKTEMFATGGSDA--LVNLWHDSTAA 653 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~~dg--~i~vw~~~~~~ 653 (706)
...+ +++..++||.|| ++..||+.+.+
T Consensus 508 ~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 4444 788888999888 55556555443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.035 Score=50.08 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=91.0
Q ss_pred ccceEEcCCCCEEEEee--CC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEE-CCCCeEE-
Q 005254 22 GGPLVVSSDGSFIACAC--GE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWD-LSTLKCL- 95 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~--~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~- 95 (706)
....++|+||+.+|+.. ++ .++++... +.....+.+ ..++.-.|++++...+....+...+++. ..+++..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 34799999999999887 44 56666543 222233343 3788899999987777766666666663 3333322
Q ss_pred EEeec--cCCCeEEEEECCCCCEEEEec---CCCcEEEEECC---CC--e----EEEEeeCCCCcEEEEEEcCCCCceEE
Q 005254 96 RSWKG--HDGPAIGMACHPSGGLLATAG---ADRKVLVWDVD---GG--F----CTHYFKGHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 96 ~~~~~--~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~---~~--~----~~~~~~~~~~~v~~~~~~~~~~~~~l 161 (706)
..+.. -...|..+.+||||.++|... .++.|.+=-+. .+ . ...........+..+.|.+++. .++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~V 181 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LVV 181 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EEE
Confidence 12221 122899999999999988865 35777776553 23 1 1122223456889999999865 333
Q ss_pred EEEecCCeEEE
Q 005254 162 FSGSDDATVRV 172 (706)
Q Consensus 162 ~~~~~dg~i~v 172 (706)
+....++.+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 33444443443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.1 Score=50.19 Aligned_cols=281 Identities=15% Similarity=0.176 Sum_probs=145.2
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeE---eCCCCcEEEEEecCCcEEEEeCCCc-----
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKF---LGEEEQYLAVATNIEQVQVYDLSSM----- 386 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~~~~i~~~d~~~~----- 386 (706)
+...+++++..|.+.+|...........+.....+ ..+|..+.. .+..+...++.-.-..+.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34678899999999999986554333344444433 345555543 3433433333355578888877321
Q ss_pred ----eeeEeeeCCcceEEEeeeeeec----CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 387 ----SCSYVLAGHSEIVLCLDTCALS----SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 387 ----~~~~~~~~~~~~i~~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
-.+.....|.-.-.+..+|.-+ .++.++.+-+.||.+.+++-+.-.....+.. .--...+.+.+... .++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sfv 190 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SFV 190 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EEE
Confidence 1222333333332333322322 2346689999999999999877655444443 33344577777755 788
Q ss_pred EecCCCeEEEEEecCCCCCCC-------------cccccceeEEEeecCcceEEE---EEcCCCCEEEEeeCCCcEEEEe
Q 005254 459 SGSSDHTIKVWSFDGLSDDAE-------------QPMNLKAKAVVAAHGKDINSL---AVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 459 ~~~~d~~i~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~---~~s~~~~~l~~~~~dg~i~i~d 522 (706)
+++.+..+.-|.......... ..........+. -+..+..+ .++.....+++-+ ...+...+
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~ 268 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLK 268 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEc
Confidence 888888999998754321111 111111222221 22233333 3332333333333 34566665
Q ss_pred CCCccEEEEEeecCCcEEEEE-Ec----cCC---CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE---eCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVE-FS----PVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL---TRGA 591 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~-~s----~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s---~~~~ 591 (706)
. +|......+ ......+++ |. ..+ ..++.++.++++.||. ..+++........+| ++... .-..
T Consensus 269 ~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~~~~~~G 343 (418)
T PF14727_consen 269 D-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVANFNGLKG 343 (418)
T ss_pred C-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecccCCCCc
Confidence 4 343333322 222222222 11 122 2478888999999986 334433333222232 33322 2233
Q ss_pred EEEEEeCCCCEEEEEC
Q 005254 592 QIVSCGADGLVKLWTV 607 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~ 607 (706)
.|++-+.+|.+.+-=+
T Consensus 344 ~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 344 LIVSLSDEGQLSVSYL 359 (418)
T ss_pred eEEEEcCCCcEEEEEe
Confidence 6666677777666544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00016 Score=60.13 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=67.3
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEE-EeecCCcEEE-EEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-cCE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWS-VEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-SSV 581 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i 581 (706)
-+.-+++|+.+|.|.+|.......... ...-...|.+ +.--.++.+..+++.||.|+.|++..++.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999998762211111 1111122222 2222345688899999999999999888887777776 455
Q ss_pred EEEEEEeCCCEEEEE--eCCCCEEEEECC
Q 005254 582 LRASFLTRGAQIVSC--GADGLVKLWTVR 608 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~--~~dg~i~iwd~~ 608 (706)
..+..+..+++|+.+ +.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 555555556666666 666666666664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00015 Score=60.22 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=87.2
Q ss_pred EEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce-EEEEeecccCEE-EEE
Q 005254 509 VCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC-LKTFEGHTSSVL-RAS 585 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~-~~~ 585 (706)
+..-+.+|.|+-+++...+....- .-+... .....-+..+++|+.+|.|++|...-... ......-...|. .+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 334455677777666543222111 112222 11122356799999999999998752111 111111112222 122
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE--eCCCcEEEEECCchhH
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTEMFATG--GSDALVNLWHDSTAAE 654 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~vw~~~~~~~ 654 (706)
-..++.+..+++.||.|+.|++.-++.+...-.|. .++..+..+..++.++.+ |.|..++.|++..-..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 23345588899999999999999999888887777 666666666677777777 7788888888765543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0072 Score=57.19 Aligned_cols=152 Identities=9% Similarity=0.102 Sum_probs=104.7
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe------EEEEecCCCeEEEEEecCCCCCCCc
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..+.+.++..+.....++-.|++.|+.+.....+.. |+-+.+.|+.+. --+.|-.+..|.-||.+-....
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--- 417 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--- 417 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---
Confidence 345566677888888999999999999999887766 777777776541 1345667888888987643211
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
....... .-........|.+-..+| ++++|+.+|.|++||-........+++-..+|..+..+.+|++|+..+. ..+
T Consensus 418 kl~~~q~-kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 418 KLAVVQS-KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred eeeeeec-cccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEE
Confidence 0000000 011123445677776666 8999999999999997444445567888899999999999999877654 446
Q ss_pred EEEEc
Q 005254 561 KIWSI 565 (706)
Q Consensus 561 ~iwd~ 565 (706)
.+.++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 66654
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.11 Score=49.09 Aligned_cols=193 Identities=14% Similarity=0.172 Sum_probs=100.8
Q ss_pred CCCCEEEEeeCC--eEEEEEccC----CeEEEeecC---CC----ccEEEEEEccCCCEEEEE--e----ccCeEEEEEC
Q 005254 29 SDGSFIACACGE--SINIVDLSN----ASIKSTIEG---GS----DTITALALSPDDKLLFSS--G----HSREIRVWDL 89 (706)
Q Consensus 29 ~dg~~l~~~~~~--~i~i~d~~~----~~~~~~l~~---~~----~~i~~l~~s~~~~~l~s~--~----~d~~i~iwd~ 89 (706)
.+.++|+..+-. .|+|+|+.+ .++.+.++. +. ..-..+-.-|+|+.++++ + ..|.+.+.|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 367888888744 899999873 345555543 11 122334456789999886 2 2457899999
Q ss_pred CCCeEEEEeeccC---CCeEEEEECCCCCEEEEecC--------------------CCcEEEEECCCCeEEEEeeCCC--
Q 005254 90 STLKCLRSWKGHD---GPAIGMACHPSGGLLATAGA--------------------DRKVLVWDVDGGFCTHYFKGHK-- 144 (706)
Q Consensus 90 ~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--------------------d~~i~vw~~~~~~~~~~~~~~~-- 144 (706)
++.+....+.... .--..+.+.|..+.+++... ..++.+||+.+.+.++.+.--.
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 9988888876533 23456788888888888641 3589999999999999887433
Q ss_pred CcEEEEEEcCCCCceEEEEE-ecCCeEEEEEC-CCCe----eEEEeecc-----------------cceEEEEEEecCCC
Q 005254 145 GVVSSILFHPDTDKSLLFSG-SDDATVRVWDL-LAKK----CVATLDKH-----------------FSRVTSMAITSDGS 201 (706)
Q Consensus 145 ~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~-~~~~----~~~~~~~~-----------------~~~v~~~~~~~~~~ 201 (706)
..+..+.|..+-+...-++| .-.+.|..|-- +.++ .+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34667888665443333333 34445555533 3332 12222111 24578999999999
Q ss_pred EEEEEe-CCCEEEEEeCCCCc
Q 005254 202 TLISAG-RDKVVNLWDLRDYS 221 (706)
Q Consensus 202 ~l~~~~-~dg~i~~w~~~~~~ 221 (706)
+|+... ..|.|+.||+.+..
T Consensus 325 fLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTT
T ss_pred EEEEEcccCCcEEEEecCCCC
Confidence 998876 58999999998643
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0029 Score=65.23 Aligned_cols=112 Identities=18% Similarity=0.281 Sum_probs=81.8
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCC-eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTL-KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
++..++..-.+-+++.|+..|.+-..|+... .+...-..-.++|++++|+.||+.++.|-.+|.|.+||...++.++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3344444445678899999999999888653 222222334689999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEEC
Q 005254 141 KGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 141 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~ 175 (706)
..|..+.+.+-++- +++...++++...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88877766665532 122234778777775 5654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.053 Score=47.72 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=117.1
Q ss_pred ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc--eeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE--MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.+....+.++.|+|+.+.|++......-.+|=..+++.+.+++... ....+....++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-------------------- 141 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-------------------- 141 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE--------------------
Confidence 4455669999999999999999988888888888899998887653 344555555442
Q ss_pred cceEEEEecCCCeEEEEECCCCe-EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 263 LEIHFITVGERGIVRMWNADSAC-LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
..++--.++.+.++.++... ............ .......++-.+++.|.+..+.+.-+..-+.+|.....+..-.
T Consensus 142 ---fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~-~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 142 ---FVIVDERDRALYLFTVDADTTVISAKVQKIPLG-TTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred ---EEEEehhcceEEEEEEcCCccEEeccceEEecc-ccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 44455566777777766552 222222211111 2222378899999999999999999999999988875542111
Q ss_pred ---eeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 342 ---ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 342 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
.........-.-..+.++.|.+..+.+++.+..++.+.-.|....
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 111111111223456677777777778877777777776666543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0027 Score=59.95 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=101.8
Q ss_pred cCCCEEE-EEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCE-------EEEecCCCcEEEEECCCC-e-EEEE
Q 005254 70 PDDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL-------LATAGADRKVLVWDVDGG-F-CTHY 139 (706)
Q Consensus 70 ~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------l~~~~~d~~i~vw~~~~~-~-~~~~ 139 (706)
.+..+|. ++.....++--|++.|+.+.+++.+.. |.-+.+.|+.+. -+.|-.+..|+-||.+-. + .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 455566788999999999999998766 888888887642 223456788999998532 1 2222
Q ss_pred eeCC----CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 140 FKGH----KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 140 ~~~~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
..+| .....|.+-..+|. ++.|+.+|.|++||-...+....+++-..+|..+..+.+|++++..+ +..+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~---IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGY---IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCce---EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 2222 33456666665543 99999999999999743344456788889999999999999887765 6667777
Q ss_pred eCC
Q 005254 216 DLR 218 (706)
Q Consensus 216 ~~~ 218 (706)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.093 Score=47.38 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=89.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
.+.+.+++++++.+.+....++.-.+|-...... ..... ....++...|++++...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888999999985555553333334443333211 11111 334678889999988888777677677764
Q ss_pred -CCCccEEE-EEeec--CCcEEEEEEccCCCEEEEec---CCCcEEEEEcC---CC------ceEEEEeecccCEEEEEE
Q 005254 523 -LPDLVSVV-TFRGH--KRGIWSVEFSPVDQVVITAS---GDKTIKIWSIS---DG------SCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 523 -~~~~~~~~-~~~~~--~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~i~~~~~ 586 (706)
..++.... ..... ...|+.+.+||||..+|... .++.|.+--+. .+ ..+.........++.+.|
T Consensus 94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 94 DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 33332221 12211 12899999999999888765 35677776543 22 111222223468899999
Q ss_pred EeCCCEEEEEeCCC
Q 005254 587 LTRGAQIVSCGADG 600 (706)
Q Consensus 587 s~~~~~l~~~~~dg 600 (706)
.+++.+++.+...+
T Consensus 174 ~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 174 SDDSTLVVLGRSAG 187 (253)
T ss_pred cCCCEEEEEeCCCC
Confidence 99998777665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.024 Score=58.06 Aligned_cols=197 Identities=12% Similarity=0.056 Sum_probs=96.4
Q ss_pred CEEEEEeeCC------CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCC
Q 005254 411 KILIVTGSKD------NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAE 479 (706)
Q Consensus 411 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~ 479 (706)
+.+.+.|+.+ ..+..||..+........-....-......-+++ +.+.|+.++ .+..||.....-
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W--- 379 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDT-IYAIGGQNGTNVERTIECYTMGDDKW--- 379 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCE-EEEECCcCCCCCCceEEEEECCCCeE---
Confidence 3446667643 3477888877754332221111111122223444 666777653 477788664321
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-----------------------cEEEEeCCCccEEEEEeecC
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----------------------TACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~ 536 (706)
.....+.........+ .-+|++.+.|+.++ .+..||..+.+-...-.-..
T Consensus 380 -----~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 380 -----KMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred -----EECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 1111111011111111 23677778887653 46678876653322111111
Q ss_pred CcEEEEEEccCCCEEEEecCC------CcEEEEEcCC-C--ceEEEEeecccCEEEEEEEeCCCEEEEEeCCC--CEEEE
Q 005254 537 RGIWSVEFSPVDQVVITASGD------KTIKIWSISD-G--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADG--LVKLW 605 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iw 605 (706)
.....-+..-+++..+.|+.+ ..+..||..+ . ..+..+........ .-.-+|+..++|+.+| .+..|
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhc
Confidence 111111122246777777654 2467899876 3 33333432222222 2223778888999888 77788
Q ss_pred ECCCCeEEEEeccCC
Q 005254 606 TVRTGECIATYDKHE 620 (706)
Q Consensus 606 d~~~~~~~~~~~~~~ 620 (706)
|+.+.+-......|.
T Consensus 531 d~~~~~W~~~~~~~~ 545 (557)
T PHA02713 531 NVYTYEWNHICHQHS 545 (557)
T ss_pred CcccccccchhhhcC
Confidence 887776544444443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.1 Score=46.02 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=111.9
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECCCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~ 134 (706)
+.|-...|.++.|+|+.+.|.+....+.-.||=...|+.++++.-. -.....+.+..++++.++--.++.+.++.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555667999999999999999988888889988899999987532 234456888889988888778888988888665
Q ss_pred eEEEEe----------eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecc-------cceEEEE
Q 005254 135 FCTHYF----------KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKH-------FSRVTSM 194 (706)
Q Consensus 135 ~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-------~~~v~~~ 194 (706)
..+..+ ...+.....++|.|.... ++.+-+-.-+.|+.+..... ......+ -..+.++
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~--l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR--LFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCce--EEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 322211 112566889999998776 66666666677776653221 1111111 2356778
Q ss_pred EEecC-CCEEEEEeCCCEEEEEeCCC
Q 005254 195 AITSD-GSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 195 ~~~~~-~~~l~~~~~dg~i~~w~~~~ 219 (706)
.|.+. +.+|+-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 88764 55666666777777777654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.13 Score=47.10 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=81.4
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc-CCC
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI-SDG 568 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~ 568 (706)
.......+..+..++||++++++.......-||--...-...-+.....|..|.|+|++.+.+.+ ..|.|+.=+. ...
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34445678888999999999988766666678754332333333456889999999998776654 8888888772 122
Q ss_pred ceEEE----EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 569 SCLKT----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 569 ~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
+.-.. +....-.+..++|.+++...++|+. |.+. .....|+--..-+ .-......+.|.++.+-+ +.+.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~ 295 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQD 295 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-ST
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCC
Confidence 21111 1112234788999988777776654 5443 3444554333332 335568889887665444 46779
Q ss_pred CcEEEE
Q 005254 642 ALVNLW 647 (706)
Q Consensus 642 g~i~vw 647 (706)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 988766
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.039 Score=56.34 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=116.7
Q ss_pred CCEEEEEeeCCC------cEEEEeCCCceEEEEEeCCCc-CeEEEEEecCCCeEEEEecCC------CeEEEEEecCCCC
Q 005254 410 GKILIVTGSKDN------SVRLWDSESRCCVGVGTGHMG-AVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSD 476 (706)
Q Consensus 410 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~ 476 (706)
...+++.|+.++ .+..+|..+++.......... .-.++++..+ . +.++|+.| .++..||.....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~-~-lYv~GG~~~~~~~l~~ve~YD~~~~~- 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG-K-LYVVGGYDSGSDRLSSVERYDPRTNQ- 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC-E-EEEEccccCCCcccceEEEecCCCCc-
Confidence 344567777663 577888887754443322222 2333444443 3 78888888 345566665442
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc-----EEEEeCCCccEEEE--EeecCCcEEEEEEccCCC
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-----ACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~ 549 (706)
+.....+........ ...-+|.+.|+|+.||. +..||..+.+-... +.......-.. .-+|.
T Consensus 361 -------W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~ 429 (571)
T KOG4441|consen 361 -------WTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGK 429 (571)
T ss_pred -------eeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCE
Confidence 111111111111111 11226888899998874 66777665432221 11111111122 22577
Q ss_pred EEEEecCCC------cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCC-----EEEEECCCCeEEEE--e
Q 005254 550 VVITASGDK------TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGL-----VKLWTVRTGECIAT--Y 616 (706)
Q Consensus 550 ~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~--~ 616 (706)
..++|+.++ ++..||..+++-...-.........-.-.-++...+.||.|+. |..||..+.+-... .
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 778888654 4678887766433221111111111133346777888888763 77788877654322 2
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCc-----EEEEECCch
Q 005254 617 DKHEDKIWALAVGKKTEMFATGGSDAL-----VNLWHDSTA 652 (706)
Q Consensus 617 ~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~vw~~~~~ 652 (706)
......+....+ +++..++|+.||. |..||..+.
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 233333333333 6677778887764 455554443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.12 Score=45.26 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCc-EEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRT-ACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~ 525 (706)
...++++..+++.+.+|++..--. -...-..++++|.- .-++.+-.-|+ ..++|...
T Consensus 42 f~~~dgs~g~a~~~eaGk~v~~~~---------------------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~ 100 (366)
T COG3490 42 FDARDGSFGAATLSEAGKIVFATA---------------------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNG 100 (366)
T ss_pred eeccCCceeEEEEccCCceeeeee---------------------cccccCCeecCCCCcceEEEEecCCceEEEECCCC
Confidence 344566766777777776543110 11122356777743 44555555555 56788887
Q ss_pred ccEEEEEeecCCc--EEEEEEccCCCEEEEecCC-----CcEEEEEcCCC-ceEEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 526 LVSVVTFRGHKRG--IWSVEFSPVDQVVITASGD-----KTIKIWSISDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 526 ~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
......+...++. --.=.|||||.+|...-.| |.|-|||...+ +.+.++..|.-..-.+.+.+||+.|+.+.
T Consensus 101 ~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 101 AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 7766655432221 1224799999999876443 67999998754 45677888877778899999999988764
Q ss_pred C------C-C-----------CEEEEECCCCeEEEEec----cCCCcEEEEEEcCCCCEEEEEe
Q 005254 598 A------D-G-----------LVKLWTVRTGECIATYD----KHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 598 ~------d-g-----------~i~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
. | | .+.+.|..+|+.+.+.. .+...|..++..+||+.++.+-
T Consensus 181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 3 1 1 23445555666554332 3455688888888887666443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0026 Score=65.55 Aligned_cols=101 Identities=14% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc-cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEE
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL-VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 583 (706)
.+..++.|+..|.+...|.... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999998887653 211222224678999999999999999999999999999999999988877776655
Q ss_pred EEE---EeCCCEEEEEeCCCCEEEEEC
Q 005254 584 ASF---LTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 584 ~~~---s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+-+ ..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 445667888888775 4543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.6 Score=49.35 Aligned_cols=192 Identities=11% Similarity=0.094 Sum_probs=106.6
Q ss_pred eeccceEEcCCCCEEEEeeCC------eEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEecc------CeEEE
Q 005254 20 YGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHS------REIRV 86 (706)
Q Consensus 20 ~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~i 86 (706)
+.-+.+.+||||++|+++.+. .|++.|+.+++.+. .+.+ .. ..++|++|++.|+....+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 334468899999999999763 49999999887432 2222 22 459999999877655332 46888
Q ss_pred EECCCC--eEEEEeeccCCCeE-EEEECCCCCEEEEec---CCCcEEEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 87 WDLSTL--KCLRSWKGHDGPAI-GMACHPSGGLLATAG---ADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 87 wd~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~---~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
+++.++ +-...+........ .+..+.|+++++..+ .++.+.+++.. ++.....+.........+. +. ++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCE
Confidence 899887 33334443333333 344455888877643 34678898852 3432222222222222222 22 344
Q ss_pred eEEEEEe--cCCeEEEEECCCCeeEEEeecc-c-ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 159 SLLFSGS--DDATVRVWDLLAKKCVATLDKH-F-SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 159 ~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
.++.+-. ....|...++........+-.+ . ..+..+.+. .+.++++...+|.-+++-+
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3333322 2234444455421122233333 2 367778777 3345566666776555544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0038 Score=38.02 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC 94 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 94 (706)
...|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5544
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.17 Score=51.78 Aligned_cols=228 Identities=16% Similarity=0.124 Sum_probs=113.6
Q ss_pred CCcEEEEEecC------CcEEEEeCCCceeeEeeeCCcc-eEEEeeeeeecCCCEEEEEeeCC-C-----cEEEEeCCCc
Q 005254 365 EEQYLAVATNI------EQVQVYDLSSMSCSYVLAGHSE-IVLCLDTCALSSGKILIVTGSKD-N-----SVRLWDSESR 431 (706)
Q Consensus 365 ~~~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~ 431 (706)
.+.++++|+.. ..+..||..+........-... .-.++ ...++ .+.++|+.| | ++..||..++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~---~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGV---AVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccE---EEECC-EEEEEccccCCCcccceEEEecCCCC
Confidence 34556666555 3577788877643322221111 11122 22233 557888888 3 5778888877
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe-----EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT-----IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
+......-...+...-...-+|. +.++|+.||. +..||.....-....++. . ..-..-...-+|
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--------~--~r~~~gv~~~~g 428 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--------T--RRSGHGVAVLGG 428 (571)
T ss_pred ceeccCCccCccccceeEEECCE-EEEEeccccccccccEEEecCCCCcccccCCCC--------c--ceeeeEEEEECC
Confidence 75543222222221111122333 7888888864 555665543211111110 0 001111223368
Q ss_pred CEEEEeeCCC------cEEEEeCCCccEE--EEEeecCCcEEEEEEccCCCEEEEecCCCc-----EEEEEcCCCceEEE
Q 005254 507 SLVCTGSQDR------TACVWRLPDLVSV--VTFRGHKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLKT 573 (706)
Q Consensus 507 ~~l~~~~~dg------~i~i~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~ 573 (706)
++.++|+.++ ++..||..+.+-. ..+........ ++ .-++.+.+.|+.|+. |..||..+.+-...
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 8888888654 4677887665332 22222112222 22 225778888887763 77788776544322
Q ss_pred --EeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCe
Q 005254 574 --FEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGE 611 (706)
Q Consensus 574 --~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 611 (706)
+......+- ...-+++..++|+.|| +|..||..+.+
T Consensus 507 ~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 507 APMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 221222221 1223566777888776 46667666554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.44 Score=45.25 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=88.5
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEE-EECCCCe-EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRV-WDLSTLK-CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~i-wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
...+.++.+.|++.+++++ ..|.+.. +| ..++ -......-...+.++.+.++++.++++ ..|.+.+=..+.|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4578999999998777655 4454432 22 1222 111222345788999999999877765 4576543234454432
Q ss_pred EEeeC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCC
Q 005254 138 HYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 138 ~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
..... ....+..+.+.|++. ++.++.+|.+. .....++.-...+ .-......+.|..+++. +..+..|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G 323 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRG 323 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC---EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCc
Confidence 22211 224578899998654 56666777554 4445555443332 22235777777766654 5566788
Q ss_pred EEEEEeC
Q 005254 211 VVNLWDL 217 (706)
Q Consensus 211 ~i~~w~~ 217 (706)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.17 Score=47.84 Aligned_cols=194 Identities=10% Similarity=0.110 Sum_probs=92.7
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---cC----cceEEEEEcCCCCEEEEee--C----CCcEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HG----KDINSLAVAPNDSLVCTGS--Q----DRTACV 520 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~--~----dg~i~i 520 (706)
+.+++-+-..+.|++.|+......+ +...+... +. .....+-.-|+|++++++- . -|-+.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKP------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCCC------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence 3344555578999999987543221 12222221 00 1123344457888888742 2 245888
Q ss_pred EeCCCccEEEEEeecCC---cEEEEEEccCCCEEEEecC--------------------CCcEEEEEcCCCceEEEEeec
Q 005254 521 WRLPDLVSVVTFRGHKR---GIWSVEFSPVDQVVITASG--------------------DKTIKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~ 577 (706)
+|-++.+.......... --..+-|.|..+.+++... ..++.+||+.+.+.++++.--
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 88888777776654322 2356777888888887643 357999999999999998743
Q ss_pred c--cCEEEEEEEeC--CCEEEEEe-CCCCEEEE-ECCCCe----EEEEeccC-----------------CCcEEEEEEcC
Q 005254 578 T--SSVLRASFLTR--GAQIVSCG-ADGLVKLW-TVRTGE----CIATYDKH-----------------EDKIWALAVGK 630 (706)
Q Consensus 578 ~--~~i~~~~~s~~--~~~l~~~~-~dg~i~iw-d~~~~~----~~~~~~~~-----------------~~~v~~~~~s~ 630 (706)
. .....+.|..+ ..+=++++ -..+|..| .-..++ .+..+... ..-|+.|..|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 3 23556777654 33433322 23334433 334443 22222210 23478999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCchh
Q 005254 631 KTEMFATGG-SDALVNLWHDSTAA 653 (706)
Q Consensus 631 ~~~~l~~~~-~dg~i~vw~~~~~~ 653 (706)
|+++|.... .+|.++.||+++..
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CCCEEEEEcccCCcEEEEecCCCC
Confidence 999987655 48999999998864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.33 Score=42.96 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=114.0
Q ss_pred CeEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
-...+.|..++. ++-+.+.-| .|+.+|+.+++.. ........---..++.. ++++....-.++...+
T Consensus 46 FTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~---------~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVL---------QSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEE---------EEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred cCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEE---------EEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 344577767665 666776666 6777777765311 11111111122334444 3344455567899999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 595 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~ 595 (706)
||..+.+.+.++.- ...=..++ .|++.|+.+.....++.+|..+.+..+.+.... ..++-+.+. +|...|-
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 99999999988864 45556677 467778877777889999998888777765432 346667775 6777777
Q ss_pred EeCCCCEEEEECCCCeEEEEecc------------C---CCcEEEEEEcCCCCEEEEEe
Q 005254 596 CGADGLVKLWTVRTGECIATYDK------------H---EDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~~~~s~~~~~l~~~~ 639 (706)
.-....|...|..+|+.+..+.. + .+-.+.|++.|....|...|
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77778899999999999887641 1 24578999988776655444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.28 Score=41.59 Aligned_cols=104 Identities=10% Similarity=0.074 Sum_probs=71.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
--..++|+.+.+.+.++-+.+-.|.-||.+-.......+...-....... .....-.+++..+|++.++.-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34568898888878888888999988885433222211111111110000 11123345667789999999999999999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEcc
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSP 546 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~ 546 (706)
|..+++.+..++-....|++++|--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999998899999999974
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.45 Score=43.78 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=70.8
Q ss_pred eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEE-CCC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD-LLA 177 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~ 177 (706)
..-.+.+..+.-++||++++++.......-||.....-...-+....+|..|.|.|++. +......|.|++=+ ...
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~---lw~~~~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN---LWMLARGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEEEETTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCC---EEEEeCCcEEEEccCCCC
Confidence 34457889999999999999987766666888654333333344678999999999855 44455888888877 222
Q ss_pred CeeEEE--e--ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec----CcceeeeEEeeCCC
Q 005254 178 KKCVAT--L--DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP----TYEMVEAVCAIPPG 241 (706)
Q Consensus 178 ~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~ 241 (706)
.+.... . ....-.+..++|.+++...++++ .|.+ +...+.++.-...+ .......+.|..+.
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC
Confidence 222111 1 11223478999998876666554 5543 33445554433332 23445666665543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0067 Score=36.96 Aligned_cols=35 Identities=6% Similarity=0.208 Sum_probs=30.5
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
....|..++|+|...+||.+..+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5544
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.92 Score=44.36 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=51.9
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-CcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-GVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+|.++.+...|. +-+|+.|| +..||..+++.++.-.... .+|..+.-.-.+. +..|+.+| |.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 457888999998885 55567777 7888998888777655443 6666666665554 88888888 77777654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.18 Score=52.07 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=86.0
Q ss_pred EEEEEeeCCC------cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCc
Q 005254 412 ILIVTGSKDN------SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 412 ~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~ 480 (706)
.+++.|+.++ .+..||..+.+..................-++. +.+.|+.+ ..+..||.....-....
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR-IYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCE-EEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 3456665432 467788877665432211111111111222334 66677655 34666666543211100
Q ss_pred ccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEE
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~ 552 (706)
+ ....... .++ ..-++++.+.|+.+ ..+..||..+.+-... +....... + +...++...+
T Consensus 375 ~--------lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv 442 (534)
T PHA03098 375 P--------LIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYV 442 (534)
T ss_pred C--------cCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEE
Confidence 0 0001111 112 22366777777732 3578888876533221 11111111 1 2223566667
Q ss_pred EecCCC--------cEEEEEcCCCceEEE--EeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 553 TASGDK--------TIKIWSISDGSCLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 553 ~~~~dg--------~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.|+.++ .+.+||..+++-... +........ ....+++.++.|+.+ ..+.+||..+.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINAS--LCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccce--EEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 776432 388889876543221 111111111 122366777777654 467888887654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.71 Score=44.63 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=88.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEE-EEccCCeE--EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-----EE
Q 005254 24 PLVVSSDGSFIACACGESINI-VDLSNASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-----CL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i-~d~~~~~~--~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-----~~ 95 (706)
.+..++||.+++++..+.+.. || .++. ...-......++++.+.+++.+++++ ..|.+ +|....++ ..
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f 318 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDF 318 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccce
Confidence 467789999999999886543 44 2321 22222345678999999999887765 45554 44444543 22
Q ss_pred EEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---eCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 96 RSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF---KGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 96 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..... ....+..+.|.+++..+++| ..|.+.... +.|+.-... ..-......+.|.++++ .+..+.+|.|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---g~~~G~~G~i 393 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK---GFVLGNDGVL 393 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc---eEEEeCCcEE
Confidence 22221 22458999999988877665 567665553 455443332 23356788999987655 6667778877
Q ss_pred EEE
Q 005254 171 RVW 173 (706)
Q Consensus 171 ~vw 173 (706)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.25 Score=51.04 Aligned_cols=184 Identities=10% Similarity=0.088 Sum_probs=88.3
Q ss_pred CCCCEEEEeeC-------CeEEEEEccCCeEEEe--ecCCCccEEEEEEccCCCEEEEEecc-----CeEEEEECCCCeE
Q 005254 29 SDGSFIACACG-------ESINIVDLSNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTLKC 94 (706)
Q Consensus 29 ~dg~~l~~~~~-------~~i~i~d~~~~~~~~~--l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~~~ 94 (706)
.++.++++|+. +.+..||+.+++-... +........++ .-++++.+.||.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 45556666543 1478899887765321 11111122222 2357777777754 3577888876542
Q ss_pred EE--EeeccCCCeEEEEECCCCCEEEEecCC------CcEEEEECCCCeEEEEeeCCCCc-EEEEEEcCCCCceEEEEEe
Q 005254 95 LR--SWKGHDGPAIGMACHPSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 95 ~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~ 165 (706)
.. .+....... ++ ..-+++..+.||.+ ..+..||+.+++-...-...... -.+++.. + +. +++.|+
T Consensus 371 ~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-~~-iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-D-GK-IYVIGG 445 (534)
T ss_pred eeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-C-CE-EEEECC
Confidence 21 121111111 12 22356666777632 45888998876533221101111 1122222 2 23 355554
Q ss_pred cC--------CeEEEEECCCCeeEEE--eecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 166 DD--------ATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 166 ~d--------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
.+ ..+.+||..+++-... +....... +++ ..+++.++.||.+ +.+.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32 2388888877653321 11111111 121 2266666676654 467788877654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.63 Score=39.53 Aligned_cols=110 Identities=16% Similarity=0.298 Sum_probs=68.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEcc--CCeEEEeecCCCccEEEEEEccCCCEEEEEec---cC---eEEEE-ECCC---
Q 005254 24 PLVVSSDGSFIACACGESINIVDLS--NASIKSTIEGGSDTITALALSPDDKLLFSSGH---SR---EIRVW-DLST--- 91 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~--~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~---d~---~i~iw-d~~~--- 91 (706)
++.-++.+.+++++.+..|.+|++. ..+.+..+.. -+.|..++++..|+||++--. .. .+++| ||..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3444443444455667799999987 3345566653 478999999999999999733 22 56664 3321
Q ss_pred -CeEEE-Eeec---------------------cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 92 -LKCLR-SWKG---------------------HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 92 -~~~~~-~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+++ ++-| -+.++.+++--|-...|++|+ ++.+.+|.+..+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 12222 1112 234667788888555566665 4678999876443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.32 Score=49.83 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=99.0
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEE------ee--c--------------CCCccEEEEEEcc--CCCEEEEEec
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKS------TI--E--------------GGSDTITALALSP--DDKLLFSSGH 80 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~------~l--~--------------~~~~~i~~l~~s~--~~~~l~s~~~ 80 (706)
.+++. +.+++++.++.|.||++....... .+ . .....|+.|.... +...|+.|.+
T Consensus 44 talsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D 122 (717)
T PF08728_consen 44 TALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD 122 (717)
T ss_pred eEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec
Confidence 34444 899999999999999986433211 11 0 0123466666554 4478889999
Q ss_pred cCeEEEEECCC-------C----e---------EEEEeeccCCCeEEEEEC--CCCCEEEEecCCCcEEEEECCCC--eE
Q 005254 81 SREIRVWDLST-------L----K---------CLRSWKGHDGPAIGMACH--PSGGLLATAGADRKVLVWDVDGG--FC 136 (706)
Q Consensus 81 d~~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~vw~~~~~--~~ 136 (706)
||.|.+|.+++ . + +...+. -......+++. ...++||+++....|.||-.... +.
T Consensus 123 dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 123 DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF 201 (717)
T ss_pred CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc
Confidence 99999997631 0 0 111222 34578889998 78889999888888888765432 21
Q ss_pred EEE-eeCCCCcEEEEEEcCCCC---c-eEEEEEecCCeEEEEEC
Q 005254 137 THY-FKGHKGVVSSILFHPDTD---K-SLLFSGSDDATVRVWDL 175 (706)
Q Consensus 137 ~~~-~~~~~~~v~~~~~~~~~~---~-~~l~~~~~dg~i~vwd~ 175 (706)
... -..|...|.+++|.++.. + ..+++++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 113677899999988652 1 36888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.097 Score=55.04 Aligned_cols=143 Identities=10% Similarity=0.069 Sum_probs=93.7
Q ss_pred CcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccEEE-----EEeec------CCcEEEEEEccCCC-EEEEecCCCc
Q 005254 494 GKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVV-----TFRGH------KRGIWSVEFSPVDQ-VVITASGDKT 559 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~-----~~~~~------~~~v~~~~~s~~~~-~l~~~~~dg~ 559 (706)
.-++..+...+|+...++... +-.|..||+++..... -+..| ..-..++.|.|.-. ..+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345667777888766655433 3368899987643221 11212 22346778888543 3566678888
Q ss_pred EEEEEcCCCce-EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 005254 560 IKIWSISDGSC-LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM 634 (706)
Q Consensus 560 i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 634 (706)
|++..+.-... ...+. -....++++|+|.|+.++.|-..|++.-|.. +++....+.. ....|.++.|-....+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99887753322 22222 4457899999999999999999999999975 4554444432 2467899999877777
Q ss_pred EEEE
Q 005254 635 FATG 638 (706)
Q Consensus 635 l~~~ 638 (706)
+++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 7653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.5 Score=46.35 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=74.6
Q ss_pred ccEEEEEEccCC----CEEEEEeccCeEEEEECC-----CCeEEEEeecc---CCC--eEEEEECCCCCEEEEecCCCcE
Q 005254 61 DTITALALSPDD----KLLFSSGHSREIRVWDLS-----TLKCLRSWKGH---DGP--AIGMACHPSGGLLATAGADRKV 126 (706)
Q Consensus 61 ~~i~~l~~s~~~----~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~~---~~~--v~~~~~s~~~~~l~~~~~d~~i 126 (706)
.-|..+.|+|-+ ..|.+......|.||.+. +.+.+..-..+ .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 458899999953 344445667799999885 23333322211 111 2357899999988887655544
Q ss_pred EEEECC--CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 127 LVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 127 ~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
.+.++. +.+....+ ...+.|.|.+|.+||++.+++.|+. =.-++||-..
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSs-LHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSS-LHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCe-EEEEEecCch
Confidence 556653 33444444 3678899999999999877777763 3467898543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=2 Score=44.04 Aligned_cols=252 Identities=11% Similarity=0.145 Sum_probs=121.7
Q ss_pred eCCCCcEEEEEecCCcEEEEeCCCcee--eEeeeCC-cceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEE
Q 005254 362 LGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGV 436 (706)
Q Consensus 362 ~~~~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~-~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~ 436 (706)
...+...++.+..+|.+....+..... ....-+. .....++. ...++..+++.|+.-| .+..|....-+.+..
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~--~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~ 295 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLT--YLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDS 295 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEE--EESTT--EEEEEESSS-EEEEEEESESEEEEEE
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEE--EEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEe
Confidence 445778899999999999988765442 1111112 33334443 4444433466666554 455555444444444
Q ss_pred EeCCCcCeEEEEEecC---CC-------eEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeec--CcceEEEEE
Q 005254 437 GTGHMGAVGAVAFSKK---LQ-------NFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAV 502 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~---~~-------~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~ 502 (706)
+. .-++|..+++.+. +. .++++++ .+|.+++..-.-.. . ......... -..+..+..
T Consensus 296 ~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~-------~-~~~~~~~~l~~v~~iW~l~~ 366 (504)
T PF10433_consen 296 LP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGI-------E-GLELASSELPGVTGIWTLKL 366 (504)
T ss_dssp E-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEE-------E---EEEEEEESTEEEEEEE-S
T ss_pred cc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCc-------e-eeeeeccCCCCceEEEEeee
Confidence 43 4578888887532 22 2344433 57888887542110 0 001111111 122333333
Q ss_pred cC-CCCEEEEeeCCCcEEEEeCC---CccEEEEEe--e---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 503 AP-NDSLVCTGSQDRTACVWRLP---DLVSVVTFR--G---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 503 s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~--~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.. +..+|+....+ .-+++.+. ..+.+.... + ....+.+-.+. +..++=....+ |++.+...++....
T Consensus 367 ~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~~~~~~ 442 (504)
T PF10433_consen 367 SSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDGKLTQE 442 (504)
T ss_dssp SSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSSTSEEEE
T ss_pred cCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCCeEEEE
Confidence 22 24566666654 44555553 233332221 1 11122222222 44444444444 88888887777776
Q ss_pred Eeeccc-CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-----cCCCcEEEEEEcC
Q 005254 574 FEGHTS-SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD-----KHEDKIWALAVGK 630 (706)
Q Consensus 574 ~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 630 (706)
+....+ .|.+.+. ++.+++.+..++.+..+.+.......... .....|.|+...|
T Consensus 443 w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 443 WKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 654333 3433333 45678777788999999988776643332 1467888888765
|
... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0033 Score=63.37 Aligned_cols=170 Identities=17% Similarity=0.282 Sum_probs=100.0
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC---CCCEEEEeeC
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQ 514 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~ 514 (706)
++..+.+..+.|....-..+. ..-|.+.+|++.-......... ..........++.-+.|.| +.-++..+..
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l---~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQL---EVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccce---EEeecCcCCCCcceeeecccccccceeeeccC
Confidence 455667777776543221222 3346788999875322211111 1222223334444455544 6678888889
Q ss_pred CCcEEEEeCCCccEEEEEeecCCcEEEEE-----------EccCCCEEEEecCCCcEEEEEcC-----CCceEEEEeecc
Q 005254 515 DRTACVWRLPDLVSVVTFRGHKRGIWSVE-----------FSPVDQVVITASGDKTIKIWSIS-----DGSCLKTFEGHT 578 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-----------~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~ 578 (706)
++++++....+... ..+++|...++.++ .||||..++.++.||.++.|.+. .-.|+...+.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999877655433 34455776665543 68999999999999988888653 335666777776
Q ss_pred c-CEEEEEEEeCC---------CEEEEEeC-CCCEEEEECCCCeEE
Q 005254 579 S-SVLRASFLTRG---------AQIVSCGA-DGLVKLWTVRTGECI 613 (706)
Q Consensus 579 ~-~i~~~~~s~~~---------~~l~~~~~-dg~i~iwd~~~~~~~ 613 (706)
+ +-.|..+..+. .++++++. +..+++|.-...+|+
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 33232233221 13444443 457899988777766
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.6 Score=42.43 Aligned_cols=274 Identities=11% Similarity=0.088 Sum_probs=146.1
Q ss_pred CCCcEEEEEecCCcEEEEeCCCcee----eEeeeCCcceEEEeeeeee-cCCCEEEEEeeCCCcEEEEeCCC--ce----
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSC----SYVLAGHSEIVLCLDTCAL-SSGKILIVTGSKDNSVRLWDSES--RC---- 432 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~--~~---- 432 (706)
.+...+++|+..|.+++|+...... ...-..-..+|..+..-.+ +....+.++--.-..+.+|.+.. +.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 4667899999999999999865331 2222234457777664332 22222122334556677776521 11
Q ss_pred ---EEEEEeCCCc--CeEEEEEec----CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 433 ---CVGVGTGHMG--AVGAVAFSK----KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 433 ---~~~~~~~~~~--~v~~~~~~~----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.+.....|.- ....+++-| .++.++.+-+.||.+.+|+-+.. ........---...+.+.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-----------~f~~~lp~~llPgPl~Y~ 183 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-----------AFSRFLPDFLLPGPLCYC 183 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-----------EEEEEcCCCCCCcCeEEe
Confidence 1222222222 222333333 33568999999999999987643 111222222334567888
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCc--------------------cE---EEEEeecCCcEEE---EEEccCCCEEEEecCC
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDL--------------------VS---VVTFRGHKRGIWS---VEFSPVDQVVITASGD 557 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~--------------------~~---~~~~~~~~~~v~~---~~~s~~~~~l~~~~~d 557 (706)
+.-..+++++.+..+.-|....- +. ..++. -...+.. +.++.....+++-++
T Consensus 184 ~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLge- 261 (418)
T PF14727_consen 184 PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGE- 261 (418)
T ss_pred ecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEec-
Confidence 88888898888888888865211 00 00111 1122222 333333333444333
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEe----CC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE--
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLT----RG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV-- 628 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 628 (706)
.++.+.+. +|......+-.-.+.....|.. ++ ..++.++.++.+.||. ..+.+...+....+| ++..
T Consensus 262 r~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PV-al~v~~ 337 (418)
T PF14727_consen 262 RSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPV-ALSVAN 337 (418)
T ss_pred ceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCE-EEEecc
Confidence 34666664 4544333321112222222222 22 2488899999999996 455555554433343 3333
Q ss_pred -cCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 629 -GKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 629 -s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
..-...|++-+.+|.+.+-=+.+...
T Consensus 338 ~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 338 FNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 23355788899999998876666543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.74 Score=46.53 Aligned_cols=183 Identities=8% Similarity=0.014 Sum_probs=84.7
Q ss_pred CEEEEEeeCCC-----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccc
Q 005254 411 KILIVTGSKDN-----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 411 ~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~ 483 (706)
+.++++|+.++ .+..||..+++..................-++. +.+.|+.+ ..+..|+.....
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~-iYviGG~~~~~sve~ydp~~n~-------- 342 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNK-LYVVGGLPNPTSVERWFHGDAA-------- 342 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCE-EEEECCcCCCCceEEEECCCCe--------
Confidence 44466676543 466788877655443222211111112223444 66667653 346667654321
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCC---cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR---TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
+.....+..... ......-+|+..+.|+.++ .+..||..+.+-... +....... ++ ..-+++..+.|+
T Consensus 343 W~~~~~l~~~r~--~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG--- 415 (480)
T PHA02790 343 WVNMPSLLKPRC--NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR--- 415 (480)
T ss_pred EEECCCCCCCCc--ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---
Confidence 111111110111 1112233677778887654 467788765533221 11111111 12 223466666663
Q ss_pred cEEEEEcCCCceE--EEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 559 TIKIWSISDGSCL--KTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 559 ~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.+.+||..+++-. ..+....... -+..-+|+..+.||.+ ..+..||..+++
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4778888765432 2222111112 2223467777777754 246666666544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.34 Score=46.89 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=82.4
Q ss_pred cceEEEEEcCCCCEEEEee-----------CCC-cEEEEeCCC--cc--EEEEEeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 495 KDINSLAVAPNDSLVCTGS-----------QDR-TACVWRLPD--LV--SVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ |+++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3457899999999887753 223 677776543 22 233444344456889999988 44444444
Q ss_pred cEEEEEcCCC-----c--eE-EEEee----cccCEEEEEEEeCCCEEEEEeCC-------------------CCEEEEEC
Q 005254 559 TIKIWSISDG-----S--CL-KTFEG----HTSSVLRASFLTRGAQIVSCGAD-------------------GLVKLWTV 607 (706)
Q Consensus 559 ~i~iwd~~~~-----~--~~-~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-------------------g~i~iwd~ 607 (706)
..++.|.... + .+ ..+.. +......+.|.|||.+.++.+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344211 1 11 12222 12346789999999876655421 44556666
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
.+++......++ .....++|+++|+++++-..+
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 555432222232 335689999999887764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.1 Score=39.76 Aligned_cols=266 Identities=12% Similarity=0.053 Sum_probs=149.2
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc---eEEEEEeCCC
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR---CCVGVGTGHM 441 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~ 441 (706)
.++++..+..+..++++|+.+......+..-.- ...+.++.-.++. ..++..+.-+.+.|+.+. +.........
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~vsGn~-aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYVSGNY-AYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEecCCE-EEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 456788888889999999987665433322111 0222224445666 555665555666776543 4444555555
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
..-..++.+.+ +...+..|+-+.+-|+...... ........+..+.++..+++..+++... --+.+-
T Consensus 172 ~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sP--------vli~~~n~g~g~~sv~vsdnr~y~vvy~--egvliv 238 (370)
T COG5276 172 GDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSP--------VLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIV 238 (370)
T ss_pred CCceeEEEecC---eEEEEEeCCCeEEEEccCCCCC--------eEEEEEecCCceEEEEecCCeeEEEEcc--cceEEE
Confidence 66667777765 6677778899999999865311 1111122233677888887766666553 337777
Q ss_pred eCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce---EEEEeecccCEEEEEEEeCCCEEEEE
Q 005254 522 RLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASFLTRGAQIVSC 596 (706)
Q Consensus 522 d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~ 596 (706)
|..+.+....+.. ...++.--.+.-.+++...+..+.-+.+-|+++..- ...+......-..+.. -+.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEec
Confidence 7766654333332 222221112333467777777777777778764321 1122111111222222 34455555
Q ss_pred eCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 597 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
..+ ...+-+....+......+....+.+.+.+-+.+.+-+...++-+.+|+.
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 444 4555555444433333333444555555556677888888999999985
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.55 Score=45.50 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=57.2
Q ss_pred ccceEEcCCCCEEEEee-------------CCeEEEEEccC--CeE--EEeecCCCccEEEEEEccCCCEEEEEeccCeE
Q 005254 22 GGPLVVSSDGSFIACAC-------------GESINIVDLSN--ASI--KSTIEGGSDTITALALSPDDKLLFSSGHSREI 84 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~-------------~~~i~i~d~~~--~~~--~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i 84 (706)
..+|+|.++|+++++-. ++.|.+++-.+ |+. ...+...-.....+++.++| +++ +... .|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~-~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP-DI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-eE
Confidence 44799999999887742 23787776543 332 23333333456889999999 444 4444 44
Q ss_pred EEE-ECCC-----Ce--EE-EEeec----cCCCeEEEEECCCCCEEEEec
Q 005254 85 RVW-DLST-----LK--CL-RSWKG----HDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 85 ~iw-d~~~-----~~--~~-~~~~~----~~~~v~~~~~s~~~~~l~~~~ 121 (706)
..+ |... ++ .+ ..+.. +......++|.|||.+.++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 434 5421 11 12 22322 234577899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.32 Score=45.73 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=97.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE----
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR---- 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~---- 96 (706)
.+-|....+.|.+...+...=|-.+... ++..-....++|.++.||+|.+.||+--.+..|.+.+....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 4555555555554444444434333221 222222346799999999999999999999999999984433222
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+-+..+..|....|+.+ .-+|.....| +-+|.+... +.+...+.|+..|....|.++....+++++-..+++.=+.+
T Consensus 107 ~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 22334556889999877 4566665545 777776543 34555667889999999999877655555545555544444
Q ss_pred CCCe
Q 005254 176 LAKK 179 (706)
Q Consensus 176 ~~~~ 179 (706)
.++.
T Consensus 185 ~~~~ 188 (657)
T KOG2377|consen 185 RAGT 188 (657)
T ss_pred eece
Confidence 4443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.82 Score=38.21 Aligned_cols=171 Identities=8% Similarity=0.008 Sum_probs=91.0
Q ss_pred EEEEEeeCC--CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 412 ILIVTGSKD--NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 412 ~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
.++.+.+.- ..|+.||+.+++.+....-....+..=-...-+..+-.-.-.+|.-..+|.+..+. ..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~----------lg- 125 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE----------LG- 125 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh----------hc-
Confidence 445555443 36999999999888765433222222222222333444455667777777664321 11
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--cC---CcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HK---RGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
.++.+-..=....|++-|..++....++.-|.++.....++.- .. ..+..+.|- ||...|-.-.+..|...|
T Consensus 126 --~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 126 --RFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred --ccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 1111111122334565676665556677777666544443332 11 223344444 466666555566677777
Q ss_pred cCCCceEEEEe------------ecccCEEEEEEEeCCCE-EEEE
Q 005254 565 ISDGSCLKTFE------------GHTSSVLRASFLTRGAQ-IVSC 596 (706)
Q Consensus 565 ~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~-l~~~ 596 (706)
..+|+.+..+. .|..-.+.+++.|++.. +++|
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77777765544 23345677888887744 4444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.19 Score=53.00 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=95.1
Q ss_pred CccEEEEEEccCCCEEEEEe--ccCeEEEEECCCCeEEE-----Eeec------cCCCeEEEEECCCCC-EEEEecCCCc
Q 005254 60 SDTITALALSPDDKLLFSSG--HSREIRVWDLSTLKCLR-----SWKG------HDGPAIGMACHPSGG-LLATAGADRK 125 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~-----~~~~------~~~~v~~~~~s~~~~-~l~~~~~d~~ 125 (706)
.-+|..+...+|+...++.. .+-.|..+|+++...-. -|.. ......++.|.|.-. ..|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34778888888887766543 33478899997543211 1111 224456788888543 3455667888
Q ss_pred EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec----ccceEEEEEEecCCC
Q 005254 126 VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK----HFSRVTSMAITSDGS 201 (706)
Q Consensus 126 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~ 201 (706)
|.+..+........--.-....++++|+|.|++ ++.|-..|++.-|-. +.+....+.. ....|.+++|.....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ--l~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ--LFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccce--eeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 888877543322221235677899999999988 999999999998875 3333333321 247899999988777
Q ss_pred EEEEEe
Q 005254 202 TLISAG 207 (706)
Q Consensus 202 ~l~~~~ 207 (706)
++++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 666543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.4 Score=48.64 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=77.0
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-ecccCEEEEEEE--eCCCEEEEEeCCCCEEEEECC
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFL--TRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+......++-+.-|.-++..++-+...++.|||.+.+....+-. ...+.|..+.|. |+|+.+++.|-.+.|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333445555556655555555555679999998887543322 246789999885 688999999999999988532
Q ss_pred ---------CCeEEEEec--cCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 609 ---------TGECIATYD--KHE-DKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 609 ---------~~~~~~~~~--~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
+..++..+. .|. .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 223444443 343 5789999999997666544 55788764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.65 E-value=3.6 Score=43.44 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
....|..+.++|+|.+||..|..| |.|-.+... -.-..+.+-...|.|-.+.-+.. ++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFT---------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hcc----------------
Confidence 345788999999999999998755 555554321 10111222222333322221111 110
Q ss_pred eEEEeecccceEEEEEEecC---CCEEEEEeCCCEEEEEeCCCC
Q 005254 180 CVATLDKHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~ 220 (706)
..+...|..+.|+|. +..|++-+.|+.+++||+...
T Consensus 143 -----~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -----SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -----CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 122345666677764 467777788888888887643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=1 Score=45.57 Aligned_cols=142 Identities=9% Similarity=0.033 Sum_probs=71.2
Q ss_pred CCCCEEEEeeCC--CcEEEEeCCCccEEE--EEeecCCcEEEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEee
Q 005254 504 PNDSLVCTGSQD--RTACVWRLPDLVSVV--TFRGHKRGIWSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 504 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~ 576 (706)
-++.+.++|+.+ ..+..||..+++-.. .+.......... .-+++..+.|+.++ .+..||..+.+-...-..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467777888754 357778865543221 111111111112 23577777777653 467888765533221110
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHD 649 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~ 649 (706)
....-...+..-+|+..+.| |.+.+||..+++-. ..+.........+.+ +++..+.||.+ ..+..||.
T Consensus 395 ~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 395 YYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 00111112223466555665 45788998776533 222221222222333 77777777754 34667776
Q ss_pred Cch
Q 005254 650 STA 652 (706)
Q Consensus 650 ~~~ 652 (706)
.++
T Consensus 470 ~~~ 472 (480)
T PHA02790 470 RTY 472 (480)
T ss_pred CCC
Confidence 654
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.2 Score=39.89 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=117.4
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-------------
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC------------- 433 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------- 433 (706)
.+++.|+++|...+. .........--.+...|.++. ..+..+.+++.++....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~--v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIW--VLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEE--EEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 588899987765555 543211112223455788888 7777787777777777799998742221
Q ss_pred --EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcceEEEEEcCC--CCE
Q 005254 434 --VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAVAPN--DSL 508 (706)
Q Consensus 434 --~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~--~~~ 508 (706)
....-.+........+........+++....+|.++.......... ..+.. ........++..+..+++ ...
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~---~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFK---LFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhh---hhcccccccCCCCccceEeeecccccceE
Confidence 0111123333333333333223445555667777775543211000 00000 000011223333444433 567
Q ss_pred EEEeeCCCcEEEEeCCC--ccEEE-----EEeecC-CcEEEEEEccCCCEEEEecCCCcEEEEEcCCC-ceE--EEEeec
Q 005254 509 VCTGSQDRTACVWRLPD--LVSVV-----TFRGHK-RGIWSVEFSPVDQVVITASGDKTIKIWSISDG-SCL--KTFEGH 577 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~ 577 (706)
+++|+..+...++++.. ..... ...... .++.... -+++.+|++ ..+ ....-|.. | +.. ..+. -
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Llc-~~~-~~v~Vn~~-G~~~~r~~~l~-w 242 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLLC-YDE-FGVFVNLY-GKRRSRNPILH-W 242 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEEE-ECc-EEEEEeCC-CCccccceEEE-c
Confidence 77777653344555432 11000 011111 3333333 334555544 333 34444543 3 221 1222 2
Q ss_pred ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc
Q 005254 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
...+.++++. ..||+.-+. ..|.|+++.+++.++.+..
T Consensus 243 ~~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 3445566666 358777765 4599999999999888854
|
Unpublished observations. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.44 E-value=4.3 Score=42.92 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=52.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH 138 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~ 138 (706)
...|..|.++|+|++||..|..|. .|-.+.. ...-..+.+-...|.|=. +.+... ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt-------------------~~v~~~--~~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRT-------------------VPVDER--FF 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEE-------------------EEechh--hc
Confidence 458899999999999999888754 4433321 111112222222222221 222111 00
Q ss_pred EeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCC
Q 005254 139 YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+...|..+.|+|.+ ....|+.-..|+++++||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 11245567788888864 123367777888888888854
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4.6 Score=43.09 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=95.8
Q ss_pred cEEEEeCCCceEEEEEeCCC----cCeEEEEEecCCCe-EEEEec-----------CCCeEEEEEecCCCCCCCcccccc
Q 005254 422 SVRLWDSESRCCVGVGTGHM----GAVGAVAFSKKLQN-FLVSGS-----------SDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~-~l~~~~-----------~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
.|+++|..+++.+..+.... -.+.++.|+..... +++++. .+|.++.|++-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--------- 924 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--------- 924 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc---------
Confidence 47777777776655544222 24555666654433 333332 345577777654321
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
....+....-+-.-.++.|-..++.+| ....+++||+...++++.... -...|+.+++- +.++++|...-.+..+
T Consensus 925 ~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 925 KLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFV 1001 (1205)
T ss_pred eeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEE
Confidence 112222122222335666766666555 356899999987766554332 34567777765 6678887765555554
Q ss_pred EcCC-CceEEEEeec--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 564 SISD-GSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 564 d~~~-~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
..+. .+.+..+... ...++++.+- |...+|.+..=|.+.+-.+.
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 4332 3334444322 1245555554 44577878777887777653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.1 Score=45.57 Aligned_cols=118 Identities=8% Similarity=0.140 Sum_probs=77.5
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
+...-....-+.-|.-++.-++-+....+.|||...+.....-. ...+.|.++.|....+...+++.+..+.|.++.-.
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence 33333455556666666655555556789999999887544322 35788999999766555568888888999998431
Q ss_pred -----C----CeeEEEe--eccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 177 -----A----KKCVATL--DKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 177 -----~----~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
. ...++.+ ..|. .+|....|.++|.+++.+ ++.+.+++-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1222222 2333 578899999999655444 467888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.92 Score=45.97 Aligned_cols=184 Identities=11% Similarity=0.094 Sum_probs=95.5
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
-.|+|++.. |+.+.......+.+-.+.|+.+. -|++...+|++.+|++........ ..-.......|..+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~-------svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESN-------SVGFESQMSDIVEC 133 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhccc-------ccccccccCceeEE
Confidence 357777764 45555544455588889999885 488899999999999875432110 00112223335555
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCC---EEEEec-CCCcEEEEEcCCC-ceEE
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQ---VVITAS-GDKTIKIWSISDG-SCLK 572 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~---~l~~~~-~dg~i~iwd~~~~-~~~~ 572 (706)
.+..+|-.+ -..+|.+.+-+-........++. ...+-++-...+++. .++-.. ..+ ..++-.... ....
T Consensus 134 ~~f~~GVav--lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 134 RFFHNGVAV--LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLH 210 (829)
T ss_pred EEecCceEE--EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccc
Confidence 555555333 33345554433222212222222 111112222222211 111111 111 111111111 1112
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+....+.+..+..||+.++|+--..+|.|.+-+.+..+++..+.
T Consensus 211 ~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 211 ALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 222234667889999999999999999999998887766665554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.1 Score=44.24 Aligned_cols=125 Identities=9% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCcCeEEEEEecCC---CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 440 HMGAVGAVAFSKKL---QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 440 ~~~~v~~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
....|..+.|.|-+ ..-+++......|.+|.+.....+.......+.........--.....|+|....|++-....
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 44678899998853 224666677889999999754322221111111111111111234578999888888776554
Q ss_pred cEEEEeCCCc--cEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEc
Q 005254 517 TACVWRLPDL--VSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSI 565 (706)
Q Consensus 517 ~i~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~ 565 (706)
.-.++++... .....+ ...+-|.|.+|.+||++|+++-. .=.-++||-
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 4444555432 222333 35678999999999998876533 334678874
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=5.4 Score=42.47 Aligned_cols=235 Identities=9% Similarity=0.012 Sum_probs=114.6
Q ss_pred eecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCC
Q 005254 406 ALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSD 476 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~ 476 (706)
++|+++.++++...+| .+++.|+.++..+...-.. .-..++|.++++.++++...+ ..|..+++.+...
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 6788887555544444 5888899887643221111 114699999988666665432 3566666654411
Q ss_pred CCCcccccceeEEEeecCcceE-EEEEcCCCCEEEEeeC---CCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDIN-SLAVAPNDSLVCTGSQ---DRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
. ....+........ ....+.++++++..+. ++.+.+++. .++.....+.........+. +..+.+
T Consensus 212 ~--------d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 212 Q--------DELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred H--------CeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 1 1122222222222 3344558887765543 356888884 33433222222222222222 323333
Q ss_pred EEEecC---CCcEEEEEcCCCceEEEEeec-c-cCEEEEEEEeCCCEEEEEeCCCCEE--EEECCCCeEEEEec-cCCCc
Q 005254 551 VITASG---DKTIKIWSISDGSCLKTFEGH-T-SSVLRASFLTRGAQIVSCGADGLVK--LWTVRTGECIATYD-KHEDK 622 (706)
Q Consensus 551 l~~~~~---dg~i~iwd~~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~-~~~~~ 622 (706)
++.... ...|...++........+..+ . ..+..+.+. .+..+++...+|.-+ +++..++ .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333222 223444444421222333334 2 367777776 334555666666544 4454433 334433 22223
Q ss_pred EEEEEEc--CCCC-EEEEEeC---CCcEEEEECCchh
Q 005254 623 IWALAVG--KKTE-MFATGGS---DALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s--~~~~-~l~~~~~---dg~i~vw~~~~~~ 653 (706)
+..+.++ +++. ++++.+. -+.+..+|+.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3334444 3333 4444332 4678888877653
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=42.95 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.5
Q ss_pred CCeEEEEECCCC------CEEEEecCCCcEEEEECCCC
Q 005254 103 GPAIGMACHPSG------GLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 103 ~~v~~~~~s~~~------~~l~~~~~d~~i~vw~~~~~ 134 (706)
..|.+++|||-| -+||+.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 489999999954 47889999999999987643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.3 Score=39.39 Aligned_cols=234 Identities=13% Similarity=0.133 Sum_probs=113.4
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE---EEEE----eCCCcCeEEEEEecC----CCeEEEEecC------
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG----TGHMGAVGAVAFSKK----LQNFLVSGSS------ 462 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~~l~~~~~------ 462 (706)
..++ +.|++.. +++...|.|++++ ..+.. +... .........++++|+ +. +.++.+.
T Consensus 5 ~~~a--~~pdG~l--~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~-lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 5 RSMA--FLPDGRL--LVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGY-LYVYYTNADEDGG 78 (331)
T ss_dssp EEEE--EETTSCE--EEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-E-EEEEEEEE-TSSS
T ss_pred eEEE--EeCCCcE--EEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCE-EEEEEEcccCCCC
Confidence 4555 7788654 4456699999999 33333 2222 234457788999994 33 3333321
Q ss_pred C--CeEEEEEecCCCCCCCccccccee-EEEe---ecCcceEEEEEcCCCCEEEEeeCCCc-------------EEEEeC
Q 005254 463 D--HTIKVWSFDGLSDDAEQPMNLKAK-AVVA---AHGKDINSLAVAPNDSLVCTGSQDRT-------------ACVWRL 523 (706)
Q Consensus 463 d--~~i~i~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~-------------i~i~d~ 523 (706)
. ..|.-|.+....... ...+.. .... ........|+|.|||.+.++.+..+. |.-.+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~---~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDL---SSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SEEEEEEEEEEETTSCEE---EEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CcceeeEEEeccCCcccc---ccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc
Confidence 1 234444444331000 001111 1111 12344567999999977766554332 222221
Q ss_pred CCccE-------------EEE-EeecCCcEEEEEEccC-CCEEEEe-cCCCcEEEEEcCCC-------------------
Q 005254 524 PDLVS-------------VVT-FRGHKRGIWSVEFSPV-DQVVITA-SGDKTIKIWSISDG------------------- 568 (706)
Q Consensus 524 ~~~~~-------------~~~-~~~~~~~v~~~~~s~~-~~~l~~~-~~dg~i~iwd~~~~------------------- 568 (706)
. ++. ... -.++ .....++|+|. |.+.++= +.|+.=.|.-+..+
T Consensus 156 d-G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 156 D-GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp T-SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred c-CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence 1 110 000 1112 22457899998 5554432 22222222222111
Q ss_pred ----------ceEEEEeecccCEEEEEEEeC-------CCEEEEEeCCCCEEEEECCCCeEEEE----eccCCCcEEEEE
Q 005254 569 ----------SCLKTFEGHTSSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGECIAT----YDKHEDKIWALA 627 (706)
Q Consensus 569 ----------~~~~~~~~~~~~i~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~ 627 (706)
.++..+. +...++.+.|-.. |.++++.-..+.|....+.++..+.. +......+..++
T Consensus 234 ~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp CTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred ccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence 1222333 3356677777643 44566555566788877765543222 223455899999
Q ss_pred EcCCCCEEEEEeCCCcEE
Q 005254 628 VGKKTEMFATGGSDALVN 645 (706)
Q Consensus 628 ~s~~~~~l~~~~~dg~i~ 645 (706)
+.|||.+.++...+|.|.
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999988888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.032 Score=56.74 Aligned_cols=140 Identities=18% Similarity=0.267 Sum_probs=84.2
Q ss_pred eEEEEEcc--CCeEEEeec-----CCCccEEEEEEcc---CCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE-
Q 005254 41 SINIVDLS--NASIKSTIE-----GGSDTITALALSP---DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA- 109 (706)
Q Consensus 41 ~i~i~d~~--~~~~~~~l~-----~~~~~i~~l~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~- 109 (706)
.+.||++. .|++...+. .-...+.-+.|.| +.-++..+..++.+++.++.+... ..+.+|...+..++
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHH
Confidence 57778764 455433332 2223445555554 566777777788888877654332 44555776666554
Q ss_pred ----------ECCCCCEEEEecCCCcEEEEECC-----CCeEEEEeeCCCC-cEEEEEEcCC-------CCceEEEEEe-
Q 005254 110 ----------CHPSGGLLATAGADRKVLVWDVD-----GGFCTHYFKGHKG-VVSSILFHPD-------TDKSLLFSGS- 165 (706)
Q Consensus 110 ----------~s~~~~~l~~~~~d~~i~vw~~~-----~~~~~~~~~~~~~-~v~~~~~~~~-------~~~~~l~~~~- 165 (706)
.||||+.+|.++.||.++.|.+. .-++++..+.|.+ +-.|.-|+.. +...++++++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 58999999999999998888763 2345566667763 3333334332 2223344444
Q ss_pred cCCeEEEEECCCCeeE
Q 005254 166 DDATVRVWDLLAKKCV 181 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~ 181 (706)
.+..+++|.-...+|+
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 4567889987666655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.1 Score=42.42 Aligned_cols=180 Identities=11% Similarity=0.107 Sum_probs=97.4
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE----eeccCCCeEEEEECCCCCE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS----WKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~ 116 (706)
.|.||+. +|+.+..+.-....+-.+.|+.+..+ +....+|++++|++... .+.. +......|..+.|..+|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV- 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEEL-ICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV- 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceE-EEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce-
Confidence 5999996 56666544433448889999988765 45678999999998542 2222 122334566677776663
Q ss_pred EEEecCCCcEEEEE-CCCCeEEEEeeC---CCCcEEEEEEcCCCCc-eEEEEEe-cCCeEEEEECCCCe-eEEEeecccc
Q 005254 117 LATAGADRKVLVWD-VDGGFCTHYFKG---HKGVVSSILFHPDTDK-SLLFSGS-DDATVRVWDLLAKK-CVATLDKHFS 189 (706)
Q Consensus 117 l~~~~~d~~i~vw~-~~~~~~~~~~~~---~~~~v~~~~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~-~~~~~~~~~~ 189 (706)
++-..+|.+.+-+ .+... ...++. ..-+-.|-...+++.. ..++-.. ..+ ..+.-.++.. ....+....+
T Consensus 141 -avlt~~g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 141 -AVLTVSGQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -EEEecCCcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 3333445554433 32221 222221 1111122222222111 1111111 111 1112111111 1122222246
Q ss_pred eEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 190 ~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.+..+..||+.++|+--...|.+.+-+.+..+....+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 78889999999999999999999999888776665554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.019 Score=54.04 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=159.3
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+.+.. ++.++.+..+..||-...... .. ...+..-.++|..++...++.+-..+.+.+|++.......
T Consensus 42 w~~e~~n-lavaca~tiv~~YD~agq~~l-e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq------- 111 (615)
T KOG2247|consen 42 WRPEGHN-LAVACANTIVIYYDKAGQVIL-EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ------- 111 (615)
T ss_pred EecCCCc-eehhhhhhHHHhhhhhcceec-cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------
Confidence 6677777 777777878888885433222 21 2344555788888888777888889999999997642110
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
...+....-.-+.|++.+..++.+...|.+.|++-.+.+.+...-.|...++++++.+.+. .+.++.|..+.+-..
T Consensus 112 ---LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 112 ---LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQ 187 (615)
T ss_pred ---HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhh
Confidence 0011111112267899999999999999999999888777776666999999999998654 555566655544333
Q ss_pred CCCceEEEEe--ecccCEE-----EEEEEeCCCEEEEEeCCCCEEE-----EECCCCeEEEEeccCCCcEEEEEEcCCCC
Q 005254 566 SDGSCLKTFE--GHTSSVL-----RASFLTRGAQIVSCGADGLVKL-----WTVRTGECIATYDKHEDKIWALAVGKKTE 633 (706)
Q Consensus 566 ~~~~~~~~~~--~~~~~i~-----~~~~s~~~~~l~~~~~dg~i~i-----wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 633 (706)
. ++.....+ +..+... .=.|..-|..+.+.-. |.+.+ =..+...-+ .++...+.+.|..|--||.
T Consensus 188 e-geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval-~fq~~~gni~cyrwylDg~ 264 (615)
T KOG2247|consen 188 E-GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVAL-QFQEKYGNIHCYRWYLDGY 264 (615)
T ss_pred c-cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccce-EeeecCCceeEEEEecccc
Confidence 2 12111111 1111110 0122333444433322 11111 111122223 5666677889999988875
Q ss_pred EEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhccchhHhhheeeecCCcchHHHHH
Q 005254 634 MFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLDADYTKAIQVAFELRRPHKLFELF 701 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (706)
. ..+-.-|.|..-...+++..++...+. + -...+...+......+++.++-+-++-+++-+++
T Consensus 265 i-~igf~ag~iV~iS~h~aeLgaeffqkl-d---y~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~ 327 (615)
T KOG2247|consen 265 I-LIGFDAGYIVSISAHNAELGAEFFQKL-D---YRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELT 327 (615)
T ss_pred c-cccccceeEEEEeccchHHHHHHHHHh-h---HHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4 446666667777777777766655443 1 1223334445555566666665555555554443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.17 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=26.5
Q ss_pred ccEEEEEEccCC---CEEEEEeccCeEEEEECCC
Q 005254 61 DTITALALSPDD---KLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 61 ~~i~~l~~s~~~---~~l~s~~~d~~i~iwd~~~ 91 (706)
+.|.++.|||+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5899998899999999985
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.14 Score=30.13 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=26.4
Q ss_pred CCeEEEEECCCC---CEEEEecCCCcEEEEECCCC
Q 005254 103 GPAIGMACHPSG---GLLATAGADRKVLVWDVDGG 134 (706)
Q Consensus 103 ~~v~~~~~s~~~---~~l~~~~~d~~i~vw~~~~~ 134 (706)
+.|.++.|||+. .+|+.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.73 E-value=7.8 Score=42.19 Aligned_cols=187 Identities=13% Similarity=0.184 Sum_probs=96.7
Q ss_pred eCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEe---c----CC-CeEEEEec---------CCCeEEEEEecCCCCCCC
Q 005254 418 SKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFS---K----KL-QNFLVSGS---------SDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~---~----~~-~~~l~~~~---------~d~~i~i~~~~~~~~~~~ 479 (706)
+....|.+.+..+++.+..+.- ....+.++... . .+ +.++++|. ..|.+.++|+-.--+.+.
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 3445666666666655544332 12233333322 1 11 34677764 248899999865322222
Q ss_pred cccc-cceeEEE-eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 480 QPMN-LKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 480 ~~~~-~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
.+.. .+..... ...++.|..++ .-+|.++.+ ....|.+|++.. ...+.. .--.-++.-....--.++|+.|.-
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~--~GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSS--QGQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEE-EeccEEEEc--cCcEEEEEEeccCCcceee-EEeccceeEEehhhhhhheehhhh
Confidence 2221 1222222 23445555554 335644443 345699999843 333221 112222333333334567777776
Q ss_pred CCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCC--EEEEEeCCCCEEEEECC
Q 005254 557 DKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGA--QIVSCGADGLVKLWTVR 608 (706)
Q Consensus 557 dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~ 608 (706)
-..|.+.-....-....+-+ ..-.+.+..|--||. ++++++.|++|+++-..
T Consensus 1157 ~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 66677665543322222221 223578888888887 46888899999988553
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.0046 Score=57.91 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=93.3
Q ss_pred eEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEE-Eeecc
Q 005254 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLR-SWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~-~~~~~ 101 (706)
..+-|.+.-++.++.+ .+..||- .++....+. .++....++|..++..++. +-..+.+.+||+.+..... .+.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg- 116 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG- 116 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-
Confidence 4455677667777777 5667774 444433333 3455567888888876665 4557899999997643211 1111
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 167 (706)
...-.-+.|++....++.+...+.+.|++..+.+.+.....|..+++++++.+.+. .+.++.|
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~---vil~dcd 179 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY---VILCDCD 179 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce---eeecCcH
Confidence 11222278999999999998999999999988877776666999999999998743 4444433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.2 Score=38.74 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=87.6
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEE-EeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACV-WRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
...+..+.+.|++.+++++. .|.+.. +|- .++.-.. .......++++.+.++++.++++ ..|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 44678899999987776654 454443 221 2222222 22345678999999998876664 5676553233344332
Q ss_pred EEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 005254 572 KTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALV 644 (706)
Q Consensus 572 ~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i 644 (706)
..... ....+..+.+.+++..++ ++.+|.+. .....|+.-...+ .-......+.|..+++.++ .+..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceE
Confidence 22111 123577888998876555 45667555 3444454333332 2224577788876666555 6678988
Q ss_pred EEEECC
Q 005254 645 NLWHDS 650 (706)
Q Consensus 645 ~vw~~~ 650 (706)
..|+-.
T Consensus 326 l~~~~~ 331 (334)
T PRK13684 326 LRYVGS 331 (334)
T ss_pred EEecCC
Confidence 888643
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.1 Score=38.72 Aligned_cols=152 Identities=14% Similarity=0.204 Sum_probs=85.9
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCe------EEEEEecCCCCCCCcccccceeEEEee--------cCcceEEEEEcCCC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHT------IKVWSFDGLSDDAEQPMNLKAKAVVAA--------HGKDINSLAVAPND 506 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~------i~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~s~~~ 506 (706)
-+.+..+.+.+++. .+++.+.+|. +..+++.......... .......+.. ......+|++.++|
T Consensus 19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV-TILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccce-EeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 45677888886544 4556666666 5555554411100000 0001111111 11245578887888
Q ss_pred CEEEEeeCC------CcEEEEeCCCccEEEEEe---------------ecCCcEEEEEEccCCCEEEEecC-----CC--
Q 005254 507 SLVCTGSQD------RTACVWRLPDLVSVVTFR---------------GHKRGIWSVEFSPVDQVVITASG-----DK-- 558 (706)
Q Consensus 507 ~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~-----dg-- 558 (706)
.++++.-.+ ..|..++.. ++....+. ..+....+|+++|+|+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877666 678888865 55444331 13456889999999997666543 22
Q ss_pred c-------EEE--EEcCC-CceEEEEe----e-----cccCEEEEEEEeCCCEEEE
Q 005254 559 T-------IKI--WSISD-GSCLKTFE----G-----HTSSVLRASFLTRGAQIVS 595 (706)
Q Consensus 559 ~-------i~i--wd~~~-~~~~~~~~----~-----~~~~i~~~~~s~~~~~l~~ 595 (706)
. +++ ||..+ ++....+. . ....+..+.+.+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 444 44444 32333222 1 2457888999999987765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2 Score=43.56 Aligned_cols=78 Identities=10% Similarity=0.200 Sum_probs=48.4
Q ss_pred ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEE-ECCCCeE
Q 005254 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW-TVRTGEC 612 (706)
Q Consensus 534 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~~~ 612 (706)
.|.+.|--+..+..+..|+.-...-.+.++|+.+.+....+ +-++.+.|.|....++.-+.|. +.|| ++.-.+.
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn-l~iwyn~d~peq 409 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN-LCIWYNIDAPEQ 409 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-eEEEecCCcchh
Confidence 37777777777776666666555666788888655332111 2245578888777777666555 5555 6655555
Q ss_pred EEEe
Q 005254 613 IATY 616 (706)
Q Consensus 613 ~~~~ 616 (706)
+..+
T Consensus 410 vt~~ 413 (1636)
T KOG3616|consen 410 VTMF 413 (1636)
T ss_pred heee
Confidence 4444
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.25 Score=46.37 Aligned_cols=157 Identities=13% Similarity=0.158 Sum_probs=95.7
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEE-Eee-cCCCc----cEE-EEEEccCCCEEEEEeccCeEEEE-ECCCC
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIK-STI-EGGSD----TIT-ALALSPDDKLLFSSGHSREIRVW-DLSTL 92 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~-~~l-~~~~~----~i~-~l~~s~~~~~l~s~~~d~~i~iw-d~~~~ 92 (706)
....+-+.|||++++.-.++.+.|+++.+.... +.+ +...+ .|+ ++..-..|.-|.++..||.|.-| |+..+
T Consensus 222 ~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~ 301 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRD 301 (733)
T ss_pred chHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecC
Confidence 345788999999999999999999988665432 112 21111 222 22223346667788889988877 44322
Q ss_pred -----eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC
Q 005254 93 -----KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167 (706)
Q Consensus 93 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 167 (706)
..++.++-...++..+.-..+.+-+++-...|++.++.-...+.+.. ..--..+.-+++||.+++ +++ .+.
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~--Ll~-e~~ 377 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAY--LLS-EDQ 377 (733)
T ss_pred CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccch--hee-ecC
Confidence 12233332334555454444556677777888888877655444332 222336677899998776 444 345
Q ss_pred CeEEEEECCCCeeE
Q 005254 168 ATVRVWDLLAKKCV 181 (706)
Q Consensus 168 g~i~vwd~~~~~~~ 181 (706)
|.++++.+++..+-
T Consensus 378 gki~~~~l~Nr~Pe 391 (733)
T COG4590 378 GKIRLAQLENRNPE 391 (733)
T ss_pred CceEEEEecCCCCC
Confidence 66888887765443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.5 Score=43.72 Aligned_cols=111 Identities=13% Similarity=0.266 Sum_probs=75.9
Q ss_pred ceEEEEEcC--CCCEEEEeeCCCcEEEEeCCC-------c-------------cEEEEEeecCCcEEEEEEc--cCCCEE
Q 005254 496 DINSLAVAP--NDSLVCTGSQDRTACVWRLPD-------L-------------VSVVTFRGHKRGIWSVEFS--PVDQVV 551 (706)
Q Consensus 496 ~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~-------~-------------~~~~~~~~~~~~v~~~~~s--~~~~~l 551 (706)
.|+.|.+.. +...|+.+.+||.|.+|..++ . ++...+. .....++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 356665544 557899999999999997521 0 0111222 34578899998 788899
Q ss_pred EEecCCCcEEEEEcCCC--ce-EEEEeecccCEEEEEEEeCC---C---EEEEEeCCCCEEEEEC
Q 005254 552 ITASGDKTIKIWSISDG--SC-LKTFEGHTSSVLRASFLTRG---A---QIVSCGADGLVKLWTV 607 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~--~~-~~~~~~~~~~i~~~~~s~~~---~---~l~~~~~dg~i~iwd~ 607 (706)
|+++....|.||-.... +. ...-..+...|.+++|.++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99998888888876432 11 11111256678899998754 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=5.8 Score=38.60 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=85.1
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe-----
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF----- 135 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~----- 135 (706)
...+..++||.+++.+..-..++-|| .|.. ...-......+.++.|.+++..++++ .+|. .+|..+.++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCccccc
Confidence 34456778888777665443333344 2321 11112234678999999999888776 4454 445555553
Q ss_pred EEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEEEEecCCCEEEEEeCCC
Q 005254 136 CTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 136 ~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
....... ....+..+.|.+++. ++.++..|.+.... ..|+.-...+ .-......+.|.++++ .+..+.+|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G 391 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDG 391 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCc
Confidence 2222221 223588999998755 67777888666653 4454433322 2245678888877765 55555688
Q ss_pred EEEEE
Q 005254 211 VVNLW 215 (706)
Q Consensus 211 ~i~~w 215 (706)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.5 Score=41.37 Aligned_cols=66 Identities=11% Similarity=0.213 Sum_probs=50.3
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-------c-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATY-------D-------KHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 45567889999999999999999998765432 1 2456788999998898777665 5677877654
Q ss_pred c
Q 005254 651 T 651 (706)
Q Consensus 651 ~ 651 (706)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.18 E-value=9.6 Score=40.88 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCC
Q 005254 515 DRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGA 591 (706)
Q Consensus 515 dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~ 591 (706)
+|.++.|++-. ++.+.-+....-+-.-.++.|-..++++|- ...+++||+...++++..+.. ...|+.+.+ .+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~ 987 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGA 987 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEee--cce
Confidence 35567776543 332222221111112345667666666654 456999999877766554322 345655555 456
Q ss_pred EEEEEeCCCCEEE--EECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 592 QIVSCGADGLVKL--WTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 592 ~l~~~~~dg~i~i--wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++++|...-.+.+ |+-...+.+.-.. .-...|+++.+- |...++.+..-|.+.+-++.....+...
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~ 1056 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPPDVSEEAS 1056 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCCcchhhhc
Confidence 8888877665554 5544444443332 223456666654 4556777888888888888766555443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.5 Score=42.30 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=90.7
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe------EEEEecCCCeEEEEEecCCCCCCCc
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN------FLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
..+...++..|+....++-.|++.|+.+.....+... -+.|.|..+. --+.|-.+..|.-.|.+....
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN---- 549 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN---- 549 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC----
Confidence 3444555666777788889999999999888877655 4666664320 123344444443333332110
Q ss_pred ccccceeEE-EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCc
Q 005254 481 PMNLKAKAV-VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKT 559 (706)
Q Consensus 481 ~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 559 (706)
....... -........+..-. ...++|+++..|.|++||--.-.....+++-...|..+..+.+|+++++.+.. .
T Consensus 550 --Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y 625 (776)
T COG5167 550 --KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y 625 (776)
T ss_pred --ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e
Confidence 0000000 00011122233333 34599999999999999976555556677788899999999999988776654 4
Q ss_pred EEEEEc
Q 005254 560 IKIWSI 565 (706)
Q Consensus 560 i~iwd~ 565 (706)
+.+-|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 667675
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=13 Score=41.03 Aligned_cols=157 Identities=11% Similarity=0.158 Sum_probs=99.4
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEE--------ECCCCCEEEEecCCCcEEEEE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA--------CHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~d~~i~vw~ 130 (706)
|...=+.+-+-|.=.+. -.+-|+.+.+|+.+++.....+.+-+..|..+. |-|.=+++.+.+.--.|.++-
T Consensus 77 ~~~~~~~mGiFpeI~Ra-WiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRA-WITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred Ccceeeeeccchhhcce-EEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 44444555555543332 234578999999999888888888777777765 334445665555556677765
Q ss_pred CCCCeE-------E--EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC--CCC---e-e---------------
Q 005254 131 VDGGFC-------T--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAK---K-C--------------- 180 (706)
Q Consensus 131 ~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~---~-~--------------- 180 (706)
+.-.+. . ..+......|.++....+|+ ++.++.||.|+=.-. .++ + +
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 532211 1 11223356688888776666 777777774432211 111 0 0
Q ss_pred -EEEee-cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 181 -VATLD-KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 181 -~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
+-.+. .+..+|..++....-..+++-++.|.|.+|++..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11123 4567999999988888999999999999999976
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.72 E-value=2.2 Score=38.84 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=64.4
Q ss_pred cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec------CCCcEEEEECCCCeEEEEee----CCCCcEEEE
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFK----GHKGVVSSI 150 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~ 150 (706)
-..|++||..+.+-...-.+-.+.|+++.|..+.++++.|. ....+..||+++......-. .-.++|..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 34699999988776655555678999999997777777774 35678899998776432222 134788888
Q ss_pred EEcCCCCceEEEEEe-cCC--eEEEEECCC
Q 005254 151 LFHPDTDKSLLFSGS-DDA--TVRVWDLLA 177 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~-~dg--~i~vwd~~~ 177 (706)
.+..+....+.+.|. .+| .|..||-.+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 886554444455544 333 455565433
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.61 Score=40.86 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=49.0
Q ss_pred EccCCCEEEEEeccCeEEEEECCCCeEEEEe-------e-------ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 68 LSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-------K-------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 68 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 5567899999999999999999998765432 1 2446777788887777766654 46777777654
Q ss_pred Ce
Q 005254 134 GF 135 (706)
Q Consensus 134 ~~ 135 (706)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=7.5 Score=37.92 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC--ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCeE
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS--DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPAI 106 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~--~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~ 106 (706)
||+..+...++.|.-.|..+++.+-....-. ..+..-.+..+|+ |..++.++.+...|..+|+++....... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec--CCeEEEEECCCCeeEEE-
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVAT- 183 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~- 183 (706)
.-..-.++..++.. .++.+...|..+|+...........-.....+|......++.+.. ++.+.-.|.++|.....
T Consensus 147 ~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Q ss_pred ---eecc------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 184 ---LDKH------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 184 ---~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
...- ...+..-...-++.. +.++.++.+...+..+++.+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGV-YAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEECCcE-EEEecCCeEEEEEcCCCceEEEEec
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.64 E-value=4.1 Score=34.82 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=67.8
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCCCCEEEEecCC---C---cEEEE-ECCCC
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---R---KVLVW-DVDGG 134 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~---~i~vw-~~~~~ 134 (706)
.++.-++. +.|..+.....|.+|++. ..+++.+|..- +.|..++++..|+||++--.+ . .+++| ||+..
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 33343432 344444556789999987 44677778754 889999999999999996422 2 56665 33221
Q ss_pred ----eEEE-EeeC---------------------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 135 ----FCTH-YFKG---------------------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 135 ----~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.++. ++-| -..++.+++..|-... |+.|+. +.+.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~--LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN--LLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC--EEEEcC-CEEEEEEEEEE
Confidence 1111 1111 2345677888776555 666655 45888876543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.1 Score=45.32 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=49.6
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...++++.-+|.|+-++.+..||.|+++++...+...... ...+-..+.|...| |+++..|+.+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence 4567888889999999999999999999997655422222 22444556777655 5666667878788643
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.4 Score=37.23 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=89.0
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEe-eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE---
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT--- 137 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~--- 137 (706)
+.+-|...++.|++ ...|.+.=|-++.. ...-.+ ....++|.++.||+|.+.||+--.+.+|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34445444444433 23344555554322 112222 224579999999999999999999999999998443322
Q ss_pred -EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEEEEEEecCCCEEEEEe
Q 005254 138 -HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 138 -~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
+..+..+..|...+|+.+.+ ++.....| +-+|-.. ..+.++..+.|...|....|.++.+.++.++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e---~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTE---IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecCee---EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22334556689999987633 66666666 7777554 3345566677888899999999887655443
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.40 E-value=5.3 Score=36.51 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=70.2
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe------ccCeEEEEECCCCeEEEEeec-----cCCCeEEEE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG------HSREIRVWDLSTLKCLRSWKG-----HDGPAIGMA 109 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~ 109 (706)
.|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+++..-. .+.+ -.++|..+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEE
Confidence 699999988876665555678999999997777887773 3567889999876532 2332 247888888
Q ss_pred ECC-CCC-EEEEec-CCC--cEEEEECCCCeEEEE-eeCCCCcEEEEEEcC
Q 005254 110 CHP-SGG-LLATAG-ADR--KVLVWDVDGGFCTHY-FKGHKGVVSSILFHP 154 (706)
Q Consensus 110 ~s~-~~~-~l~~~~-~d~--~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~ 154 (706)
+.. |+. ..+.|. .++ .|..||=.+-..+.. .......|..+.+.|
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 744 333 343433 333 455665433333322 222345666666654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.39 E-value=3.4 Score=40.00 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=92.0
Q ss_pred eEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCC--------CEEEEEeccCeEEEEECC-CCe
Q 005254 25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDD--------KLLFSSGHSREIRVWDLS-TLK 93 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~--------~~l~s~~~d~~i~iwd~~-~~~ 93 (706)
|....|..+|..-++. .++-.|++-|+.+....-|... -+.|.|+. +.|+-.+.. .|.--|.. .|.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~-svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDY-SVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeeccc-ceEEecccccCC
Confidence 4445566666655554 6888999999999988877665 67888854 344444444 44444443 332
Q ss_pred EEEEeec----cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 94 CLRSWKG----HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 94 ~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
.+..... ......+..-. ...|+|+++..|.|++||--.-+....+.+....|..+..+.+|+. +++.+. ..
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~--ilaTCk-~y 625 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH--ILATCK-NY 625 (776)
T ss_pred ceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE--EEEeec-ce
Confidence 2222211 11222232222 3459999999999999997666666667778889999999999885 444443 45
Q ss_pred EEEEEC
Q 005254 170 VRVWDL 175 (706)
Q Consensus 170 i~vwd~ 175 (706)
+.+-|+
T Consensus 626 llL~d~ 631 (776)
T COG5167 626 LLLTDV 631 (776)
T ss_pred EEEEec
Confidence 666665
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.35 E-value=7.6 Score=37.01 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=43.6
Q ss_pred cCcceEEEEEcC-------CCCEEEEeeCCCcEEEEeCCCccEEEE----EeecCCcEEEEEEccCCCEEEEecCCCcEE
Q 005254 493 HGKDINSLAVAP-------NDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGIWSVEFSPVDQVVITASGDKTIK 561 (706)
Q Consensus 493 ~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 561 (706)
+...++.+.|-. .|.+++..-..+.|...++.....+.. +......+..+++.|||.+.++.+.+|.|+
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345667777764 455666666667888888765533322 122444799999999999988888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=93.23 E-value=7 Score=36.21 Aligned_cols=179 Identities=15% Similarity=0.227 Sum_probs=99.7
Q ss_pred eEEcCCCCEEEEeeC-------------CeEEEEEccCCeEEEeecCC------CccEEEEEEccCC-----CEEEEEe-
Q 005254 25 LVVSSDGSFIACACG-------------ESINIVDLSNASIKSTIEGG------SDTITALALSPDD-----KLLFSSG- 79 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~-------------~~i~i~d~~~~~~~~~l~~~------~~~i~~l~~s~~~-----~~l~s~~- 79 (706)
+.+.++|++-+.=.+ -.|.+||+.+++.++++.-+ ...+..+++.... .++..+.
T Consensus 6 v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~ 85 (287)
T PF03022_consen 6 VQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS 85 (287)
T ss_dssp EEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET
T ss_pred EEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC
Confidence 666777766655333 27999999999987766432 4578888888732 2444443
Q ss_pred ccCeEEEEECCCCeEEEEeecc-------------------CCCeEEEEECC---CCCEEEEecCCCcEEEEECCCC---
Q 005254 80 HSREIRVWDLSTLKCLRSWKGH-------------------DGPAIGMACHP---SGGLLATAGADRKVLVWDVDGG--- 134 (706)
Q Consensus 80 ~d~~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~--- 134 (706)
..+.|.|+|+.+++.-+.+..+ ...+..++.+| ++++|....-.+ -.+|.+.+.
T Consensus 86 ~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~ 164 (287)
T PF03022_consen 86 GGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLR 164 (287)
T ss_dssp TTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHC
T ss_pred CcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhh
Confidence 3468999999998766654321 22366666655 666666554322 234443221
Q ss_pred -----------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEe---ecccceEEEEEEe
Q 005254 135 -----------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATL---DKHFSRVTSMAIT 197 (706)
Q Consensus 135 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~---~~~~~~v~~~~~~ 197 (706)
+.+..+.........+++.++| .++++--..+.|..|+..+.- ....+ ...-..+..+.+.
T Consensus 165 ~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 165 DPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp STT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred CccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 0112221122455667777754 447777888999999987511 11222 1113567888888
Q ss_pred c--CCCEEEEE
Q 005254 198 S--DGSTLISA 206 (706)
Q Consensus 198 ~--~~~~l~~~ 206 (706)
+ +|.+.+..
T Consensus 243 ~~~~g~L~v~s 253 (287)
T PF03022_consen 243 PEGDGYLWVLS 253 (287)
T ss_dssp T--TS-EEEEE
T ss_pred cccCceEEEEE
Confidence 8 66544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.04 E-value=8.4 Score=36.64 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=80.6
Q ss_pred cceEEc-CCCCEEEEeeCCe------EEEEEccC--C--eEE-----EeecCCCc--------cEEEEEEccCCCEEEEE
Q 005254 23 GPLVVS-SDGSFIACACGES------INIVDLSN--A--SIK-----STIEGGSD--------TITALALSPDDKLLFSS 78 (706)
Q Consensus 23 ~~~~~s-~dg~~l~~~~~~~------i~i~d~~~--~--~~~-----~~l~~~~~--------~i~~l~~s~~~~~l~s~ 78 (706)
+.|++. .++.+++....+. ++.+++.. + ..+ ..+....+ -.-+|++.++|.++++.
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~ 102 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISS 102 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEe
Confidence 469998 4566666555445 55555543 1 111 11221111 33488888888888887
Q ss_pred ecc------CeEEEEECCCCeEEEEee---------------ccCCCeEEEEECCCCCEEEEecC-----CC--c-----
Q 005254 79 GHS------REIRVWDLSTLKCLRSWK---------------GHDGPAIGMACHPSGGLLATAGA-----DR--K----- 125 (706)
Q Consensus 79 ~~d------~~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~-----d~--~----- 125 (706)
-.+ ..|..++.. |+.+..+. ..+....+|+++|||+.|.++.+ |+ .
T Consensus 103 E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~ 181 (326)
T PF13449_consen 103 EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNG 181 (326)
T ss_pred CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccC
Confidence 667 889999876 66555441 13467889999999997666532 22 1
Q ss_pred --EEE--EECCC-CeEE----EEeeC-----CCCcEEEEEEcCCCCc
Q 005254 126 --VLV--WDVDG-GFCT----HYFKG-----HKGVVSSILFHPDTDK 158 (706)
Q Consensus 126 --i~v--w~~~~-~~~~----~~~~~-----~~~~v~~~~~~~~~~~ 158 (706)
+++ +|..+ ++.. ..+.. ....|..+.+.++++.
T Consensus 182 ~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 182 SPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred ceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 444 44444 3222 22222 4567899999998763
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.9 Score=33.89 Aligned_cols=70 Identities=17% Similarity=0.032 Sum_probs=38.9
Q ss_pred EEEEEec--CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE-EeCCCEEEEEeCCCCcceeeecCc
Q 005254 160 LLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS-AGRDKVVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 160 ~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~w~~~~~~~~~~~~~~ 229 (706)
++.+.+. ...|++||+.+++.+.+..-....+..=-...-|.++.. .-.+|.-..+|.++.+.+..++-+
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 3444443 346999999999877655433222211111112233322 235788888888887776665443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.11 Score=48.64 Aligned_cols=169 Identities=13% Similarity=0.151 Sum_probs=105.3
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE-EEEe-eccc----CEE-EEEEEeCCCEEEEEeCCCCEEE
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL-KTFE-GHTS----SVL-RASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~~~~s~~~~~l~~~~~dg~i~i 604 (706)
+......|..+-..|||+.|..-+. .++.++++.+.... +++- ...+ .|+ ++..-..|.-|.+++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445567888899999999887665 67889988654321 1111 1111 122 2222345667888999999887
Q ss_pred E-ECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHHHHHHHhcchhhhhhhc
Q 005254 605 W-TVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKEEEAVLRGQELENAVLD 678 (706)
Q Consensus 605 w-d~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (706)
| |+..+. .++.++-...++..+.-..+.+-+++-+..|++.++.-...+....+...+......-.+...++..
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 7 554322 2233333334555554444555677888899998887766665544443344455566666777777
Q ss_pred cchhHhhheeeecCCcchHHHHH
Q 005254 679 ADYTKAIQVAFELRRPHKLFELF 701 (706)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~ 701 (706)
.+..+.....++.++++-.++-|
T Consensus 375 e~~gki~~~~l~Nr~PeiswsaL 397 (733)
T COG4590 375 EDQGKIRLAQLENRNPEISWSAL 397 (733)
T ss_pred ecCCceEEEEecCCCCCccHHHh
Confidence 77778777888888887776644
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.4 Score=46.27 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=91.8
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe--------cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS--------KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
.+.|..+.+|+++++.....+.+....|..+..- |.=+ +++..+.--.|.++-+.-.........-. ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iq-hlLvvaT~~ei~ilgV~~~~~~~~~~~f~-~~~ 172 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQ-HLLVVATPVEIVILGVSFDEFTGELSIFN-TSF 172 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhh-eeEEecccceEEEEEEEeccccCcccccc-cce
Confidence 3568889999999988888777777777776543 2323 33333444456666554332211111100 112
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC----CCc---c---E--------------EEEEe-ecCCcEEEEE
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL----PDL---V---S--------------VVTFR-GHKRGIWSVE 543 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~----~~~---~---~--------------~~~~~-~~~~~v~~~~ 543 (706)
.....+..|+++....+|+.+.+|- || .+|.+ .++ + . +..+. .+..+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 2334466789999888888777664 55 34433 111 0 0 11222 4677999999
Q ss_pred EccCCCEEEEecCCCcEEEEEcCC
Q 005254 544 FSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
....-+.+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998889999999999999999975
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.73 E-value=3.8 Score=31.86 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.4
Q ss_pred EEEccCCCEEEEEeccCeEEEEECCCC--------eEEEEeeccCCCeEEEEECC-----CCCEEEEecCCCcEEEEECC
Q 005254 66 LALSPDDKLLFSSGHSREIRVWDLSTL--------KCLRSWKGHDGPAIGMACHP-----SGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 66 l~~s~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~vw~~~ 132 (706)
-.|......|+.++.-|.|.|.+.... ..++.+. -...|++++-.+ +...|+.|+ ..++..||++
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 345666677888888999999987643 2344444 457788876544 345677766 4779999998
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~ 183 (706)
...-+..-. -...|.++.+-.-+ ... ++..+-+..|.-+|.+..+...+
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence 877655433 44667777763211 122 44444456677777655554443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.66 E-value=3.9 Score=31.81 Aligned_cols=113 Identities=8% Similarity=0.030 Sum_probs=68.8
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCcc--------EEEEEeecCCcEEEEEEcc-----CCCEEEEecCCCcEEEEEcC
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLV--------SVVTFRGHKRGIWSVEFSP-----VDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~ 566 (706)
-.|.....-|++++..|+|.|++..... .+..+. -...|++++-.+ +...|+.|+.. .+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3455556678888889999999876432 333333 566788876544 34567776554 59999998
Q ss_pred CCceEEEEeecccCEEEEEEEeC---CCEEEEEeCCCCEEEEECCCCeEEEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTGECIAT 615 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~ 615 (706)
...-+..-+ -...++++.+-.- ..-|+..+.+-.|.-||..-.+...+
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 776543333 2356677766431 22344444456777777655454443
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=92.53 E-value=6.1 Score=39.40 Aligned_cols=168 Identities=11% Similarity=0.171 Sum_probs=66.9
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEc-------cCCeEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe-EE
Q 005254 25 LVVSSDGSFIACACGESINIVDL-------SNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK-CL 95 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~-------~~~~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~ 95 (706)
+.+.|.-.+..+..++.++||+. .++.....+ .++...+.++ +++....|.|+.|+--+.. .+
T Consensus 31 ~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 31 MGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp EEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-TT-TT--
T ss_pred EEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEecccchhhhhc
Confidence 55667888888999999999998 334444444 4444444443 3344557788888643221 11
Q ss_pred EE-------------eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 96 RS-------------WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 96 ~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
.+ +......+......+.+ ++.+..+|.|.....+....+..+.-....-.+-.+...... ++
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~--~~ 178 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSS--IF 178 (422)
T ss_dssp EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEEE-TT------------------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCc--ee
Confidence 11 11011111112233444 344445566665555542222222110000000000000000 00
Q ss_pred EEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++ + +.+ .......|..++..+..+.|++...+|.|.+|++..
T Consensus 179 ~~-----~----~p~------~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 179 SS-----L----LPS------FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ----------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred cc-----c----cCC------cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 00 0 000 111233488899988889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.92 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEE
Q 005254 29 SDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALAL 68 (706)
Q Consensus 29 ~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~ 68 (706)
||+++|+++.. +.|.++|..+++.+..+.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 68888887764 48999999999888877654333 34444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.2 Score=26.40 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=29.0
Q ss_pred cCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCCeEEEEE
Q 005254 70 PDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 70 ~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 110 (706)
|++++|.++. .++.|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5778777654 4789999999999988888753 33345554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=91.92 E-value=9.6 Score=34.63 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCC-eEEEEEcc-------CCeEEEeecCCCc-----cEEEEEEc
Q 005254 3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLS-------NASIKSTIEGGSD-----TITALALS 69 (706)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~i~i~d~~-------~~~~~~~l~~~~~-----~i~~l~~s 69 (706)
+..|++.|. |+++|.+.+-+...+. ...+||.. ...++..+..... ..+.+.|+
T Consensus 19 Dp~L~N~WG-------------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN 85 (336)
T TIGR03118 19 DPGLRNAWG-------------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFN 85 (336)
T ss_pred Cccccccce-------------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEe
Q ss_pred cCCCE------------EEEEeccCeEEEEECCCCeE------EEEeeccCCCe---EEEEECCCCCEEEEec-CCCcEE
Q 005254 70 PDDKL------------LFSSGHSREIRVWDLSTLKC------LRSWKGHDGPA---IGMACHPSGGLLATAG-ADRKVL 127 (706)
Q Consensus 70 ~~~~~------------l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~v---~~~~~s~~~~~l~~~~-~d~~i~ 127 (706)
....+ ++.+++||+|.=|...-+.. +..-....+.| .+++-...+.+|..+. ..++|.
T Consensus 86 ~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~ID 165 (336)
T TIGR03118 86 GSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRID 165 (336)
T ss_pred CCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceE
Q ss_pred EEECCCCeEEEEeeCCCCc-------------------EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe--ec
Q 005254 128 VWDVDGGFCTHYFKGHKGV-------------------VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DK 186 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~ 186 (706)
|+| .+-..+..-.....+ |+-..-.++... =+.|.--|.|-++|. .++.++.+ .+
T Consensus 166 VFd-~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d--~v~G~G~G~VdvFd~-~G~l~~r~as~g 241 (336)
T TIGR03118 166 VFK-GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRND--EVAGAGLGYVNVFTL-NGQLLRRVASSG 241 (336)
T ss_pred Eec-CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccc--cccCCCcceEEEEcC-CCcEEEEeccCC
Q ss_pred ccceEEEEEEec------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 187 HFSRVTSMAITS------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 187 ~~~~v~~~~~~~------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
.-..-+.|+..| .|.+|+---.||+|..+|..+++.+-.+....
T Consensus 242 ~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 242 RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.74 E-value=23 Score=38.59 Aligned_cols=169 Identities=7% Similarity=0.064 Sum_probs=96.5
Q ss_pred CCCcCeEEEEEe---c--CCCeEEEEecCCCeEEEEEecCCCC------CC--CcccccceeEEEeecCcceEEEEEcC-
Q 005254 439 GHMGAVGAVAFS---K--KLQNFLVSGSSDHTIKVWSFDGLSD------DA--EQPMNLKAKAVVAAHGKDINSLAVAP- 504 (706)
Q Consensus 439 ~~~~~v~~~~~~---~--~~~~~l~~~~~d~~i~i~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~i~~~~~s~- 504 (706)
....+|..|.|. . +....++..-....+.|+...-... .. ..+............+.+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 2 1121244445556677776221111 00 00111111111123455778899998
Q ss_pred CCCEEEEeeCCCcEEEEeCCCc-----cEEEEEeecC----------CcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDL-----VSVVTFRGHK----------RGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
+.+.||+.+..|...||++... ........+. +.-..+.|.++.+.|+.++.. .+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence 5579999999999999999211 1111111111 223478898888888887665 49999998776
Q ss_pred eEEEE--eecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCC
Q 005254 570 CLKTF--EGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 570 ~~~~~--~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 609 (706)
....+ ......|..+.-+++.. +++.- ....|...++..
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 53312 22446788888877622 33322 236688788776
|
These proteins are found in fungi. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.9 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCC----CceEEEEEecCCeEEEEECCC
Q 005254 145 GVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 145 ~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~ 177 (706)
..+..++|||.| ...+|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 489999999954 357899999999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=91.09 E-value=14 Score=35.11 Aligned_cols=106 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCEEEEeeC------CeEEEEEccCCeE---EEeecCCCccE-EEEEEccCCCEEEEEec-----cCeEEEEECCCCe-
Q 005254 30 DGSFIACACG------ESINIVDLSNASI---KSTIEGGSDTI-TALALSPDDKLLFSSGH-----SREIRVWDLSTLK- 93 (706)
Q Consensus 30 dg~~l~~~~~------~~i~i~d~~~~~~---~~~l~~~~~~i-~~l~~s~~~~~l~s~~~-----d~~i~iwd~~~~~- 93 (706)
+++++++++. +.+..||+.+.+- ...+..-..+. ...+..-++++.+.|+. ...+..||..+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5566666653 2577788776553 12221111111 11112235666666664 2468888987654
Q ss_pred -EEEEeeccCCCeEEEEECCCCCEEEEecCCC----cEEEEECCCCeE
Q 005254 94 -CLRSWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFC 136 (706)
Q Consensus 94 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~vw~~~~~~~ 136 (706)
.+..+... ......+...+++..+.|+.++ .+.+||+++.+-
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 22222211 1222233344567777777553 356888887653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.98 E-value=18 Score=36.04 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=49.0
Q ss_pred CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 143 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
...+|..+.+...+. +..|+.|| +..||..+++.++.-.... .+|..+..+-.| .|.+|+.+| +.+.+.+.
T Consensus 163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhh
Confidence 456788888887764 88999999 7788888888776544333 456666555555 477887777 55555443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=17 Score=35.52 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=28.0
Q ss_pred EeCCCEEEEEeCCC----------------------CEEEEECCCCeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 587 LTRGAQIVSCGADG----------------------LVKLWTVRTGECI--ATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 587 s~~~~~l~~~~~dg----------------------~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+++..+.|+.+. .+.+||+.+.+-. ..+........+ ..-++++++.||..
T Consensus 277 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~a--v~~~~~iyv~GG~~ 353 (376)
T PRK14131 277 YSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVS--VSWNNGVLLIGGET 353 (376)
T ss_pred eECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEE--EEeCCEEEEEcCCC
Confidence 45677777777541 2457888765532 222211112223 33367778877753
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=90.48 E-value=17 Score=34.94 Aligned_cols=105 Identities=10% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCCEEEEeeC--------CeEEEEEccCCeEEEeec-C--CC-c--cEEEEEEccCCCEEEEEecc-----CeEEEEECC
Q 005254 30 DGSFIACACG--------ESINIVDLSNASIKSTIE-G--GS-D--TITALALSPDDKLLFSSGHS-----REIRVWDLS 90 (706)
Q Consensus 30 dg~~l~~~~~--------~~i~i~d~~~~~~~~~l~-~--~~-~--~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~ 90 (706)
+++++++|+. +.+.+||+.+.+-...-. + .. . ...++++ ++++++.|+.+ ..+.+||.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 4566666553 248899988765332111 1 01 0 1122222 46666676642 357888987
Q ss_pred CCeE--EEEeec---cCCCeEEEEECCCCCEEEEecCC-----------CcEEEEECCCCeE
Q 005254 91 TLKC--LRSWKG---HDGPAIGMACHPSGGLLATAGAD-----------RKVLVWDVDGGFC 136 (706)
Q Consensus 91 ~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d-----------~~i~vw~~~~~~~ 136 (706)
+.+- +..+.. ........+..-+++..+.|+.+ ..+.+||..+.+-
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 7542 222210 11111222223356666776643 2477888877653
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.09 E-value=6 Score=41.15 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC----ccEEEEE--ee--------------------cCCcEEEEEEcc----CCCEEEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPD----LVSVVTF--RG--------------------HKRGIWSVEFSP----VDQVVIT 553 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~--~~--------------------~~~~v~~~~~s~----~~~~l~~ 553 (706)
++...++++..||.+....... +...... .. ....+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999888877654 2222111 11 123455666666 7789999
Q ss_pred ecCCCcEEEEEcCCCceEEEE
Q 005254 554 ASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 554 ~~~dg~i~iwd~~~~~~~~~~ 574 (706)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997665
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.89 E-value=25 Score=36.00 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=106.4
Q ss_pred eeeeccceEEcCCCCEEEEeeCC------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCe---EEEE-
Q 005254 18 QFYGGGPLVVSSDGSFIACACGE------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE---IRVW- 87 (706)
Q Consensus 18 ~~~~~~~~~~s~dg~~l~~~~~~------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~---i~iw- 87 (706)
.+|.-+.++.|||++++|++.+. .+++.|+.+++.+-..- .+....++|.+|++.+.-...|.. =++|
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45666789999999999999764 59999999998653222 234568899999988775544321 2233
Q ss_pred -ECCC----CeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCCCeEEEEe--eCCCCcEEEEEEcCCCC
Q 005254 88 -DLST----LKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDGGFCTHYF--KGHKGVVSSILFHPDTD 157 (706)
Q Consensus 88 -d~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 157 (706)
.+.+ -+++..-+. ..--.++.-+.+.++|+.... .+.+++.+.+........ ....+--..+.- .++
T Consensus 205 h~~gt~~~~d~lvyeE~d-~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh--~~d 281 (682)
T COG1770 205 HRLGTPGSSDELVYEEKD-DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEH--GGD 281 (682)
T ss_pred EecCCCCCcceEEEEcCC-CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeee--cCc
Confidence 2222 122222221 122334445556677766543 356777777654322111 111111111111 123
Q ss_pred ceEEEEEecCC-eEEEEECCC---CeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCcce
Q 005254 158 KSLLFSGSDDA-TVRVWDLLA---KKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCK 223 (706)
Q Consensus 158 ~~~l~~~~~dg-~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~ 223 (706)
. +++-...+| ..++..... ...-+.+-.|...+.--.|+--..+|+....++ .|++++.++++..
T Consensus 282 ~-f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 282 R-FYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred E-EEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 2 222223333 344443322 222234445666666666666566677665443 6777887765543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.83 E-value=18 Score=35.88 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=60.0
Q ss_pred ccceEEcCCCCEEEEee-CCeEEEEEccCCeE--EEeec-----CCCccEEEEEEccCC------CEEEEEe--------
Q 005254 22 GGPLVVSSDGSFIACAC-GESINIVDLSNASI--KSTIE-----GGSDTITALALSPDD------KLLFSSG-------- 79 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~-~~~i~i~d~~~~~~--~~~l~-----~~~~~i~~l~~s~~~------~~l~s~~-------- 79 (706)
...|+|.|||++|++-- .+.|++++..++.. +..+. ........|+++|+- .+|....
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~ 111 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKE 111 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCC
Confidence 34899999999888876 47899998665432 22121 135678999999884 3444331
Q ss_pred --ccCeEEEEECCCC-------eE-EEEeec-cCCCeEEEEECCCCCEEEEecCC
Q 005254 80 --HSREIRVWDLSTL-------KC-LRSWKG-HDGPAIGMACHPSGGLLATAGAD 123 (706)
Q Consensus 80 --~d~~i~iwd~~~~-------~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d 123 (706)
....|.-|.+... +. +..+.. ....-..|+|.|||++.++.++.
T Consensus 112 ~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 112 LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555555321 11 111211 01223468899999877766544
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=89.78 E-value=20 Score=34.62 Aligned_cols=39 Identities=10% Similarity=0.350 Sum_probs=19.5
Q ss_pred CEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 601 LVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 601 ~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
.+.+||..+.+- +..+.. ..-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~--~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ--GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC--CceeeEEEEcCCEEEEEeccC
Confidence 456888776542 222211 111122334477778888765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.72 E-value=9.9 Score=37.18 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=58.8
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
..|..+..++.|..+|-+|.+|.+..+=.+....-..++..+..|+|=.|+-+.+ +.+.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC-------------------
Confidence 4677788888998888888887665543222222222332223344433332222 11111
Q ss_pred eCCCCcEEEEEEcCCC--CceEEEEEecCCeEEEEECCCCeeEEEee
Q 005254 141 KGHKGVVSSILFHPDT--DKSLLFSGSDDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 185 (706)
..-.+...+|+|++ +. .+..-+.|..|++||+.+.+.+....
T Consensus 164 --~~ltl~Qa~WHP~S~~D~-hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDP-HLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred --CceeeeeccccCCccCCc-eEEEEecCcEEEEEecCCcchhhccC
Confidence 22235667888875 32 26666789999999998777665443
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.58 E-value=26 Score=35.59 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=75.1
Q ss_pred CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC---eEEEEECCCCCE
Q 005254 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP---AIGMACHPSGGL 116 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~ 116 (706)
....++|. .|.++..+.........+..-++|.+++..+ ..+..+|+. |+.+......... =..+..-|+|++
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~ 203 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNL 203 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-E
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCE
Confidence 36888884 5666655543222222277789999887655 678888984 5655554422211 135677899998
Q ss_pred EEEecC-------------CCcEEEEECCCCeEEEEee--CCC-------------------------CcEEEEEEcCCC
Q 005254 117 LATAGA-------------DRKVLVWDVDGGFCTHYFK--GHK-------------------------GVVSSILFHPDT 156 (706)
Q Consensus 117 l~~~~~-------------d~~i~vw~~~~~~~~~~~~--~~~-------------------------~~v~~~~~~~~~ 156 (706)
|+.+.. .-.|..+| .+|+.+..+. .|- -.+.++.+.+..
T Consensus 204 L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d 282 (477)
T PF05935_consen 204 LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD 282 (477)
T ss_dssp EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence 887761 12366666 6777665532 110 137888888854
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (706)
+. +++++-.-..|...|..+++....+..+.
T Consensus 283 d~-iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 283 DS-IIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TE-EEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred Ce-EEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 43 45555555578888888888877775553
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=89.52 E-value=18 Score=33.86 Aligned_cols=61 Identities=16% Similarity=0.407 Sum_probs=45.8
Q ss_pred cCCCCEEEEeeCCeEEEEEccC--CeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECC
Q 005254 28 SSDGSFIACACGESINIVDLSN--ASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLS 90 (706)
Q Consensus 28 s~dg~~l~~~~~~~i~i~d~~~--~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~ 90 (706)
.-++++|+.|++..+++.+... ++..+.+ +...|+++...+.-+.|++-+ ....++.+++.
T Consensus 10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 3455799999999999999765 3344433 467999999999888877654 34569999984
|
Unpublished observations. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.43 E-value=26 Score=35.51 Aligned_cols=193 Identities=9% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCeEEEEecCC-------CeEEEEEecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCC-----CcE
Q 005254 453 LQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQD-----RTA 518 (706)
Q Consensus 453 ~~~~l~~~~~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d-----g~i 518 (706)
+..+++.|+.+ ..+..||+... .+........... ........-++.+.+.|+.+ ..+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--------~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv 246 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETR--------TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGF 246 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCC--------EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccE
Q ss_pred EEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEecCCCc-----EEEEEcCCCceEEEEe---ecccCEEEEEEE
Q 005254 519 CVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKT-----IKIWSISDGSCLKTFE---GHTSSVLRASFL 587 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~---~~~~~i~~~~~s 587 (706)
..||+.+.+-...-.. ....-...+..-++++.+.|+.++. +..||+.+.+-...-. ............
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE
Q ss_pred eCCCEEEEEeCC----CCEEEEECCCCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCC--------------cEEE
Q 005254 588 TRGAQIVSCGAD----GLVKLWTVRTGECIATYDK---HEDKIWALAVGKKTEMFATGGSDA--------------LVNL 646 (706)
Q Consensus 588 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~v 646 (706)
.+++.++.++.+ ..+.+||+.+.+-...-.. .......-+..-++++++.|+.+. .+.+
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Q ss_pred EECCchh
Q 005254 647 WHDSTAA 653 (706)
Q Consensus 647 w~~~~~~ 653 (706)
||+.+..
T Consensus 407 ~D~~t~~ 413 (470)
T PLN02193 407 LDTETLQ 413 (470)
T ss_pred EEcCcCE
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.39 E-value=26 Score=35.49 Aligned_cols=151 Identities=15% Similarity=0.026 Sum_probs=77.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCc---EEEEEEccCCCEEEEec--------------CCCcEEE
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG---IWSVEFSPVDQVVITAS--------------GDKTIKI 562 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~--------------~dg~i~i 562 (706)
+...++|.+++... ..+..+|+. |+.+....-.... =..+...|+|++|+.+. .| .|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEE
Confidence 56678898887655 778888875 5554443322211 24577888999888777 23 3666
Q ss_pred EEcCCCceEEEEee--cc-------------------------cCEEEEEEEe-CCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 563 WSISDGSCLKTFEG--HT-------------------------SSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 563 wd~~~~~~~~~~~~--~~-------------------------~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.| .+|+.+..+.. |- -.++++.+.+ ++.+|+++-.-..|...|..+++...
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 66 67777665431 10 1378899988 44455555445588999988998887
Q ss_pred EeccCCCcEE-----EEEE----------------cCCCCEEEEEeCCC---cEEEEECCchhHH
Q 005254 615 TYDKHEDKIW-----ALAV----------------GKKTEMFATGGSDA---LVNLWHDSTAAER 655 (706)
Q Consensus 615 ~~~~~~~~v~-----~~~~----------------s~~~~~l~~~~~dg---~i~vw~~~~~~~~ 655 (706)
.+-.|.+.-. -+.+ -+-|++-+.--.+| .|.++|=......
T Consensus 308 ilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~ 372 (477)
T PF05935_consen 308 ILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGY 372 (477)
T ss_dssp EES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGG
T ss_pred EeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCC
Confidence 7754432110 0111 01244555555677 8888887655543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.29 E-value=42 Score=37.62 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=52.9
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCc-cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
.+++|+|..+++|.+... .|.+|....-+.......-.. .++.+.+-...........+..+.+|.......+.
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~---- 114 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF---- 114 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee----
Confidence 489999999999999876 899997654443332221111 12222222212222223334455555543221111
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+...+++..-.+--.+ +.+ ..+.+++|++.-
T Consensus 115 ~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~ 145 (993)
T KOG1983|consen 115 LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLR 145 (993)
T ss_pred cCCcceeccCCCCcch-hcc-cCceeeEeeech
Confidence 2233333333332233 444 778888888753
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.91 E-value=6 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=28.5
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG 79 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~ 79 (706)
.+.-||+.+++....+.+-. --+.+++++|+++|+.+-
T Consensus 38 Rll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp EEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 59999999998765555533 348999999999888773
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.87 E-value=17 Score=32.72 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec--cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC---
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG--HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--- 134 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--- 134 (706)
..-+..+.++ +++...+..+.-++|.|+.+...-..+.. ..+--.++..+ |++..++..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCc
Confidence 4456677777 55666777777899999987653332221 12334445555 778877775555778888654
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
.+..++......-..++.|- +. .+.+..|+-+.+-|+..... +.... ....+.++..+++..+++.. +--
T Consensus 162 ~lagrya~~~~d~~~v~ISG--n~--AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~eg 234 (370)
T COG5276 162 QLAGRYALPGGDTHDVAISG--NY--AYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEG 234 (370)
T ss_pred eeeeeeccCCCCceeEEEec--Ce--EEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccc
Confidence 33444444555556677764 43 56666788899999865432 22221 12256677666664444433 333
Q ss_pred EEEEeCCCCc
Q 005254 212 VNLWDLRDYS 221 (706)
Q Consensus 212 i~~w~~~~~~ 221 (706)
+.+-|..+.+
T Consensus 235 vlivd~s~~s 244 (370)
T COG5276 235 VLIVDVSGPS 244 (370)
T ss_pred eEEEecCCCC
Confidence 5566655433
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=88.77 E-value=24 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=28.1
Q ss_pred cCCCCEEEEeeC------------CeEEEEEccCCeEEEeecCCCccEEEE-EE-ccCCCEEEEEecc
Q 005254 28 SSDGSFIACACG------------ESINIVDLSNASIKSTIEGGSDTITAL-AL-SPDDKLLFSSGHS 81 (706)
Q Consensus 28 s~dg~~l~~~~~------------~~i~i~d~~~~~~~~~l~~~~~~i~~l-~~-s~~~~~l~s~~~d 81 (706)
.-++++.++|+. +.+..||+.+.+-...-........+. +. .-++++.+.|+.+
T Consensus 61 ~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 61 AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 346777666653 247788988776433211111111111 12 3467777877653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.71 E-value=2.3 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEE-EEecc--CeEEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLF-SSGHS--REIRVW 87 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~-s~~~d--~~i~iw 87 (706)
+..+........+.+|||||++|+ ++..+ |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.43 E-value=28 Score=34.57 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=38.6
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE--EEEee-----CCCCcEEEEEEcCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFK-----GHKGVVSSILFHPDT 156 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 156 (706)
.-.....|+|.||+++|++--..|.|++++..++.. +..+. ........|+|+|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345667899999998777755469999998765532 21111 135678999999873
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.19 E-value=47 Score=36.81 Aligned_cols=143 Identities=6% Similarity=0.047 Sum_probs=78.2
Q ss_pred CEEEEeeC---------CCcEEEEeCCC-----ccE-----EEEE--eecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 507 SLVCTGSQ---------DRTACVWRLPD-----LVS-----VVTF--RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 507 ~~l~~~~~---------dg~i~i~d~~~-----~~~-----~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
.+|++|.. .|.+.|||+-. +++ ++.+ +..+++|..++=- +| +|+++. ...|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEe
Confidence 57777753 37899998632 222 1111 1245667665532 34 455543 345999999
Q ss_pred CCC-ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-eEEEEec--cCCCcEEEEEEcCCCC--EEEEEe
Q 005254 566 SDG-SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-ECIATYD--KHEDKIWALAVGKKTE--MFATGG 639 (706)
Q Consensus 566 ~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~~ 639 (706)
+.. ..+.. .--.-++.-.....-+++|+.|+--..|.+.-.+.. ..+..+. ...-.+.++.|--||. +++++.
T Consensus 1124 ~r~~~ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1124 DRDSELIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred ccCCcceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 433 33221 112223333333334556777766666666554332 2222221 2233567777766665 577888
Q ss_pred CCCcEEEEECCchh
Q 005254 640 SDALVNLWHDSTAA 653 (706)
Q Consensus 640 ~dg~i~vw~~~~~~ 653 (706)
.|+.|++|...++.
T Consensus 1203 a~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPEN 1216 (1366)
T ss_pred CCCcEEEEEeCCCC
Confidence 89999999877654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.56 E-value=28 Score=33.52 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=52.0
Q ss_pred CCCCEEEEeeCC-----------CcEEEEeCCCccEEEEEeec------CCcEEEEEEccCCCEEEEecCC---------
Q 005254 504 PNDSLVCTGSQD-----------RTACVWRLPDLVSVVTFRGH------KRGIWSVEFSPVDQVVITASGD--------- 557 (706)
Q Consensus 504 ~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~d--------- 557 (706)
-++++.+.|+.+ ..+.+||..+.+-.. +... .... +++. -++++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~gG~~ 212 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA-GFAV-VQGKIWVVYGFATSILPGGKS 212 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc-eEEE-ECCeEEEEeccccccccCCcc
Confidence 356777777754 247778877653322 1111 1111 1222 245655555432
Q ss_pred ----CcEEEEEcCCCceEEEEe-e--cccCEEEEEEEeCCCEEEEEeCC--------------CCEEEEECCCCe
Q 005254 558 ----KTIKIWSISDGSCLKTFE-G--HTSSVLRASFLTRGAQIVSCGAD--------------GLVKLWTVRTGE 611 (706)
Q Consensus 558 ----g~i~iwd~~~~~~~~~~~-~--~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 611 (706)
..+.+||..+.+-...-. + ........+...+++.++.|+.. ..+..+|+.+.+
T Consensus 213 ~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 213 DYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 358889987664332211 0 11111112233456677777752 257788887665
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=32 Score=33.70 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=10.0
Q ss_pred cEEEEeCCCceEEE
Q 005254 422 SVRLWDSESRCCVG 435 (706)
Q Consensus 422 ~i~i~d~~~~~~~~ 435 (706)
.+.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 57888988766544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 706 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-51 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-21 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-26 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 1e-22 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-24 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-21 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 6e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-24 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-21 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 6e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 9e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-22 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-22 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-22 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-22 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-22 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-22 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-22 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-22 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-22 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-22 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-22 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-22 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-20 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-22 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-19 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-18 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-21 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-21 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-12 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-20 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 9e-20 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-18 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-15 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 5e-14 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-18 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-17 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-17 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-14 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-13 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-17 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-16 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-16 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-16 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-16 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-14 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 8e-16 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 8e-16 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 8e-16 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-16 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 9e-16 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-16 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-15 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-15 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 3e-15 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-15 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-14 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 2e-13 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-14 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-13 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-11 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-13 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 7e-11 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-13 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-10 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-13 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 7e-11 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-13 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-12 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-08 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-12 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-08 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-06 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-12 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-07 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 4e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 3e-11 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 3e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 4e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 5e-11 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 9e-11 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 9e-10 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 6e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-08 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 6e-09 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-08 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 8e-09 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-08 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 9e-08 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 9e-07 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-07 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-07 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-07 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 4e-07 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 5e-07 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 6e-07 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 6e-07 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 6e-07 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 6e-07 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 1e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 5e-04 | ||
| 1l0q_A | 391 | Tandem Yvtn Beta-Propeller And Pkd Domains From An | 2e-05 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 3e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 1e-04 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 2e-04 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 5e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An Archaeal Surface Layer Protein Length = 391 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.91 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.78 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.74 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.74 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.73 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.72 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.72 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.71 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.71 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.71 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.7 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.7 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.68 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.67 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.67 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.65 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.65 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.64 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.64 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.63 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.63 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.63 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.61 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.59 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.56 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.56 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.55 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.54 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.54 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.54 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.51 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.5 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.5 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.49 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.49 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.48 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.46 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.44 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.43 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.42 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.39 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.38 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.35 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.32 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.31 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.3 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.28 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.27 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.27 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.25 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.23 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.21 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.15 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.15 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.13 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.12 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.1 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.08 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.08 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.07 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.06 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.01 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.01 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.96 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.94 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.92 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.86 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.86 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.86 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.85 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.84 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.83 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.79 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.76 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.75 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.73 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.73 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.71 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.7 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.62 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.62 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.59 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.57 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.55 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.52 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.51 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.51 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.5 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.48 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.41 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.4 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.39 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.37 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.35 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.35 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.34 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.22 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.19 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.16 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.12 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.06 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.02 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.98 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.98 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.97 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.96 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.96 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.92 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.9 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.84 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.77 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.76 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.64 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.64 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.49 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.48 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.39 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.39 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.32 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.28 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.2 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.16 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.15 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.15 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.14 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.13 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.13 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.12 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.11 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.1 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.04 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.92 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.88 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.69 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.55 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.36 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.28 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.11 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.07 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.75 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.51 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.23 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.96 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.64 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 93.12 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 92.35 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 92.25 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.74 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.97 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.49 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 88.8 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 88.52 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 86.6 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 85.97 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.7 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 84.55 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 83.33 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 82.67 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 82.51 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 81.53 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 80.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.43 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-74 Score=599.88 Aligned_cols=555 Identities=28% Similarity=0.505 Sum_probs=493.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|||||++||+++.+ .|+|||. +++.++.+.+|...|++++|+||+++||+++.|+.|+|||. +++++..+.+|.
T Consensus 21 ~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~ 98 (577)
T 2ymu_A 21 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 98 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCC
Confidence 79999999999999886 8999994 78888999999999999999999999999999999999995 678899999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
..|.+++|+|++++|++++.|+.+++|+.... ......++...+..+.++|++.. +++++.++.+++|+. ......
T Consensus 99 ~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 174 (577)
T 2ymu_A 99 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQT--IASASDDKTVKLWNR-NGQLLQ 174 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEECT-TSCEEE
T ss_pred CCEEEEEECCCCCEEEEEcCCCceeecccccc-eeeeccCCCCceeeeeeecCCcc--ceecccccceecccc-ceeeee
Confidence 99999999999999999999999999997654 45567789999999999999887 999999999999986 455566
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec-CcceeeeEEeeCCCCCcccccccccchhhhcccc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (706)
....|...+.++.++|++++|++++.|+.|++|+.. ++....+. ....+..+++.+++.
T Consensus 175 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~------------------- 234 (577)
T 2ymu_A 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ------------------- 234 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSS-------------------
T ss_pred eccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCC-------------------
Confidence 677899999999999999999999999999999964 44444443 456688888888876
Q ss_pred ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccce
Q 005254 262 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341 (706)
Q Consensus 262 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (706)
.+++++.++.+++|+.....+.. ...+...+..+.+.|+++.+++++.++.+.+|+....
T Consensus 235 ----~l~~~~~d~~i~~w~~~~~~~~~-----------~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----- 294 (577)
T 2ymu_A 235 ----TIASASDDKTVKLWNRNGQLLQT-----------LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----- 294 (577)
T ss_dssp ----CEEEEETTSCEEEECTTSCEEEE-----------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-----
T ss_pred ----EEEEEeCCCEEEEEeCCCCEEEE-----------EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----
Confidence 68899999999999976543322 2345667889999999999999999999999985432
Q ss_pred eeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 342 ELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
....+.+|...+.+++|.| ++..+++++.++.+++||.... ....+.+|...+.++. +.|+++. +++++.|+
T Consensus 295 ---~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~--~s~~g~~-l~~~~~dg 366 (577)
T 2ymu_A 295 ---LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVA--FSPDGQT-IASASDDK 366 (577)
T ss_dssp ---EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEE--ECTTSSE-EEEEETTS
T ss_pred ---EEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEE--ECCCCCE-EEEEeCCC
Confidence 2345678899999999987 7789999999999999998755 4557788999999998 8888887 99999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.+++||. +++.+..+..|...|.+++|+|+++ +|++++.|+.|++|+.... ....+..|...|++++
T Consensus 367 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~-----------~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 367 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQ-----------LLQTLTGHSSSVWGVA 433 (577)
T ss_dssp EEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCC-----------EEEEEECCSSCEEEEE
T ss_pred EEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCC-----------EEEEecCCCCCeEEEE
Confidence 9999995 5677888899999999999999988 8999999999999996432 5567788999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
|+||+++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|...|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 9999999999999999999996 56788889999999999999999999999999999999995 788999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
++++|+|+|++|++++.||.|++||. +++++..+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus 512 ~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999996 7899999999999999999999999999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-75 Score=604.53 Aligned_cols=584 Identities=18% Similarity=0.227 Sum_probs=484.5
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH 80 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~ 80 (706)
|..+.++..|++.|..++-. ..+++|+|||++||++.++.|++||+.+++....+.+|...|++++|||+|++||+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~ 79 (611)
T 1nr0_A 1 MSEFSQTALFPSLPRTARGT-AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 79 (611)
T ss_dssp -CCCEEEEEECCCCCCCTTC-CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCccccccEECCCCCcccCc-eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC
Confidence 55578899999888766532 23799999999999999999999999999988999999999999999999999999999
Q ss_pred cCeEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEEecCCC----cEEEEECCCCeEEEEeeCCCCcEEEEEEcC
Q 005254 81 SREIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADR----KVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154 (706)
Q Consensus 81 d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (706)
|++|+|||+.++ .....+.+|.++|.+++|+||+++|++++.+. .|++|| .++....+.+|...|.+++|+|
T Consensus 80 d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 80 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECS
T ss_pred CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECC
Confidence 999999999754 35567889999999999999999999987643 555555 6777788899999999999999
Q ss_pred CCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeee--------
Q 005254 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV-------- 226 (706)
Q Consensus 155 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~-------- 226 (706)
++. ..+++++.|++|++||..+++....+.+|...|.+++|+|+|++|++++.|+.|++||+.+++....+
T Consensus 158 ~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 158 SRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred CCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 865 24999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
.+...+..+.++|++. .+++++.|++|++||+.++......... ......
T Consensus 237 ~h~~~V~~v~~spdg~-----------------------~l~s~s~D~~v~lWd~~~~~~~~~~~~~-------~~~~~~ 286 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGT-----------------------KIASASADKTIKIWNVATLKVEKTIPVG-------TRIEDQ 286 (611)
T ss_dssp SSSSCEEEEEECTTSS-----------------------EEEEEETTSEEEEEETTTTEEEEEEECC-------SSGGGC
T ss_pred ccCCCEEEEEECCCCC-----------------------EEEEEeCCCeEEEEeCCCCceeeeecCC-------CCccce
Confidence 3556788999999886 7999999999999999988554332211 011112
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
...+.+ +++.++.++.++.+.+|+..... ....+.+|...+.+++|+| +++++++++.|+.|++||+.++
T Consensus 287 ~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~-------~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 287 QLGIIW--TKQALVSISANGFINFVNPELGS-------IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEEEEE--CSSCEEEEETTCCEEEEETTTTE-------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEE--cCCEEEEEeCCCcEEEEeCCCCC-------cceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC
Confidence 233333 78889999999999999865431 3345678999999999987 7889999999999999999998
Q ss_pred eeeEee-eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE---EeCCCcCeEEEEEecCCCeEEEEecC
Q 005254 387 SCSYVL-AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---GTGHMGAVGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 387 ~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~ 462 (706)
.....+ .+|...+.++. +.+++ . +++++.|+.+++|+...+..... ..........++++|++. .++++ .
T Consensus 357 ~~~~~~~~~h~~~v~~~~--~s~~~-~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~~~~-~ 430 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIK--TTSKG-D-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAA-C 430 (611)
T ss_dssp CEEECSSCSCSSCEEEEE--ECTTS-C-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEE-E
T ss_pred ceeeecccCCcceEEEEE--ECCCC-c-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc-EEEEE-e
Confidence 877665 67889999997 66544 4 88999999999999876532110 011234567899999987 34444 5
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE--EEEEeecCCcEE
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS--VVTFRGHKRGIW 540 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~ 540 (706)
++.+++|+.. .... ..+...+.+++|+|||++|++|+.|+.|++||+.++.. ... .+|...|+
T Consensus 431 ~~~v~~~~~~-------------~~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 431 YKHIAIYSHG-------------KLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp SSEEEEEETT-------------EEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred CceEEEEeCC-------------ceee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceE
Confidence 6789999821 1112 23778899999999999999999999999999987643 233 67999999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCC-CceEEE--EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-EE-EE
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISD-GSCLKT--FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-CI-AT 615 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~-~~ 615 (706)
+++|+|++++|++++.|++|++||+.+ ++++.. +.+|...|.+++|+|||++|++++.|++|++||+.+++ .+ ..
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~ 575 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchh
Confidence 999999999999999999999999987 555443 34499999999999999999999999999999998875 33 56
Q ss_pred eccC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 616 YDKH-EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 616 ~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+.+| .+.|.+++|+|+++ |++++.|++|++|++.
T Consensus 576 ~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 576 KGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred hccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 7789 89999999999998 9999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-70 Score=566.48 Aligned_cols=532 Identities=28% Similarity=0.498 Sum_probs=473.5
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+.|+||.+.|++++|||||++||+|+.|+.|+|||. ++++++++.+|...|.+++|+||+++||+++.|++|++||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 345779999999999999999999999999999999994 7899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
+ +++.+..+.+|...|.+++|+|+++. +++++.|+.+++|+... ........|...+.++.++|++..+++++.++
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQT--IASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCE--EEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccccc
Confidence 6 57788899999999999999999876 99999999999999754 45566778999999999999999999999999
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
.+++|+...............+..+.+.+++. .+++++.++.+++|+........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~l~~~~~d~~v~~w~~~~~~~~~-- 216 (577)
T 2ymu_A 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-----------------------TIASASDDKTVKLWNRNGQLLQT-- 216 (577)
T ss_dssp EEEEECTTSCEEEEEECCSSCEEEEEECTTSS-----------------------CEEEEETTSEEEEECTTSCEEEE--
T ss_pred ceeccccceeeeeeccCCCcceeeeeecCCCC-----------------------EEEEEcCCCEEEEEeCCCcEEEE--
Confidence 99999987766666666667788888888875 68899999999999976543322
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
...+...+..++++|++..+++++.++.+.+|+.... ....+.++...+.+++|.| ++..++
T Consensus 217 ---------~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~v~~~~-d~~~l~ 278 (577)
T 2ymu_A 217 ---------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVNGVAFRP-DGQTIA 278 (577)
T ss_dssp ---------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------EEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred ---------EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------EEEEEecCCCCEEEEEEcC-CCCEEE
Confidence 2235567889999999999999999999999985421 2345667889999999987 778999
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
+++.++.+++|+.. ++....+.+|...+.++. +.|++.. +++++.|+.|++||.... .+..+..|...+.+++|+
T Consensus 279 ~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~--~~~~~~~-l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 279 SASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA--FSPDGQT-IASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEETTSCEEEEETT-SCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEEC
T ss_pred EEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEE--ECCCCCE-EEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEEC
Confidence 99999999999965 566678899999999998 8888887 999999999999997654 556678899999999999
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
|+++ ++++++.|+.+++|+.... ....+..|...|++++|+|++++|++++.|+.|++||. +++.+.
T Consensus 354 ~~g~-~l~~~~~dg~v~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~ 420 (577)
T 2ymu_A 354 PDGQ-TIASASDDKTVKLWNRNGQ-----------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 420 (577)
T ss_dssp TTSS-EEEEEETTSEEEEEETTCC-----------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEE
T ss_pred CCCC-EEEEEeCCCEEEEEcCCCC-----------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEE
Confidence 9988 8999999999999996432 56667889999999999999999999999999999995 577888
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 610 (706)
.+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. ++
T Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred EecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 89999999999999999999999999999999996 67888899999999999999999999999999999999995 78
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 611 ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 611 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+++..+.+|...|++++|+||+++|++++.||.|++||.+
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999999999999999999999999999999999964
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-70 Score=571.94 Aligned_cols=573 Identities=17% Similarity=0.217 Sum_probs=494.3
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCC----eEEEeecCCCcc-EEEEEEcc--CCC
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNA----SIKSTIEGGSDT-ITALALSP--DDK 73 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~----~~~~~l~~~~~~-i~~l~~s~--~~~ 73 (706)
|....+++.|++.|...+ -...+++|+|||++|++++++.|.+||+.++ +....+.+|... |++++|+| +++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~ 79 (615)
T 1pgu_A 1 MSSISLKEIIPPQPSTQR-NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 79 (615)
T ss_dssp -CCEEEEEEECCCCCCCT-TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC
T ss_pred CCccchhhccCCCCCCcc-CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC
Confidence 778889999997775432 2234899999999999999999999999999 888999999999 99999999 999
Q ss_pred EEEEEeccCeEEEEECCCC--------eEEEEeeccCCCeEEEEECCCCCEEEEecCC----CcEEEEECCCCeEEEEee
Q 005254 74 LLFSSGHSREIRVWDLSTL--------KCLRSWKGHDGPAIGMACHPSGGLLATAGAD----RKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 74 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~ 141 (706)
+||+++.||.|++||+.++ +.+..+..|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.
T Consensus 80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 9999999999999999855 7788889999999999999999999999877 5677776 677888999
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc---eEEEEEEecC-CCEEEEEeCCCEEEEEeC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS---RVTSMAITSD-GSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~w~~ 217 (706)
+|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +++|++++.||.|++||+
T Consensus 158 ~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp SCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred cCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 99999999999998762 499999999999999999999999999999 9999999999 999999999999999999
Q ss_pred CCCcceeee-----cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 218 RDYSCKLTV-----PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 218 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
.+++.+..+ .....+..+.+. ++. .+++++.++.|++||+.++........
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-----------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQ-----------------------KFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSS-----------------------EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCC-----------------------EEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 999988887 556678888887 554 799999999999999998755433322
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.. ......+..+.+ +++..+++++.++.+.+|+.... .....+.++...+.+++| |+ ++++
T Consensus 293 ~~------~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~-~~----l~~~ 353 (615)
T 1pgu_A 293 DK------QQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHD-------EVLKTISGHNKGITALTV-NP----LISG 353 (615)
T ss_dssp CT------TCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEE-------EEEEEECCCSSCEEEEET-TT----TEEE
T ss_pred CC------CcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCC-------cEEEEEeCCCCCEEEEEe-cC----cEEE
Confidence 11 112234455555 48899999999999999998752 234566789999999999 65 9999
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
+.+|.+++|++. ... ..|...+.++. + +++.. +++++.|+.+++||+.+++.. ..+.+++++|+
T Consensus 354 ~~dg~i~~w~~~---~~~--~~~~~~v~~~~--~-~~~~~-l~~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~~ 417 (615)
T 1pgu_A 354 SYDGRIMEWSSS---SMH--QDHSNLIVSLD--N-SKAQE-YSSISWDDTLKVNGITKHEFG-------SQPKVASANND 417 (615)
T ss_dssp ETTSCEEETTTT---EEE--CCCCSCEEEEE--C-CSTTC-CEEEETTTEEEETTEEEEECS-------SCEEEEEECSS
T ss_pred CCCCeEEEEEch---hhc--CcccCceEEEE--E-CCCcE-EEEEeCCCCEEEEEcccCccc-------CCceEEEEcCC
Confidence 999999999998 332 88999999997 5 55666 899999999999998765433 26788999999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEE-E
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSV-V 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~-~ 530 (706)
+. +++++ .++.+.+|+...+. .... ..+...+.+++++ ++++++++. |+.|++||+.+++.. .
T Consensus 418 ~~-~~~~~-~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 418 GF-TAVLT-NDDDLLILQSFTGD----------IIKS-VRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp SE-EEEEE-TTSEEEEEETTTCC----------EEEE-EECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CC-EEEEe-CCCceEEEeccCCc----------eeee-cccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccc
Confidence 86 55555 88999999986542 2222 3478899999999 889999999 999999999987665 6
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-cccCEEEEEEEe----------CCCEEEEEeCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLT----------RGAQIVSCGAD 599 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~----------~~~~l~~~~~d 599 (706)
.+..|...|++++|+|++++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|++++.|
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d 562 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 562 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence 6778999999999999999999999999999999999999999988 999999999999 99999999999
Q ss_pred CCEEEEECCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 600 GLVKLWTVRTG-ECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 600 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
|.|++||+.++ +++..+.+|.+.|++++|+|+++ |++++.||.|++|+++.+
T Consensus 563 g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 563 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred CcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99999999998 78899999999999999999999 999999999999999753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-68 Score=605.85 Aligned_cols=572 Identities=20% Similarity=0.297 Sum_probs=504.3
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|||||++|++++.+ .|++||+.+++.+..+.+|...|++++|+|++++||+++.|+.|++||+.+++.+..+.+|.
T Consensus 620 ~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 699 (1249)
T 3sfz_A 620 HACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS 699 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 79999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECC--CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..|.+++|+| ++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+.+++.
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~--l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL--LASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE--EEEEESSSEEEEEEGGGTEE
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE--EEEEECCCeEEEEeCCCCcc
Confidence 9999999999 5568999999999999999999999999999999999999998876 99999999999999999887
Q ss_pred EEEeec-------------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec--CcceeeeEEeeCCCCCcc
Q 005254 181 VATLDK-------------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP--TYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 181 ~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 245 (706)
...+.. +...+.+++|+|+|+.+++++ ++.+.+|++.++.....+. ....+..+.+++++.
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--- 853 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--- 853 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT---
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC---
Confidence 766542 223688999999999999887 7899999999988777664 455678888888776
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
.+++++.+|.+++|+..++..... ...+...+..+.++|++..+++++.|
T Consensus 854 --------------------~l~~~~~dg~v~vwd~~~~~~~~~----------~~~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 854 --------------------LAVIALSQYCVELWNIDSRLKVAD----------CRGHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp --------------------EEEEECSSSCEEEEETTTTEEEEE----------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred --------------------EEEEEeCCCeEEEEEcCCCceeee----------cCCCccceEEEEECCCCCEEEEEeCC
Confidence 789999999999999998754332 23566789999999999999999999
Q ss_pred CceEEEEeeeccccceee-E-----------------------------EeeEecccCceeeEeeEeCCCCcEEEEEecC
Q 005254 326 QQLLLYTTVEVPEKKMEL-I-----------------------------LSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~-~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 375 (706)
+.+.+|+........... . ...........+.+++++| ++.++++++.+
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~ 982 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDED 982 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETT
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCC
Confidence 999999976422110000 0 0000112245677788876 78899999999
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
|.+.+|++.++.....+.+|...+.++. ++|+++. +++++.||.|++||+.+++... ...|...+.+++++|++
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~--~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-- 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQ--FTADGKT-LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-- 1056 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEE--ECSSSSC-EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS--
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEE--ECCCCCE-EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC--
Confidence 9999999999999999999999999998 8888887 9999999999999999988764 56789999999999976
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.+++++.|+.|++||+..+. ....+..|...|.+++|+|+++++++++.||.|++||+.+++.+..+.+|
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~----------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h 1126 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGR----------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTC----------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC
T ss_pred cEEEEECCCcEEEEECCCCc----------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC
Confidence 48899999999999998764 45667789999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE---------eecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF---------EGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
...|++++|+|++++|++++.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++ |.|++||
T Consensus 1127 ~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd 1204 (1249)
T 3sfz_A 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWN 1204 (1249)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEE
Confidence 999999999999999999999999999999998877654 56889999999999999999885 8999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 607 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+.+++.+..+..|...|.+++|+||+++|++++.||.+++|++.
T Consensus 1205 ~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1205 VATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp SSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 99999999999999999999999999999999999999999975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-66 Score=534.65 Aligned_cols=540 Identities=17% Similarity=0.223 Sum_probs=445.5
Q ss_pred CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC--e
Q 005254 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG--F 135 (706)
Q Consensus 58 ~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~--~ 135 (706)
.+.+.+.+++|+|||++||+++ ++.|++||+.+++....+.+|...|++++|+|||++||+|+.|++|+|||+.++ .
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~ 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce
Confidence 3466788999999999999987 569999999999999999999999999999999999999999999999999754 3
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCC
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDK 210 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 210 (706)
....+.+|.+.|.+++|+|+++. +++++.+ +.|++|| .++....+.+|...|.+++|+|++. .|++++.|+
T Consensus 95 ~~~~~~~~~~~v~~v~fs~dg~~--l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 95 LKTTIPVFSGPVKDISWDSESKR--IAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EEEEEECSSSCEEEEEECTTSCE--EEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eeEeecccCCceEEEEECCCCCE--EEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 45678899999999999999876 7777654 4677777 5667778899999999999999987 599999999
Q ss_pred EEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 211 VVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
.|++||..+++....+.. ...+..+.++|++. .+++++.|+.|++||..++.....
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-----------------------~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-----------------------LFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-----------------------EEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCC-----------------------EEEEEECCCcEEEEECCCCcEeee
Confidence 999999998887777764 45688999999886 789999999999999988754432
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
.... ......+...+..+.++|+++.+++++.|+.+.+|+........ .......+......+.+ ++..+
T Consensus 228 ~~~~---~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~l 297 (611)
T 1nr0_A 228 FEDD---SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK----TIPVGTRIEDQQLGIIW---TKQAL 297 (611)
T ss_dssp CBCT---TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECCSSGGGCEEEEEE---CSSCE
T ss_pred eccc---cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee----eecCCCCccceeEEEEE---cCCEE
Confidence 2110 01122567789999999999999999999999999986532110 11111122334455555 56789
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-eCCCcCeEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 448 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~ 448 (706)
++++.++.+++|+...+.....+.+|...+.+++ ++|+++. +++++.|+.|++||+.+++....+ ..|...|.+++
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~--~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALS--SSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE--EeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence 9999999999999999988888999999999998 8898887 999999999999999998877665 57899999999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
|++++ .+++++.|+.+++|++.......... ..........+++++|+|+.+++++ ++.+++|+ .++
T Consensus 375 ~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~dg~~~~~~~-~~~v~~~~--~~~- 441 (611)
T 1nr0_A 375 TTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKA-------VANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYS--HGK- 441 (611)
T ss_dssp ECTTS--CEEEEETTTEEEEECSSSSSSCTTSC-------CEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEE--TTE-
T ss_pred ECCCC--cEEEEEcCCceEEeecCCccccccce-------eeeecCCCCcEEEEeCCCcEEEEEe-CceEEEEe--CCc-
Confidence 99876 48899999999999987643211110 0112234567899999998888774 67899998 343
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
+..+. |...+.+++|+||+++|++|+.|++|++||+.++.. ... .+|...|++++|+|||++|++++.|+.|++||
T Consensus 442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 44554 888999999999999999999999999999987654 334 67999999999999999999999999999999
Q ss_pred CCC-CeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 607 VRT-GECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 607 ~~~-~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+.+ ++++.. +.+|...|.+++|+||+++|++++.|++|++|++.++.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 988 666554 33599999999999999999999999999999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-65 Score=579.99 Aligned_cols=543 Identities=20% Similarity=0.319 Sum_probs=473.9
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...+.+|...|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++++||+++.|+.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
+++.+..+.+|...|.+++|+|+++..++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 99999999999999999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcceeeecCcc--------------eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEE
Q 005254 213 NLWDLRDYSCKLTVPTYE--------------MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRM 278 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 278 (706)
++||+.+++....+.... .+..+.+++++. .+++++ ++.+.+
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-----------------------~l~~~~-~~~v~~ 823 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-----------------------KIIVAA-KNKVLL 823 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-----------------------EEEEEE-TTEEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC-----------------------EEEEEc-CCcEEE
Confidence 999999887766654332 233334444442 444444 789999
Q ss_pred EECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeE
Q 005254 279 WNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358 (706)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 358 (706)
|+..++...... ...+...+..+.++|++..+++++.++.+.+|+.... .....+.+|...+.+
T Consensus 824 ~d~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-------~~~~~~~~h~~~v~~ 887 (1249)
T 3sfz_A 824 FDIHTSGLLAEI---------HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-------LKVADCRGHLSWVHG 887 (1249)
T ss_dssp EETTTCCEEEEE---------ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-------EEEEEECCCSSCEEE
T ss_pred EEecCCCceeEE---------cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------ceeeecCCCccceEE
Confidence 999887544332 1245677899999999999999999999999998753 234556789999999
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCcee-----------------------------eEe--------eeCCcceEEE
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSC-----------------------------SYV--------LAGHSEIVLC 401 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-----------------------------~~~--------~~~~~~~i~~ 401 (706)
++|.| ++..+++++.++.+++|++.+... ... ...+...+.+
T Consensus 888 v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 888 VMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99987 778899999999999999653210 000 0112345667
Q ss_pred eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 402 LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
+. ++|+++. +++|+.+|.|++||+.+++....+..|...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 967 ~~--~sp~g~~-l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~------- 1035 (1249)
T 3sfz_A 967 CC--LSPHLEY-VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTG------- 1035 (1249)
T ss_dssp EE--ECTTSSE-EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSS-CEEEECSSSBEEEEETTTT-------
T ss_pred EE--EcCCCCE-EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC-------
Confidence 76 7888887 99999999999999999999999999999999999999988 8999999999999999865
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 561 (706)
.......|...+.+++++|++ .+++++.||.|++||+.+++....+.+|...|++++|+|++++|++++.||.|+
T Consensus 1036 ----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~ 1110 (1249)
T 3sfz_A 1036 ----DYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110 (1249)
T ss_dssp ----EEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCC
T ss_pred ----ceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEE
Confidence 233455788999999999976 577888999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe---------ccCCCcEEEEEEcCCC
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---------DKHEDKIWALAVGKKT 632 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~s~~~ 632 (706)
+||+.+++++..+.+|...|++++|+|+|++|++++.||.|++||+.+++.+..+ ..|.+.|++++|+||+
T Consensus 1111 iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp EECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred EEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999887665 5789999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhH
Q 005254 633 EMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
++|++++ |.|++||+.++..
T Consensus 1191 ~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1191 KTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SCEEEES--SSEEEBCSSSCBC
T ss_pred CEEEECC--CeEEEEECCCCce
Confidence 9999885 8999999988765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-62 Score=520.85 Aligned_cols=561 Identities=12% Similarity=0.096 Sum_probs=420.0
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|+|||++||+++.+ .|+|||..+.+....+. |..+|.+++|+| |++|++++.|+.|++||+.+++++..+. |.
T Consensus 22 ~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~ 98 (902)
T 2oaj_A 22 AAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP 98 (902)
T ss_dssp EEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC
Confidence 89999999999999877 89999998887766554 788999999999 8899999999999999999999999887 77
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT-----------HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
..|++++|+|++++|++|+.||.|++||+++++.. ..+.+|.++|.+++|+|++ ...+++|+.||.|
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-
Confidence 89999999999999999999999999999998764 2346799999999999963 2358899999999
Q ss_pred EEECCCCeeEEEeecc------------------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-----
Q 005254 172 VWDLLAKKCVATLDKH------------------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT----- 228 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~----- 228 (706)
+||+++++.+..+..| ...|.+++|+|+|++|++++.||.|++||+++++.+.....
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 9999999998888765 47799999999999999999999999999998876543111
Q ss_pred cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCcccee
Q 005254 229 YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 308 (706)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (706)
+... ... ......+...+.
T Consensus 257 ~~~~-------~~~------------------------------------------------------~~~~~~~~~~V~ 275 (902)
T 2oaj_A 257 NVPQ-------PDY------------------------------------------------------IRDSSTNAAKIS 275 (902)
T ss_dssp TSCC-------TTC------------------------------------------------------CCCCSSCCCEEE
T ss_pred CCCC-------CcC------------------------------------------------------CCCCccccCCee
Confidence 0000 000 000000112334
Q ss_pred EEEEcc----CCCeeE-EEeeC-----CceEEEEeeeccccc----------e-eeEEeeEe-cccCceeeEeeEeC---
Q 005254 309 AATVLP----SNQGLL-CVTAD-----QQLLLYTTVEVPEKK----------M-ELILSKRL-VGYNEEILDLKFLG--- 363 (706)
Q Consensus 309 ~~~~~~----~~~~l~-~~~~~-----~~~~~~~~~~~~~~~----------~-~~~~~~~~-~~~~~~v~~~~~~~--- 363 (706)
.+++.+ ++..++ +++.+ ..+.+|+....+... . .......+ ..+...+.++.+.+
T Consensus 276 ~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~s 355 (902)
T 2oaj_A 276 KVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQS 355 (902)
T ss_dssp EEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSC
T ss_pred EEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCC
Confidence 444432 222222 22222 245555432110000 0 00001111 13456777777765
Q ss_pred ------CCCcEEEEEecCCcEEEEeCCCceeeEe-------eeCCcceEEEeee--------------------------
Q 005254 364 ------EEEQYLAVATNIEQVQVYDLSSMSCSYV-------LAGHSEIVLCLDT-------------------------- 404 (706)
Q Consensus 364 ------~~~~~l~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~i~~~~~-------------------------- 404 (706)
.+...+++++.++.+++|++.++..... +..|...+.++.+
T Consensus 356 p~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~ 435 (902)
T 2oaj_A 356 PYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGV 435 (902)
T ss_dssp SHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSB
T ss_pred CCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCc
Confidence 2344788888999999999977643221 3344455555442
Q ss_pred ------eeecCCCEEEEEeeCCCcEEEEeCCCceEE----EE--Ee-----CCCcCeEEEEEecCCCeEEEEecCCCeEE
Q 005254 405 ------CALSSGKILIVTGSKDNSVRLWDSESRCCV----GV--GT-----GHMGAVGAVAFSKKLQNFLVSGSSDHTIK 467 (706)
Q Consensus 405 ------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~--~~-----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 467 (706)
.++|+++ ++++|+.|++|++||+.++... .. +. +|...|.+++|+|+++ +|++|+.||+|+
T Consensus 436 ~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~ 513 (902)
T 2oaj_A 436 RTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVV 513 (902)
T ss_dssp CCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred CCCCcccccccCc-EEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEE
Confidence 1345454 4999999999999999877421 11 11 7888999999999998 899999999999
Q ss_pred EEEecCCCCCCC-----------------------------------cccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 468 VWSFDGLSDDAE-----------------------------------QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 468 i~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
+|++...+.... ......+...+..|...|++++|+||| +||+|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence 999986531000 000112356677899999999999999 99999
Q ss_pred eCCCcEEEEeCCCccEEEE-----Ee-ecCCcEEEEEEc-----cCC---CEEEEecCCCcEEEEEc---CCCceEEEEe
Q 005254 513 SQDRTACVWRLPDLVSVVT-----FR-GHKRGIWSVEFS-----PVD---QVVITASGDKTIKIWSI---SDGSCLKTFE 575 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~-----~~-~~~~~v~~~~~s-----~~~---~~l~~~~~dg~i~iwd~---~~~~~~~~~~ 575 (706)
+.|++|++||+.+...+.. +. +|...|++++|+ ||| ++|++++.|++|++||+ .+|+....+.
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~ 672 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLM 672 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEE
T ss_pred eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEec
Confidence 9999999999988776542 22 788999999999 885 89999999999999999 7888888888
Q ss_pred ecc-----cCEEEEE-EE----------------------eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE-
Q 005254 576 GHT-----SSVLRAS-FL----------------------TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL- 626 (706)
Q Consensus 576 ~~~-----~~i~~~~-~s----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~- 626 (706)
+|. ++|..+. |+ +++..|+++ +..|++|++.++++.+....|...+.++
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~ 750 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLS 750 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEE
T ss_pred CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEE
Confidence 774 6777776 66 455444444 7789999999999998887777666676
Q ss_pred --E------EcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 627 --A------VGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 627 --~------~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
. |++++..|++++.||.|++|++.+.++.
T Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~ 787 (902)
T 2oaj_A 751 YISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQ 787 (902)
T ss_dssp EEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEeccccccccCceEEEEEeCCCcEEEEECcchHHH
Confidence 5 7889999999999999999999888754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-60 Score=495.98 Aligned_cols=522 Identities=16% Similarity=0.180 Sum_probs=451.1
Q ss_pred cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC----eEEEEeeccCCC-eEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 57 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL----KCLRSWKGHDGP-AIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 57 ~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~-v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
..|...|++++|+|+|++||+++ ++.|++||+.++ +.+..+.+|... |.+++|+| ++++|++++.|+.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 35788999999999999999998 789999999999 899999999999 99999999 99999999999999999
Q ss_pred ECCCC--------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 130 DVDGG--------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 130 ~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
|+.++ +....+..|...|.+++|+|+++. +++++.+ +.|++|| .++.+..+.+|...|.+++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR--LCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE--EEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCE--EEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC
Confidence 99754 777888899999999999999876 8888877 6888887 677888999999999999999
Q ss_pred cCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcc----eeeeEEeeCC-CCCcccccccccchhhhccccccceEEEEec
Q 005254 198 SDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYE----MVEAVCAIPP-GSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271 (706)
Q Consensus 198 ~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (706)
|+++ .+++++.|+.|++||+.+++....+..+. .+..+.+.++ +. .+++++
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------------~l~~~~ 226 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE-----------------------FVITVG 226 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC-----------------------EEEEEE
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC-----------------------EEEEEe
Confidence 9998 89999999999999999999888877543 5888999888 65 789999
Q ss_pred CCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecc
Q 005254 272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 351 (706)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (706)
.+|.|++||+.++........ ....+...+..+.+. ++..+++++.++.+.+|+....... .........
T Consensus 227 ~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---~~~~~~~~~ 296 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFLKYIED------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV---QKWTLDKQQ 296 (615)
T ss_dssp TTCCEEEEETTTCCEEEECCB------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---EEEECCTTC
T ss_pred CCCeEEEEECCCCCEeEEecc------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---EEEcCCCCc
Confidence 999999999988754433210 001456778999999 9999999999999999998753210 000000012
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
....+..+.+. ++..+++++.++.+++||+.+++....+.+|...+.++. + |+ +++++.||.|++|++.
T Consensus 297 ~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~--~-~~----l~~~~~dg~i~~w~~~-- 365 (615)
T 1pgu_A 297 LGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT--V-NP----LISGSYDGRIMEWSSS-- 365 (615)
T ss_dssp GGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE--T-TT----TEEEETTSCEEETTTT--
T ss_pred ccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE--e-cC----cEEECCCCeEEEEEch--
Confidence 34566777774 788999999999999999999999999999999999998 6 55 8999999999999998
Q ss_pred eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 432 CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
.+. ..|...|.+++| +++. .+++++.|+.+++|++..... ...+.+++++|++.++++
T Consensus 366 -~~~--~~~~~~v~~~~~-~~~~-~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 366 -SMH--QDHSNLIVSLDN-SKAQ-EYSSISWDDTLKVNGITKHEF-----------------GSQPKVASANNDGFTAVL 423 (615)
T ss_dssp -EEE--CCCCSCEEEEEC-CSTT-CCEEEETTTEEEETTEEEEEC-----------------SSCEEEEEECSSSEEEEE
T ss_pred -hhc--CcccCceEEEEE-CCCc-EEEEEeCCCCEEEEEcccCcc-----------------cCCceEEEEcCCCCEEEE
Confidence 333 789999999999 4444 799999999999999875321 115788999999988888
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceE-EEEeecccCEEEEEEEeC
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL-KTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~~ 589 (706)
+ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++.. ..+.+|...|++++|+|+
T Consensus 424 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 499 (615)
T 1pgu_A 424 T-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 499 (615)
T ss_dssp E-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT
T ss_pred e-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCC
Confidence 7 78899999999999888887 88999999999 889999999 999999999887665 667789999999999999
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEecc-CCCcEEEEEEcC----------CCCEEEEEeCCCcEEEEECCchh
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDK-HEDKIWALAVGK----------KTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~----------~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+++|++++.||.|++||+.+++++..+.+ |...|++++|+| ++++|++++.||.|++|++.++.
T Consensus 500 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 500 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999999999999988 999999999999 99999999999999999998763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=501.15 Aligned_cols=519 Identities=13% Similarity=0.101 Sum_probs=382.6
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+|...|++++|+|++++||+|+.||.|+|||..+.+....+. |..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 34799999999999999999999999999999999888776655 788999999999 8899999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE-----------EEeecccceEEEEEEecC-CCEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV-----------ATLDKHFSRVTSMAITSD-GSTL 203 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l 203 (706)
.+..+. |...|++++|+|+++. +++|+.||.|++||+++++.. ..+.+|.+.|.+++|+|+ +..+
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~--l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDW--MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSE--EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCE--EEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 988886 7789999999999876 999999999999999988764 233568899999999996 4689
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCc-------------------ceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTY-------------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
++++.||.| +||+++++....+..+ ..+..+.++|++.
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~---------------------- 224 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL---------------------- 224 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS----------------------
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC----------------------
Confidence 999999999 9999998877666543 2345555555543
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
.+++++.||.|++||..++........... ..+.. ...
T Consensus 225 -~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~-----~~~~~--------------------------------~~~---- 262 (902)
T 2oaj_A 225 -HIITIHEDNSLVFWDANSGHMIMARTVFET-----EINVP--------------------------------QPD---- 262 (902)
T ss_dssp -EEEEEETTCCEEEEETTTCCEEEEECSSCS-----CTTSC--------------------------------CTT----
T ss_pred -EEEEEECCCeEEEEECCCCcEEEEEeeccc-----ccCCC--------------------------------CCc----
Confidence 455556666666666554422211000000 00000 000
Q ss_pred EeeEecccCceeeEeeEeCC----CCcEEEEEecC-----CcEEEEeCC------------------CceeeEeee-CCc
Q 005254 345 LSKRLVGYNEEILDLKFLGE----EEQYLAVATNI-----EQVQVYDLS------------------SMSCSYVLA-GHS 396 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~-----~~i~~~d~~------------------~~~~~~~~~-~~~ 396 (706)
.......+...|.+++|.+. +..++++++.+ ..+.+|++. +++....+. .+.
T Consensus 263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 342 (902)
T 2oaj_A 263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTN 342 (902)
T ss_dssp CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSS
T ss_pred CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCC
Confidence 00000013457889999642 23567777554 378888842 122233333 345
Q ss_pred ceEEEeeeeeec---------CCCEEEEEeeCCCcEEEEeCCCceEEEE-------E-----------------------
Q 005254 397 EIVLCLDTCALS---------SGKILIVTGSKDNSVRLWDSESRCCVGV-------G----------------------- 437 (706)
Q Consensus 397 ~~i~~~~~~~~~---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~----------------------- 437 (706)
..+..+. +.+ .+...+++++.||.|++||+.++..... +
T Consensus 343 ~~v~~~~--~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 343 VPIVNIL--PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SCEEEEE--ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CceEEEE--ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 5666554 332 1222478888999999999977643321 1
Q ss_pred -----------eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE-E-----eecCcceEEE
Q 005254 438 -----------TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV-V-----AAHGKDINSL 500 (706)
Q Consensus 438 -----------~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~i~~~ 500 (706)
.+|...+.+++|+|+++ +|++++.|++|++||+..+..... ..... + .+|...|.++
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrlWd~~~g~~~~~-----~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRIYDASHGDIQDN-----ASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEEEESSCCTTTTT-----BCEEEEHHHHTTCSSSCCEEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEEEECCCccccCC-----ceEEeechhhcCCCCCCceeEE
Confidence 22333444455677766 899999999999999987632110 00111 1 1688899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCcc---------------------------------------------EEEEEeec
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLV---------------------------------------------SVVTFRGH 535 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------------~~~~~~~~ 535 (706)
+|+||+++||+|+.||+|++||+.+++ ++..+.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999999999999997652 36778889
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-----Ee-ecccCEEEEEEE-----eCC---CEEEEEeCCCC
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-----FE-GHTSSVLRASFL-----TRG---AQIVSCGADGL 601 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~~~~s-----~~~---~~l~~~~~dg~ 601 (706)
.+.|++++||||| +||+|+.|++|++||++++..+.. +. +|...|++++|+ ||| ++|++|+.|++
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 9999999999999 999999999999999988776542 32 788999999999 885 89999999999
Q ss_pred EEEEEC---CCCeEEEEeccCC-----CcEEEEE-Ec----------------------CCCCEEEEEeCCCcEEEEECC
Q 005254 602 VKLWTV---RTGECIATYDKHE-----DKIWALA-VG----------------------KKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 602 i~iwd~---~~~~~~~~~~~~~-----~~v~~~~-~s----------------------~~~~~l~~~~~dg~i~vw~~~ 650 (706)
|++||+ .+|+.+..+.+|. ++|.++. |+ +++..|++ + +..|++|++.
T Consensus 654 v~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~-~~~ir~~~~~ 731 (902)
T 2oaj_A 654 VITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G-FDDIRLITLG 731 (902)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-SSEEEEECTT
T ss_pred EEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-e-ccceEEEeCc
Confidence 999999 8899888887764 6777776 65 44544443 3 7789999999
Q ss_pred chhHH
Q 005254 651 TAAER 655 (706)
Q Consensus 651 ~~~~~ 655 (706)
+++..
T Consensus 732 ~~k~~ 736 (902)
T 2oaj_A 732 KSKST 736 (902)
T ss_dssp CCCEE
T ss_pred cccce
Confidence 86543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=456.36 Aligned_cols=457 Identities=18% Similarity=0.244 Sum_probs=386.0
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+.+.+|...|++++|+|++++||+++.+|.|+|||+.+++.+..+.+|..+|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGR 208 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 208 (706)
+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+.++ .....+.+|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCE--EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 9999999999999999999999999876 999999999999999887 67778889999999999999 8889999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
||.|++||+.++.....+..
T Consensus 162 dg~v~vwd~~~~~~~~~~~~------------------------------------------------------------ 181 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTT------------------------------------------------------------ 181 (814)
T ss_dssp TSEEEEEETTCSSCSEEEEC------------------------------------------------------------
T ss_pred CCeEEEEECCCCcceeEEec------------------------------------------------------------
Confidence 99999999876543322211
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC-CCCc
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQ 367 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 367 (706)
.+...+..++|.| +++.
T Consensus 182 --------------------------------------------------------------~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 182 --------------------------------------------------------------GQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp --------------------------------------------------------------CCTTCCCEEEECCSTTCC
T ss_pred --------------------------------------------------------------CCCCCEEEEEEEECCCCC
Confidence 1123455556655 3677
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++++++.++.+++||+.+++....+.+|...+.++. ++|++.. +++++.||.|++||..+++.+..+..+...+.++
T Consensus 200 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (814)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE--EcCCCCE-EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence 899999999999999999999999999999999998 8888886 9999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc---------------------------------ccceeEEEeecC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM---------------------------------NLKAKAVVAAHG 494 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~ 494 (706)
+|+|++..++++.+.++.+.+|++........... ..........+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (814)
T 3mkq_A 277 ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVD 356 (814)
T ss_dssp EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCS
T ss_pred EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCc
Confidence 99999876656666677889998765321110000 000112233455
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
..+.+++|+|+|+++++++ ++.+.+|++...... +.+.+.+++|+|+++++++++.+|.|++|+. +
T Consensus 357 ~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~ 422 (814)
T 3mkq_A 357 VFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------F 422 (814)
T ss_dssp SCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEET--------T
T ss_pred cCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------C
Confidence 6789999999999999998 899999998755432 3456889999999999999999999999963 3
Q ss_pred eecccCEEEEEEEeCC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE------eCCCcEE
Q 005254 575 EGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG------GSDALVN 645 (706)
Q Consensus 575 ~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------~~dg~i~ 645 (706)
.+|...+.++.|+|++ ++|++++.|+.|++||+.+++.+..+..|.. .+.|+|||++|+++ +.++.+.
T Consensus 423 ~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~ 499 (814)
T 3mkq_A 423 KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYT 499 (814)
T ss_dssp EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEE
T ss_pred CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEE
Confidence 5677888999999998 6899999999999999999999999988765 89999999999999 6555444
Q ss_pred EEECCch
Q 005254 646 LWHDSTA 652 (706)
Q Consensus 646 vw~~~~~ 652 (706)
+| ...+
T Consensus 500 ~~-~~~~ 505 (814)
T 3mkq_A 500 LL-FNKD 505 (814)
T ss_dssp EE-ECHH
T ss_pred EE-echH
Confidence 44 4433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=441.37 Aligned_cols=476 Identities=14% Similarity=0.163 Sum_probs=391.4
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+++|+|||++||+++.+ .|.|||+.+++.+..+.+|..+|++++|+|++++|++++.||.|++||+.+++.+..+.+|.
T Consensus 18 ~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 97 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 79999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
..|.+++|+|++++|++++.|+.|++||++++ .....+.+|...|.+++|+| +++ .+++++.||.|++||+.+++.
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASGCLDRTVKVWSLGQSTP 175 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE--EEEEEETTSEEEEEETTCSSC
T ss_pred CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcc
Confidence 99999999999999999999999999999987 77788889999999999999 554 499999999999999998887
Q ss_pred EEEeeccc-ceEEEEEEec--CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhh
Q 005254 181 VATLDKHF-SRVTSMAITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 181 ~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
...+..+. ..+.+++|+| ++.+|++++.||.|++||+.+++....+
T Consensus 176 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------------------------------- 224 (814)
T 3mkq_A 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL------------------------------- 224 (814)
T ss_dssp SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-------------------------------
Confidence 77776555 8999999999 9999999999999999998765533221
Q ss_pred ccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 258 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
T Consensus 225 -------------------------------------------------------------------------------- 224 (814)
T 3mkq_A 225 -------------------------------------------------------------------------------- 224 (814)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 338 EKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
.++...+.+++|.| ++.++++++.+|.|++||+.+++....+..+...+.++. +.|++..++++.
T Consensus 225 ------------~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~ 289 (814)
T 3mkq_A 225 ------------EGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA--THPTGRKNYIAS 289 (814)
T ss_dssp ------------ECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE--ECTTCGGGEEEE
T ss_pred ------------cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE--EccCCCceEEEE
Confidence 23445667777776 667899999999999999999999999999999999998 888887644555
Q ss_pred eCCCcEEEEeCCCce----------EEE---------------------------------EEeCCCcCeEEEEEecCCC
Q 005254 418 SKDNSVRLWDSESRC----------CVG---------------------------------VGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~----------~~~---------------------------------~~~~~~~~v~~~~~~~~~~ 454 (706)
+.++.+.+|++.... .+. ....+...+.+++|+|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 369 (814)
T 3mkq_A 290 GFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR 369 (814)
T ss_dssp EETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS
T ss_pred EeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC
Confidence 557778888865432 111 1123445678999999988
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
++++++ ++.+.+|++... . ..+...+.+++|+|+++++++++.+|.|++|+. +.+
T Consensus 370 -~la~~~-~~~~~i~~~~~~-----------~----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~ 424 (814)
T 3mkq_A 370 -FVTVVG-DGEYVIYTALAW-----------R----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKE 424 (814)
T ss_dssp -EEEEEE-TTEEEEEETTTT-----------E----EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEE
T ss_pred -EEEEec-CCEEEEEECccc-----------c----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCC
Confidence 677776 899999997532 1 112356889999999999999999999999963 356
Q ss_pred cCCcEEEEEEccCC---CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEE------eCCCCEEEE
Q 005254 535 HKRGIWSVEFSPVD---QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC------GADGLVKLW 605 (706)
Q Consensus 535 ~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------~~dg~i~iw 605 (706)
|...+.+++|+|++ ..|++++.|+.|++||+.+++.+..+..|.. .+.|+|||++|+++ +.++.+.+|
T Consensus 425 ~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 425 VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 88889999999998 6889999999999999999999999987765 89999999999999 554444343
Q ss_pred E-----------------------------------------------CCCCeE-------EEEeccCCCcEEEEEEcCC
Q 005254 606 T-----------------------------------------------VRTGEC-------IATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 606 d-----------------------------------------------~~~~~~-------~~~~~~~~~~v~~~~~s~~ 631 (706)
. ...++. ...+.....++..+.|.++
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (814)
T 3mkq_A 502 FNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLAR 581 (814)
T ss_dssp ECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGG
T ss_pred echHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeCCEEEEEcCCCeEEEEeCCeeEEEEECCccEEEEEEEec
Confidence 2 100110 1111123445556667788
Q ss_pred CCEEEEEeCCCcEEEEECCchhHH
Q 005254 632 TEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 632 ~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
++.++....++.+..|++......
T Consensus 582 ~~~l~~~d~~~~~~~~~l~~~~~~ 605 (814)
T 3mkq_A 582 DNKVYLADREVHVYGYEISLEVLE 605 (814)
T ss_dssp GTEEEEECTTCCEEEEECCHHHHH
T ss_pred CCEEEEEcCCCCEEEEEECcHHHH
Confidence 888988999999999999876544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=373.14 Aligned_cols=310 Identities=25% Similarity=0.474 Sum_probs=265.7
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
...+.+|..+|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
+++++..+.+|...|.+++|+|+++. +++|+.|+.|++||++++.++..+.+|...|.++.|+|++.+|++++.|+.|
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~--l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCE--EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 99999999999999999999998876 9999999999999999999999999999999999999999999999999988
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+.+++..
T Consensus 259 ~vwd~~~~~~~--------------------------------------------------------------------- 269 (410)
T 1vyh_C 259 RVWVVATKECK--------------------------------------------------------------------- 269 (410)
T ss_dssp EEEETTTCCEE---------------------------------------------------------------------
T ss_pred EEEECCCCcee---------------------------------------------------------------------
Confidence 88887543211
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
T Consensus 270 -------------------------------------------------------------------------------- 269 (410)
T 1vyh_C 270 -------------------------------------------------------------------------------- 269 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (706)
..+..|...|.+++|+|+
T Consensus 270 --------------------------------------------------------------~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 270 --------------------------------------------------------------AELREHRHVVECISWAPE 287 (410)
T ss_dssp --------------------------------------------------------------EEECCCSSCEEEEEECCS
T ss_pred --------------------------------------------------------------eEecCCCceEEEEEEcCc
Confidence 111233444555555554
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
+... ......+ .......+++.+|++|+.|+.|++||+.++..+..+
T Consensus 288 ~~~~-~~~~~~~--------------------------------~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 288 SSYS-SISEATG--------------------------------SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp CGGG-GGGGCCS--------------------------------CC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred cccc-chhhhcc--------------------------------ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 3310 0000000 000112235789999999999999999999999999
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=348.03 Aligned_cols=290 Identities=24% Similarity=0.384 Sum_probs=267.8
Q ss_pred eEecccCceeeEeeEeCC---CCcEEEEEecCCcEEEEeCCCcee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 347 KRLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
....+|.+.|.+++|.++ ++.++++++.|+.|++|++..... ...+.+|...+.+++ +.+++.. +++++.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~--~~~~~~~-l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPI-AASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE--ECSSSSE-EEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEE--ECCCCCE-EEEEeCCC
Confidence 456689999999999874 567999999999999999887654 456889999999998 7787776 99999999
Q ss_pred cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
.|++||+.+++.+..+..+...+.+++|+|+++ +|++++.|+.|++|++.... ....+..+...+.+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~----------~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK----------KEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCS----------EEEEEECSSSCEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCc----------eeEEecCCCceEEEEE
Confidence 999999999999999999999999999999988 89999999999999998653 4556677888999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
|+|++++|++++.||.|++||+.+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+.++++...+.+|...|
T Consensus 172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v 251 (321)
T 3ow8_A 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWV 251 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.+++|+|++++|++++.|+.|++||+.+++++..+.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus 252 ~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=344.31 Aligned_cols=292 Identities=20% Similarity=0.353 Sum_probs=258.4
Q ss_pred eEEEeecCCCccEEEEEEccC----CCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 51 SIKSTIEGGSDTITALALSPD----DKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
.....+++|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.+++. ...+.+|...|.+++|+|++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 344667899999999999985 67999999999999999987754 456889999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
+|++||+.+++.+..+..|...+.+++|+|+++. +++++.||.|++||+++++....+..|...+.+++|+|++++|+
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY--LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE--EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE--EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 9999999999999999999999999999999876 99999999999999999998888888888899999999888888
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.||.|++||++++
T Consensus 181 sg~~dg~i~iwd~~~~---------------------------------------------------------------- 196 (321)
T 3ow8_A 181 SGAIDGIINIFDIATG---------------------------------------------------------------- 196 (321)
T ss_dssp EEETTSCEEEEETTTT----------------------------------------------------------------
T ss_pred EEcCCCeEEEEECCCC----------------------------------------------------------------
Confidence 8888887777776432
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (321)
T 3ow8_A 197 -------------------------------------------------------------------------------- 196 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+.+..+..|...|
T Consensus 197 -------------------------------------------------------------------~~~~~~~~h~~~v 209 (321)
T 3ow8_A 197 -------------------------------------------------------------------KLLHTLEGHAMPI 209 (321)
T ss_dssp -------------------------------------------------------------------EEEEEECCCSSCC
T ss_pred -------------------------------------------------------------------cEEEEEcccCCce
Confidence 2222234566788
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|+|+++ +|++++.|+.|++||++... ....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 210 ~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 210 RSLTFSPDSQ-LLVTASDDGYIKIYDVQHAN----------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp CEEEECTTSC-EEEEECTTSCEEEEETTTCC----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eEEEEcCCCC-EEEEEcCCCeEEEEECCCcc----------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 8999999987 89999999999999997653 556778899999999999999999999999999999999
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
+++.+..+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=346.42 Aligned_cols=290 Identities=23% Similarity=0.368 Sum_probs=257.3
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
.+....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE
Q 005254 130 DVDGG----FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 130 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
++.++ +....+.+|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|.+.|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 99875 45667889999999999998754 899999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
++.|+.|++||++++.
T Consensus 202 g~~d~~v~~wd~~~~~---------------------------------------------------------------- 217 (340)
T 1got_B 202 GACDASAKLWDVREGM---------------------------------------------------------------- 217 (340)
T ss_dssp EETTSCEEEEETTTCS----------------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCe----------------------------------------------------------------
Confidence 9999988888865321
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
T Consensus 218 -------------------------------------------------------------------------------- 217 (340)
T 1got_B 218 -------------------------------------------------------------------------------- 217 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
.+..+..|...|.
T Consensus 218 -------------------------------------------------------------------~~~~~~~h~~~v~ 230 (340)
T 1got_B 218 -------------------------------------------------------------------CRQTFTGHESDIN 230 (340)
T ss_dssp -------------------------------------------------------------------EEEEECCCSSCEE
T ss_pred -------------------------------------------------------------------eEEEEcCCcCCEE
Confidence 1112235677889
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
+++|+|++. ++++++.|+.|++||+.... ...... .+...|++++|+|+|++|++|+.||.|++||+
T Consensus 231 ~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 231 AICFFPNGN-AFATGSDDATCRLFDLRADQ----------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEETTTTE----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEcCCCC-EEEEEcCCCcEEEEECCCCc----------EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 999999987 89999999999999997642 222222 22347999999999999999999999999999
Q ss_pred CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
.+++....+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999996
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=362.55 Aligned_cols=358 Identities=16% Similarity=0.200 Sum_probs=294.4
Q ss_pred cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEEEEC----CCCe------EEEEeeC-------
Q 005254 81 SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDV----DGGF------CTHYFKG------- 142 (706)
Q Consensus 81 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~vw~~----~~~~------~~~~~~~------- 142 (706)
...+.+|+++..........|...|.+++|+|+++ +||+++.|+.|++|++ .+++ ....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ----------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred ccccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 33456888877766666666889999999999999 9999999999999999 8888 4555554
Q ss_pred ---CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 143 ---HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 143 ---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
|...|.+++|+|+++. +++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 104 ~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDGNS--IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp ----CBCEEEEEECTTSSE--EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred ccCCCCceEEEEEcCCCCE--EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 6889999999998876 99999999999999 67888889999999999999999999999999999999999876
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++....+....
T Consensus 181 ~~~~~~~~~~~--------------------------------------------------------------------- 191 (425)
T 1r5m_A 181 GTVMQHFELKE--------------------------------------------------------------------- 191 (425)
T ss_dssp TEEEEEECCC----------------------------------------------------------------------
T ss_pred CcEEEEeeccc---------------------------------------------------------------------
Confidence 55433221100
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 192 -------------------------------------------------------------------------------- 191 (425)
T 1r5m_A 192 -------------------------------------------------------------------------------- 191 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.....+. . .........+.+++|++++ .+++
T Consensus 192 -----------------~~~~~~~----------~--------------------~~~~~~~~~~~~~~~~~~~--~~~~ 222 (425)
T 1r5m_A 192 -----------------TGGSSIN----------A--------------------ENHSGDGSLGVDVEWVDDD--KFVI 222 (425)
T ss_dssp -------------------------------------------------------------CCCBSCCEEEETT--EEEE
T ss_pred -----------------cCcccee----------e--------------------ccccCCcceeeEEEEcCCC--EEEE
Confidence 0000000 0 0001122347778888875 5889
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcE
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
++.++.|++||+.... ....+..|...|.+++|+|++++|++++.||.|++||+.+++....+..|...|
T Consensus 223 ~~~~g~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 292 (425)
T 1r5m_A 223 PGPKGAIFVYQITEKT----------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSI 292 (425)
T ss_dssp ECGGGCEEEEETTCSS----------CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCE
T ss_pred EcCCCeEEEEEcCCCc----------eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccE
Confidence 9999999999998653 445566789999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--------
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------- 611 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------- 611 (706)
.+++|+|++ ++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+.+++
T Consensus 293 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 371 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYG 371 (425)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------
T ss_pred EEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeec
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred ------------EEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 612 ------------CIATYDKHED--KIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 612 ------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
++..+..|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 372 NRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8999999977 99999999999999999999999999986
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=363.85 Aligned_cols=356 Identities=14% Similarity=0.187 Sum_probs=289.2
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCC-EEEEEeccCeEEEEEC----CCCe------EEEEeec---------
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDK-LLFSSGHSREIRVWDL----STLK------CLRSWKG--------- 100 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~-~l~s~~~d~~i~iwd~----~~~~------~~~~~~~--------- 100 (706)
.+.+|+.+..........|...|++++|+|+++ +||+++.||.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 456788776655555556779999999999999 9999999999999999 8888 5555554
Q ss_pred -cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 101 -HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 101 -~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
|...|.+++|+|++++|++++.|+.|++|| .+++.+..+..|...|.+++|+|+++. +++++.||.|++||+.+++
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH--IISMDVENVTILWNVISGT 182 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE--EEEEETTCCEEEEETTTTE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE--EEEEecCCeEEEEECCCCc
Confidence 678999999999999999999999999999 678888899999999999999998876 9999999999999999998
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
.+..+..+......+.... .. +
T Consensus 183 ~~~~~~~~~~~~~~~~~~~-------~~-------------------------------~-------------------- 204 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAEN-------HS-------------------------------G-------------------- 204 (425)
T ss_dssp EEEEECCC------------------------------------------------------------------------
T ss_pred EEEEeeccccCccceeecc-------cc-------------------------------C--------------------
Confidence 8887765543211100000 00 0
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (425)
T 1r5m_A 205 -------------------------------------------------------------------------------- 204 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
....+.++. +.++ .. +++++.
T Consensus 205 -------------------------------------------------------~~~~~~~~~--~~~~-~~-~~~~~~ 225 (425)
T 1r5m_A 205 -------------------------------------------------------DGSLGVDVE--WVDD-DK-FVIPGP 225 (425)
T ss_dssp --------------------------------------------------------CCCBSCCE--EEET-TE-EEEECG
T ss_pred -------------------------------------------------------CcceeeEEE--EcCC-CE-EEEEcC
Confidence 000011111 3333 33 778888
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
+|.|++||+.+++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+.... ....+..|...|.+
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGN----------SQNCFYGHSQSIVS 294 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBS----------CSEEECCCSSCEEE
T ss_pred CCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc----------cceEecCCCccEEE
Confidence 89999999998888888889999999999999987 89999999999999987653 45556678999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc----------
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------- 569 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------- 569 (706)
++|+|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 373 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNR 373 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---------
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccc
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred ----------eEEEEeeccc--CEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 570 ----------CLKTFEGHTS--SVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 570 ----------~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
++..+..|.. .|++++|+|++++|++++.||.|++||++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 374 DGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 8899999976 99999999999999999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=357.50 Aligned_cols=288 Identities=26% Similarity=0.448 Sum_probs=271.8
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+.+|..+|.+++|.| ++.++++++.|+.|++||+.+++....+.+|...|.++. +.++++. +++|+.|++|++|
T Consensus 102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~--~~~~~~~-l~sgs~D~~i~iw 177 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW 177 (410)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEE--EcCCCCE-EEEEeCCCeEEEE
Confidence 34568999999999988 678999999999999999999999999999999999998 8888876 9999999999999
Q ss_pred eCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
|+.+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+..+. ....+.+|...|.++.++|++
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~----------~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY----------CVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECTTS
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEEeCCCccEEEEEECCCC
Confidence 9999999999999999999999999987 89999999999999998653 566778899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC--------------------CCEEEEecCCCcEEEEEcC
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV--------------------DQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~ 566 (706)
.++++++.|+.|++||+.+++....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999999999999999999999999999999999996 6789999999999999999
Q ss_pred CCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 646 (706)
+++++..+.+|...|++++|+|+|++|++++.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||.|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC
Q 005254 647 WHD 649 (706)
Q Consensus 647 w~~ 649 (706)
|++
T Consensus 407 W~~ 409 (410)
T 1vyh_C 407 WEC 409 (410)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=350.14 Aligned_cols=321 Identities=18% Similarity=0.195 Sum_probs=237.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec------cCeEEEEECCCCeEEE-
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH------SREIRVWDLSTLKCLR- 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~- 96 (706)
.+.+.+++.++..........|+++... ..+|...|++++|||||++||+++. |+.|++|+..++....
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 4666777777666666688999986443 3579999999999999999999997 7889999998776433
Q ss_pred ---EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE----EeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 97 ---SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH----YFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 97 ---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
...+|...|.+++|+|+++++ +++.|++|++||+.+++... ...+|...|.+++|+|+++. |++|+.|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~--l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ--AVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE--EEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE--EEEEeCCCe
Confidence 345688999999999998655 56779999999998876543 34479999999999999876 999999999
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccc
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (706)
|++||+++++.+..+.+|...|.+++|++++. ++++++.||.|++||+++++....+.
T Consensus 163 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------- 221 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--------------------- 221 (357)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---------------------
Confidence 99999999999999999999999999999875 78899999999999987654332211
Q ss_pred ccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCce
Q 005254 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328 (706)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (357)
T 4g56_B 222 -------------------------------------------------------------------------------- 221 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec
Q 005254 329 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408 (706)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (706)
...+...+.++. ++|
T Consensus 222 ---------------------------------------------------------------~~~~~~~v~~v~--~sp 236 (357)
T 4g56_B 222 ---------------------------------------------------------------FCASDTIPTSVT--WHP 236 (357)
T ss_dssp ---------------------------------------------------------------CTTCCSCEEEEE--ECT
T ss_pred ---------------------------------------------------------------eccccccccchh--hhh
Confidence 112333455555 777
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
++..++++|+.|+.|++||+.+++.+..+..|...|++++|+|++..+|++++.|++|++||++.+ ...
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-----------~~~ 305 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS-----------EVF 305 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC-----------EEE
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC-----------cEe
Confidence 777669999999999999999999999999999999999999998778999999999999998765 333
Q ss_pred EEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccE
Q 005254 489 VVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
...+|...|++++|+| ++.+|++++.||+|++|++.+...
T Consensus 306 ~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 306 RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 4457999999999998 899999999999999999976543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=333.26 Aligned_cols=295 Identities=22% Similarity=0.347 Sum_probs=257.6
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+..+++.+|.+.|++++|+|++++|++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEec-CCCEEEEEeC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITS-DGSTLISAGR 208 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 208 (706)
+.+++.+..+.+|...|.+++|+|+++. +++|+.|++|++||++++ .....+.+|...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY--VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCE--EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 9999999999999999999999998876 999999999999999887 55677889999999999999 6789999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.|++||+.+......+.
T Consensus 162 D~~v~iwd~~~~~~~~~~~------------------------------------------------------------- 180 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLT------------------------------------------------------------- 180 (304)
T ss_dssp TSEEEEEETTCSSCSEEEE-------------------------------------------------------------
T ss_pred CCeEEEEECCCCCccceec-------------------------------------------------------------
Confidence 9999999987644322211
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC-CCCc
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG-EEEQ 367 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 367 (706)
.++...+..+.+.+ +++.
T Consensus 181 -------------------------------------------------------------~~~~~~v~~~~~~~~~~~~ 199 (304)
T 2ynn_A 181 -------------------------------------------------------------TGQERGVNYVDYYPLPDKP 199 (304)
T ss_dssp -------------------------------------------------------------CCCTTCEEEEEECCSTTCC
T ss_pred -------------------------------------------------------------cCCcCcEEEEEEEEcCCCC
Confidence 01223344455544 3667
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
++++++.|+.|++||+.++++...+.+|...+.++. +.|++.. |++++.||.|++||..+++.+..+..|...+.++
T Consensus 200 ~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV--FHPTLPI-IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--ECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred EEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE--ECCCCCE-EEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 999999999999999999999999999999999998 8888876 9999999999999999999999999999999999
Q ss_pred EEecCCCeE-EEEecCCCeEEEEEecC
Q 005254 448 AFSKKLQNF-LVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 448 ~~~~~~~~~-l~~~~~d~~i~i~~~~~ 473 (706)
+++|++... +++++.| .+.+|++..
T Consensus 277 ~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EECCCCCceEEEEecCC-ceEEEEecc
Confidence 999988654 6666554 577777653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=336.89 Aligned_cols=289 Identities=21% Similarity=0.355 Sum_probs=265.8
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.....+.+|...|.+++|.+ +++++++++.|+.|++||..++.....+..|...+.++. +.|+++. +++++.|+.+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~-l~s~~~d~~v 121 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDNIC 121 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEE--ECTTSSE-EEEEETTCEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEE--ECCCCCE-EEEEeCCCeE
Confidence 34567789999999999987 788999999999999999999999999999999999998 8888887 9999999999
Q ss_pred EEEeCCCc----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 424 RLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 424 ~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
++|++.++ .....+.+|.+.|.++.|++++. +++++.|+.|++||+..+. ....+.+|...|.+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~----------~~~~~~~h~~~v~~ 189 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQ----------QTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTE----------EEEEECCCSSCEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCc----------EEEEEcCCCCceEE
Confidence 99999875 45667889999999999999864 8999999999999997653 55667789999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-- 577 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 577 (706)
++|+|+++++++|+.||.|++||+.++.....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 190 ~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 269 (340)
T 1got_B 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269 (340)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888777532
Q ss_pred ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
...|++++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|+
T Consensus 270 ~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=339.08 Aligned_cols=290 Identities=22% Similarity=0.343 Sum_probs=251.0
Q ss_pred eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
+....+.+|...|++++|+|++++||+|+.||.|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec--CCCE
Q 005254 131 VDGG------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS--DGST 202 (706)
Q Consensus 131 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 202 (706)
+... .....+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+.+|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCE--EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8643 234566789999999999998876 99999999999999999999999988988888888876 3456
Q ss_pred EEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECC
Q 005254 203 LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNAD 282 (706)
Q Consensus 203 l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 282 (706)
|++++.||.|++||++
T Consensus 213 l~sgs~Dg~v~~wd~~---------------------------------------------------------------- 228 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMR---------------------------------------------------------------- 228 (354)
T ss_dssp EEEEETTSCEEEEETT----------------------------------------------------------------
T ss_pred EEEEeCCCeEEEEECC----------------------------------------------------------------
Confidence 6666666666666553
Q ss_pred CCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEe
Q 005254 283 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL 362 (706)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 362 (706)
T Consensus 229 -------------------------------------------------------------------------------- 228 (354)
T 2pbi_B 229 -------------------------------------------------------------------------------- 228 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCc
Q 005254 363 GEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG 442 (706)
Q Consensus 363 ~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 442 (706)
+++.+..+..|..
T Consensus 229 -------------------------------------------------------------------~~~~~~~~~~h~~ 241 (354)
T 2pbi_B 229 -------------------------------------------------------------------SGQCVQAFETHES 241 (354)
T ss_dssp -------------------------------------------------------------------TCCEEEEECCCSS
T ss_pred -------------------------------------------------------------------CCcEEEEecCCCC
Confidence 3333334456778
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
.|.+++|+|++. ++++++.|++|++||+.... ....... +...+.+++|+|++++|++|+.|+.|++
T Consensus 242 ~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~----------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 242 DVNSVRYYPSGD-AFASGSDDATCRLYDLRADR----------EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTTE----------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 899999999987 89999999999999997642 2222222 2346899999999999999999999999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
||+.+++.+..+.+|...|++++|+|++++|++++.|++|++|+
T Consensus 311 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=331.37 Aligned_cols=297 Identities=24% Similarity=0.383 Sum_probs=251.5
Q ss_pred eEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCC-----CeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 51 SIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLST-----LKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
.+...|.+|.+.|++++|+|++ ++|++|+.|++|++||+.+ +.++..+.+|...|.+++|+|++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3557899999999999999965 8999999999999999864 456788999999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
+|++||+.+++.+..+.+|...|.+++|+|++.. +++|+.|+.|++||++ ++.+..+.+|...|.+++|+|.+..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~-- 162 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA-- 162 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCE--EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC-----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCE--EEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC--
Confidence 9999999999999999999999999999998776 9999999999999985 5666777788888888887765320
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (319)
T 3frx_A 163 -------------------------------------------------------------------------------- 162 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 163 -------------------------------------------------------------------------------- 162 (319)
T 3frx_A 163 -------------------------------------------------------------------------------- 162 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
.+++. .+++++.|+.|++||+.+.+....+.+|...|
T Consensus 163 ------------------------------------------~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v 199 (319)
T 3frx_A 163 ------------------------------------------DDDSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199 (319)
T ss_dssp ---------------------------------------------CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred ------------------------------------------CCCcc-EEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence 00111 26777777788888887777777788899999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.+++|+|+++ +|++++.||.|++||+.... ....+. +...|.+++|+|++.++++++.+ .+++|++.
T Consensus 200 ~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 200 NTLTASPDGT-LIASAGKDGEIMLWNLAAKK----------AMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp EEEEECTTSS-EEEEEETTCEEEEEETTTTE----------EEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCc----------EEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 9999999988 89999999999999997652 233333 45689999999999999988765 59999999
Q ss_pred CccEEEEEee--------cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 525 DLVSVVTFRG--------HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 525 ~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
.......+.. |...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 8877776653 4567999999999999999999999999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=327.85 Aligned_cols=293 Identities=24% Similarity=0.370 Sum_probs=263.4
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.+|...|.+++|+| ++.++++++.||.|++||+.++.....+..|..++.++. +.++++. +++|+.|+.|+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~s~s~d~~i~ 80 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK--FIARKNW-IIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EEGGGTE-EEEEETTSEEE
T ss_pred eEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEE--EeCCCCE-EEEECCCCEEE
Confidence 3456778999999999998 778999999999999999999999999999999999998 8888887 99999999999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+||+.+++.+..+.+|...|.+++|+|+++ ++++++.|++|++||+.... .....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~---------~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTT---------EEEEEECCCCSCEEEEEECT
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCc---------chhhhhcccCCcEEEEEECC
Confidence 999999999999999999999999999987 89999999999999997542 14456778999999999999
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEcc--CCCEEEEecCCCcEEEEEcCCCceEEEEeecccC
Q 005254 505 -NDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSP--VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 580 (706)
Q Consensus 505 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 580 (706)
++.+|++|+.|+.|++||+.+......+. +|...+..+.|+| ++.+|++++.|++|++||+.+++++..+.+|...
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~ 230 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCC
Confidence 67899999999999999998877665554 4668899999987 7789999999999999999999999999999999
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCch
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTE--MFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~ 652 (706)
|.+++|+|++++|++++.||.|++||+.+++++..+..|...+.+++|+|++. ++++|+.|| +.+|++...
T Consensus 231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999885 577776555 788887653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=350.09 Aligned_cols=316 Identities=22% Similarity=0.383 Sum_probs=269.3
Q ss_pred CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEE
Q 005254 124 RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203 (706)
Q Consensus 124 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 203 (706)
..+..|+..+..+...+.+|.+.|.+++|+|+++. |++|+.||+|++||+.+++....+..|...|.+++|+|+|++|
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~--l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNW--IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSC--EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCE--EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEE
Confidence 44566888888889999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
++++.|+.+++|++.+..... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~~----------------~------------------------------------------ 145 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRD----------------G------------------------------------------ 145 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCC----------------C------------------------------------------
T ss_pred EEeeCCCcEEEEECCCCcccc----------------C------------------------------------------
Confidence 999999999999986432100 0
Q ss_pred CeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC
Q 005254 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (706)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 363 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (380)
T 3iz6_a 146 -------------------------------------------------------------------------------- 145 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE-----e
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-----T 438 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~ 438 (706)
.......+.+|.+.+.++. +.|++...+++|+.|++|++||+.+++.+..+ .
T Consensus 146 ---------------------~~~~~~~~~gh~~~v~~~~--~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 146 ---------------------NMPVSRVLTGHKGYASSCQ--YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp ---------------------SSTTCCBCCCCSSCCCCCB--CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred ---------------------CccceeeccCCCcceEEEE--EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 0000113445666666655 66665555899999999999999999888776 5
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcE
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 518 (706)
+|...|.++++++....++++++.|+.|++||++... .....+.+|...|.+++|+|++++|++++.||+|
T Consensus 203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~---------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i 273 (380)
T 3iz6_a 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS---------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTC 273 (380)
T ss_dssp SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC---------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCE
T ss_pred CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC---------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeE
Confidence 7889999999988555599999999999999987432 1456678899999999999999999999999999
Q ss_pred EEEeCCCccEEEEEeecCC-------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEE----eecccCEEEEEEE
Q 005254 519 CVWRLPDLVSVVTFRGHKR-------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTF----EGHTSSVLRASFL 587 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~s 587 (706)
++||+.+++.+..+..+.. .|++++|+|++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s 353 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS 353 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC
T ss_pred EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC
Confidence 9999999998888765432 4899999999999999999999999999999988877 6799999999999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCe
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
|+|++|++|+.||.|++|++...+
T Consensus 354 ~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 354 SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999987654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=343.51 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=204.3
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE----EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG----VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
+|...|.+++ +.|++. +++++.||.|++||+.+++... ...+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 92 ~~~~~V~~~~--~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iw 166 (357)
T 4g56_B 92 QTEAGVTDVA--WVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVW 166 (357)
T ss_dssp ECSSCEEEEE--EETTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred CCCCCEEEEE--EcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence 4556677776 667653 5567889999999988876443 3447899999999999987 89999999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEcc
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSP 546 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~ 546 (706)
|+.... ....+..|...|.+++|+|++. ++++++.||.|++||+++++....+. .|...+.+++|+|
T Consensus 167 d~~~~~----------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp 236 (357)
T 4g56_B 167 DLSQKA----------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP 236 (357)
T ss_dssp ETTTTE----------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred ECCCCc----------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence 988653 5667788999999999999875 78999999999999999987766544 4677899999999
Q ss_pred C-CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE
Q 005254 547 V-DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624 (706)
Q Consensus 547 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 624 (706)
+ +.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++ ++|++++.|++|+|||+.+++++..+ +|.+.|+
T Consensus 237 ~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~ 315 (357)
T 4g56_B 237 EKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT 315 (357)
T ss_dssp TSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred cccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence 7 5689999999999999999999999999999999999999987 57999999999999999999987665 8999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 625 ALAVGK-KTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 625 ~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
+++|+| |+++|++++.||.|++|++.+.......
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~ 350 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC--------
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccc
Confidence 999998 7999999999999999999876554433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=348.59 Aligned_cols=309 Identities=26% Similarity=0.397 Sum_probs=263.6
Q ss_pred CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
+..+..|+..+....+.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence 34566788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEECCCCe-------EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-----ec
Q 005254 119 TAGADRKVLVWDVDGGF-------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DK 186 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~ 186 (706)
+|+.|+.+++||+.+.. ....+.+|.+.|.+++|+|++. ..+++|+.|++|++||+.+++.+..+ .+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence 99999999999997532 3455778999999999999743 24899999999999999999988877 67
Q ss_pred ccceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 187 HFSRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 187 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|...|.+++|++ ++.++++++.|+.|++||++...
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-------------------------------------------- 239 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-------------------------------------------- 239 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--------------------------------------------
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--------------------------------------------
Confidence 889999999977 78899999999999999975311
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEE
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (706)
T Consensus 240 -------------------------------------------------------------------------------- 239 (380)
T 3iz6_a 240 -------------------------------------------------------------------------------- 239 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 346 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
.....+.+|...|.++. ++|++.. +++++.|++|++
T Consensus 240 -----------------------------------------~~~~~~~~h~~~v~~v~--~~p~~~~-l~s~s~D~~i~l 275 (380)
T 3iz6_a 240 -----------------------------------------RAVRTYHGHEGDINSVK--FFPDGQR-FGTGSDDGTCRL 275 (380)
T ss_dssp -----------------------------------------CCCEEECCCSSCCCEEE--ECTTSSE-EEEECSSSCEEE
T ss_pred -----------------------------------------cceEEECCcCCCeEEEE--EecCCCe-EEEEcCCCeEEE
Confidence 01113455677777777 7787777 899999999999
Q ss_pred EeCCCceEEEEEeCCC-------cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE----eecC
Q 005254 426 WDSESRCCVGVGTGHM-------GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV----AAHG 494 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~ 494 (706)
||+.+++.+..+..+. ..+++++|+|+++ ++++|+.||.|++||+.... ....+ .+|.
T Consensus 276 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~----------~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAE----------MVLNLGTLQNSHE 344 (380)
T ss_dssp EETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCC----------EEEEECCSCSSCC
T ss_pred EECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCc----------eEEEEecccCCCC
Confidence 9999998888775443 3489999999988 89999999999999987543 22222 5688
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
..|++++|+|+|++|++|+.||.|++|++...+
T Consensus 345 ~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999999999987653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=335.59 Aligned_cols=301 Identities=19% Similarity=0.189 Sum_probs=244.4
Q ss_pred EEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-----------CeEEEEeeccCCCeEEEEE
Q 005254 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-----------LKCLRSWKGHDGPAIGMAC 110 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~ 110 (706)
.+.|++..... ..|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 35566654332 35778899999999999999887 66777776321 1111122336688999999
Q ss_pred CCCCCEEEEecCCCcEEEEECCCCeEEEE----eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 111 HPSGGLLATAGADRKVLVWDVDGGFCTHY----FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 111 s~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
+|++ +|++++.||+|++||+++++.+.. ..+|...|.+++|+|+++. |++|+.|++|++||+++++.+..+.+
T Consensus 91 s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~--l~sgs~d~~i~iwd~~~~~~~~~~~~ 167 (344)
T 4gqb_B 91 VGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ--AVSGSKDICIKVWDLAQQVVLSSYRA 167 (344)
T ss_dssp ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE--EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred eCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE--EEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9985 688999999999999998875433 4589999999999999886 99999999999999999999999999
Q ss_pred ccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 187 HFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 187 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|.+.|.+++|++++. +|++++.|+.|++||+++++....+..
T Consensus 168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------- 210 (344)
T 4gqb_B 168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------------------------- 210 (344)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------
T ss_pred cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-------------------------------------
Confidence 999999999999885 788999999999999987765443211
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEE
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (706)
T Consensus 211 -------------------------------------------------------------------------------- 210 (344)
T 4gqb_B 211 -------------------------------------------------------------------------------- 210 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 346 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
..+...+.+++|.|.++.++++++.++.|++||+.+++.+..+.+|...|.++. ++|++..+|++|+.|++|++
T Consensus 211 ----~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~--fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 211 ----SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV--FSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp -------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE--ECSSSSCCEEEEETTSCEEE
T ss_pred ----ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE--EccCCCeEEEEEeCCCeEEE
Confidence 012234567788888889999999999999999999999999999999999998 88988777999999999999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
||..+++.+ .+.+|.+.|++++|+|+++.+|++++.|++|++|++...
T Consensus 285 wd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 285 LDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999998765 468899999999999999878899999999999999764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-44 Score=354.20 Aligned_cols=346 Identities=15% Similarity=0.175 Sum_probs=286.1
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
.+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|+|++++|++++.|+.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 4558999999999999999999999999998887777766 555666889999999999999999999999999998888
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
+|...|.+++|+|+++. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 137 ~h~~~v~~~~~~~~~~~--l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEA--LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSE--EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCE--EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 99999999999998775 9999999999999999999999999999999999999999999999999999999987654
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
....+...
T Consensus 215 ~~~~~~~~------------------------------------------------------------------------ 222 (420)
T 3vl1_A 215 TIHTFNRK------------------------------------------------------------------------ 222 (420)
T ss_dssp EEEEECBT------------------------------------------------------------------------
T ss_pred eeEEeecC------------------------------------------------------------------------
Confidence 33221100
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
T Consensus 223 -------------------------------------------------------------------------------- 222 (420)
T 3vl1_A 223 -------------------------------------------------------------------------------- 222 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEec
Q 005254 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 382 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 461 (706)
..+...+.++++.+.+...
T Consensus 223 --------------------------------------------------------~~~~~~v~~~~~~~~~~~~----- 241 (420)
T 3vl1_A 223 --------------------------------------------------------ENPHDGVNSIALFVGTDRQ----- 241 (420)
T ss_dssp --------------------------------------------------------TBTTCCEEEEEEEECCCSS-----
T ss_pred --------------------------------------------------------CCCCCCccEEEEecCCcce-----
Confidence 0112223333333332210
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEE
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIW 540 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~ 540 (706)
....+...+.+++|+|++++|++++.||.|++||+.+++....+.. |...|.
T Consensus 242 ---------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 242 ---------------------------LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294 (420)
T ss_dssp ---------------------------CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred ---------------------------eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence 0011334577889999999999999999999999999988777754 788999
Q ss_pred EEEEccCCC-EEEEecCCCcEEEEEcCCCce-EEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------
Q 005254 541 SVEFSPVDQ-VVITASGDKTIKIWSISDGSC-LKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------ 611 (706)
Q Consensus 541 ~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------ 611 (706)
+++|+|+++ +|++++.||.|++||+.+++. +..+.. |...+.++ +.+++++|++++.||.|++||+.+.+
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 999999999 999999999999999998754 777777 56677777 55688899999999999999987631
Q ss_pred ---EEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCcEEEEECCc
Q 005254 612 ---CIATYDKHEDKIWALAVGKKTE---MFATGGSDALVNLWHDST 651 (706)
Q Consensus 612 ---~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~ 651 (706)
....+..|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 2234557889999999999999 788888999999999875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=332.87 Aligned_cols=327 Identities=24% Similarity=0.366 Sum_probs=242.4
Q ss_pred CeEEEeecCCCc-cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE---EeeccCCCeEEEEECCCCCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR---SWKGHDGPAIGMACHPSGGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 125 (706)
.+.+..+.+|.. .|.+++|+|+|++||+|+.|+.|+|||++++.... ...+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999988 99999999999999999999999999999886432 23679999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEeecccceEEEEEEecCC
Q 005254 126 VLVWDVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 126 i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~ 200 (706)
|++|++..+ +.+..+.+|...|.+++|+|+++. |++++.|+.|++||+.++. .+..+.+|...|.+++|+|++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL--LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE--EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999876 457788999999999999998876 9999999999999998763 456778899999999999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
++|++++.|+.|++|+..+.+..
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~--------------------------------------------------------- 185 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWV--------------------------------------------------------- 185 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEE---------------------------------------------------------
T ss_pred CEEEEEeCCCcEEEEEecCCCEE---------------------------------------------------------
Confidence 99999999999999986543211
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
....+.+|...|.+++
T Consensus 186 ----------------------------------------------------------------~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 186 ----------------------------------------------------------------CCATLEGHESTVWSLA 201 (345)
T ss_dssp ----------------------------------------------------------------EEEEECCCSSCEEEEE
T ss_pred ----------------------------------------------------------------EEEEecCCCCceEEEE
Confidence 0012233445555666
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG- 439 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 439 (706)
|.| ++++|++++.|+.|++|+..... ....+. ....+ ...+++..+.+
T Consensus 202 ~sp-~g~~l~s~s~D~~v~iW~~~~~~-------~~~~~~---------------~~~~~--------~~~~~~~~~~~~ 250 (345)
T 3fm0_A 202 FDP-SGQRLASCSDDRTVRIWRQYLPG-------NEQGVA---------------CSGSD--------PSWKCICTLSGF 250 (345)
T ss_dssp ECT-TSSEEEEEETTSCEEEEEEECTT-------CTTCCC---------------CC-----------CEEEEEEEECSS
T ss_pred ECC-CCCEEEEEeCCCeEEEeccccCC-------CCccce---------------eeccC--------CccceeEEecCC
Confidence 654 45566666666666666532111 000000 00000 01123333443
Q ss_pred CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcE
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTA 518 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 518 (706)
|...|.+++|+|++. .+++++.|+.|++|+............. .......+|...|++++|+|++ .+|++|+.||.|
T Consensus 251 h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFS-LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV 328 (345)
T ss_dssp CSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEE-EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred CCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEE-EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE
Confidence 788999999999987 7999999999999998765322211100 1112235788999999999988 599999999999
Q ss_pred EEEeCCCccEEEEE
Q 005254 519 CVWRLPDLVSVVTF 532 (706)
Q Consensus 519 ~i~d~~~~~~~~~~ 532 (706)
++|++.+.+.....
T Consensus 329 ~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 329 AFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEECC-------
T ss_pred EEEEecCCCCcccc
Confidence 99999888765543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=326.12 Aligned_cols=293 Identities=24% Similarity=0.374 Sum_probs=264.2
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-----ceeeEeeeCCcceEEEeeeeeecCCCEEEEEe
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-----MSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
+.....+.+|.+.|.+++|.+.+++++++++.|+.|++|++.. +.....+.+|...+.++. +.+++.. ++++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~s~dg~~-l~s~ 83 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--LTADGAY-ALSA 83 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--ECTTSSE-EEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--ECCCCCE-EEEE
Confidence 4455678899999999999998889999999999999999864 345667899999999998 8888887 9999
Q ss_pred eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcce
Q 005254 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 497 (706)
+.|++|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++.. ....+.+|...+
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~-----------~~~~~~~h~~~v 151 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ-----------CLATLLGHNDWV 151 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC-----------EEEEECCCSSCE
T ss_pred eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-----------eEEEEeccCCcE
Confidence 9999999999999999999999999999999999987 8999999999999998643 566778899999
Q ss_pred EEEEEcCC------CCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 498 NSLAVAPN------DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 498 ~~~~~s~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
.++.++|. +.++++++.|+.|++||+.+.+....+.+|...|.+++|+|++++|++++.||.|++||+.+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999985 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec--------cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD--------KHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+++|+|||++|++++.||.
T Consensus 232 ~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 232 YTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp EEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred EEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence 88874 56899999999999999887655 9999999888777664 34567999999999999999999999
Q ss_pred EEEEECCch
Q 005254 644 VNLWHDSTA 652 (706)
Q Consensus 644 i~vw~~~~~ 652 (706)
|++|++.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999998764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=325.53 Aligned_cols=297 Identities=29% Similarity=0.490 Sum_probs=261.0
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
......+.+|...|++++|+|++++|++++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
|+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSE--EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCE--EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
|.|++||+++++....+..
T Consensus 171 ~~i~~wd~~~~~~~~~~~~------------------------------------------------------------- 189 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLID------------------------------------------------------------- 189 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-------------------------------------------------------------
T ss_pred CcEEEEECCCCceeeEEec-------------------------------------------------------------
Confidence 9999999987654332210
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
.+...+..++|.| +++++
T Consensus 190 -------------------------------------------------------------~~~~~~~~~~~~~-~~~~l 207 (312)
T 4ery_A 190 -------------------------------------------------------------DDNPPVSFVKFSP-NGKYI 207 (312)
T ss_dssp -------------------------------------------------------------SSCCCEEEEEECT-TSSEE
T ss_pred -------------------------------------------------------------cCCCceEEEEECC-CCCEE
Confidence 1122344555554 66788
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
++++.++.|++||+.+++....+.+|.....++...+.+.+..++++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 208 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 287 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 287 (312)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEee
Confidence 88999999999999999988888888776555443355555555999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEec--CCCeEEEEEec
Q 005254 450 SKKLQNFLVSGS--SDHTIKVWSFD 472 (706)
Q Consensus 450 ~~~~~~~l~~~~--~d~~i~i~~~~ 472 (706)
+|+++ ++++++ .|+.|++|+.+
T Consensus 288 ~p~~~-~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTEN-IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSS-EEEEEECTTTCCEEEEECC
T ss_pred cCcCC-ceEEEEccCCccEEEecCC
Confidence 99987 777775 69999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=333.72 Aligned_cols=244 Identities=19% Similarity=0.207 Sum_probs=209.2
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE----EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV----GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
+...|.++. +.++ +. +++|+.||.|++||+.+++.+.. ..+|...|++++|+|+++ +|++++.|++|++||
T Consensus 81 ~~~~v~~~~--~s~d-~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 81 TEAGVADLT--WVGE-RG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWD 155 (344)
T ss_dssp ESSCEEEEE--EETT-TE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCCCEEEEE--EeCC-Ce-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEE
Confidence 344577776 6666 44 78999999999999998865443 458999999999999988 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC-EEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPV 547 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~ 547 (706)
+..+. ....+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+. .|...+.+++|+|+
T Consensus 156 ~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 156 LAQQV----------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp TTTTE----------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred CCCCc----------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 98653 6677888999999999999884 78999999999999999998888764 35667999999995
Q ss_pred -CCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC-CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEE
Q 005254 548 -DQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG-AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625 (706)
Q Consensus 548 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 625 (706)
+++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|++||+.+++++ .+.+|.+.|++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 5788999999999999999999999999999999999999998 57999999999999999998865 56899999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCchhH
Q 005254 626 LAVGKKTE-MFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 626 ~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~ 654 (706)
++|+|+++ +|++++.||+|++|++.++..
T Consensus 305 v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999987 567899999999999987654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=331.72 Aligned_cols=253 Identities=21% Similarity=0.413 Sum_probs=213.2
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc--eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+|...|.+++ ++|+++. |++++.|+.+++|+...+ +.+..+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 58 ~~h~~~v~~~~--~sp~g~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 58 EGHQRTVRKVA--WSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWE 133 (345)
T ss_dssp SSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cccCCcEEEEE--ECCCCCE-EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEE
Confidence 45777888887 7888877 999999999999998776 45677889999999999999987 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~s~~~ 548 (706)
+.... .......+..|...|.+++|+|++++|++++.|+.|++||..+++ ....+.+|...|.+++|+|++
T Consensus 134 ~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 134 VDEED-------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp ECTTS-------CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCC-------CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC
Confidence 97642 122455677899999999999999999999999999999998775 456788999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCC---------------ceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe-
Q 005254 549 QVVITASGDKTIKIWSISDG---------------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE- 611 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 611 (706)
++|++++.|++|++||.... +++..+.+ |...|.+++|+|++..|++++.|+.|++|+...+.
T Consensus 207 ~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 286 (345)
T 3fm0_A 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD 286 (345)
T ss_dssp SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC
T ss_pred CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC
Confidence 99999999999999996322 33445555 88899999999999999999999999999987542
Q ss_pred --------EEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchhHHH
Q 005254 612 --------CIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 612 --------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
......+|...|++++|+|++. +|++++.||.|++|++.+.+...
T Consensus 287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 1223458999999999999984 99999999999999998877644
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=330.05 Aligned_cols=314 Identities=19% Similarity=0.325 Sum_probs=260.5
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE---EEee
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL---RSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~ 99 (706)
+++|+|||++++++... .+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++.. ..+.
T Consensus 14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~ 92 (337)
T 1gxr_A 14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92 (337)
T ss_dssp EEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred EEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc
Confidence 69999999999988765 566666555544445557999999999999999999998 999999999877533 3333
Q ss_pred --ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 100 --GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 100 --~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+|+++. +++++.||.|++||+
T Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV--CFSCCSDGNIAVWDL 170 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE--EEEEETTSCEEEEET
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE--EEEEeCCCcEEEEeC
Confidence 789999999999999999999999999999999887 66778889999999999998776 999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
++++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.....
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----------------------------- 221 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------------------------- 221 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------------------------
Confidence 999999999999999999999999999999999999999997643211100
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
.+...+.+++|+|+++ ++++++.++.|++|++... .......|..
T Consensus 222 -----------------------~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~ 266 (337)
T 1gxr_A 222 -----------------------DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP-----------DKYQLHLHES 266 (337)
T ss_dssp -----------------------ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS-----------CEEEECCCSS
T ss_pred -----------------------cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCC-----------CeEEEcCCcc
Confidence 0123345556666655 5666666666777766543 2234456778
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
.+.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 8999999999999999999999999999999887544 48899999999999999999999999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=328.43 Aligned_cols=289 Identities=19% Similarity=0.311 Sum_probs=263.5
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
....+.+|...|.+++|.| ++.++++++.|+.|++||..+++....+..|...+.++. ++|++.. +++++.|+.++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~--~sp~g~~-lasg~~d~~i~ 131 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA--YAPSGCA-IACGGLDNKCS 131 (354)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEE--ECTTSSE-EEEESTTSEEE
T ss_pred EEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEE--ECCCCCE-EEEeeCCCCEE
Confidence 4466789999999999987 678999999999999999999999889999999999988 8898887 99999999999
Q ss_pred EEeCCCc------eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 425 LWDSESR------CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 425 i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+|++... .....+..|...|.+++|+|++. .+++++.|++|++||+..+. ....+.+|...|.
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~----------~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQ----------LLQSFHGHGADVL 200 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCe----------EEEEEcCCCCCeE
Confidence 9998643 34456678999999999999987 89999999999999998653 5667788999999
Q ss_pred EEEEcC--CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 499 SLAVAP--NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 499 ~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++++| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++.+..+..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 999987 578999999999999999999999999999999999999999999999999999999999999888777764
Q ss_pred c--ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 577 H--TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 577 ~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+ ...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.||.|++|+
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3 34789999999999999999999999999999999999999999999999999999999999999999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=331.25 Aligned_cols=321 Identities=18% Similarity=0.254 Sum_probs=271.1
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE-
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT- 137 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~- 137 (706)
|..+|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999988877777777666655555567999999999999999999999 999999999876532
Q ss_pred --EEee--CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 138 --HYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 138 --~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
..+. +|...|.+++|+|+++. +++++.||.|++||+.+++ ....+..|...+.+++|+|+++++++++.||.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCT--LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSE--EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeecccccCCCCcEEEEEEcCCCCE--EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3333 79999999999998876 9999999999999998877 55667778888888888888888888888887
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||++++
T Consensus 165 v~~~d~~~~----------------------------------------------------------------------- 173 (337)
T 1gxr_A 165 IAVWDLHNQ----------------------------------------------------------------------- 173 (337)
T ss_dssp EEEEETTTT-----------------------------------------------------------------------
T ss_pred EEEEeCCCC-----------------------------------------------------------------------
Confidence 777776432
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 174 -------------------------------------------------------------------------------- 173 (337)
T 1gxr_A 174 -------------------------------------------------------------------------------- 173 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
+.+..+..|...+.+++|+|
T Consensus 174 ------------------------------------------------------------~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 174 ------------------------------------------------------------TLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp ------------------------------------------------------------EEEEEECCCSSCEEEEEECT
T ss_pred ------------------------------------------------------------ceeeeeecccCceEEEEECC
Confidence 11222334667888899999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
+++ ++++++.|+.|++||+... .......+...+.+++|+|+++++++++.++.|++||+.+++. ..
T Consensus 194 ~~~-~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~ 260 (337)
T 1gxr_A 194 DGT-KLWTGGLDNTVRSWDLREG-----------RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQ 260 (337)
T ss_dssp TSS-EEEEEETTSEEEEEETTTT-----------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EE
T ss_pred CCC-EEEEEecCCcEEEEECCCC-----------ceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EE
Confidence 887 8999999999999999865 2223345778899999999999999999999999999998765 46
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|++
T Consensus 261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 7789999999999999999999999999999999999888554 48899999999999999999999999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=327.11 Aligned_cols=301 Identities=18% Similarity=0.347 Sum_probs=246.3
Q ss_pred eEEEeecCCCccEEEEEE-----cc-CCCEEEEEeccCeEEEEECCC-------CeEEEEeeccCCCeEEEEECCCCCEE
Q 005254 51 SIKSTIEGGSDTITALAL-----SP-DDKLLFSSGHSREIRVWDLST-------LKCLRSWKGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 51 ~~~~~l~~~~~~i~~l~~-----s~-~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l 117 (706)
+....+.+|...|++++| ++ ++++||+|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456789999999999999 77 999999999999999999974 35677889999999999999999999
Q ss_pred EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee---cccceEEEE
Q 005254 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD---KHFSRVTSM 194 (706)
Q Consensus 118 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~ 194 (706)
++++.|++|++||+.+++.+..+.+|...|.+++|+|+++. +++++.|+.|++||+... ...... .|...|.++
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~--l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ--ILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTE--EEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCE--EEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeee
Confidence 99999999999999999999999999999999999999876 999999999999998743 333332 577778888
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
+|+|++... .
T Consensus 169 ~~~~~~~~~------~---------------------------------------------------------------- 178 (343)
T 2xzm_R 169 RYSPIMKSA------N---------------------------------------------------------------- 178 (343)
T ss_dssp EECCCCCSC------S----------------------------------------------------------------
T ss_pred eeccccccc------c----------------------------------------------------------------
Confidence 887764200 0
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
T Consensus 179 -------------------------------------------------------------------------------- 178 (343)
T 2xzm_R 179 -------------------------------------------------------------------------------- 178 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
. ..+.+.. +++++.|+.|++|| .+.+..
T Consensus 179 ------------------------------------------------~--~~~~~~~-l~s~~~d~~i~iwd-~~~~~~ 206 (343)
T 2xzm_R 179 ------------------------------------------------K--VQPFAPY-FASVGWDGRLKVWN-TNFQIR 206 (343)
T ss_dssp ------------------------------------------------C--CCSSCCE-EEEEETTSEEEEEE-TTTEEE
T ss_pred ------------------------------------------------c--cCCCCCE-EEEEcCCCEEEEEc-CCCcee
Confidence 0 1122223 77888888888888 445666
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+..|...|.+++|+|+++ +|++++.|+.|++||+..... ... ...+...|.+++|+|++.+++++ .
T Consensus 207 ~~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~---------~~~-~~~~~~~v~~v~~sp~~~~la~~-~ 274 (343)
T 2xzm_R 207 YTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTY---------PQR-EFDAGSTINQIAFNPKLQWVAVG-T 274 (343)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSS---------CSE-EEECSSCEEEEEECSSSCEEEEE-E
T ss_pred EEEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcc---------cce-eecCCCcEEEEEECCCCCEEEEE-C
Confidence 67788999999999999988 899999999999999854321 111 22345679999999999888765 5
Q ss_pred CCcEEEEeCCCccEEE--EEe-----------ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 515 DRTACVWRLPDLVSVV--TFR-----------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 515 dg~i~i~d~~~~~~~~--~~~-----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|+++++
T Consensus 275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7789999998765433 333 67888999999999999999999999999998654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-44 Score=355.56 Aligned_cols=337 Identities=14% Similarity=0.178 Sum_probs=279.8
Q ss_pred CCeEEEEECCCCC-EEEEe----------cCCCcEEEEECCCCe---EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC
Q 005254 103 GPAIGMACHPSGG-LLATA----------GADRKVLVWDVDGGF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168 (706)
Q Consensus 103 ~~v~~~~~s~~~~-~l~~~----------~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 168 (706)
..|.+++|+|+++ +|+++ +.|+.|++||+.+++ .+..+ .|...|.+++|+|+++. |++++.||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~--l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI--IAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC--EEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe--EEEEccCC
Confidence 4678899999987 99999 889999999999875 33333 58999999999999887 99999999
Q ss_pred eEEEEECCC----CeeEEEeecccceEEEEEEecC-CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 169 TVRVWDLLA----KKCVATLDKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 169 ~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+.+.......
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------------- 154 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT--------------- 154 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC---------------
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc---------------
Confidence 999999987 4578888999999999999998 89999999999999999876541100000
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (416)
T 2pm9_A 155 -------------------------------------------------------------------------------- 154 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
.........|...+.++.
T Consensus 155 --------------------------------------------------------------~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 155 --------------------------------------------------------------PLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp --------------------------------------------------------------CBCCCCSCCSSCCCCEEE
T ss_pred --------------------------------------------------------------ccccccccCCCCCeeEEE
Confidence 000001234555666666
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC------CcCeEEEEEecCCCeEEEEecCCC---eEEEEEecCC
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGSSDH---TIKVWSFDGL 474 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~ 474 (706)
+.+++..++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||++..
T Consensus 173 --~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 173 --WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp --ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred --eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 77775555999999999999999999988888776 789999999999877999999998 9999999864
Q ss_pred CCCCCcccccceeEEEe-ecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC-CEE
Q 005254 475 SDDAEQPMNLKAKAVVA-AHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-QVV 551 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 551 (706)
.. ....+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|
T Consensus 251 ~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 251 NT---------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TS---------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred CC---------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence 21 233344 6889999999999 99999999999999999999999999999999999999999999 899
Q ss_pred EEecCCCcEEEEEcCCCceEEEEe-----------------------------------ecccCEEEEEEEeCCCEEEEE
Q 005254 552 ITASGDKTIKIWSISDGSCLKTFE-----------------------------------GHTSSVLRASFLTRGAQIVSC 596 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~i~~~~~s~~~~~l~~~ 596 (706)
++++.|+.|++||+.++....... .|..++.+++|+|+|++|+++
T Consensus 322 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~ 401 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQIT 401 (416)
T ss_dssp EECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBC
T ss_pred EEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEe
Confidence 999999999999998765322211 156677899999999999999
Q ss_pred eCCCCEEEEECCCC
Q 005254 597 GADGLVKLWTVRTG 610 (706)
Q Consensus 597 ~~dg~i~iwd~~~~ 610 (706)
+.||.|+||++.+.
T Consensus 402 ~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 402 PDGKGVSITNPKIS 415 (416)
T ss_dssp TTSSCBCCBCCCCC
T ss_pred CCCCeEEEEEeccC
Confidence 99999999999764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=328.35 Aligned_cols=290 Identities=29% Similarity=0.524 Sum_probs=247.0
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc------------------cEEEEEEccCCCEEEEEeccCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD------------------TITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~------------------~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
+++|||||++||+++++.+.+|++.+++.+..+.+|.. .|++++|+|+|++||+|+.|+.|+
T Consensus 69 ~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~ 148 (393)
T 1erj_A 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148 (393)
T ss_dssp EEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence 89999999999999988999999999998888876542 499999999999999999999999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEE
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSG 164 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 164 (706)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++....+. +...+.+++|+| ++.. +++|
T Consensus 149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~--l~~~ 225 (393)
T 1erj_A 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKY--IAAG 225 (393)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCE--EEEE
T ss_pred EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCE--EEEE
Confidence 99999999999999999999999999999999999999999999999999888776 677899999999 6555 9999
Q ss_pred ecCCeEEEEECCCCeeEEEe-------ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEe
Q 005254 165 SDDATVRVWDLLAKKCVATL-------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCA 237 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 237 (706)
+.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++........
T Consensus 226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~---------- 295 (393)
T 1erj_A 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK---------- 295 (393)
T ss_dssp ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------
T ss_pred cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc----------
Confidence 99999999999999887776 5788999999999999999999999999999986532111000
Q ss_pred eCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCC
Q 005254 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 317 (706)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T Consensus 296 -------------------------------------------------------------------------------- 295 (393)
T 1erj_A 296 -------------------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc
Q 005254 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397 (706)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 397 (706)
....+.+...+.+|..
T Consensus 296 ----------------------------------------------------------------~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 296 ----------------------------------------------------------------TPNSGTCEVTYIGHKD 311 (393)
T ss_dssp ---------------------------------------------------------------------CEEEEEECCSS
T ss_pred ----------------------------------------------------------------CCCCCcceEEEecccC
Confidence 0001112234567888
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC-----CCeEEEEecCCCeEEEEEec
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK-----LQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~ 472 (706)
.+.++. +.+++.. +++|+.|+.|++||..+++.+..+.+|...|.+++|++. ...+|++++.||+|++|++.
T Consensus 312 ~v~~~~--~~~~~~~-l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 312 FVLSVA--TTQNDEY-ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEE--ECGGGCE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cEEEEE--ECCCCCE-EEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 888887 7787777 999999999999999999999999999999999999873 13489999999999999986
Q ss_pred C
Q 005254 473 G 473 (706)
Q Consensus 473 ~ 473 (706)
.
T Consensus 389 ~ 389 (393)
T 1erj_A 389 K 389 (393)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=319.90 Aligned_cols=298 Identities=21% Similarity=0.334 Sum_probs=235.0
Q ss_pred cCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEe-ec-cCCCeEEEEECCCCCEEEEecCC
Q 005254 48 SNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSW-KG-HDGPAIGMACHPSGGLLATAGAD 123 (706)
Q Consensus 48 ~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~s~~~~~l~~~~~d 123 (706)
.+.+.+..+.+|..+|.+++|+|+ +||+|+.|+.|++||+.++ +.+..+ .+ |...|.+++|+|++++|++++.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 355678889999999999999988 9999999999999999875 455666 44 99999999999999999999999
Q ss_pred CcEEEEECCC-------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC----CeeEEEeecccceEE
Q 005254 124 RKVLVWDVDG-------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA----KKCVATLDKHFSRVT 192 (706)
Q Consensus 124 ~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~ 192 (706)
++|++||+.. .+.+..+.+|...|.+++|+|+++. |++++.|+.|++||+.. .+++..+.+|...|.
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~--las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY--LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE--EEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE--EEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 9999999853 4567788899999999999998876 99999999999999943 256778889999999
Q ss_pred EEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecC
Q 005254 193 SMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE 272 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (706)
+++|+|++.+|++++.|+.|++||..++.
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------------------------- 186 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------------------------- 186 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTE---------------------------------------------------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCC---------------------------------------------------
Confidence 99999999999999999999999864211
Q ss_pred CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEeccc
Q 005254 273 RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352 (706)
Q Consensus 273 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (330)
T 2hes_X 187 -------------------------------------------------------------------------------- 186 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC-CEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG-KILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~ 431 (706)
.++...+.+|...|.++. +.|++ ..++++++.|++|++||+..+
T Consensus 187 ---------------------------------~~~~~~~~~h~~~v~~~~--~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 187 ---------------------------------WECVAVLNGHEGTVWSSD--FDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ---------------------------------EEEEEEECCCSSCEEEEE--ECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ---------------------------------eeEEEEccCCCCcEEEEE--ecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 011224556777777776 66652 234899999999999998754
Q ss_pred --------eEEEEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCc-ceEEE
Q 005254 432 --------CCVGVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGK-DINSL 500 (706)
Q Consensus 432 --------~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~ 500 (706)
.....+.. |...|.+++|++++ ++++++.||.|++|+...+. .... .....|.. .|.++
T Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~--------~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE--------WKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp CTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE--------EEEEEEESCTTTTSCEEEE
T ss_pred CccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc--------eEEEeccccccccceEEEE
Confidence 34444544 88999999999764 69999999999999986431 0111 12245666 89999
Q ss_pred EEcC--CCCEEEEeeCCCcEEEEeCCC
Q 005254 501 AVAP--NDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 501 ~~s~--~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+|+| ++++|++|+.||.|++||+.+
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=321.40 Aligned_cols=294 Identities=20% Similarity=0.282 Sum_probs=251.8
Q ss_pred eeEEeeEecccCceeeEeeE-----eCCCCcEEEEEecCCcEEEEeCCCc-------eeeEeeeCCcceEEEeeeeeecC
Q 005254 342 ELILSKRLVGYNEEILDLKF-----LGEEEQYLAVATNIEQVQVYDLSSM-------SCSYVLAGHSEIVLCLDTCALSS 409 (706)
Q Consensus 342 ~~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~~~~ 409 (706)
.......+.+|...|.+++| .++++.+|++++.|+.|++||+... .....+.+|...|.++. +.++
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~~~~ 87 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--LSQE 87 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--ECSS
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--ECCC
Confidence 33455677899999999999 6668899999999999999998743 45667889999999998 8888
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
+.. +++++.|++|++||+.+++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+... ....
T Consensus 88 ~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~-----------~~~~ 154 (343)
T 2xzm_R 88 NCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE-----------CKFS 154 (343)
T ss_dssp TTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-----------EEEE
T ss_pred CCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-----------ceee
Confidence 877 99999999999999999999999999999999999999988 8999999999999998632 1111
Q ss_pred E---eecCcceEEEEEcCCC----------CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC
Q 005254 490 V---AAHGKDINSLAVAPND----------SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 490 ~---~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
. ..|...|.+++|+|++ .++++++.||.|++|| .+.+....+.+|...|.+++|+|++++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 1 2577889999999987 7999999999999999 456777788999999999999999999999999
Q ss_pred CCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--Eec-----------cCCCc
Q 005254 557 DKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYD-----------KHEDK 622 (706)
Q Consensus 557 dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~ 622 (706)
||.|++||+.+ ......+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+. +|...
T Consensus 234 dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ 311 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred CCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence 99999999944 44444443 56789999999999887755 57889999998876443 443 68889
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 623 IWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 623 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
|.+++|+|++++|++|+.||.|++|++.++.
T Consensus 312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 312 CTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999999999987653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=314.11 Aligned_cols=293 Identities=25% Similarity=0.449 Sum_probs=265.1
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
......+.+|...|.+++|.| +++++++++.++.+++|+..+++....+.+|...+.++. +.|+++. +++++.|+.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSNL-LVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEE--EcCCCCE-EEEECCCCE
Confidence 344567788999999999987 778999999999999999999999999999999999998 8888877 999999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
|++||+.+++.+..+..|...|.+++|+|++. ++++++.|+.|++||+.... ....+..|..+|.+++|
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK----------CLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC----------EEEEECCCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE----------EEEEecCCCCcEEEEEE
Confidence 99999999999999999999999999999987 89999999999999997653 55667788999999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
+|++++|++++.||.|++||+.+++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++++..+.+|....
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 9999999999999999999999998887765 466789999999999999999999999999999999999998887643
Q ss_pred EE--EEEE-eCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 005254 582 LR--ASFL-TRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG--SDALVNLWHDS 650 (706)
Q Consensus 582 ~~--~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~ 650 (706)
.. ..++ +++.+|++++.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 22 3344 6788999999999999999999999999999999999999999999999987 69999999975
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=339.31 Aligned_cols=342 Identities=14% Similarity=0.166 Sum_probs=283.5
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.+++|+|+|++|++++.+ .|++||..+++....+..| ..+....|+|++++||+++.||.|++||+.+++....+.+|
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 379999999999999866 8999999988877777766 55566688999999999999999999999999999998999
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV 181 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 181 (706)
...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++||+++++.+
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN--VLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE--EEEEETTSCEEEEETTTTEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE--EEEEcCCCcEEEeECCCCcee
Confidence 999999999999999999999999999999999999999999999999999998876 999999999999999999999
Q ss_pred EEeec---ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 182 ATLDK---HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 182 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
..+.. |...+.+++|.+++...+.
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~----------------------------------------------------- 243 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLH----------------------------------------------------- 243 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCG-----------------------------------------------------
T ss_pred EEeecCCCCCCCccEEEEecCCcceee-----------------------------------------------------
Confidence 88874 5567888777765432100
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccc
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPE 338 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 338 (706)
T Consensus 244 -------------------------------------------------------------------------------- 243 (420)
T 3vl1_A 244 -------------------------------------------------------------------------------- 243 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 339 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
..+...+.++. ++|+++. +++++
T Consensus 244 ------------------------------------------------------~~~~~~v~~~~--~s~~~~~-l~~~~ 266 (420)
T 3vl1_A 244 ------------------------------------------------------EISTSKKNNLE--FGTYGKY-VIAGH 266 (420)
T ss_dssp ------------------------------------------------------GGCCCCCCTTC--SSCTTEE-EEEEE
T ss_pred ------------------------------------------------------ecccCcccceE--EcCCCCE-EEEEc
Confidence 00111122222 5565555 88899
Q ss_pred CCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcc
Q 005254 419 KDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKD 496 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 496 (706)
.||.|++||+.+++.+..+. .|...+.+++|+|+++.++++++.||.|++||+..... ....+.. +...
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~ 337 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---------PVGEFLINEGTP 337 (420)
T ss_dssp TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------CSEEEEESTTSC
T ss_pred CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---------chhhhhccCCCC
Confidence 99999999998888776654 57889999999999887899999999999999986531 2334444 6777
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCc---------cEEEEEeecCCcEEEEEEccCCC---EEEEecCCCcEEEEE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDL---------VSVVTFRGHKRGIWSVEFSPVDQ---VVITASGDKTIKIWS 564 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~i~iwd 564 (706)
+.++.+ +++++|++++.||.|++|++... .....+..|...|.+++|+|+++ .+++++.+|.+.+|+
T Consensus 338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 888855 57889999999999999998763 22334567889999999999999 777888899999999
Q ss_pred cCC
Q 005254 565 ISD 567 (706)
Q Consensus 565 ~~~ 567 (706)
+++
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=331.30 Aligned_cols=325 Identities=29% Similarity=0.545 Sum_probs=262.7
Q ss_pred CCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..+....+.+|...+.. ++++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++ + ++++|+.||.|
T Consensus 107 ~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~s~~~dg~i 181 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--N--IIISGSTDRTL 181 (445)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--T--EEEEEETTSCE
T ss_pred CcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--C--EEEEEeCCCeE
Confidence 34456778899887533 3555689999999999999999999999999999999999999984 3 49999999999
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|++||+.+++..
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~--------------------------- 232 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL--------------------------- 232 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE---------------------------
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE---------------------------
Confidence 999999999999999999999999885 457888888888888887542211
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 233 -------------------------------------------------------------------------------- 232 (445)
T 2ovr_B 233 -------------------------------------------------------------------------------- 232 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
..+.+|...+.++. + ++
T Consensus 233 -----------------------------------------------------------~~~~~~~~~v~~~~--~--~~ 249 (445)
T 2ovr_B 233 -----------------------------------------------------------HVLMGHVAAVRCVQ--Y--DG 249 (445)
T ss_dssp -----------------------------------------------------------EEEECCSSCEEEEE--E--CS
T ss_pred -----------------------------------------------------------EEEcCCcccEEEEE--E--CC
Confidence 11222333344433 2 22
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.. +++++.||.|++||+.+++ ....+
T Consensus 250 ~~-l~~~~~dg~i~iwd~~~~~-----------------------------------------------------~~~~~ 275 (445)
T 2ovr_B 250 RR-VVSGAYDFMVKVWDPETET-----------------------------------------------------CLHTL 275 (445)
T ss_dssp SC-EEEEETTSCEEEEEGGGTE-----------------------------------------------------EEEEE
T ss_pred CE-EEEEcCCCEEEEEECCCCc-----------------------------------------------------EeEEe
Confidence 22 4444444444444444333 23334
Q ss_pred eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
..|...|.++++ ++.++++++.||.|++||+.+++.+..+.+|...+.++.++ +++|++++.||.|++||+.++++
T Consensus 276 ~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE
Confidence 456666777777 67889999999999999999999999999999999988875 67999999999999999999999
Q ss_pred EEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-----ccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 571 LKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-----DKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 571 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
+..+.. |...|++++|+ +++|++++.||.|++||+.+++.+..+ ..|.+.|++++|+|++.++++++.||
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 999986 88899999985 679999999999999999999999888 47889999999999999999999999
Q ss_pred c----EEEEECCch
Q 005254 643 L----VNLWHDSTA 652 (706)
Q Consensus 643 ~----i~vw~~~~~ 652 (706)
+ +.+||+...
T Consensus 430 ~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 430 TEETKLLVLDFDVD 443 (445)
T ss_dssp SSCCEEEEEECCCC
T ss_pred CCccEEEEEECCCC
Confidence 8 999999865
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=345.30 Aligned_cols=336 Identities=16% Similarity=0.248 Sum_probs=274.4
Q ss_pred eccceEEcCCCC-EEEEe----------eCC-eEEEEEccCCe---EEEeecCCCccEEEEEEccCCCEEEEEeccCeEE
Q 005254 21 GGGPLVVSSDGS-FIACA----------CGE-SINIVDLSNAS---IKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 21 ~~~~~~~s~dg~-~l~~~----------~~~-~i~i~d~~~~~---~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
...+++|+|||+ +|+++ +.+ .|++||+.+++ .+..+ .|...|++++|+|++++|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 345699999998 88887 444 89999998876 33333 5889999999999999999999999999
Q ss_pred EEECCC----CeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCe------EEE---EeeCCCCcEEEEE
Q 005254 86 VWDLST----LKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF------CTH---YFKGHKGVVSSIL 151 (706)
Q Consensus 86 iwd~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~------~~~---~~~~~~~~v~~~~ 151 (706)
+||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ... .+..|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999988 4588899999999999999998 8999999999999999999876 333 2367999999999
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc------cceEEEEEEecCC-CEEEEEeCCC---EEEEEeCCCCc
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH------FSRVTSMAITSDG-STLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
|+|++. .++++++.||.|++||+++++.+..+..| ...+.+++|+|++ .++++++.++ .|++||+++..
T Consensus 173 ~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 173 WNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp ECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred eCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 999832 24899999999999999999999888776 7899999999997 5899999888 89999987532
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
..
T Consensus 252 ~~------------------------------------------------------------------------------ 253 (416)
T 2pm9_A 252 TP------------------------------------------------------------------------------ 253 (416)
T ss_dssp SC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
T Consensus 254 -------------------------------------------------------------------------------- 253 (416)
T 2pm9_A 254 -------------------------------------------------------------------------------- 253 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCceeeEeee-CCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 382 DLSSMSCSYVLA-GHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 382 d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
...+. +|...+.++. ++| ++.. +++++.|+.|++||+.+++.+..+..|...|.+++|+|+++.++++
T Consensus 254 -------~~~~~~~~~~~v~~~~--~s~~~~~~-l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 254 -------LQTLNQGHQKGILSLD--WCHQDEHL-LLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC 323 (416)
T ss_dssp -------SBCCCSCCSSCEEEEE--ECSSCSSC-EEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE
T ss_pred -------cEEeecCccCceeEEE--eCCCCCCe-EEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE
Confidence 01222 4566677776 777 4554 9999999999999999999999999999999999999998559999
Q ss_pred ecCCCeEEEEEecCCCCCCCccc-----cccee--------------------EEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPM-----NLKAK--------------------AVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~-----~~~~~--------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
++.|+.|++|++........... ..... .....+..++.+++|+|+|++|++++.
T Consensus 324 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~ 403 (416)
T 2pm9_A 324 ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD 403 (416)
T ss_dssp CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT
T ss_pred EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC
Confidence 99999999999987653322100 00000 011125677889999999999999999
Q ss_pred CCcEEEEeCCCc
Q 005254 515 DRTACVWRLPDL 526 (706)
Q Consensus 515 dg~i~i~d~~~~ 526 (706)
|+.|++|++.+.
T Consensus 404 d~~v~~w~~~~~ 415 (416)
T 2pm9_A 404 GKGVSITNPKIS 415 (416)
T ss_dssp SSCBCCBCCCCC
T ss_pred CCeEEEEEeccC
Confidence 999999998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=356.82 Aligned_cols=521 Identities=11% Similarity=0.080 Sum_probs=380.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc------CeEEEEECCCCeEEEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS------REIRVWDLSTLKCLRS 97 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~ 97 (706)
..+||| +.|+++..+.|++|++.+++. ..+.+|...+.+++|||||++||+++.+ ..|.+||+.+++ ...
T Consensus 19 ~~~~S~--~~iaf~~~~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~ 94 (1045)
T 1k32_A 19 NPDIHG--DRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKR 94 (1045)
T ss_dssp EEEEET--TEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEE
T ss_pred CcEEeC--CEEEEEECCcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEE
Confidence 577885 599999989999999988775 5677899999999999999999987543 479999998887 567
Q ss_pred eeccCCCe-------EEEEECCCCCEEEEecCC------CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE
Q 005254 98 WKGHDGPA-------IGMACHPSGGLLATAGAD------RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 98 ~~~~~~~v-------~~~~~s~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 164 (706)
+..|...+ ..++|||||+++++++.+ ..|.+|++.+++...... +. ...++|+| | +++++
T Consensus 95 lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~--~~~~~~sp-G---~l~~~ 167 (1045)
T 1k32_A 95 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-GP--ATHILFAD-G---RRVIG 167 (1045)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-CS--CSEEEEET-T---EEEEE
T ss_pred cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-CC--cceeeeCC-C---EEEEe
Confidence 88888888 999999999977777643 458888888887544333 32 34677999 6 47776
Q ss_pred ec------------CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcce
Q 005254 165 SD------------DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEM 231 (706)
Q Consensus 165 ~~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~ 231 (706)
+. +....+|....+.....+.+|...+.++.|+++ .++++++.++.+.+|.+.. +.....+.....
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 246 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD 246 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC
Confidence 53 234566654333445566889999999999988 6677777888888887653 333333333334
Q ss_pred eeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEE
Q 005254 232 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311 (706)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (706)
.....+++++. .++.+ .++.|++|+.....+.........
T Consensus 247 ~~~~~~SpDG~-----------------------~la~~-~~~~i~~~d~~~~~l~~l~~~~~~---------------- 286 (1045)
T 1k32_A 247 YYPRHLNTDGR-----------------------RILFS-KGGSIYIFNPDTEKIEKIEIGDLE---------------- 286 (1045)
T ss_dssp SCEEEEEESSS-----------------------CEEEE-ETTEEEEECTTTCCEEECCCCCCC----------------
T ss_pred cceeeEcCCCC-----------------------EEEEE-eCCEEEEecCCceEeeeeccCccc----------------
Confidence 44557777775 23333 588999999854433211000000
Q ss_pred EccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe
Q 005254 312 VLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391 (706)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~ 391 (706)
.......+...+..++|++++++.++++. ++.+.+|+...+....
T Consensus 287 ---------------------------------~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~- 331 (1045)
T 1k32_A 287 ---------------------------------SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK- 331 (1045)
T ss_dssp ---------------------------------BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-
T ss_pred ---------------------------------ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-
Confidence 00001123345667777723566666655 6788889888776543
Q ss_pred eeCCcc-eEEEeeeeeecCCCEEEEEeeCCCcEE-EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEE
Q 005254 392 LAGHSE-IVLCLDTCALSSGKILIVTGSKDNSVR-LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 392 ~~~~~~-~i~~~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
+..+.. .+..+. ++ +++. ++.++.++.+. +|+..+++.... ..+...+..++|+|+|+ +|++++.++.|++|
T Consensus 332 ~~~~~~~~~~~~~--~s-dg~~-l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 332 VPEPLRIRYVRRG--GD-TKVA-FIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK-FAVVANDRFEIMTV 405 (1045)
T ss_dssp CSCCSCEEEEEEC--SS-SEEE-EEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred ccCCCcceEEeee--Ec-CCCe-EEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCC-EEEEECCCCeEEEE
Confidence 455555 777776 66 6666 77777788888 999988765544 37778999999999998 78889999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC----------cEEEEeCCCccEEEEEeecCCcE
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR----------TACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
|+..+. .......|...+.+++|+|||++|++++.++ .|++||+.+++ ...+..|...+
T Consensus 406 d~~tg~----------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 406 DLETGK----------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp ETTTCC----------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred ECCCCc----------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 997653 4444557888899999999999999887654 89999999887 66777788889
Q ss_pred EEEEEccCCCEEEEecCCCcEEEEEcCCCc-------------------------------------------eEEEEee
Q 005254 540 WSVEFSPVDQVVITASGDKTIKIWSISDGS-------------------------------------------CLKTFEG 576 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~~~~~ 576 (706)
..++|+|||++|++++.++...+|+..... .+..+..
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~ 554 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 554 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSC
T ss_pred CCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCC
Confidence 999999999999999887776666542211 1233344
Q ss_pred cccCEEEEEEEeCCCEEEE-------------EeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 577 HTSSVLRASFLTRGAQIVS-------------CGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
|.+.+..+.++|||+++++ ......|.+||+.+++..... ..+.+++|||||++|++++.| .
T Consensus 555 ~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~ 629 (1045)
T 1k32_A 555 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-G 629 (1045)
T ss_dssp CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-S
T ss_pred CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-c
Confidence 6677899999999987775 123457889999988754332 568899999999999998866 7
Q ss_pred EEEEECCchh
Q 005254 644 VNLWHDSTAA 653 (706)
Q Consensus 644 i~vw~~~~~~ 653 (706)
+++|++.+++
T Consensus 630 i~~~d~~~~~ 639 (1045)
T 1k32_A 630 KIYTFPLEKP 639 (1045)
T ss_dssp CEEEEESSCT
T ss_pred EEEEeCccCc
Confidence 9999998776
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=322.28 Aligned_cols=285 Identities=27% Similarity=0.462 Sum_probs=250.9
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc------------------eEEEeeeeeecCCCE
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE------------------IVLCLDTCALSSGKI 412 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~i~~~~~~~~~~~~~ 412 (706)
+|...|.+++|+| +++++++++ ++.+++|++.+++....+..+.. .|.++. ++|+++.
T Consensus 62 ~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSE
T ss_pred CCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCE
Confidence 5889999999998 677888876 58999999999988877765532 377777 8888887
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
+++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++. +|++++.|++|++||+..+ .......
T Consensus 138 -l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~-----------~~~~~~~ 204 (393)
T 1erj_A 138 -LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTG-----------QCSLTLS 204 (393)
T ss_dssp -EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTT-----------EEEEEEE
T ss_pred -EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCC-----------eeEEEEE
Confidence 99999999999999999999999999999999999999987 8999999999999999765 2222334
Q ss_pred cCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEE-------eecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 493 HGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTF-------RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 493 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
+...+.+++++| +++++++++.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 667899999999 8999999999999999999999887776 57899999999999999999999999999999
Q ss_pred cCCC------------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC--
Q 005254 565 ISDG------------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-- 630 (706)
Q Consensus 565 ~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-- 630 (706)
+.+. .+...+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|.+.|.+++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence 9753 45667888999999999999999999999999999999999999999999999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEECCch
Q 005254 631 ----KTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 631 ----~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++++|++|+.||+|++|++...
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=328.23 Aligned_cols=322 Identities=28% Similarity=0.525 Sum_probs=278.0
Q ss_pred CeEEEeecCCCccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEE
Q 005254 50 ASIKSTIEGGSDTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128 (706)
Q Consensus 50 ~~~~~~l~~~~~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 128 (706)
.+....+.+|...| ++ ++++|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.|+.|++
T Consensus 108 ~~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred cceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 33457788998865 55 45568999999999999999999999999999999999999998 669999999999999
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
||+.+++.+..+.+|...|.+++|++ +. +++|+.||.|++||+.+++.+..+.+|...+.+++| +++++++++.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~--l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLHE--KR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET--TE--EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred EECCcCcEEEEECCCCCcEEEEEecC--CE--EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence 99999999999999999999999964 44 999999999999999999999999999999999999 7789999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
||.|++||+++++.+
T Consensus 258 dg~i~iwd~~~~~~~----------------------------------------------------------------- 272 (445)
T 2ovr_B 258 DFMVKVWDPETETCL----------------------------------------------------------------- 272 (445)
T ss_dssp TSCEEEEEGGGTEEE-----------------------------------------------------------------
T ss_pred CCEEEEEECCCCcEe-----------------------------------------------------------------
Confidence 999999987643321
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 273 -------------------------------------------------------------------------------- 272 (445)
T 2ovr_B 273 -------------------------------------------------------------------------------- 272 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
..+.+|...+.++. + ++.. +++++.|+.|++||+.+++.+..+..|...+.++.
T Consensus 273 ---------------------~~~~~~~~~v~~~~--~--~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 273 ---------------------HTLQGHTNRVYSLQ--F--DGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326 (445)
T ss_dssp ---------------------EEECCCSSCEEEEE--E--CSSE-EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred ---------------------EEecCCCCceEEEE--E--CCCE-EEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence 12334555666665 3 4555 89999999999999999999999999999999888
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
++++ ++++++.||.|++||+..+. ....+.. |...|.+++++ ++++++++.||.|++||+.+
T Consensus 327 ~~~~---~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 327 LKDN---ILVSGNADSTVKIWDIKTGQ----------CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EETT---EEEEEETTSCEEEEETTTCC----------EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EeCC---EEEEEeCCCeEEEEECCCCc----------EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 8644 89999999999999997653 3444444 77889999995 57999999999999999999
Q ss_pred ccEEEEE-----eecCCcEEEEEEccCCCEEEEecCCCc----EEEEEcCC
Q 005254 526 LVSVVTF-----RGHKRGIWSVEFSPVDQVVITASGDKT----IKIWSISD 567 (706)
Q Consensus 526 ~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~iwd~~~ 567 (706)
++.+..+ ..|...|.+++|+|++.++++++.||+ |.+||+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 392 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999888 468889999999999999999999998 99999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=330.22 Aligned_cols=346 Identities=23% Similarity=0.346 Sum_probs=275.3
Q ss_pred eEEEEeeccCCCe-EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 93 KCLRSWKGHDGPA-IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 93 ~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.....+.+|...+ .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .+++|+.||.|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT---EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC---EEEEEeCCCCEE
Confidence 3556788998875 66666 56799999999999999999999999999999999999999976 499999999999
Q ss_pred EEECCCCeeEEEeecccceEEEEEEe--cCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAIT--SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (706)
+||+++++.+..+.+|.+.|.+++|+ ++++++++++.||.|++||+.+.............
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----------------- 249 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----------------- 249 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS-----------------
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc-----------------
Confidence 99999999999999999999999998 57789999999999999998765432211000000
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceE
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 329 (706)
T Consensus 250 -------------------------------------------------------------------------------- 249 (464)
T 3v7d_B 250 -------------------------------------------------------------------------------- 249 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecC
Q 005254 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 409 (706)
.. .. ..+.
T Consensus 250 --------------------------------------------------------------------~~--~~--~~~~ 257 (464)
T 3v7d_B 250 --------------------------------------------------------------------PL--VF--HTPE 257 (464)
T ss_dssp --------------------------------------------------------------------SE--EE--SCGG
T ss_pred --------------------------------------------------------------------ce--Ee--eccC
Confidence 00 00 0000
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEE
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAV 489 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 489 (706)
.. ...+..+.+|...+.++ ++++. ++++++.|+.|++||+.... ....
T Consensus 258 ~~-------------------~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~----------~~~~ 305 (464)
T 3v7d_B 258 EN-------------------PYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMK----------CLYI 305 (464)
T ss_dssp GC-------------------TTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTE----------EEEE
T ss_pred CC-------------------eEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCc----------EEEE
Confidence 00 01112234455555555 34444 77788888888888876542 4555
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
+..|...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+.++.
T Consensus 306 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc
Confidence 66788899999999999999999999999999999999999999999999999998 5899999999999999999888
Q ss_pred eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 570 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
...... +...+..++|++++++|++++ ||.|++||+.+++++.. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 384 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 384 RKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 776664 667788899999999999998 89999999999999986 56889999999997 444556667777766654
Q ss_pred C
Q 005254 649 D 649 (706)
Q Consensus 649 ~ 649 (706)
+
T Consensus 461 l 461 (464)
T 3v7d_B 461 L 461 (464)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=342.59 Aligned_cols=373 Identities=14% Similarity=0.227 Sum_probs=284.0
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEee-cCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCC---Ce---EEE
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTI-EGGSDTITALALSP-DDKLLFSSGHSREIRVWDLST---LK---CLR 96 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l-~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~---~~---~~~ 96 (706)
..|+|+++.++.+. .|+ .+++.+..+ .+|...|++++|+| ++++||+|+.||.|++||+.+ +. ...
T Consensus 33 ~~f~~~~~~~~~~~-----~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 33 KEFGPIQEIVRSPN-----MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGGCCCCCCCCCCC-----GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hhcCCccccccccc-----ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 45789999888765 387 567778888 89999999999999 999999999999999999976 43 233
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC---CCeEEEEeeC------------CCCcEEEEEEcCCCCceEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD---GGFCTHYFKG------------HKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~---~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l 161 (706)
.+ .|...|.+++|+|++++|++++.|+.|++||++ +++....+.. +...+.++.+....+..++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 499999999999999999999999999999994 5554443332 4566777774432334459
Q ss_pred EEEecCCeEEEEECCCCeeEEEeec--ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDK--HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
++++.||.|++||+++++.+..+.. |.+.|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 254 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------- 254 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------
Confidence 9999999999999999999999988 899999999999999999999999999999986543332210
Q ss_pred CCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCee
Q 005254 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (706)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (706)
T Consensus 255 -------------------------------------------------------------------------------- 254 (437)
T 3gre_A 255 -------------------------------------------------------------------------------- 254 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceE
Q 005254 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (706)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 399 (706)
.|...+
T Consensus 255 --------------------------------------------------------------------------~~~~~v 260 (437)
T 3gre_A 255 --------------------------------------------------------------------------GDHAPI 260 (437)
T ss_dssp --------------------------------------------------------------------------TTCEEE
T ss_pred --------------------------------------------------------------------------CCCCce
Confidence 122233
Q ss_pred EEeeee--eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 400 LCLDTC--ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 400 ~~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
.++.++ +.+++. ++++++.||.|++||+.+++.+..+..|...+..+.|+|+++. + .+..
T Consensus 261 ~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l----~~~~------------ 322 (437)
T 3gre_A 261 THVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG-L----EELN------------ 322 (437)
T ss_dssp EEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS-G----GGCC------------
T ss_pred EEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc-c----ccce------------
Confidence 333211 233333 4999999999999999999999999999999998999988752 2 1110
Q ss_pred CCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC---CcEEEEEEccCCCEEEEe
Q 005254 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK---RGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~ 554 (706)
..-..|...|++++|+ ++++|++++.||.|++||+.+++....+.+|. ..+....+++...+++..
T Consensus 323 ----------~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 323 ----------FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----------CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----------ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 0002377889999999 78999999999999999999999998888754 345566666666555544
Q ss_pred cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC--CCEEEEEeCCCCEEEEE
Q 005254 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWT 606 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd 606 (706)
|+...+........|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 --------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 --------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred --------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 333444555666679999999999998 77999999999999995
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=314.26 Aligned_cols=294 Identities=25% Similarity=0.424 Sum_probs=240.8
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc--eeeEee-eC-CcceEEEeeeeeecCCCEEEEEeeCC
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVL-AG-HSEIVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
....+.+|...|.++.|.+. ++++++.|+.|++||+..+ .....+ .+ |...|.++. ++|+++. +++++.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~--~sp~~~~-las~s~D 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA--WRPHTSL-LAAGSFD 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEE--ECTTSSE-EEEEETT
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEE--ECCCCCE-EEEEeCC
Confidence 34567789999999999864 9999999999999999875 344445 34 999999998 8888877 9999999
Q ss_pred CcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 421 NSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 421 g~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
+.|++||... .+.+..+.+|...|.+++|+|+++ +|++++.|++|++||+..... .......+..|
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~------~~~~~~~~~~h 152 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGE------EYECISVLQEH 152 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCC------CCEEEEEECCC
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCC------CeEEEEEeccC
Confidence 9999999853 456777889999999999999987 899999999999999953311 11245567789
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCcEEEEEEccC--CCEEEEecCCCcEEEEEcCCC-
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWSVEFSPV--DQVVITASGDKTIKIWSISDG- 568 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~- 568 (706)
...|.+++|+|++.+|++++.|+.|++||..++ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~ 232 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCC
Confidence 999999999999999999999999999998766 677889999999999999998 678999999999999998754
Q ss_pred -------ceEEEEee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe--EEEE-eccCCC-cEEEEEEcC--CCCE
Q 005254 569 -------SCLKTFEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE--CIAT-YDKHED-KIWALAVGK--KTEM 634 (706)
Q Consensus 569 -------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~~~~s~--~~~~ 634 (706)
.+...+.. |...|.+++|++++ +|++++.||.|++||..+++ .+.. ..+|.. .|.+++|+| ++++
T Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp TTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 34455554 88999999999664 89999999999999998874 3333 357887 899999999 7899
Q ss_pred EEEEeCCCcEEEEECCch
Q 005254 635 FATGGSDALVNLWHDSTA 652 (706)
Q Consensus 635 l~~~~~dg~i~vw~~~~~ 652 (706)
|++++.||.|++|++.+.
T Consensus 312 las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEEEETTSEEEEEEC---
T ss_pred EEEecCCCcEEEEEeccC
Confidence 999999999999998653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=313.83 Aligned_cols=299 Identities=24% Similarity=0.397 Sum_probs=248.0
Q ss_pred CCCeEEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCe-----EEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGF-----CTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
++.++..+|++|.+.|++|+|+|+ +++||+|+.|++|++||+.+++ +...+.+|...|.+++|+|+++. +++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~--l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF--ALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE--EEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE--EEE
Confidence 445667789999999999999997 6899999999999999997643 56778899999999999998876 999
Q ss_pred EecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCC
Q 005254 164 GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSA 243 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (706)
++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||........
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~------------------- 164 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT------------------- 164 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-------------------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-------------------
Confidence 9999999999999999988888888999999999999999999999999999875422110
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
T Consensus 165 -------------------------------------------------------------------------------- 164 (340)
T 4aow_A 165 -------------------------------------------------------------------------------- 164 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEee
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~ 403 (706)
....+|...+.++.
T Consensus 165 ------------------------------------------------------------------~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 165 ------------------------------------------------------------------VQDESHSEWVSCVR 178 (340)
T ss_dssp ------------------------------------------------------------------ECSSSCSSCEEEEE
T ss_pred ------------------------------------------------------------------EEeccccCcccceE
Confidence 01223444455554
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+...+... ++++++.|+.|++||+.+++.+..+.+|...|++++|+|+++ +|++++.|+.|++||+....
T Consensus 179 ~~~~~~~~-~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~-------- 248 (340)
T 4aow_A 179 FSPNSSNP-IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGK-------- 248 (340)
T ss_dssp ECSCSSSC-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTE--------
T ss_pred EccCCCCc-EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCc--------
Confidence 21222233 488999999999999999999999999999999999999987 89999999999999998652
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe---------ecCCcEEEEEEccCCCEEEEe
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR---------GHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~ 554 (706)
.. ....+...+.+++++|++.++ +++.|+.|++||++++..+..+. +|...|++++|+|++++|++|
T Consensus 249 --~~-~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 249 --HL-YTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp --EE-EEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred --ee-eeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 22 233456789999999988655 55569999999999887766554 588899999999999999999
Q ss_pred cCCCcEEEEEcCCCc
Q 005254 555 SGDKTIKIWSISDGS 569 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~ 569 (706)
+.||.|+|||+++|+
T Consensus 325 s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 325 YTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTSCEEEEEEEC--
T ss_pred eCCCEEEEEeCCCcC
Confidence 999999999999885
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=343.82 Aligned_cols=352 Identities=12% Similarity=0.129 Sum_probs=249.8
Q ss_pred EEEeecCCCccEEEEEEccCC---------CEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC
Q 005254 52 IKSTIEGGSDTITALALSPDD---------KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA 122 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 122 (706)
....+. +.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.+++++.
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~ 181 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKH 181 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCC
Confidence 333444 57899999999987 899999866420 013799999999999
Q ss_pred CCcEEEEECCCCeEE----EEeeCCCCcEEEEEEcCCC----CceEEEEEecCCeEEEEECCCCee-----------EEE
Q 005254 123 DRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDLLAKKC-----------VAT 183 (706)
Q Consensus 123 d~~i~vw~~~~~~~~----~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~ 183 (706)
|++|+|||+.+++.. ..+.+|.+.|..++|+|++ +..+|++++.||+|++||+.+++. ...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 999999999877642 3456788999999999972 345699999999999999976642 236
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
+.+|...|.+++|++++ .|++|+.||.|++||++++..
T Consensus 262 l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~----------------------------------------- 299 (524)
T 2j04_B 262 LSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV----------------------------------------- 299 (524)
T ss_dssp ECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS-----------------------------------------
T ss_pred EEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC-----------------------------------------
Confidence 77899999999999864 899999999999999864210
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
T Consensus 300 -------------------------------------------------------------------------------- 299 (524)
T 2j04_B 300 -------------------------------------------------------------------------------- 299 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
....+.+|...|.++.+.+.+++..+|++++.|++|
T Consensus 300 --------------------------------------------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 300 --------------------------------------------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp --------------------------------------------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred --------------------------------------------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 011345677778777433555553559999999999
Q ss_pred EEEeCCCceEEEEEeCCCc--CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 424 RLWDSESRCCVGVGTGHMG--AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
++||+.+++....+.+|.. .|.+++|+|+++ .+++++.|++|++||++... ....+.+|...|++++
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~----------~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAF----------AVHPLVSRETTITAIG 404 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTT----------CCEEEEECSSCEEEEE
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccc----------cceeeecCCCceEEEE
Confidence 9999998877666655543 588999999987 68999999999999988653 3455678999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCceEEEEe
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSCLKTFE 575 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 575 (706)
|+|+|++|++|+.||+|++||+.... +..... +...+..++|+|+++.+.. ..+ +.+|+.. ++.++..+.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKID 480 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeec
Confidence 99999999999999999999986541 111111 1225789999999985533 222 3444433 577888899
Q ss_pred ecccCEEEEEEEeCCC---EEEEEeCCCCEEEEECC
Q 005254 576 GHTSSVLRASFLTRGA---QIVSCGADGLVKLWTVR 608 (706)
Q Consensus 576 ~~~~~i~~~~~s~~~~---~l~~~~~dg~i~iwd~~ 608 (706)
+|...|.+++|+|++. .||+|+.||.|+||++.
T Consensus 481 gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 9999999999999964 99999999999999985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=313.26 Aligned_cols=248 Identities=24% Similarity=0.384 Sum_probs=217.6
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+.+|...|.++. +.|++.. +++++.|+.|++|+............+...+....+++++. ++++++.|+.+++||
T Consensus 81 ~l~~h~~~V~~~~--~s~dg~~-l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 81 ALRGHSHFVSDVV--ISSDGQF-ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWN 156 (340)
T ss_dssp EECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred EEeCCCCCEEEEE--ECCCCCE-EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEE
Confidence 4567888888887 7888877 99999999999999999999999999999999999999977 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
..... ........|...+..+++++++ .++++++.|+.|++||+.+++....+.+|...|++++|+|++
T Consensus 157 ~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 157 TLGVC---------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp TTSCE---------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred eCCCc---------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC
Confidence 86531 1233345678889999998865 578899999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---------cC
Q 005254 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---------KH 619 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~ 619 (706)
++|++++.||.|++||+.+.+++..+. +...+.++.|+|++.+ ++++.|+.|++||+.++..+..+. +|
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred CEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 999999999999999999999998887 4568999999998754 556679999999999988776654 68
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 620 EDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 620 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
...|++++|+||+++|++|+.||.|++||+.+|.
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 8999999999999999999999999999999875
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=323.48 Aligned_cols=346 Identities=24% Similarity=0.409 Sum_probs=272.0
Q ss_pred EEEeecCCCccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q 005254 52 IKSTIEGGSDTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130 (706)
Q Consensus 52 ~~~~l~~~~~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~ 130 (706)
....+.+|...| +++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.|++|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456888998874 66666 57899999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
+++++.+..+.+|...|.+++|++..+..++++++.||.|++||+.++.......... ....+.+.+++...+..
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 264 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-DYPLVFHTPEENPYFVG---- 264 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C-CSSEEESCGGGCTTEEE----
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC-CcceEeeccCCCeEEEE----
Confidence 9999999999999999999999975555679999999999999998876544332111 11112222222110000
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
..
T Consensus 265 ---~~--------------------------------------------------------------------------- 266 (464)
T 3v7d_B 265 ---VL--------------------------------------------------------------------------- 266 (464)
T ss_dssp ---EE---------------------------------------------------------------------------
T ss_pred ---Ec---------------------------------------------------------------------------
Confidence 00
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
.++...+.++. +++.+++
T Consensus 267 -----------------------------------------------------------~~~~~~v~~~~---~~~~~l~ 284 (464)
T 3v7d_B 267 -----------------------------------------------------------RGHMASVRTVS---GHGNIVV 284 (464)
T ss_dssp -----------------------------------------------------------CCCSSCEEEEE---EETTEEE
T ss_pred -----------------------------------------------------------cCccceEEEEc---CCCCEEE
Confidence 00111111221 2456777
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
+++.++.|++||+.+++....+.+|...+.++. +.++++. +++++.||.|++||+.+++.+..+..|...|.+++++
T Consensus 285 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCEEEEE--EcCCCCE-EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 777888888888888888888888999999998 8888887 9999999999999999999999999999999999998
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
+. ++++++.||.|++||+.... ......+...+..++++|+++++++++ ||.|++||+.+++.+.
T Consensus 362 ~~---~l~s~s~dg~v~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 362 DK---FLVSAAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SS---EEEEEETTSEEEEEETTTCC-----------EEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CC---EEEEEeCCCcEEEEECCCCc-----------eeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 53 89999999999999998642 223334677788899999999999998 8999999999999887
Q ss_pred E-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 531 T-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 531 ~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 427 ~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 427 ANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 5 66789999999997 345566666777655543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=340.82 Aligned_cols=362 Identities=12% Similarity=0.100 Sum_probs=254.4
Q ss_pred CeEEEEeeccCCCeEEEEECCCC---------CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSG---------GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++....+. +.+.|.+|+|+|++ ++||+++.++.. -..+|+++. ++
T Consensus 124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~--la 177 (524)
T 2j04_B 124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEM--FD 177 (524)
T ss_dssp CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhhhh--hc
Confidence 34444555 67899999999987 799998865420 012576665 89
Q ss_pred EEecCCeEEEEECCCCeeE----EEeecccceEEEEEEecC------CCEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 163 SGSDDATVRVWDLLAKKCV----ATLDKHFSRVTSMAITSD------GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
+++.|++|+|||+.+++.. ..+..|.+.|.+++|+|+ +.+|++++.||.|++||+.++.......
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~----- 252 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF----- 252 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-----
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-----
Confidence 9999999999999877642 345677889999999997 5799999999999999986542110000
Q ss_pred eeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
T Consensus 253 -------------------------------------------------------------------------------- 252 (524)
T 2j04_B 253 -------------------------------------------------------------------------------- 252 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
. ........+
T Consensus 253 --------------------------------------------------------------------~--~~~~p~~~l 262 (524)
T 2j04_B 253 --------------------------------------------------------------------K--MCEKPSLTL 262 (524)
T ss_dssp --------------------------------------------------------------------E--CCCSCSEEE
T ss_pred --------------------------------------------------------------------e--eecCceEEE
Confidence 0 000011245
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc-eEEEEEeCCCcCeEEE--EEecCCCeEEEEecCCCeEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR-CCVGVGTGHMGAVGAV--AFSKKLQNFLVSGSSDHTIKVW 469 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~d~~i~i~ 469 (706)
.+|...+.+++ +.++ .. |++|+.||+|++||+.++ .....+..|...|.++ +|++++..+|++++.|++|++|
T Consensus 263 ~~h~~~v~sv~--~s~~-~~-lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 263 SLADSLITTFD--FLSP-TT-VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp CCTTTCEEEEE--ESSS-SE-EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred EcCCCCEEEEE--ecCC-Ce-EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 56778888887 5554 34 999999999999999876 4456688999999999 5677763489999999999999
Q ss_pred EecCCCCCCCcccccceeEEEeecCc--ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC
Q 005254 470 SFDGLSDDAEQPMNLKAKAVVAAHGK--DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 547 (706)
|++... ....+.+|.. .|.+++|+|+++.+++++.|++|++||++++..+..+.+|...|++++|+|+
T Consensus 339 D~~~~~----------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 339 NPKDIA----------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp CGGGHH----------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred ECCCCC----------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 997542 2223344432 4789999999999999999999999999999888889999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEEee-----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEeccCCC
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTFEG-----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKHED 621 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 621 (706)
+++|++|+.||+|++||+... .+..+.. +...+..++|+|+++.+. ... .+.+|+.. ++.++..+.+|..
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCC
T ss_pred CCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCc
Confidence 999999999999999998653 2222111 112577899999998553 222 23444443 5778888999999
Q ss_pred cEEEEEEcCCCC---EEEEEeCCCcEEEEECCch
Q 005254 622 KIWALAVGKKTE---MFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 622 ~v~~~~~s~~~~---~l~~~~~dg~i~vw~~~~~ 652 (706)
.|.+++|+|++. ++++|+.||.|+||++.-+
T Consensus 485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 485 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 999999999965 9999999999999998754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=336.62 Aligned_cols=379 Identities=15% Similarity=0.256 Sum_probs=290.4
Q ss_pred EEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCC---Ce---EEE
Q 005254 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDG---GF---CTH 138 (706)
Q Consensus 67 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~---~~---~~~ 138 (706)
.|+|+++.+++++ .|+ .+++++..+ .+|...|++++|+| ++++||+|+.|+.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888888765 388 567888888 88999999999999 999999999999999999976 43 223
Q ss_pred EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC---CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEE
Q 005254 139 YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL---AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215 (706)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 215 (706)
.+ .|...|.+++|+|+++. +++++.||.|++||++ +++....+..| .+..+.|++++ ..+..+.++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------~~~~~~~~~ 175 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDA--FAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------KNEYAVRMR 175 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSE--EEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------SCCCEEEEE
T ss_pred ec-cCCCCEEEEEEeCCCCE--EEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------cccCceEEE
Confidence 33 49999999999998776 9999999999999994 66666666555 66677766643 001111111
Q ss_pred eCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccc
Q 005254 216 DLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT 295 (706)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 295 (706)
.
T Consensus 176 ~------------------------------------------------------------------------------- 176 (437)
T 3gre_A 176 A------------------------------------------------------------------------------- 176 (437)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecC
Q 005254 296 ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNI 375 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~ 375 (706)
+..+++.++++++.+
T Consensus 177 -----------------------------------------------------------------~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 177 -----------------------------------------------------------------FVNEEKSLLVALTNL 191 (437)
T ss_dssp -----------------------------------------------------------------EECSSCEEEEEEETT
T ss_pred -----------------------------------------------------------------EEcCCCCEEEEEeCC
Confidence 011256677788888
Q ss_pred CcEEEEeCCCceeeEeeeC--CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEec-
Q 005254 376 EQVQVYDLSSMSCSYVLAG--HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSK- 451 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~- 451 (706)
+.|++||+.+++....+.. |...+.++. +.|++.. +++|+.||.|++||+.+++.+..+. .|...|.+++++|
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSIC--IDEECCV-LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEE--ECTTSCE-EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEE--ECCCCCE-EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence 8888888888888888887 788999998 8888777 9999999999999999999998876 7888999996665
Q ss_pred ---CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 452 ---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 452 ---~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
++. ++++++.||.|++||+..+. ....+..|...+..+.|+|+++.+ .+..
T Consensus 269 ~s~~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l----~~~~----------- 322 (437)
T 3gre_A 269 YGKNSV-IVVGGSSKTFLTIWNFVKGH----------CQYAFINSDEQPSMEHFLPIEKGL----EELN----------- 322 (437)
T ss_dssp TCTTEE-EEEEESTTEEEEEEETTTTE----------EEEEEESSSSCCCGGGGSCBCSSG----GGCC-----------
T ss_pred cCCCcc-EEEEEcCCCcEEEEEcCCCc----------EEEEEEcCCCCCccceeccccccc----ccce-----------
Confidence 444 89999999999999998653 566777888888888999987665 1111
Q ss_pred EEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc---cCEEEEEEEeCCCEEEEEeCCCCEE
Q 005254 529 VVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT---SSVLRASFLTRGAQIVSCGADGLVK 603 (706)
Q Consensus 529 ~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~dg~i~ 603 (706)
+.+ |...|++++|+ ++++|++++.|+.|++||+.++++...+.+|. ..+....++++..+++..
T Consensus 323 ---~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 391 (437)
T 3gre_A 323 ---FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK------- 391 (437)
T ss_dssp ---CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE-------
T ss_pred ---ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe-------
Confidence 334 88999999999 78999999999999999999999999988764 345556666665555444
Q ss_pred EEECCCCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 005254 604 LWTVRTGECIATYDKHEDKIWALAVGKK--TEMFATGGSDALVNLWH 648 (706)
Q Consensus 604 iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~ 648 (706)
|+...+........|.+.|++++|+++ +.+|++++.||.|++|+
T Consensus 392 -~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 444445555666789999999999998 77999999999999995
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=307.38 Aligned_cols=305 Identities=19% Similarity=0.246 Sum_probs=273.2
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
......+.+|...|.+++|++ +++++++++.++.|++||+.+++....+.+|...+.++. +.++++. +++++.||.
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~s~~~dg~ 97 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID--VDCFTKY-CVTGSADYS 97 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEE--ECTTSSE-EEEEETTTE
T ss_pred ccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEE--EcCCCCE-EEEEeCCCe
Confidence 345567788999999999998 788999999999999999999999999999999999998 8888777 899999999
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcc-cccceeEEEeecCc-
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQP-MNLKAKAVVAAHGK- 495 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 495 (706)
|++||+.+++.+..+. +...+.+++|+|++. ++++++.+ +.|.+|++.......... ...........+..
T Consensus 98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEETTTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEEEECCCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 9999999999988887 889999999999988 78888888 999999998764322111 11123334445555
Q ss_pred -ceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 496 -DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 496 -~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
.+.+++|+|++++|++++.||.|++||+.+ .+....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 899999999999999999999999999998 788889999999999999999999999999999999999999999988
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCC--------------CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADG--------------LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
+. +...+..++|+|+++++++++.++ .+++||+.+++++..+.+|...|++++|+|++++|++++
T Consensus 256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence 88 788999999999999999999988 899999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCchhH
Q 005254 640 SDALVNLWHDSTAAE 654 (706)
Q Consensus 640 ~dg~i~vw~~~~~~~ 654 (706)
.||.|++|++..+..
T Consensus 335 ~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 335 EDGFIRLHHFEKSYF 349 (369)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCeEEEEECccccc
Confidence 999999999988764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=316.19 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=261.9
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce------eeEeeeCCcceEEEeeeeeecC----C---
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS------CSYVLAGHSEIVLCLDTCALSS----G--- 410 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~----~--- 410 (706)
.....+.+|...|.+++|.+ .++++++.+|.|++|++.+++ ....+.+|...|.++. +.++ +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~g~~~ 81 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD--VLQAIERDAFEL 81 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEE--EEEEEETTTEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEE--EecccccCCccc
Confidence 44566778999999999976 799999999999999999887 7788889999999998 7776 5
Q ss_pred CEEEEEeeCCCcEEEEeCCCceE-----EEEEeCC-----CcCeEEEEEe----cCCCeE-EEEecCCCeEEEEEecC--
Q 005254 411 KILIVTGSKDNSVRLWDSESRCC-----VGVGTGH-----MGAVGAVAFS----KKLQNF-LVSGSSDHTIKVWSFDG-- 473 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~-l~~~~~d~~i~i~~~~~-- 473 (706)
.. +++++.||.|++||+.+++. +..+..| ...|.+++|+ |++. + +++++.||.|++||+..
T Consensus 82 ~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 82 CL-VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EE-EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSS
T ss_pred cE-EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccc
Confidence 55 99999999999999998876 7888888 5999999999 9987 6 99999999999999987
Q ss_pred ----CCCCCCcccccceeEEE-------eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---c---C
Q 005254 474 ----LSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---H---K 536 (706)
Q Consensus 474 ----~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~ 536 (706)
..... ......+ ..|...|.+++|+|++ ++++++.||.|++||+.+++.+..+.. | .
T Consensus 160 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 160 DESNSLTLN-----WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp SHHHHTTTC-----CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred cccccceee-----ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 32111 1111133 3478899999999999 999999999999999999999999998 9 9
Q ss_pred CcEEEEEEccCCCEEEEecCC---CcEEEEEcCCCceEEEEee-------------cccCEEEEEEEeCCCEEEEEeCCC
Q 005254 537 RGIWSVEFSPVDQVVITASGD---KTIKIWSISDGSCLKTFEG-------------HTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
..|.+++|+|++++|++++.| |.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||
T Consensus 234 ~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999999999999 9999999999999999998 999999999999999999999999
Q ss_pred CEEEEECCCCeEEEEec------cC---------------CCcEEEEEEcCCC----------CEEEEEeCCCcEEEEEC
Q 005254 601 LVKLWTVRTGECIATYD------KH---------------EDKIWALAVGKKT----------EMFATGGSDALVNLWHD 649 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~vw~~ 649 (706)
.|++||+.+++++..+. .| ...|.+++|+|++ ++|++++.||.|++|++
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999999 88 9999999999998 79999999999999999
Q ss_pred Cchh
Q 005254 650 STAA 653 (706)
Q Consensus 650 ~~~~ 653 (706)
.+++
T Consensus 394 ~~g~ 397 (397)
T 1sq9_A 394 AGGK 397 (397)
T ss_dssp EC--
T ss_pred CCCC
Confidence 8763
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=306.37 Aligned_cols=306 Identities=19% Similarity=0.250 Sum_probs=262.2
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
.....+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++. +++++.||.|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~dg~i~i 100 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY--CVTGSADYSIKL 100 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCE--EEEEeCCCeEEE
Confidence 345568899999999999999999999999999999999999999999999999999999998776 999999999999
Q ss_pred EECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccc
Q 005254 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (706)
||+.+++.+..+. +...+.+++|+|+++++++++.+ |.|++||+........+...
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------------------ 161 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV------------------ 161 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE------------------
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc------------------
Confidence 9999999998887 88999999999999999999998 99999997654322111000
Q ss_pred cccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCc
Q 005254 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQ 327 (706)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 327 (706)
T Consensus 162 -------------------------------------------------------------------------------- 161 (369)
T 3zwl_B 162 -------------------------------------------------------------------------------- 161 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeee
Q 005254 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTC 405 (706)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~ 405 (706)
.......+..|.. .+.++.
T Consensus 162 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~-- 182 (369)
T 3zwl_B 162 ---------------------------------------------------------SEEPIHKIITHEGLDAATVAG-- 182 (369)
T ss_dssp ---------------------------------------------------------CSSCSEEEECCTTCCCEEEEE--
T ss_pred ---------------------------------------------------------ccceeeeccCCcCccceeEEE--
Confidence 0001112223333 666776
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCC-ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.++++. +++++.||.|++||+.+ .+.+..+..|...|.+++|+|++. +|++++.|+.|++||+....
T Consensus 183 ~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~--------- 251 (369)
T 3zwl_B 183 WSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQ--------- 251 (369)
T ss_dssp ECGGGCE-EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC---------
T ss_pred EcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCc---------
Confidence 7787777 89999999999999998 788889999999999999999987 89999999999999998653
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCCC--------------cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--------------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
....+ .+...+.+++|+|+++++++++.++ .+++||+.+++.+..+.+|...|++++|+|++++
T Consensus 252 -~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 252 -VLKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp -EEEEE-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred -eeeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCE
Confidence 22333 3778899999999999999999988 8999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCceE
Q 005254 551 VITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~ 571 (706)
|++++.||.|++|+++++...
T Consensus 330 l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEEEETTSEEEEEEECHHHHT
T ss_pred EEEEcCCCeEEEEECccccch
Confidence 999999999999999765443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=332.42 Aligned_cols=294 Identities=21% Similarity=0.321 Sum_probs=256.1
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc-----eeeEeeeCCcceEEEeeeeeecCCCEEEEEee
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM-----SCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
.....+.+|...|.++++.+++..++++++.|+.|++|++... .....+.+|...|.++. ++++++. +++|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~--~s~~g~~-l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV--LSSDGQF-ALSGS 449 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEE--ECTTSSE-EEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEE--ECCCCCE-EEEEe
Confidence 3445678999999999999988899999999999999998753 44567899999999998 8888887 99999
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
.|+.|++||+.+++.+..+.+|...|.+++|+|+++ ++++++.|++|++||..... ..........|...|.
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC-------KYTISEGGEGHRDWVS 521 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE-------EEEECSSTTSCSSCEE
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc-------ceeeccCCCCCCCcEE
Confidence 999999999999999999999999999999999987 89999999999999975421 0000011135778899
Q ss_pred EEEEcCCC--CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 499 SLAVAPND--SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 499 ~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
+++|+|++ ..+++++.|+.|++||+.+++....+.+|...|++++|+|++++|++++.||.|++||+.+++++..+.
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~- 600 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE- 600 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-
Confidence 99999987 689999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-------------------CcEEEEEEcCCCCEEEE
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------------------DKIWALAVGKKTEMFAT 637 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~~~~s~~~~~l~~ 637 (706)
+...+.+++|+|++.+|++++ ++.|++||+.+++.+..+..+. ..+++++|+||+++|++
T Consensus 601 ~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 601 ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 456899999999998888776 4569999999999888775332 13789999999999999
Q ss_pred EeCCCcEEEEECC
Q 005254 638 GGSDALVNLWHDS 650 (706)
Q Consensus 638 ~~~dg~i~vw~~~ 650 (706)
|+.||.|++|++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999985
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=313.21 Aligned_cols=309 Identities=18% Similarity=0.186 Sum_probs=250.5
Q ss_pred EEEEccCCeEEEeecCCCccEEEEEEccCC-CEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECC-CCCEEE
Q 005254 43 NIVDLSNASIKSTIEGGSDTITALALSPDD-KLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHP-SGGLLA 118 (706)
Q Consensus 43 ~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~ 118 (706)
.+++..+.+....+.+|...|++++|+|++ ++||+|+.||.|++||+.+++....+. +|...|.+++|+| ++++|+
T Consensus 56 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred ccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 344556677788999999999999999999 999999999999999999888777765 6999999999999 789999
Q ss_pred EecCCCcEEEEECCCCeEEEEeeCC---CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEE
Q 005254 119 TAGADRKVLVWDVDGGFCTHYFKGH---KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 195 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 195 (706)
+++.|+.|++||+.+ ..+..+..+ ...|.+++|+|+++. +++++.||.|++||+ +++.+..+..|...|.+++
T Consensus 136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM--LATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTE--EEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCE--EEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 999999999999996 445555444 488999999998876 999999999999999 6788889999999999999
Q ss_pred EecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCC
Q 005254 196 ITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274 (706)
Q Consensus 196 ~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (706)
|+|+++ ++++++.|+.|++||+++.+...
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------------------------- 241 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKN-------------------------------------------------- 241 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTT--------------------------------------------------
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCccc--------------------------------------------------
Confidence 999999 89999999999999986532100
Q ss_pred eEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc
Q 005254 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE 354 (706)
Q Consensus 275 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (706)
T Consensus 242 -------------------------------------------------------------------------------- 241 (383)
T 3ei3_B 242 -------------------------------------------------------------------------------- 241 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
.....+ +|...+.++. +.| ++.. +++++.|+.|++||+.+++.
T Consensus 242 --------------------------------~~~~~~-~~~~~v~~~~--~s~~~~~~-l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 242 --------------------------------SYIAEM-PHEKPVNAAY--FNPTDSTK-LLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp --------------------------------CEEEEE-ECSSCEEEEE--ECTTTSCE-EEEEESSSEEEEEETTBTTS
T ss_pred --------------------------------ceEEEe-cCCCceEEEE--EcCCCCCE-EEEEcCCCcEEEEECCCCcc
Confidence 000011 3555677776 777 6666 88999999999999988765
Q ss_pred EEEEeCCCcC-------eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 434 VGVGTGHMGA-------VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 434 ~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
...+..|... +. +.|+| ...+..++++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~p------------------------------------------~~~~~~~~~s~dg 322 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIK-ATWHP------------------------------------------MYDLIVAGRYPDD 322 (383)
T ss_dssp CSEEEECCBCCCTTSCCCC-CEECS------------------------------------------SSSEEEEECBCCT
T ss_pred ccccccccccccccccceE-EeccC------------------------------------------CCCceEEEecCCc
Confidence 5444433211 11 12222 2345678889999
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
++ +++.||.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|++||+++
T Consensus 323 ~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 323 QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88 899999999999999999999987 557788889999999999997 99999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=317.78 Aligned_cols=364 Identities=18% Similarity=0.247 Sum_probs=260.1
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCeEEEEee-------------ccCCCeE
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKCLRSWK-------------GHDGPAI 106 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~v~ 106 (706)
.+++|++..++....+.+|...|++++|+| ++++||+++.||.|++||+.+++....+. +|...|.
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 577888888888888999999999999999 99999999999999999999887665553 5999999
Q ss_pred EEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEecCCeEEEEECCCCeeEEEe
Q 005254 107 GMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGSDDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 107 ~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~ 184 (706)
+++|+| ++.+|++++.|+.|++||+.+++....+. +...+.+++|+|.+. ..++++++.+|.|++||+.+++.+..+
T Consensus 104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 999999 78899999999999999999999888877 888999999998653 335999999999999999999999999
Q ss_pred ecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 185 DKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
..|...|.+++|+|+++ .+++++.||.|++||+++.......
T Consensus 183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~------------------------------------- 225 (408)
T 4a11_B 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT------------------------------------- 225 (408)
T ss_dssp CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE-------------------------------------
T ss_pred cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc-------------------------------------
Confidence 99999999999999998 5889999999999998754311000
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceee
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMEL 343 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (706)
T Consensus 226 -------------------------------------------------------------------------------- 225 (408)
T 4a11_B 226 -------------------------------------------------------------------------------- 225 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
+..+.... .
T Consensus 226 ------------------------------------------------~~~~~~~~------~----------------- 234 (408)
T 4a11_B 226 ------------------------------------------------LDQHNGKK------S----------------- 234 (408)
T ss_dssp ------------------------------------------------CCTTTTCS------C-----------------
T ss_pred ------------------------------------------------cccccccc------c-----------------
Confidence 00000000 0
Q ss_pred EEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 424 RLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 424 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
.........|...|.+++|+|+++ ++++++.||.|++||+........... .........+......
T Consensus 235 -------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 235 -------QAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYG-----KVCNNSKKGLKFTVSC 301 (408)
T ss_dssp -------CCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCC-----CCCCCCSSCCCCEECC
T ss_pred -------eeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccc-----cccccccccceeEEec
Confidence 000011235778899999999987 899999999999999987642211100 0001111222223333
Q ss_pred CCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEE
Q 005254 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 583 (706)
..+..+++++.++.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.....+...
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--- 378 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--- 378 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------
T ss_pred CCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---
Confidence 44566777788999999999999999999999999999999999999999999999999999999887665433222
Q ss_pred EEEEe-CCCEEEEEeCCCCEEEEECCC
Q 005254 584 ASFLT-RGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 584 ~~~s~-~~~~l~~~~~dg~i~iwd~~~ 609 (706)
..+.+ ....+.+.+.++.+++|+...
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------------
T ss_pred cccccccceeecccCccCceeecCCcc
Confidence 23333 333455677889999998653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-39 Score=312.38 Aligned_cols=325 Identities=20% Similarity=0.273 Sum_probs=251.9
Q ss_pred EeecCCCccEEEEEEccC----CCEEEEEeccCeEEEEECCCCeEEEEeec-----cCCCeEEEEECCC----CCEEEEe
Q 005254 54 STIEGGSDTITALALSPD----DKLLFSSGHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHPS----GGLLATA 120 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~----~~~l~~~ 120 (706)
....+|..+|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 445689999999999984 45566666677999999998887777764 5578999999999 6799999
Q ss_pred cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccceEEEEEE
Q 005254 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAI 196 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 196 (706)
+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.. +++++.||.|++||+++++.+..+ ..|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNL--LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTE--EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCE--EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 9999999999999999999999999999999999 6665 999999999999999999999888 689999999999
Q ss_pred ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeE
Q 005254 197 TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276 (706)
Q Consensus 197 ~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 276 (706)
+|++++|++++.||.|++||+++++....+.... .+.+++.
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~---------------------------------- 210 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY-----DYNPNKT---------------------------------- 210 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH-----TCCGGGC----------------------------------
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeE-----EecCCCC----------------------------------
Confidence 9999999999999999999998766543332100 0000000
Q ss_pred EEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCcee
Q 005254 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 356 (706)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 356 (706)
T Consensus 211 -------------------------------------------------------------------------------- 210 (366)
T 3k26_A 211 -------------------------------------------------------------------------------- 210 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
. +...... . .......
T Consensus 211 -------------------------------------------------------~-~~~~~~~----~----~~~~~~~ 226 (366)
T 3k26_A 211 -------------------------------------------------------N-RPFISQK----I----HFPDFST 226 (366)
T ss_dssp -------------------------------------------------------S-SCCCCEE----E----CCCSEEE
T ss_pred -------------------------------------------------------c-cccccee----e----ccCcccc
Confidence 0 0000000 0 0000112
Q ss_pred EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc----ccccceeEEEeecCcceEEEEEcCC--CCEEE
Q 005254 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ----PMNLKAKAVVAAHGKDINSLAVAPN--DSLVC 510 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~ 510 (706)
...|...|.+++|+ ++ ++++++.|+.|++||+......... .........+..|...|.+++|+|+ +++|+
T Consensus 227 ~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp CSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred ccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 23466777777777 23 7778888888888887665321111 1112345567778889999999999 99999
Q ss_pred EeeCCCcEEEEeCCCcc----EEEEEeec--CCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 511 TGSQDRTACVWRLPDLV----SVVTFRGH--KRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
+++.||.|++||+.+++ ....+..| ...|++++|+|++++|++++.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999875 45577777 7999999999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=294.82 Aligned_cols=295 Identities=22% Similarity=0.315 Sum_probs=254.3
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.+....+.+|...|.+++| |+++. +++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~--l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSK--VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTE--EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCE--EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 3677889999999999999 87776 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+|++......
T Consensus 85 ~~~~~~~~~~---------------------------------------------------------------------- 94 (313)
T 3odt_A 85 GVPLFATSGE---------------------------------------------------------------------- 94 (313)
T ss_dssp EEETTCCTTS----------------------------------------------------------------------
T ss_pred EEEeeecCCC----------------------------------------------------------------------
Confidence 9998642210
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 95 -------------------------------------------------------------------------------- 94 (313)
T 3odt_A 95 -------------------------------------------------------------------------------- 94 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
+....+.+|...+.++. + +++. +++++.|+.|++|| .++....+..|...+.++++.|..
T Consensus 95 -------------~~~~~~~~~~~~i~~~~--~--~~~~-l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 95 -------------DPLYTLIGHQGNVCSLS--F--QDGV-VISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp -------------CC-CEECCCSSCEEEEE--E--ETTE-EEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETT
T ss_pred -------------CcccchhhcccCEEEEE--e--cCCE-EEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCC
Confidence 11113445667777776 4 3444 89999999999999 777888888999999999999933
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
..++++++.|+.|++||... ....... +...+.+++++|++. +++++.||.|++||+.+++.+..+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~ 221 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDK------------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY 221 (313)
T ss_dssp TTEEEEEETTSCEEEEETTE------------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEECCCCEEEEecCc------------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh
Confidence 44899999999999999432 3344444 889999999999998 999999999999999999999999
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++||+.+++.
T Consensus 222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999999999999999 588999999999999999999999999999999999999998 66799999999999998876
Q ss_pred EEEe
Q 005254 613 IATY 616 (706)
Q Consensus 613 ~~~~ 616 (706)
+...
T Consensus 300 ~~~~ 303 (313)
T 3odt_A 300 ASED 303 (313)
T ss_dssp CC--
T ss_pred eehh
Confidence 5444
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=328.67 Aligned_cols=294 Identities=22% Similarity=0.377 Sum_probs=245.2
Q ss_pred eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCC-----CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDG-----GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
+....+++|...|++++|+|++ ++|++|+.|++|++|++.+ +.....+.+|...|.+++|+|+++. +++|+.
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~--l~sgs~ 450 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF--ALSGSW 450 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE--EEEEET
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE--EEEEeC
Confidence 3455788999999999999875 7999999999999999975 3456778899999999999998876 999999
Q ss_pred CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccc
Q 005254 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (706)
||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||.........
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~--------------------- 509 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI--------------------- 509 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE---------------------
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceee---------------------
Confidence 99999999999999999999999999999999999999999999999999643210000
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 510 -------------------------------------------------------------------------------- 509 (694)
T 3dm0_A 510 -------------------------------------------------------------------------------- 509 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 406 (706)
.....+|...+.++. +
T Consensus 510 --------------------------------------------------------------~~~~~~h~~~v~~~~--~ 525 (694)
T 3dm0_A 510 --------------------------------------------------------------SEGGEGHRDWVSCVR--F 525 (694)
T ss_dssp --------------------------------------------------------------CSSTTSCSSCEEEEE--E
T ss_pred --------------------------------------------------------------ccCCCCCCCcEEEEE--E
Confidence 001124556667776 6
Q ss_pred ecCC-CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 407 LSSG-KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 407 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+|++ ...+++++.|+.|++||+.+++....+.+|.+.|++++|+|+++ ++++++.||.|++||+....
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~---------- 594 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGK---------- 594 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTE----------
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc----------
Confidence 6654 23499999999999999999999999999999999999999987 89999999999999997652
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecC-------------------CcEEEEEEcc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------------RGIWSVEFSP 546 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------~~v~~~~~s~ 546 (706)
.. ....+...+.+++|+|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|
T Consensus 595 ~~-~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 672 (694)
T 3dm0_A 595 KL-YSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672 (694)
T ss_dssp EE-ECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred eE-EEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence 11 2223456799999999998888776 5569999999998887765321 1378999999
Q ss_pred CCCEEEEecCCCcEEEEEcC
Q 005254 547 VDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~ 566 (706)
++++|++|+.||.|++||+.
T Consensus 673 dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 673 DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=308.58 Aligned_cols=303 Identities=15% Similarity=0.147 Sum_probs=253.3
Q ss_pred EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe------EEEEeeCCCCcEEEEEEcCC----C---CceE
Q 005254 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF------CTHYFKGHKGVVSSILFHPD----T---DKSL 160 (706)
Q Consensus 94 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~~~ 160 (706)
....+.+|...|++++|+| ++|++++.||.|++||+.+++ .+..+.+|...|.+++|+|+ + +.
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~-- 83 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL-- 83 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE--
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE--
Confidence 4556788999999999999 799999999999999999988 78888899999999999998 6 54
Q ss_pred EEEEecCCeEEEEECCCCee-----EEEeecc-----cceEEEEEEe----cCCCE-EEEEeCCCEEEEEeCCC------
Q 005254 161 LFSGSDDATVRVWDLLAKKC-----VATLDKH-----FSRVTSMAIT----SDGST-LISAGRDKVVNLWDLRD------ 219 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~~w~~~~------ 219 (706)
+++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999998887 8888888 5999999999 99999 99999999999999865
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
.+.+...+
T Consensus 164 ~~~~~~~~------------------------------------------------------------------------ 171 (397)
T 1sq9_A 164 SLTLNWSP------------------------------------------------------------------------ 171 (397)
T ss_dssp HTTTCCCC------------------------------------------------------------------------
T ss_pred cceeeccC------------------------------------------------------------------------
Confidence 22111000
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
.. .+. +.
T Consensus 172 -----------------------------------------------------------------~~-~~~-~~------ 178 (397)
T 1sq9_A 172 -----------------------------------------------------------------TL-ELQ-GT------ 178 (397)
T ss_dssp -----------------------------------------------------------------EE-EEE-EE------
T ss_pred -----------------------------------------------------------------cc-eee-ee------
Confidence 00 000 00
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC---C---CcCeEEEEEecCC
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG---H---MGAVGAVAFSKKL 453 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~ 453 (706)
......|...+.++. +.+++ ++++++.||.|++||+.+++.+..+.. | ...+.+++|+|++
T Consensus 179 ---------~~~~~~~~~~i~~~~--~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 179 ---------VESPMTPSQFATSVD--ISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp ---------ECCSSSSCCCCCEEE--ECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred ---------eccccCCCCCceEEE--ECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 001134566677776 77777 599999999999999999999999998 8 9999999999998
Q ss_pred CeEEEEecCC---CeEEEEEecCCCCCCCcccccceeEEEee-------------cCcceEEEEEcCCCCEEEEeeCCCc
Q 005254 454 QNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAA-------------HGKDINSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 454 ~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~ 517 (706)
. +|++++.| +.|++||+.... ....+.. |...|.+++|+|++++|++++.||.
T Consensus 246 ~-~l~~~~~d~~~g~i~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 314 (397)
T 1sq9_A 246 S-LLAIAHDSNSFGCITLYETEFGE----------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 314 (397)
T ss_dssp T-EEEEEEEETTEEEEEEEETTTCC----------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred C-EEEEEecCCCCceEEEEECCCCc----------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe
Confidence 7 89999999 999999998653 4455555 8899999999999999999999999
Q ss_pred EEEEeCCCccEEEEEe------ec---------------CCcEEEEEEccCC----------CEEEEecCCCcEEEEEcC
Q 005254 518 ACVWRLPDLVSVVTFR------GH---------------KRGIWSVEFSPVD----------QVVITASGDKTIKIWSIS 566 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~ 566 (706)
|++||+.+++.+..+. +| ...|.+++|+|++ ++|++++.||.|++||+.
T Consensus 315 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 315 LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999999999999 88 9999999999998 799999999999999998
Q ss_pred CCc
Q 005254 567 DGS 569 (706)
Q Consensus 567 ~~~ 569 (706)
+++
T Consensus 395 ~g~ 397 (397)
T 1sq9_A 395 GGK 397 (397)
T ss_dssp C--
T ss_pred CCC
Confidence 763
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=304.54 Aligned_cols=289 Identities=15% Similarity=0.186 Sum_probs=248.2
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCC
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDN 421 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg 421 (706)
.....+.+|...|.+++|.+.+..++++++.++.|++||+.+++....+. +|...|.++. +.|++..++++++.|+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMK--FNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEE--EETTEEEEEEEEETTT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEE--eCCCCCCEEEEEeCCC
Confidence 34456778999999999999666999999999999999999887776665 6999999998 8885555699999999
Q ss_pred cEEEEeCCCceEEEEEeC---CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 422 SVRLWDSESRCCVGVGTG---HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 422 ~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
.|++||+.+ ..+..+.. +...|.+++|+|+++ ++++++.|+.|++||++.. ....+..|...|.
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----------~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGH-----------EIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTSC-----------EEEEEECSSSCEE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCCC-----------EEEEeccCCCcEE
Confidence 999999996 44444443 347899999999987 8999999999999998532 5666778999999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEeCCC----ccEEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCCceEE
Q 005254 499 SLAVAPNDS-LVCTGSQDRTACVWRLPD----LVSVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDGSCLK 572 (706)
Q Consensus 499 ~~~~s~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 572 (706)
+++|+|+++ ++++++.|+.|++||+.+ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++...
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 999999999 999999999999999987 5566666 6999999999999 99999999999999999999988877
Q ss_pred EEeecc-----------------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc--CCCcEEEEEEcCCCC
Q 005254 573 TFEGHT-----------------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK--HEDKIWALAVGKKTE 633 (706)
Q Consensus 573 ~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~ 633 (706)
.+.+|. ..+..++|+|++++ +++.||.|++||+.+++++..+.+ |...+..++|+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence 776553 34555777777776 778999999999999999999986 567788889999999
Q ss_pred EEEEEeCCCcEEEEECCc
Q 005254 634 MFATGGSDALVNLWHDST 651 (706)
Q Consensus 634 ~l~~~~~dg~i~vw~~~~ 651 (706)
+|++++ ||.|++|++++
T Consensus 366 ~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 366 VLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEEE-TTEEEEEECC-
T ss_pred EEEEec-CCcEEEEecCC
Confidence 999997 99999999975
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=305.76 Aligned_cols=303 Identities=17% Similarity=0.208 Sum_probs=240.5
Q ss_pred EeecCCCccEEEEEEccCCCEEE-EEec---cCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC---CCEEEEecCCCc
Q 005254 54 STIEGGSDTITALALSPDDKLLF-SSGH---SREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS---GGLLATAGADRK 125 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~-s~~~---d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~---~~~l~~~~~d~~ 125 (706)
+.+.+|...|.+++|+|++..++ +++. |+.|++||+.+++..... .+|...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 55678999999999999996554 5555 899999999998876543 369999999999999 699999999999
Q ss_pred EEEEECCCCe-EEEEeeCCCCcEEEEEE------cCCCCceEEEEEecCCeEEEEECCCCe-eEEEeecccc----eEEE
Q 005254 126 VLVWDVDGGF-CTHYFKGHKGVVSSILF------HPDTDKSLLFSGSDDATVRVWDLLAKK-CVATLDKHFS----RVTS 193 (706)
Q Consensus 126 i~vw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~ 193 (706)
|++||+.+++ .+..+.+|...|.+++| +|+++. +++++.||.|++||+.+++ .+..+..|.+ .+.+
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE--IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCE--EEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccE--EEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 9999999988 88889999999999965 566665 9999999999999999887 6777766554 7888
Q ss_pred EE----EecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 194 MA----ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 194 ~~----~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++ |+|+++++++++.||.|++||+++++...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------------------------------- 204 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW--------------------------------------------- 204 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE---------------------------------------------
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceee---------------------------------------------
Confidence 88 67899999999999999999987543211
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (357)
T 3i2n_A 205 -------------------------------------------------------------------------------- 204 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec---CCCEEEEEeeCCCcEEEE
Q 005254 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS---SGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~l~~~~~dg~i~i~ 426 (706)
...|...+.++. +.| ++.. +++++.||.|++|
T Consensus 205 ------------------------------------------~~~~~~~v~~~~--~~~~~~~~~~-l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 205 ------------------------------------------ETNIKNGVCSLE--FDRKDISMNK-LVATSLEGKFHVF 239 (357)
T ss_dssp ------------------------------------------EEECSSCEEEEE--ESCSSSSCCE-EEEEESTTEEEEE
T ss_pred ------------------------------------------ecCCCCceEEEE--cCCCCCCCCE-EEEECCCCeEEEE
Confidence 112333445554 555 5555 8888889999999
Q ss_pred eCCCceEEEEE-----eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc---------ccccceeEEEee
Q 005254 427 DSESRCCVGVG-----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ---------PMNLKAKAVVAA 492 (706)
Q Consensus 427 d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~---------~~~~~~~~~~~~ 492 (706)
|+.+++....+ ..|...|.+++|+|+++.++++++.||.|++||+......... .........+..
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 98876654444 3899999999999998778999999999999999865432111 011235667788
Q ss_pred cCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCCCccE
Q 005254 493 HGKDINSLAVAPNDSLVC-TGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~ 528 (706)
|...|++++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999999999998 799999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=303.18 Aligned_cols=302 Identities=24% Similarity=0.364 Sum_probs=240.7
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~ 139 (706)
.++.|+||+++ +||+|. |++|+|||..+++.+..+. +|...|++++|+|+|++||+|+.|+.|++||+++++.+..
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 46789999864 777765 8999999999999887665 5778899999999999999999999999999999999999
Q ss_pred eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
+.+|...+.++++++ . ++++|+.|+.+++||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..
T Consensus 185 ~~~h~~~v~~~s~~~--~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 185 MTSHSARVGSLSWNS--Y--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp ECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred EeCCCCceEEEeeCC--C--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 999999999998864 4 4999999999999998764 4567788999999999999999999999999999999976
Q ss_pred CCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcccccc
Q 005254 219 DYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298 (706)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 298 (706)
+++....
T Consensus 261 ~~~~~~~------------------------------------------------------------------------- 267 (420)
T 4gga_A 261 PGEGGWV------------------------------------------------------------------------- 267 (420)
T ss_dssp CCSSCSC-------------------------------------------------------------------------
T ss_pred cccccce-------------------------------------------------------------------------
Confidence 4321000
Q ss_pred ccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcE
Q 005254 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQV 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i 378 (706)
T Consensus 268 -------------------------------------------------------------------------------- 267 (420)
T 4gga_A 268 -------------------------------------------------------------------------------- 267 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEE
Q 005254 379 QVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLV 458 (706)
Q Consensus 379 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 458 (706)
.+.....|...|.+++|+|.+..+++
T Consensus 268 ------------------------------------------------------~~~~~~~~~~~V~~~~~~p~~~~~la 293 (420)
T 4gga_A 268 ------------------------------------------------------PLQTFTQHQGAVKAVAWCPWQSNVLA 293 (420)
T ss_dssp ------------------------------------------------------CSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred ------------------------------------------------------eeeeecccCCceeeeeeCCCcccEEE
Confidence 00112335567778888887776766
Q ss_pred E--ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEEEEee
Q 005254 459 S--GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 459 ~--~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 534 (706)
+ |+.|++|++||+..+ .......+...+.++.|+|+++.+++++ .|+.|++||+.+++++..+.+
T Consensus 294 ~~~gs~D~~I~iwd~~t~-----------~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 294 TGGGTSDRHIRIWNVCSG-----------ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp EEECTTTCEEEEEETTTT-----------EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred EEeecCCCEEEEEeCCcc-----------ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 5 457999999999865 2233334567799999999999988765 789999999999999999999
Q ss_pred cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 535 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
|...|++++|+|+|++|++|+.|++|++||+....+.+..+.+...+....|.
T Consensus 363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 99999999999999999999999999999998777666665555544444443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=316.56 Aligned_cols=356 Identities=17% Similarity=0.258 Sum_probs=250.3
Q ss_pred CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC-CCCceEEEEEecCCeEEEEECCCCeeEEEee-------------ccc
Q 005254 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP-DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------KHF 188 (706)
Q Consensus 123 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~ 188 (706)
++.+++|+++.++....+.+|.+.|.+++|+| +++. +++++.||.|++||+.+++....+. +|.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRY--MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCE--EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCE--EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 45678888888888888899999999999999 8776 9999999999999998876554442 589
Q ss_pred ceEEEEEEec-CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 189 SRVTSMAITS-DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 189 ~~v~~~~~~~-~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
..|.+++|+| ++.+|++++.||.|++||+.+++....+..
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------------------- 140 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--------------------------------------- 140 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---------------------------------------
Confidence 9999999999 778999999999999999876553332211
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
T Consensus 141 -------------------------------------------------------------------------------- 140 (408)
T 4a11_B 141 -------------------------------------------------------------------------------- 140 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
...+.++.+.....+..++++++.++.|++||
T Consensus 141 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 141 ------------------------------------------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp ------------------------------------------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred ------------------------------------------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 11122222111112223489999999999999
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc------cccceeEEEeecCcceEEEE
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP------MNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~ 501 (706)
+.+++.+..+..|...|.+++|+|+++.++++++.||.|++||++......... ...........|...|.+++
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 999999999999999999999999998779999999999999997653211100 00111122256888999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec-----CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 576 (706)
|+|++++|++++.||.|++||+.+++....+..+ ...+........+..+++++.|+.|++||+.+++++..+.+
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 9999999999999999999999988765544332 12222223333456677778899999999999999999999
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK-KTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~ 650 (706)
|...|++++|+|++++|++++.||.|++||+.+++++.....+... ..+.+ +...+.+.+.|+.+++|+..
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999999999999887766543322 22333 33345567789999999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=313.59 Aligned_cols=310 Identities=14% Similarity=0.117 Sum_probs=244.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-c
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-G 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~ 100 (706)
.+++|||||+++|+++.+ +|+ |.+.++ .+++|...|.+++|+|+| .++.+.+|+ ++....+. .
T Consensus 19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~~~~~ 83 (588)
T 2j04_A 19 NNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGLLNSQ 83 (588)
T ss_dssp CCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCSSTTS
T ss_pred EEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEe---CCCceEeecC
Confidence 389999999999999988 676 755554 458999999999999999 455555554 33222333 4
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCC-----cEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKG-----VVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
|...|.+++|||||++||+++.||.|++||.++ ++..+. |.. .|.+++|+|||+. |++|+.||+|++||+
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~--LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS--IVVGNEDGELQFFSI 158 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC--EEEEETTSEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE--EEEEcCCCEEEEEEC
Confidence 688999999999999999999999999999654 666667 665 4999999999988 999999999999999
Q ss_pred CCCee-------EEEe----ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCc
Q 005254 176 LAKKC-------VATL----DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAF 244 (706)
Q Consensus 176 ~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (706)
.+++. +.++ .+|...|.+++|+|+| +++++.|+.|++|++.+.....
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~-------------------- 216 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP-------------------- 216 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC--------------------
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc--------------------
Confidence 88753 5666 6677899999999999 8888999999999986543110
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (588)
T 2j04_A 217 -------------------------------------------------------------------------------- 216 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee-eCCcceEEEee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL-AGHSEIVLCLD 403 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~ 403 (706)
....+ .+|...|.+++
T Consensus 217 ---------------------------------------------------------------~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 217 ---------------------------------------------------------------VSRMIQNASRRKITDLK 233 (588)
T ss_dssp ---------------------------------------------------------------CEEEEECCCSSCCCCEE
T ss_pred ---------------------------------------------------------------ceeeecccccCcEEEEE
Confidence 00012 13445555565
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE--ecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF--SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++ +.. +++++ ++.|++||..+++......+|...+..++| +|++. .+++++.+|+ ++|..+
T Consensus 234 --Fs--g~~-LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~-~La~a~edG~-klw~~d--------- 296 (588)
T 2j04_A 234 --IV--DYK-VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST-ILLMSNKTSY-KVLLED--------- 296 (588)
T ss_dssp --EE--TTE-EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE-EEEECSSCEE-EEEESS---------
T ss_pred --EE--CCE-EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC-EEEEEcCCCC-EEEeec---------
Confidence 44 444 77776 689999999988885555589999999999 99986 8999999999 999864
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.++++||+..+++. |+++++|+...+. ...+.+ ...|.+++|||||+.+|+++
T Consensus 297 -----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 -----------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp -----------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred -----------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 15699999888875 8999999975444 334443 66799999999999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=313.90 Aligned_cols=322 Identities=11% Similarity=0.043 Sum_probs=253.7
Q ss_pred CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Q 005254 58 GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT 137 (706)
Q Consensus 58 ~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~ 137 (706)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+++|...|.+++|+|+| .++.+.+|+.+... .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 3457899999999999999999999999 755554 447999999999999999 45655555543222 2
Q ss_pred EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc-----eEEEEEEecCCCEEEEEeCCCEE
Q 005254 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-----RVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
..+ .|...|.+++|+|+|+. +++++.||.|++||.++ ++..+. |.. .+.+++|+|||++|++++.||+|
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~--LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDW--MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSC--EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred eec-CCCCcEEEEEECCCCCE--EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 222 46889999999999988 99999999999999644 666666 665 49999999999999999999999
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+.++.....
T Consensus 154 kIWd~~~~~l~~~------------------------------------------------------------------- 166 (588)
T 2j04_A 154 QFFSIRKNSENTP------------------------------------------------------------------- 166 (588)
T ss_dssp EEEECCCCTTTCC-------------------------------------------------------------------
T ss_pred EEEECCCCccccc-------------------------------------------------------------------
Confidence 9999876431000
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.+
T Consensus 167 --------------------------------------------------------------------------~~---- 168 (588)
T 2j04_A 167 --------------------------------------------------------------------------EF---- 168 (588)
T ss_dssp --------------------------------------------------------------------------CC----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred ecCCcEEEEeCCCceeeEe----eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE---EEEE-eCCCcCe
Q 005254 373 TNIEQVQVYDLSSMSCSYV----LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVG-TGHMGAV 444 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v 444 (706)
-.... ..+|...|.+++ ++|++ +++++.|+.+++||+.++.. ...+ .+|...|
T Consensus 169 --------------i~l~ti~~~~~gh~~~V~sVa--wSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 169 --------------YFESSIRLSDAGSKDWVTHIV--WYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp --------------EEEEEEECSCTTCCCCEEEEE--EETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred --------------eeeeeeecccccccccEEEEE--EcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 00001 244667788887 77877 67788899999999988773 3455 4788999
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee-EEEeecCcceEEEEE--cCCCCEEEEeeCCCcEEEE
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK-AVVAAHGKDINSLAV--APNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~i~ 521 (706)
.+++|+ ++ .+++++ +++|++||+... .. ....+|...+..++| +|++..++++++||+ ++|
T Consensus 230 ~svaFs--g~-~LASa~-~~tIkLWd~~~~-----------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 230 TDLKIV--DY-KVVLTC-PGYVHKIDLKNY-----------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp CCEEEE--TT-EEEEEC-SSEEEEEETTTT-----------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred EEEEEE--CC-EEEEEe-CCeEEEEECCCC-----------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 999999 44 788877 699999998865 33 333389999999999 999999999999999 999
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
... .++++||+..+++. |+++++|+...+ .+..+.+ ...|.+++|||||+.+|+++.
T Consensus 294 ~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 294 LED----------------ELHVTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred eec----------------cEEECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 976 26699999888775 999999997544 3445554 667999999999999998864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=301.60 Aligned_cols=292 Identities=24% Similarity=0.357 Sum_probs=239.2
Q ss_pred ecCCCcc--EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 56 IEGGSDT--ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 56 l~~~~~~--i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..+|... +.+++|+ +..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.
T Consensus 87 ~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 87 APGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 3456554 4445665 45688888999999999999998888776 78999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEEEEEEecCCCEEEEEeCCCE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 211 (706)
+++.+..+.+|...|.+++|++ + ++++++.||.|++||++ .+..+..+.+|.+.|.+++|+|++++|++++.||.
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWNR--H--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEET--T--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCeEEEEecCCCCceEEEEECC--C--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 9999999999999999999954 4 49999999999999998 56677888889999999999999999999988888
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|++||+++++
T Consensus 241 v~iwd~~~~~---------------------------------------------------------------------- 250 (401)
T 4aez_A 241 VQIWDARSSI---------------------------------------------------------------------- 250 (401)
T ss_dssp EEEEETTCSS----------------------------------------------------------------------
T ss_pred EEEccCCCCC----------------------------------------------------------------------
Confidence 8888865311
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 251 -------------------------------------------------------------------------------- 250 (401)
T 4aez_A 251 -------------------------------------------------------------------------------- 250 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 451 (706)
.+..+..|...|.+++|+|
T Consensus 251 -------------------------------------------------------------~~~~~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 251 -------------------------------------------------------------PKFTKTNHNAAVKAVAWCP 269 (401)
T ss_dssp -------------------------------------------------------------EEEEECCCSSCCCEEEECT
T ss_pred -------------------------------------------------------------ccEEecCCcceEEEEEECC
Confidence 1112334667788899999
Q ss_pred CCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE--eeCCCcEEEEeCCCcc
Q 005254 452 KLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV 527 (706)
Q Consensus 452 ~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~ 527 (706)
++..++++++ .|+.|++||+.... ....+ .+...+.+++|+|+++++++ |+.||.|++||+.+++
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~----------~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGA----------RVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCC----------EEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCC----------EEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 8877888865 89999999998653 23333 46778999999999999999 4489999999999865
Q ss_pred EEE--EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe
Q 005254 528 SVV--TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 528 ~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 575 (706)
... .+.+|...|.+++|+|++++|++++.||.|++||+.+++.+....
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 444 467899999999999999999999999999999999988766543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=301.88 Aligned_cols=293 Identities=20% Similarity=0.207 Sum_probs=254.5
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
.+..+|.+++|.+ +++++++++.++.|++||+.+++ ....+.+|...+.++. +.|+++. +++++.||.|++||+
T Consensus 6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~-l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTL 81 (372)
T ss_dssp SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEE
T ss_pred ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEE--EeCCCCE-EEEEcCCCeEEEEEC
Confidence 4678899999987 77899999999999999999987 8888999999999998 8888877 899999999999999
Q ss_pred CCceEEEE--EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 429 ESRCCVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 429 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.+++.... +..|...|.+++|+|+++ ++++++.|+.|++|++...... .........|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDW------WVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTE------EEEEEECTTCCSCEEEEEECTTS
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcc------eeeeeeecccCCCeeEEEEcCCC
Confidence 98875544 367889999999999987 8999999999999999865310 01122335678899999999999
Q ss_pred CEEEEeeCCCcEEEEeC------------------CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 507 SLVCTGSQDRTACVWRL------------------PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
++|++++.||.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999995 467888889899999999999999999999999999999999999
Q ss_pred ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC--CeE--------------------------------E-
Q 005254 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT--GEC--------------------------------I- 613 (706)
Q Consensus 569 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~- 613 (706)
+++..+..|..++.+++|+|++++|+++ .|+.|++|++.+ ++. .
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccccc
Confidence 9999999999999999999999988887 899999999987 431 0
Q ss_pred -----EEe-ccCCCcEEEEEEc-CCC---CEEEEEeCCCcEEEEECCchhHH
Q 005254 614 -----ATY-DKHEDKIWALAVG-KKT---EMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 614 -----~~~-~~~~~~v~~~~~s-~~~---~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
..+ .+|.+.|++++|. ++| ++|++++.||.|++|++.+++..
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 233 3899999999966 666 99999999999999999776543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=305.51 Aligned_cols=317 Identities=15% Similarity=0.190 Sum_probs=253.4
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..|..+|++++|+|++++||+++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45689999999999999999999999999999999988 8899999999999999999999999999999999999998
Q ss_pred CeEEEE--eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---E-EEeecccceEEEEEEecCCCEEEEEe
Q 005254 134 GFCTHY--FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---V-ATLDKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 134 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
++.... +..|...|.+++|+|+++. +++++.||.|++||+..++. . .....|...|.+++|+|++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSE--EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCE--EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 875544 3679999999999998876 99999999999999988763 2 33366889999999999999999999
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.||.|++||+........... ..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~-------------~~-------------------------------------------- 184 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAP-------------TP-------------------------------------------- 184 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCC-------------BT--------------------------------------------
T ss_pred CCCCEEEEEcccccccccccc-------------cc--------------------------------------------
Confidence 999999999864321100000 00
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
.
T Consensus 185 -----------------------------------------------------------------------------~-- 185 (372)
T 1k8k_C 185 -----------------------------------------------------------------------------W-- 185 (372)
T ss_dssp -----------------------------------------------------------------------------T--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+ .....++....+..|...+.++. +.|++.. +++++.|+.|++||+.+++.+..+..|...+.++
T Consensus 186 --------~----~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 250 (372)
T 1k8k_C 186 --------G----SKMPFGELMFESSSSCGWVHGVC--FSANGSR-VAWVSHDSTVCLADADKKMAVATLASETLPLLAV 250 (372)
T ss_dssp --------B----SCCCTTCEEEECCCCSSCEEEEE--ECSSSSE-EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE
T ss_pred --------c----cccchhhheEecCCCCCeEEEEE--ECCCCCE-EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE
Confidence 0 00112334445567788888887 7788776 9999999999999999999999999999999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecC--CCCCCCc----------------------ccccce-------eEEEeecCcc
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDG--LSDDAEQ----------------------PMNLKA-------KAVVAAHGKD 496 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~----------------------~~~~~~-------~~~~~~~~~~ 496 (706)
+|+|++. +++++ .|+.|++|++.. +.-.... ...... .....+|...
T Consensus 251 ~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 251 TFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 9999986 66666 999999999987 2100000 000000 1122478999
Q ss_pred eEEEEEc-CCC---CEEEEeeCCCcEEEEeCCCcc
Q 005254 497 INSLAVA-PND---SLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 497 i~~~~~s-~~~---~~l~~~~~dg~i~i~d~~~~~ 527 (706)
|+++++. ++| .+|++++.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 9999965 677 999999999999999987653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=290.42 Aligned_cols=289 Identities=24% Similarity=0.351 Sum_probs=258.4
Q ss_pred EEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcE
Q 005254 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i 423 (706)
.....+.+|...|.+++| + ++.++++++.+|.|++||+.++.....+..|...+.++. +.|++.. +++++.||.+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-l~~~~~dg~i 83 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVC--YDSEKEL-LLFGGKDTMI 83 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEE--EETTTTE-EEEEETTSCE
T ss_pred HHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEE--ECCCCCE-EEEecCCCeE
Confidence 455677889999999999 4 778899999999999999999999999999999999998 8888887 9999999999
Q ss_pred EEEeCCCc---eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE
Q 005254 424 RLWDSESR---CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL 500 (706)
Q Consensus 424 ~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 500 (706)
++|++... +.+..+..|...|.+++|.+ . ++++++.|+.|++||.. ........|...+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQD--G-VVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETT------------EEEEEEECCSSCEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecC--C-EEEEEeCCCCEEEEcCC------------cEEEecccCCCceeEE
Confidence 99998654 56777889999999999943 3 89999999999999921 1556677899999999
Q ss_pred EEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc
Q 005254 501 AVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT 578 (706)
Q Consensus 501 ~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 578 (706)
++.| +++++++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+.+++++..+.+|.
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred EEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 9988 999999999999999999 5566777777 999999999999998 9999999999999999999999999999
Q ss_pred cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHH
Q 005254 579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREE 657 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 657 (706)
..|++++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.++.....
T Consensus 226 ~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 226 SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999999999 699999999999999999999999999999999999999998 66799999999999998765443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=299.16 Aligned_cols=231 Identities=13% Similarity=0.094 Sum_probs=182.5
Q ss_pred EEEeeCCCcEEEEeCCCceEE----EEE-----eCCCcCeEEEEEecCCCeEE-EEecCCCeEEEEEecCCCCCCCcccc
Q 005254 414 IVTGSKDNSVRLWDSESRCCV----GVG-----TGHMGAVGAVAFSKKLQNFL-VSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
+++++.|+.+++|++...... ... ..+...+.+++|+|||+.++ ++++.|++|++||+....
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-------- 168 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-------- 168 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--------
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--------
Confidence 344455666666665433211 111 12345688999999998442 355679999999998652
Q ss_pred cceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCCC---
Q 005254 484 LKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGDK--- 558 (706)
Q Consensus 484 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg--- 558 (706)
.... ..|...|.+++|+|||+++++++.+ .+.+|+..+++.... ...|...|.+++|+|+++++++++.|+
T Consensus 169 --~~~~-~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 169 --EKFE-IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp --EEEE-EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred --EEEE-eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 2233 3577889999999999999999855 567777777766543 345888999999999999999999887
Q ss_pred -cEEEEEcCCCce----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEe-ccCCCcEEEEEEcCCC
Q 005254 559 -TIKIWSISDGSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWALAVGKKT 632 (706)
Q Consensus 559 -~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~ 632 (706)
.+++|++..... ...+.+|...|++++|+|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|||||
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 688999877654 3567789999999999999999999999999999999999999885 6999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCchhHHH
Q 005254 633 EMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 633 ~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
++|++++.|++|+||+++......
T Consensus 325 ~~laS~S~D~tvrvw~ip~~~~~~ 348 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLNYANY 348 (365)
T ss_dssp CEEEEEETTSEEEEEECCTTTTC-
T ss_pred CEEEEEeCCCeEEEEEcCCCCcCc
Confidence 999999999999999997665443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=304.70 Aligned_cols=289 Identities=15% Similarity=0.240 Sum_probs=248.4
Q ss_pred EecccCceeeEeeEeCC---CCcEEEEEecCCcEEEEeCCCceeeEeeeC-----CcceEEEeeeeeecCC---CEEEEE
Q 005254 348 RLVGYNEEILDLKFLGE---EEQYLAVATNIEQVQVYDLSSMSCSYVLAG-----HSEIVLCLDTCALSSG---KILIVT 416 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~---~~~l~~ 416 (706)
...+|...|.+++|.|. ....+++++.++.|++||+.+++....+.. |...+.++. +.++. ..++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEE
Confidence 44578999999999984 566677777778999999998877666554 557799998 66663 345999
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE---ee
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---AA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---~~ 492 (706)
++.||.|++||+.+++.+..+..|...|.+++|+| ++. ++++++.||.|++||+.... ....+ ..
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~ 159 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDT----------LVAIFGGVEG 159 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTE----------EEEEECSTTS
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCe----------EEEEeccccc
Confidence 99999999999999999999999999999999999 555 99999999999999997652 33444 57
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe----------------------------ecCCcEEEEEE
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR----------------------------GHKRGIWSVEF 544 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~~~~ 544 (706)
|...|.+++|+|++++|++++.||.|++||+.+++....+. .|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 89999999999999999999999999999998775443333 39999999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCce--------------EEEEeecccCEEEEEEEeC--CCEEEEEeCCCCEEEEECC
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSC--------------LKTFEGHTSSVLRASFLTR--GAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~ 608 (706)
+ +++|++++.|+.|++||+.+++. +..+..|...|++++|+|+ +++|++++.||.|++||+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 9 77999999999999999987744 7888889999999999999 9999999999999999999
Q ss_pred CCe----EEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 609 TGE----CIATYDKH--EDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 609 ~~~----~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
+++ ....+..| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 875 44577777 79999999999999999999999999999863
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.23 Aligned_cols=481 Identities=10% Similarity=0.006 Sum_probs=346.4
Q ss_pred ceEEcCCCCEEEEeeC-----C--eEEEEEccCCeEEEeecCCCccE-------EEEEEccCCCEEEEEecc------Ce
Q 005254 24 PLVVSSDGSFIACACG-----E--SINIVDLSNASIKSTIEGGSDTI-------TALALSPDDKLLFSSGHS------RE 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-----~--~i~i~d~~~~~~~~~l~~~~~~i-------~~l~~s~~~~~l~s~~~d------~~ 83 (706)
+++|||||++||+++. + .|++||+.+++ ...+..|...+ .+++|||||+++++++.+ ..
T Consensus 57 ~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~ 135 (1045)
T 1k32_A 57 NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTC 135 (1045)
T ss_dssp EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCE
T ss_pred CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccce
Confidence 7999999999998853 2 79999998887 46788899888 999999999977777644 46
Q ss_pred EEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC------------CCcEEEEECCCCeEEEEeeCCCCcEEEEE
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA------------DRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~ 151 (706)
|.+||+.+++...... + ....++|+| | ++++++. +....+|....+.....+.+|...+.++.
T Consensus 136 l~~~~~~~g~~~~l~~-~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 136 LYRVENDGINFVPLNL-G--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp EEEEEGGGTEEEECCS-C--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred EEEEECCCCCeEEecC-C--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 8888888877644333 3 234677999 8 8888642 23456665433344555688999999999
Q ss_pred EcCCCCceEEEEEecCCeEEEEECCC-CeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 152 FHPDTDKSLLFSGSDDATVRVWDLLA-KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+++ .++++++.++.+.+|.+.. +.....+..|. .+...+|+|||+.|+.+ .++.|.+|++.... +..+....
T Consensus 211 ~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~ 284 (1045)
T 1k32_A 211 IVGH---RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGD 284 (1045)
T ss_dssp EETT---EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCC
T ss_pred EeCC---EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCc
Confidence 9986 3577788889999998653 44455565554 45677999999988887 48999999984332 22222110
Q ss_pred eeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEE
Q 005254 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAA 310 (706)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (706)
... ... ...+...+..+
T Consensus 285 ~~~-------~~~--------------------------------------------------------~~~~~~~v~~~ 301 (1045)
T 1k32_A 285 LES-------PED--------------------------------------------------------RIISIPSKFAE 301 (1045)
T ss_dssp CCB-------CCS--------------------------------------------------------EEEECGGGGEE
T ss_pred ccc-------ccc--------------------------------------------------------cccccccccee
Confidence 000 000 00011234566
Q ss_pred EEc-cCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCc-eeeEeeEeCCCCcEEEEEecCCcEE-EEeCCCce
Q 005254 311 TVL-PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQ-VYDLSSMS 387 (706)
Q Consensus 311 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~i~-~~d~~~~~ 387 (706)
.++ |+++.++... ++.+.+|+...... ..+..+.. .+..+.|+ +++.++.++.++.+. +|++.+++
T Consensus 302 ~~S~pdG~~la~~~-~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 302 DFSPLDGDLIAFVS-RGQAFIQDVSGTYV--------LKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp EEEECGGGCEEEEE-TTEEEEECTTSSBE--------EECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCC
T ss_pred eecCCCCCEEEEEE-cCEEEEEcCCCCce--------EEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCC
Confidence 677 7777666665 66677666543211 12334445 67788887 777788877788888 89998876
Q ss_pred eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----
Q 005254 388 CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---- 463 (706)
Q Consensus 388 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 463 (706)
..... ++...+..+. ++|+++. +++++.++.+++||+.+++.......|...+..++|+|+|+ +|++++.+
T Consensus 371 ~~~l~-~~~~~~~~~~--~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~ 445 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMG--VDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR-FIAYGFPLKHGE 445 (1045)
T ss_dssp EEECC-CCCCSEEEEE--ECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC-EEEEEEEECSST
T ss_pred ceEec-CCccceeeeE--ECCCCCE-EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCC-eEEEEecCcccc
Confidence 55444 7777888887 8899988 88889999999999999998888878999999999999998 56655543
Q ss_pred ------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc----------
Q 005254 464 ------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV---------- 527 (706)
Q Consensus 464 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------- 527 (706)
+.|++||+..+ ....+..+...+..++|+|||++|++++.++...+|+.....
T Consensus 446 ~~~~~~~~i~l~d~~~g-----------~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGR-----------KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 514 (1045)
T ss_dssp TCSCCEEEEEEEETTTT-----------EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEE
T ss_pred ccCCCCCeEEEEECCCC-----------cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeE
Confidence 48999998764 334455667778899999999999999987776666543221
Q ss_pred ---------------------------------EEEEEeecCCcEEEEEEccCCCEEEE-------------ecCCCcEE
Q 005254 528 ---------------------------------SVVTFRGHKRGIWSVEFSPVDQVVIT-------------ASGDKTIK 561 (706)
Q Consensus 528 ---------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~-------------~~~dg~i~ 561 (706)
.+..+..|...+..++++||++++++ ......|.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~ 594 (1045)
T 1k32_A 515 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 594 (1045)
T ss_dssp EEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEE
T ss_pred EEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEE
Confidence 12233446677899999999987875 12345788
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE 611 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 611 (706)
+||+.+++... +. ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 595 ~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 595 KYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 99998877533 32 567889999999999998876 79999998765
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=300.30 Aligned_cols=294 Identities=17% Similarity=0.278 Sum_probs=246.9
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEec---CCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCC--CEEEEEeeCC
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATN---IEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSG--KILIVTGSKD 420 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~---~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~--~~~l~~~~~d 420 (706)
....+|...|.+++|+|.+..++++++. ++.|++||+.+++.... ..+|...+.++. +.|+. ..++++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGT--FGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEE--CTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEE--EcCCCCCCceEEEecCC
Confidence 3446689999999999977778888876 89999999998876544 337888999998 77773 3349999999
Q ss_pred CcEEEEeCCCce-EEEEEeCCCcCeEEEEE------ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 421 NSVRLWDSESRC-CVGVGTGHMGAVGAVAF------SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 421 g~i~i~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
|.|++||+.+++ .+..+..|...|.++.| +|+++ +|++++.|+.|++||+..... ....+..+
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~---------~~~~~~~~ 159 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDD---------PVANMEPV 159 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSS---------CSEEECCC
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCC---------cceecccc
Confidence 999999999988 88889999999999965 56766 899999999999999986531 22233333
Q ss_pred C----cceEEEE----EcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEcc---CCCEEEEecCCCcEEE
Q 005254 494 G----KDINSLA----VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP---VDQVVITASGDKTIKI 562 (706)
Q Consensus 494 ~----~~i~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i 562 (706)
. ..+.+++ |+|+++++++++.||.|++||+.+++.... ..|...|.+++|+| ++.+|++++.||.|++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 3 3788888 788999999999999999999999887544 66899999999999 9999999999999999
Q ss_pred EEcCCCceEEEEe-----ecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCC-------------------eEEEEec
Q 005254 563 WSISDGSCLKTFE-----GHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTG-------------------ECIATYD 617 (706)
Q Consensus 563 wd~~~~~~~~~~~-----~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~ 617 (706)
||+.+++....+. +|...|++++|+|+++ +|++++.||.|++||+.++ +++..+.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9998876654444 8999999999999998 8999999999999999754 4677888
Q ss_pred cCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCchh
Q 005254 618 KHEDKIWALAVGKKTEMFA-TGGSDALVNLWHDSTAA 653 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vw~~~~~~ 653 (706)
+|...|++++|+|++++|+ +++.||.|++|++.+..
T Consensus 319 ~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 319 LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999999999999999998 89999999999998754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=315.61 Aligned_cols=347 Identities=10% Similarity=0.076 Sum_probs=238.1
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~ 133 (706)
+..+..+|++++|+|++++||+++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446789999999999999999999999999999998 78889999999999999999999999999999999999998
Q ss_pred Ce---EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe---eEEEeec-ccceEEEEEEecCCCEEEEE
Q 005254 134 GF---CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK---CVATLDK-HFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 134 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 206 (706)
++ ....+.+|...|.+++|+|+++. +++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDK--FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSC--CEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCE--EEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 87 66777889999999999998877 9999999999999999887 4677777 99999999999999999999
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
+.|+.|++||+...+........ +.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~---------~~---------------------------------------------- 189 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEAS---------VW---------------------------------------------- 189 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSC---------SS----------------------------------------------
T ss_pred eCCCEEEEEEEEecccCCCcccc---------cc----------------------------------------------
Confidence 99999999998654321110000 00
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
..
T Consensus 190 ------------------------------------------------------------------------------~~ 191 (377)
T 3dwl_C 190 ------------------------------------------------------------------------------GS 191 (377)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE----EEEEeCCCc
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC----VGVGTGHMG 442 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~ 442 (706)
.+..++....+ +|...+.++. ++|+++. +++++.||.|++||+.+++. +..+..|..
T Consensus 192 ---------------~~~~~~~~~~~-~~~~~v~~~~--~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 192 ---------------RLPFNTVCAEY-PSGGWVHAVG--FSPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp ---------------CCCEEEEEECC-CCSSSEEEEE--ECTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred ---------------ccchhhhhhcc-cCCceEEEEE--ECCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 00112223344 7788888888 8888887 99999999999999999877 777889999
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-------eecCcceEEEEEcCCCCEEEEeeCC
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-------AAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
.|.+++|+|+++ +|++++.++.+ +|+.................... ........++.|++....+......
T Consensus 253 ~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (377)
T 3dwl_C 253 PLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLK 330 (377)
T ss_dssp CEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------
T ss_pred ceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhc
Confidence 999999999987 77887766655 77665322111000000000000 0000113333333332222222111
Q ss_pred CcEEEEeCCCccEEEEEeecCCcEEEEEEccCC-C---EEEEecCCCcEEEEEc
Q 005254 516 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD-Q---VVITASGDKTIKIWSI 565 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~iwd~ 565 (706)
|... ........|...|+++++.+.. . .|++++.||.|++||+
T Consensus 331 g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 331 GSSQ-------SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccc-------cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1111 1111223599999999976643 3 6999999999999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=311.02 Aligned_cols=308 Identities=18% Similarity=0.220 Sum_probs=234.4
Q ss_pred EEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCCeE--EEEeeccCCCeEEEEECC-CCCEEEEecCCCcEE
Q 005254 52 IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTLKC--LRSWKGHDGPAIGMACHP-SGGLLATAGADRKVL 127 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~ 127 (706)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++++.|++|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455667889999999999 567999999999999999987754 445678999999999998 789999999999999
Q ss_pred EEECCCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCC-EEE
Q 005254 128 VWDVDGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 204 (706)
+||++++........ +...+.+++|+|++.. +++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRM--VVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTE--EEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCE--EEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 999987765444333 3456789999998876 9999999999999985 566778889999999999999886 677
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.|+.|++||+++.+....+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~---------------------------------------------------------- 289 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASF---------------------------------------------------------- 289 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCC----------------------------------------------------------
T ss_pred EecCcceeeEEecccccccceE----------------------------------------------------------
Confidence 8999999999998754322110
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 290 -------------------------------------------------------------------------------- 289 (435)
T 4e54_B 290 -------------------------------------------------------------------------------- 289 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA- 443 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 443 (706)
....+|...|.++. ++|++.. |++++.||.|++||+.++.....+..|...
T Consensus 290 -------------------------~~~~~h~~~v~~~~--~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 290 -------------------------LYSLPHRHPVNAAC--FSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp -------------------------SBCCBCSSCEEECC--BCTTSSE-EEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred -------------------------EEeeecccccccee--ECCCCCe-eEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 01234666777776 7788777 899999999999999988776665544321
Q ss_pred -----eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCc
Q 005254 444 -----VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRT 517 (706)
Q Consensus 444 -----v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~ 517 (706)
+....|+|++ .+..+.+++++..+++++ .++.
T Consensus 342 ~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 342 FQHLTPIKAAWHPRY------------------------------------------NLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp CSSSCCCBCEECSSS------------------------------------------SCEEEECCCCTTSCCSSTTCCCC
T ss_pred cccceeEEEEEcCCC------------------------------------------CEEEEEEcCCCCeEEEEecCCCE
Confidence 1112222222 233444555665555444 4567
Q ss_pred EEEEeCCCccEEEEEe-ecCCcEEEE-EEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 518 ACVWRLPDLVSVVTFR-GHKRGIWSV-EFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+|||+++++..
T Consensus 380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 9999999999988875 578888887 6999999999876 789999999988754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=296.54 Aligned_cols=280 Identities=21% Similarity=0.364 Sum_probs=244.1
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
..+.|++ .++|+++. |+.|++||..+++....+. +|...|++++ ++|+++. |++|+.||.|++||+.+++.+
T Consensus 109 ~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~--fspdg~~-lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 109 NLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp BCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEE
T ss_pred eeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEE--ECCCCCE-EEEEECCCeEEEEEcCCCcEE
Confidence 3466764 35777776 7999999999998876655 6777899998 8898887 999999999999999999999
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+.+|...+.++++++. ++++++.|+.+++|+..... .....+..|...+..+.++|+++++++++.
T Consensus 183 ~~~~~h~~~v~~~s~~~~---~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 183 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp EEECCCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCceEEEeeCCC---EEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecCCCCeeeeeec
Confidence 999999999999988754 89999999999999987542 245667889999999999999999999999
Q ss_pred CCcEEEEeCCCcc----EEEEEeecCCcEEEEEEccCCC-EEEE--ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 515 DRTACVWRLPDLV----SVVTFRGHKRGIWSVEFSPVDQ-VVIT--ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 515 dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
|+.+++|+..+++ .+.....|...|.+++|+|++. .+++ |+.|++|++||+.++++...+.. ...+.++.|+
T Consensus 251 D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~ 329 (420)
T 4gga_A 251 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWS 329 (420)
T ss_dssp TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEE
T ss_pred cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeec
Confidence 9999999998764 3566778999999999999664 4544 46799999999999999988874 4678999999
Q ss_pred eCCCEEEEEe--CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHH
Q 005254 588 TRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 588 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
++++.+++++ .|+.|+|||+.+++++..+.+|.+.|++++|+|||++|+||+.||+|++||+.+..+.
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred CCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 9999998765 7899999999999999999999999999999999999999999999999999765443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=283.83 Aligned_cols=249 Identities=23% Similarity=0.371 Sum_probs=215.3
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC--ceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i 466 (706)
.+.+|...|.+++ ++++++. |++|+.|+.|++||+.. .+.+..+.+|...|.+++|+++ +. +|++++.|++|
T Consensus 4 ~~~~h~~~V~~~~--~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v 79 (297)
T 2pm7_B 4 IANAHNEMIHDAV--MDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKV 79 (297)
T ss_dssp ECCSCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEE
T ss_pred eccCCcCceEEEE--ECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEE
Confidence 5678999999998 8888887 99999999999999974 4677889999999999999864 44 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCcc--EEEEEeecCCcEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLV--SVVTFRGHKRGIWSV 542 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~ 542 (706)
++||+..+. ......+..|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....+.+|...|.++
T Consensus 80 ~iWd~~~~~--------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 80 MIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp EEEEBSSSC--------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEEEcCCCc--------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 999997542 1133456678899999999997 8999999999999999998763 245678899999999
Q ss_pred EEccC-------------CCEEEEecCCCcEEEEEcCCCc----eEEEEeecccCEEEEEEEeCC---CEEEEEeCCCCE
Q 005254 543 EFSPV-------------DQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLV 602 (706)
Q Consensus 543 ~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i 602 (706)
+|+|+ +++|++++.|+.|++||+.+++ +...+.+|...|.+++|+|++ ++|++++.|++|
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v 231 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcE
Confidence 99997 5799999999999999998776 667888999999999999984 899999999999
Q ss_pred EEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 603 KLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 603 ~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
++||+.++. ....+ ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999998743 22233 47889999999999999999999999999999863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=295.30 Aligned_cols=276 Identities=18% Similarity=0.307 Sum_probs=241.3
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG 445 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 445 (706)
..+++++.++.|++||+.+++....+.. |...+.++. ++|++.. +++++.||.|++||+.+++.+..+..|...|.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~--~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 180 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVK--WSHDGSF-LSVGLGNGLVDIYDVESQTKLRTMAGHQARVG 180 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEE--ECCCCCE-EEEECCCCeEEEEECcCCeEEEEecCCCCceE
Confidence 4467778899999999999988877776 788999998 8888877 99999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+++|++. ++++++.||.|++||+.... .....+..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 181 ~~~~~~~---~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 181 CLSWNRH---VLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp EEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred EEEECCC---EEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC
Confidence 9999553 89999999999999997432 15566778999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCcEEEEEEccCCC-EEEEec--CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEE--eCCC
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS--GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC--GADG 600 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg 600 (706)
++....+..|...|.+++|+|++. ++++++ .|+.|++||+.+++++..+. +...+.+++|+|++++|+++ +.||
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCC
Confidence 999999999999999999999764 566654 79999999999999998886 67889999999999999994 4899
Q ss_pred CEEEEECCCCeEEEE--eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 601 LVKLWTVRTGECIAT--YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
.|++||+.+++.... +.+|...|.+++|+|++++|++++.||.|++|++.+++.....
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999765544 6699999999999999999999999999999999998766543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=309.44 Aligned_cols=293 Identities=15% Similarity=0.197 Sum_probs=237.9
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee--eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
...++...|.+++|.|.++.+|++|+.||.|++||+.++.. ...+.+|.+.|.++. |+|.+..+|++++.||+|++
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~--f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLK--FNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEE--ECSSCTTEEEEECSSSCEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEE--EeCCCCCEEEEEeCCCEEEE
Confidence 34567788999999998899999999999999999987654 345568999999998 88755545999999999999
Q ss_pred EeCCCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEc
Q 005254 426 WDSESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 426 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 503 (706)
||++++........ +...+.+++|+|++. +|++|+.||.|++||++.. ....+..|...|++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-----------~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-----------ELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-----------BCCCSBCCSSCEEEEEEC
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-----------eeEEEecccceEEeeeec
Confidence 99987765444433 344678899999987 8999999999999998643 334456789999999999
Q ss_pred CCCC-EEEEeeCCCcEEEEeCCCccEEE---EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 504 PNDS-LVCTGSQDRTACVWRLPDLVSVV---TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 504 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
|++. ++++++.|+.|++||+.+.+... ...+|...|++++|+|++++|++++.||.|++||+.++++...+..|..
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~ 339 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH 339 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence 9876 78899999999999998765433 3356999999999999999999999999999999999988887766543
Q ss_pred ------CEEEEEEEeCCCEEEEEe------------CCCCEEEEECCCCeEEEEec-cCCCcEEEE-EEcCCCCEEEEEe
Q 005254 580 ------SVLRASFLTRGAQIVSCG------------ADGLVKLWTVRTGECIATYD-KHEDKIWAL-AVGKKTEMFATGG 639 (706)
Q Consensus 580 ------~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~ 639 (706)
.+....|+|++.+++++. .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 233456777777766654 34579999999999988875 788889887 6999999999876
Q ss_pred CCCcEEEEECCchhHH
Q 005254 640 SDALVNLWHDSTAAER 655 (706)
Q Consensus 640 ~dg~i~vw~~~~~~~~ 655 (706)
|+.|++|++.+++.+
T Consensus 420 -d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 -GYHILIWSQQEARTR 434 (435)
T ss_dssp -SSEEEECCCC-----
T ss_pred -CCcEEEEECCcCeee
Confidence 889999999988754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=281.12 Aligned_cols=283 Identities=24% Similarity=0.359 Sum_probs=233.4
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
.++|+||+++ +||+| .|++|+|||+++++++..+. +|...|++++|+|++++||+|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999987 67765 58999999999999888775 57788999999999999999999999999999999999999
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
.+|...+.++.+.+ .. +++++.++.+++|+.... ..+..+.+|...+..+.+.++++++++++.||.|++||+++
T Consensus 106 ~~h~~~~~~~~~~~--~~--l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 106 TSHSARVGSLSWNS--YI--LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp ECCSSCEEEEEEET--TE--EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred cCccceEEEeecCC--CE--EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 99999998877764 43 999999999999998765 45667889999999999999999999999999999999875
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
++......
T Consensus 182 ~~~~~~~~------------------------------------------------------------------------ 189 (318)
T 4ggc_A 182 GEGGWVPL------------------------------------------------------------------------ 189 (318)
T ss_dssp BTTBSCCS------------------------------------------------------------------------
T ss_pred Ccccccce------------------------------------------------------------------------
Confidence 43211000
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (318)
T 4ggc_A 190 -------------------------------------------------------------------------------- 189 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeE--E
Q 005254 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNF--L 457 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l 457 (706)
.. ...+.+.|.+++++|++..+ +
T Consensus 190 ----------~~---------------------------------------------~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 190 ----------QT---------------------------------------------FTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ----------EE---------------------------------------------ECCCCSCEEEEEECTTSTTEEEE
T ss_pred ----------ee---------------------------------------------ecccCCceEEEEecCCCCcEEEE
Confidence 00 01122344445555544433 3
Q ss_pred EEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEEEEeec
Q 005254 458 VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 458 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
++++.++.|++|+.... .......+...+..+.++|+++.+++++ .|+.|++||+.+++++..+.+|
T Consensus 215 ~~~~~~~~i~lwd~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH 283 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSG-----------ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283 (318)
T ss_dssp EECTTTCEEEEEETTTC-----------CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred EecCCCCEEEEEecccc-----------cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence 46678899999998765 3344556778899999999999887755 7999999999999999999999
Q ss_pred CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 536 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
...|++++|+|++++|++++.||+|+|||+.+..
T Consensus 284 ~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp SSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999999999999999997643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=293.67 Aligned_cols=293 Identities=14% Similarity=0.154 Sum_probs=210.5
Q ss_pred CccEEEEEEccCCCEEEEEecc-------CeEEEEECCCCeE----------EEEeeccCCCeEEEEECCCCCEEEEe--
Q 005254 60 SDTITALALSPDDKLLFSSGHS-------REIRVWDLSTLKC----------LRSWKGHDGPAIGMACHPSGGLLATA-- 120 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d-------~~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~l~~~-- 120 (706)
..+|.+++|+||+++||+|+.+ +.|++|++..+.. ...+.+|...|.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4689999999999999998753 3699999875431 12456788888888765 4566665
Q ss_pred ---------cCCCcEEEEECCCCeEE----EEe-----eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 121 ---------GADRKVLVWDVDGGFCT----HYF-----KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 121 ---------~~d~~i~vw~~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
+.|+.+++|++...... ... ..+...+.+++|+|||+..++++++.|++|++||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 35788999998664321 111 234456899999999998666677789999999999999998
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
.+. |.+.|.+++|+|||+++++++.++ +++|+..+++....
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~------------------------------------- 212 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIAR------------------------------------- 212 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEE-------------------------------------
T ss_pred EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceee-------------------------------------
Confidence 885 778899999999999999988555 55665543321110
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME 342 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (706)
T Consensus 213 -------------------------------------------------------------------------------- 212 (365)
T 4h5i_A 213 -------------------------------------------------------------------------------- 212 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.....|...+.++. ++|++.. +++++.|+.
T Consensus 213 -----------------------------------------------~~~~~~~~~v~~v~--fspdg~~-l~~~s~d~~ 242 (365)
T 4h5i_A 213 -----------------------------------------------KTDFDKNWSLSKIN--FIADDTV-LIAASLKKG 242 (365)
T ss_dssp -----------------------------------------------ECCCCTTEEEEEEE--EEETTEE-EEEEEESSS
T ss_pred -----------------------------------------------eecCCCCCCEEEEE--EcCCCCE-EEEEecCCc
Confidence 01122333444444 4555544 444443331
Q ss_pred EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE
Q 005254 423 VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 502 (706)
. ...+++|++.... ........+..|...|++++|
T Consensus 243 ~---------------------------------------~~~i~~~~~~~~~------~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 243 K---------------------------------------GIVLTKISIKSGN------TSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp C---------------------------------------CEEEEEEEEETTE------EEEEEEEEEESSCSCEEEEEE
T ss_pred c---------------------------------------eeEEeecccccce------ecceeeeeecCCCCCeEeEEE
Confidence 0 0023344433221 001123345567788999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 005254 503 APNDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDG 568 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 568 (706)
+|||++||+|+.|+.|+|||+.+++++..+ .+|...|++++|+|||++||+++.|++|+|||+...
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999885 689999999999999999999999999999999643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=297.28 Aligned_cols=282 Identities=28% Similarity=0.560 Sum_probs=246.6
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
++...+.++.+ +++++++++.+|.|++||+.+++....+.+|...|.++. + +++. +++|+.||.|++||+.+
T Consensus 131 ~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~--~~~~-l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DERV-IITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSSE-EEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEE--E--CCCE-EEEEcCCCeEEEEECCC
Confidence 34456777666 788999999999999999999999999999999999987 4 4555 99999999999999999
Q ss_pred ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 431 RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
++.+..+..|...|.+++|+++ ++++++.||.|++||+..... ........+|...|.++++ ++++++
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~ 270 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDF--DDKYIV 270 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSC-------CEEEEEECCCSSCEEEEEE--ETTEEE
T ss_pred CcEEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCC-------ceeeeEecCCCCcEEEEEe--CCCEEE
Confidence 9999999999999999999854 899999999999999986532 1133567789999999999 788999
Q ss_pred EeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
+|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 271 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 271 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999999999999999999999999994 789999999999999999999999999999999999998 78
Q ss_pred CEEEEEeCCCCEEEEECCCCe---------EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHH
Q 005254 591 AQIVSCGADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEA 658 (706)
Q Consensus 591 ~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 658 (706)
++|++|+.||.|++||+.+++ ++..+.+|.+.|.+++| ++++|++++.||.|++||+.++......
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 899999999999999998776 88999999999999999 7889999999999999999887655443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=303.02 Aligned_cols=284 Identities=21% Similarity=0.214 Sum_probs=231.9
Q ss_pred cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc--eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 352 YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 352 ~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
+...|.+++|+| +++++++++.++.|++||+.++ +....+.+|...+.++. ++|+++. |++++.|+.|++||+.
T Consensus 10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~--~s~~~~~-l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVD--WAPKSNR-IVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEE--ECTTTCC-EEEEETTSSEEEC---
T ss_pred CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEE--EeCCCCE-EEEEeCCCeEEEEEcC
Confidence 567899999998 7789999999999999999988 77888999999999998 8888877 9999999999999999
Q ss_pred Cce---EEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCC
Q 005254 430 SRC---CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPN 505 (706)
Q Consensus 430 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~ 505 (706)
+++ ....+..|...|.+++|+|+++ ++++++.|+.|++||+..... ......+.. |...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECTT
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcCC
Confidence 887 6677788999999999999987 899999999999999986531 112344555 8999999999999
Q ss_pred CCEEEEeeCCCcEEEEeCC------------------CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 506 DSLVCTGSQDRTACVWRLP------------------DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 506 ~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
+++|++++.|+.|++||+. .++.+..+ +|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999985 34556666 8999999999999999999999999999999999
Q ss_pred Cce----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCe------------------------------EE
Q 005254 568 GSC----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE------------------------------CI 613 (706)
Q Consensus 568 ~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------------~~ 613 (706)
++. +..+.+|...|.+++|+|++++|++++.++.+ +|+...+. .+
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 987 78889999999999999999999998766655 67654211 00
Q ss_pred ------EEe----------------ccCCCcEEEEEEcCCC-C---EEEEEeCCCcEEEEEC
Q 005254 614 ------ATY----------------DKHEDKIWALAVGKKT-E---MFATGGSDALVNLWHD 649 (706)
Q Consensus 614 ------~~~----------------~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~vw~~ 649 (706)
..+ ..|.+.|+++.+.+++ . .|+|+|.||.|++||+
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011 1399999999976544 3 6999999999999986
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=279.29 Aligned_cols=264 Identities=17% Similarity=0.252 Sum_probs=202.5
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC--CeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCcEEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLVW 129 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~vw 129 (706)
..+.+|...|++++|+|+|++||+|+.|+.|+|||+.+ ++++..+.+|.++|.+++|+|+ +++||+++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4678899999999999999874 8999999999999999
Q ss_pred ECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEE
Q 005254 130 DVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 130 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
|+.+++ .+..+.+|...|.+++|+|+....++++++.|+.|++||++++. ....+.+|...|.+++|+|++..-
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~-- 160 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE-- 160 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc--
Confidence 998874 55677889999999999997333459999999999999998763 245678899999999999974210
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
++. ..
T Consensus 161 ---~~~--------~~---------------------------------------------------------------- 165 (297)
T 2pm7_B 161 ---DGE--------HN---------------------------------------------------------------- 165 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccc--------CC----------------------------------------------------------------
Confidence 000 00
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
.+.+
T Consensus 166 ----------------------------------------------------------------------------~~~~ 169 (297)
T 2pm7_B 166 ----------------------------------------------------------------------------GTKE 169 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 0001
Q ss_pred CcEEEEEecCCcEEEEeCCCce----eeEeeeCCcceEEEeeeeeecCC--CEEEEEeeCCCcEEEEeCCCce---EEEE
Q 005254 366 EQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVRLWDSESRC---CVGV 436 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~ 436 (706)
+.++++++.|+.|++||+.++. ....+.+|...|.+++ ++|++ ..++++++.|++|++||+.+.. ....
T Consensus 170 ~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~--~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~ 247 (297)
T 2pm7_B 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA--WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL 247 (297)
T ss_dssp CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE--ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE
T ss_pred cceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEE--ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee
Confidence 2233333333333333333222 2335677888888888 77775 4569999999999999987642 1223
Q ss_pred E--eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 437 G--TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 437 ~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+ ..|...|.+++|+|+++ +|++++.|+.|++|+...
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred eecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence 3 46788999999999987 899999999999999863
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=274.81 Aligned_cols=277 Identities=21% Similarity=0.350 Sum_probs=239.3
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
..++|++. ++|+++. |+.|++||+.+++....+. +|...|.++. +.++++. +++|+.||.|++||+.+++.+
T Consensus 29 ~~l~WS~~--~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~--~~~~~~~-l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 29 NLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVA--WIKEGNY-LAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp BCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEE
T ss_pred eEEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEE--ECCCCCE-EEEEECCCcEEEeecCCceeE
Confidence 45778753 3777765 7999999999998877665 6777899998 8888887 999999999999999999999
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
..+.+|...+.++.+.+. ++++++.++.+++|+..... ........|...+..+.++++++++++++.
T Consensus 103 ~~~~~h~~~~~~~~~~~~---~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 170 (318)
T 4ggc_A 103 RNMTSHSARVGSLSWNSY---ILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAPDGRHLASGGN 170 (318)
T ss_dssp EEEECCSSCEEEEEEETT---EEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecCccceEEEeecCCC---EEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcCCCCEEEEEec
Confidence 999999999887776654 89999999999999987542 255667889999999999999999999999
Q ss_pred CCcEEEEeCCCccE----EEEEeecCCcEEEEEEccCCCE---EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 515 DRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQV---VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 515 dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
||.|++||+.+++. ......+...|.+++++|++.. +++++.++.|++||........... +...+..+.|+
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~ 249 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWS 249 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEE
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeec
Confidence 99999999987643 4455668889999999997653 3467889999999998887776654 77889999999
Q ss_pred eCCCEEEEEe--CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 588 TRGAQIVSCG--ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 588 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
++++.+++++ .|+.|++||+.+++++..+.+|.+.|++++|+||+++|+|++.||+|++||+.+.
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999887755 7999999999999999999999999999999999999999999999999998653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=288.60 Aligned_cols=276 Identities=26% Similarity=0.484 Sum_probs=237.3
Q ss_pred ecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe
Q 005254 56 IEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 56 l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
..+|...|.|+++ ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.+++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 3456778998887 7999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE---EEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV---ATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
.+..+.+|...|.+++|++ + .+++|+.||.|++||+.+++.. ..+.+|...|.+++| +++++++++.||.|
T Consensus 205 ~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i 278 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTI 278 (435)
T ss_dssp EEEEECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred EEEEEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeE
Confidence 9999999999999999975 3 4999999999999999887755 667889999999999 77899999999999
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
++||+++++.+..+
T Consensus 279 ~vwd~~~~~~~~~~------------------------------------------------------------------ 292 (435)
T 1p22_A 279 KVWNTSTCEFVRTL------------------------------------------------------------------ 292 (435)
T ss_dssp EEEETTTCCEEEEE------------------------------------------------------------------
T ss_pred EEEECCcCcEEEEE------------------------------------------------------------------
Confidence 99999876544332
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
.++...+.++.+ ++..++++
T Consensus 293 ---------------------------------------------------------~~~~~~v~~~~~---~~~~l~~g 312 (435)
T 1p22_A 293 ---------------------------------------------------------NGHKRGIACLQY---RDRLVVSG 312 (435)
T ss_dssp ---------------------------------------------------------ECCSSCEEEEEE---ETTEEEEE
T ss_pred ---------------------------------------------------------cCCCCcEEEEEe---CCCEEEEE
Confidence 123344555555 45789999
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce---------EEEEEeCCCcC
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC---------CVGVGTGHMGA 443 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~ 443 (706)
+.++.|++||+.+++....+.+|...+.++. + ++.. +++|+.||.|++||+.++. .+..+..|.+.
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~--~--~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~ 387 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIR--F--DNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 387 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEE--C--CSSE-EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred eCCCeEEEEECCCCCEEEEEeCCcCcEEEEE--e--cCCE-EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence 9999999999999999999999999999987 4 4555 9999999999999987766 78889999999
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
|.+++| ++. ++++++.||.|++||+....
T Consensus 388 v~~l~~--~~~-~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 388 VFRLQF--DEF-QIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CCCEEE--CSS-CEEECCSSSEEEEEC-----
T ss_pred eEEEEe--CCC-EEEEEeCCCEEEEEECCCCC
Confidence 999999 444 79999999999999998653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=281.48 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=201.0
Q ss_pred EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECC--CCCEEEEecCCCcEEEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHP--SGGLLATAGADRKVLVW 129 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw 129 (706)
..+.+|...|++++|+|+|++||+|+.|+.|+|||+.++. .+..+.+|...|.+++|+| ++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4567899999999999999999999999999999998875 5678999999999999986 48999999999999999
Q ss_pred ECCCC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecccceEEEEEEecCCCEEE
Q 005254 130 DVDGG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
|++++ +....+.+|...|.+++|+|++...++++|+.|+.|++||+.++.. ...+.+|...+.+++|+|++..
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-- 164 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-- 164 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC--
Confidence 99887 4567788999999999999984445599999999999999987632 3455688899999999998520
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+.+ .+... +.
T Consensus 165 -----~~~--~~~~~---------------------~~------------------------------------------ 174 (316)
T 3bg1_A 165 -----GSL--IDHPS---------------------GQ------------------------------------------ 174 (316)
T ss_dssp -------------CC---------------------SC------------------------------------------
T ss_pred -----ccc--ccccc---------------------cc------------------------------------------
Confidence 100 00000 00
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
.+.
T Consensus 175 -----------------------------------------------------------------------------~~~ 177 (316)
T 3bg1_A 175 -----------------------------------------------------------------------------KPN 177 (316)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 001
Q ss_pred CCcEEEEEecCCcEEEEeCCCc---eeeEeeeCCcceEEEeeeeeecCC---CEEEEEeeCCCcEEEEeCCCc---e-EE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSM---SCSYVLAGHSEIVLCLDTCALSSG---KILIVTGSKDNSVRLWDSESR---C-CV 434 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~---~-~~ 434 (706)
.+.++++++.|+.|++||+... .....+.+|...|.++. ++|++ ..+|++++.|++|++|++.+. . ..
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~--~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~ 255 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA--WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP 255 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE--CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE--ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhh
Confidence 2234455555555555555432 34456778888888888 77765 245999999999999998762 1 22
Q ss_pred EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 435 GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+..|...|.+++|+|+++ +|++++.|+.|++|+..
T Consensus 256 ~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 256 KLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred hhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence 33456889999999999987 89999999999999975
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=284.01 Aligned_cols=248 Identities=23% Similarity=0.365 Sum_probs=208.2
Q ss_pred eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce--EEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCeE
Q 005254 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHTI 466 (706)
Q Consensus 391 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~i 466 (706)
.+.+|...|.+++ ++++++. |++|+.|++|++||+.++. .+..+.+|...|.+++|+++ +. +|++++.|++|
T Consensus 8 ~~~~H~~~V~~v~--~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v 83 (316)
T 3bg1_A 8 VDTSHEDMIHDAQ--MDYYGTR-LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKV 83 (316)
T ss_dssp ------CCEEEEE--ECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCE
T ss_pred ecccccCeEEEee--EcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEE
Confidence 4568999999998 8888887 9999999999999998764 46678899999999999863 44 89999999999
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCccE---EEEEeecCCcEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDLVS---VVTFRGHKRGIWS 541 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~ 541 (706)
++||+..+. ......+.+|...|.+++|+|+ +.+|++++.|+.|++||+..+.. ...+.+|...|.+
T Consensus 84 ~iWd~~~~~--------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 84 IIWREENGT--------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp EEECCSSSC--------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EEEECCCCc--------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 999987542 1134456779999999999998 88999999999999999987632 3345678999999
Q ss_pred EEEccC-----------------CCEEEEecCCCcEEEEEcCCC---ceEEEEeecccCEEEEEEEeCC----CEEEEEe
Q 005254 542 VEFSPV-----------------DQVVITASGDKTIKIWSISDG---SCLKTFEGHTSSVLRASFLTRG----AQIVSCG 597 (706)
Q Consensus 542 ~~~s~~-----------------~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~ 597 (706)
++|+|+ +++|++++.|+.|++||+... +++..+.+|...|.+++|+|++ ++|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 999997 478999999999999999755 4677888999999999999986 8999999
Q ss_pred CCCCEEEEECCCC---e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 598 ADGLVKLWTVRTG---E-CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 598 ~dg~i~iwd~~~~---~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.||+|++||+.+. + ....+..|.+.|.+++|+|++++|++++.||.|++|+..
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999999999763 1 223456789999999999999999999999999999975
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=281.15 Aligned_cols=312 Identities=15% Similarity=0.247 Sum_probs=226.5
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC----eEEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCe
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG----FCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDAT 169 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~ 169 (706)
..+.+|...|++++|+|++++||+++.||.|++||+.++ +....+.+|...|.+++|+|. ++. +++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~--l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI--IASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE--EEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE--EEEEcCCCe
Confidence 456789999999999999999999999999999999876 567778899999999999994 554 999999999
Q ss_pred EEEEECCCC---------eeEEEeecccceEEEEEEecC--CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 170 VRVWDLLAK---------KCVATLDKHFSRVTSMAITSD--GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 170 i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
|++||++++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++....+...........
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~- 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI- 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC-
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc-
Confidence 999999887 567888899999999999999 99999999999999999987664433221110000000
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 162 -------------------------------------------------------------------------------- 161 (351)
T 3f3f_A 162 -------------------------------------------------------------------------------- 161 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
....+...
T Consensus 162 ------------------------------------------------------------------------~~~~~~~~ 169 (351)
T 3f3f_A 162 ------------------------------------------------------------------------PPANHLQS 169 (351)
T ss_dssp ------------------------------------------------------------------------CCSSCSCC
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 11234445
Q ss_pred EEEeeeeeecC--CCEEEEEeeCCCcEEEEeCCCceE--EEEEeCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEe
Q 005254 399 VLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRCC--VGVGTGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 399 i~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~ 471 (706)
+.++. +.|+ ...++++++.++.+.+|+...++. +..+..|...|.+++|+|++. .++++++.||.|++||+
T Consensus 170 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 170 DFCLS--WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CEEEE--ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred eeEEE--eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 55665 5554 233488899999998888777765 666778999999999999973 58999999999999999
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe----eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccC
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG----SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~ 547 (706)
....... ..............++....+..+ .....+.+|+....+.+..+.+|...|++++|+|+
T Consensus 248 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 248 TEKLSPL----------ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp EECC-------------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCcCcc----------ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 8653211 111122222333333333333333 33445667777777888889999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEE
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTF 574 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 574 (706)
+++|++++.||.|++||+.+++....+
T Consensus 318 ~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 318 GTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999988655544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=278.85 Aligned_cols=258 Identities=19% Similarity=0.316 Sum_probs=213.2
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCc
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRK 125 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~ 125 (706)
|+.+..+.+|...|++++|+|++++||+++.||.|++||+. +++.+..+.+|...|.+++|+|+ +++|++++.|+.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 45677889999999999999999999999999999999998 66788899999999999999987 999999999999
Q ss_pred EEEEECCCCe--EEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEec-
Q 005254 126 VLVWDVDGGF--CTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITS- 198 (706)
Q Consensus 126 i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~- 198 (706)
|++||+.+++ .+..+..|...|.+++|+|+ +.. +++++.||.|++||+.++. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE--EEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9999999997 77788889999999999998 554 9999999999999998873 4456678999999999999
Q ss_pred ------------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 199 ------------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 199 ------------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
++.++++++.||.|++||+++.....
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------------------------ 196 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------------------------------------------ 196 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEE------------------------------------------
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce------------------------------------------
Confidence 57888888888888888865322110
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (379)
T 3jrp_A 197 -------------------------------------------------------------------------------- 196 (379)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC--CEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~l~~~~~dg~i~ 424 (706)
.....+.+|...+.++. ++|++ ..++++++.||.|+
T Consensus 197 ----------------------------------------~~~~~~~~h~~~v~~~~--~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 197 ----------------------------------------VLESTLEGHSDWVRDVA--WSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ----------------------------------------EEEEEECCCSSCEEEEE--ECCCCSSSEEEEEEETTSCEE
T ss_pred ----------------------------------------eeEEEEecccCcEeEEE--ECCCCCCCCeEEEEeCCCEEE
Confidence 11124456777787877 77773 45599999999999
Q ss_pred EEeCCCce---EEEE--EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 425 LWDSESRC---CVGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 425 i~d~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
+||+.++. .... ...|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEET
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCCC
Confidence 99998763 2222 234888999999999988 8899999999999999753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=277.18 Aligned_cols=302 Identities=16% Similarity=0.243 Sum_probs=219.0
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC----eEEEEeeccCCCeEEEEECC--CCCEEEEecCCCcE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL----KCLRSWKGHDGPAIGMACHP--SGGLLATAGADRKV 126 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i 126 (706)
...+.+|.+.|++++|+|++++||+++.||.|++||+.++ +.+..+.+|...|.+++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 57778899999999999999 69999999999999
Q ss_pred EEEECCCC---------eEEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCeeEEEee----------
Q 005254 127 LVWDVDGG---------FCTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKKCVATLD---------- 185 (706)
Q Consensus 127 ~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------- 185 (706)
++||+.++ +.+..+..|...|.+++|+|+ ++. +++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcE--EEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 99999887 667888899999999999998 555 9999999999999998877544332
Q ss_pred ---cccceEEEEEEecC---CCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcc
Q 005254 186 ---KHFSRVTSMAITSD---GSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKK 259 (706)
Q Consensus 186 ---~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (706)
.|...+.+++|+|+ +..+++++.++.+.+|+...+..
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------- 204 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL------------------------------------- 204 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-------------------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-------------------------------------
Confidence 57788999999997 88999999999887776543211
Q ss_pred ccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc
Q 005254 260 RRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (706)
T Consensus 205 -------------------------------------------------------------------------------- 204 (351)
T 3f3f_A 205 -------------------------------------------------------------------------------- 204 (351)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC---EEEEE
Q 005254 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK---ILIVT 416 (706)
Q Consensus 340 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~l~~ 416 (706)
.....+.+|...+.++. +.|++. .++++
T Consensus 205 -----------------------------------------------~~~~~~~~h~~~i~~~~--~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 205 -----------------------------------------------HVAAKLPGHKSLIRSIS--WAPSIGRWYQLIAT 235 (351)
T ss_dssp -----------------------------------------------EEEEECCCCCSCEEEEE--ECCCSSCSSEEEEE
T ss_pred -----------------------------------------------eeeeecCCCCcceeEEE--ECCCCCCcceEEEE
Confidence 01113445666777776 666662 45889
Q ss_pred eeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC----CCeEEEEEecCCCCCCCcccccceeEEEee
Q 005254 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS----DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492 (706)
Q Consensus 417 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 492 (706)
++.||.|++||+.++........+..........+... .+..+.. ...+.+|+.. .......+.+
T Consensus 236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 304 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD-MDAQGRSDSNTEEKAELQSNL----------QVELLSEHDD 304 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSE----------EEEEEEEECT
T ss_pred EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc-cccccccccccceeeeecccc----------cccEEEEEec
Confidence 99999999999887655444333333333334443322 2222222 2223333322 2235566778
Q ss_pred cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe
Q 005254 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 533 (706)
|...|++++|+|++++|++++.||.|++||+.+++....+.
T Consensus 305 h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 99999999999999999999999999999999876655443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=278.99 Aligned_cols=299 Identities=18% Similarity=0.242 Sum_probs=231.0
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCC---CCEEEEecCCCcEEEEECCC-CeEE-EEeeCCCCcEEEEEEcCCCCceE
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPS---GGLLATAGADRKVLVWDVDG-GFCT-HYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
.|+....+.+..+.+|...|++++|+|+ |++|++++.|+.|++||+.+ +..+ ..+.+|...|.+++|+|+++.
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-- 100 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK-- 100 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE--
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE--
Confidence 4556677888889999999999999999 59999999999999999987 5554 778899999999999998876
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeecccceEEEEEE--ecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEee
Q 005254 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAI--TSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 238 (706)
+++++.||.|++||+.+++.+. +..|...|.+++| ++++++|++++.||.|++||+++++.+..+.....
T Consensus 101 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------- 172 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER------- 172 (368)
T ss_dssp EEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC-------
T ss_pred EEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC-------
Confidence 9999999999999999998776 5579999999999 89999999999999999999987654433321110
Q ss_pred CCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCe
Q 005254 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQG 318 (706)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (368)
T 3mmy_A 173 -------------------------------------------------------------------------------- 172 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcce
Q 005254 319 LLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEI 398 (706)
Q Consensus 319 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 398 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (368)
T 3mmy_A 173 -------------------------------------------------------------------------------- 172 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEE--eCCCcCeEEEEEecCCC---eEEEEecCCCeEEEEEecC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG--TGHMGAVGAVAFSKKLQ---NFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~---~~l~~~~~d~~i~i~~~~~ 473 (706)
+.++. +. ... +++++.++.+.+|++......... ..+...+.++++.++.. ..+++++.||.|++|++..
T Consensus 173 ~~~~~--~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 173 CYCAD--VI--YPM-AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp EEEEE--EE--TTE-EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ceEEE--ec--CCe-eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 11111 11 112 455555666666666554332221 12334455555554432 2499999999999999976
Q ss_pred CCCCCCcccccceeEEEeecCc------------ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEE
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGK------------DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS 541 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 541 (706)
... ......+..|.. .|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+
T Consensus 248 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 248 PNP-------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp SCH-------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred CCc-------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence 421 113334444444 7999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcC
Q 005254 542 VEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 542 ~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
++|+|++++|++++.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 9999999999999998866555543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=274.92 Aligned_cols=282 Identities=18% Similarity=0.181 Sum_probs=239.5
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeCCcceEEEeeeeeecCCC-EEEEEeeCCCcEE
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAGHSEIVLCLDTCALSSGK-ILIVTGSKDNSVR 424 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~-~~l~~~~~dg~i~ 424 (706)
..+|.+.|.+++|.| ++.++++++.++.|++|++.++. ....+..|...+.++. +.+++. . +++++.||.|+
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~-l~~~~~dg~i~ 82 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--FIDNTDLQ-IYVGTVQGEIL 82 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEE--EEESSSEE-EEEEETTSCEE
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEE--ECCCCCcE-EEEEcCCCeEE
Confidence 346888999999998 77899999999999999998776 3455668999999998 888887 5 99999999999
Q ss_pred EEeC-CCceEEEEEeC--CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 425 LWDS-ESRCCVGVGTG--HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 425 i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
+||+ .+++. ..+.. |...|.+++|+| +. ++++++.|+.|++||+......... ........+. +...+.+++
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIA-VKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEE-EEESCSSSSS-SCCCEEEEE
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccc-ccCCeeeEEe-eCCceEEEE
Confidence 9999 77755 66777 999999999999 55 8999999999999998751100000 0000111122 678899999
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCC-cc--EEEEEeecCCcEEEEEEcc-CCCEEEEecCCCcEEEEEcCCC------ceE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPD-LV--SVVTFRGHKRGIWSVEFSP-VDQVVITASGDKTIKIWSISDG------SCL 571 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~ 571 (706)
++|++ +++++.|+.|++||+.+ +. .......|...+.+++|+| +++++++++.||.|++|++... +..
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99987 99999999999999988 54 3445556888999999999 9999999999999999999887 788
Q ss_pred EEEeeccc---------CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCC
Q 005254 572 KTFEGHTS---------SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH-EDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 572 ~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+..|.. .|.+++|+|++++|++++.||.|++||+.+++++..+.+| ...|.+++ |++++|++++.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 88888865 9999999999999999999999999999999999999998 99999999 999999999999
Q ss_pred Cc
Q 005254 642 AL 643 (706)
Q Consensus 642 g~ 643 (706)
|.
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=274.72 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=238.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe---EEEEeeccCCCeEEEEECCCCC-EEEEecCCCcEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK---CLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLV 128 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v 128 (706)
.....+|...|++++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 3455668999999999999999 9999999999999
Q ss_pred EEC-CCCeEEEEeeC--CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC---------CeeEEEeecccceEEEEEE
Q 005254 129 WDV-DGGFCTHYFKG--HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA---------KKCVATLDKHFSRVTSMAI 196 (706)
Q Consensus 129 w~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~ 196 (706)
||+ .+++. ..+.+ |...|.+++|+| ++. +++++.|+.|++||+++ ++.+..+. |...+.+++|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDK--LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTE--EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCE--EEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 999 87765 66788 999999999999 665 99999999999999987 77666665 8899999999
Q ss_pred ecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCe
Q 005254 197 TSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGI 275 (706)
Q Consensus 197 ~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (706)
++++ +++++.++.|++||+++ +.....
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------------- 186 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGT-------------------------------------------------- 186 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCE--------------------------------------------------
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccce--------------------------------------------------
Confidence 9987 99999999999999876 432110
Q ss_pred EEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCce
Q 005254 276 VRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355 (706)
Q Consensus 276 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (706)
.....+...
T Consensus 187 -----------------------------------------------------------------------~~~~~~~~~ 195 (342)
T 1yfq_A 187 -----------------------------------------------------------------------IEESGLKYQ 195 (342)
T ss_dssp -----------------------------------------------------------------------EEECSCSSC
T ss_pred -----------------------------------------------------------------------eeecCCCCc
Confidence 011123345
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCc------eeeEeeeCCcc---------eEEEeeeeeecCCCEEEEEeeCC
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSM------SCSYVLAGHSE---------IVLCLDTCALSSGKILIVTGSKD 420 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~---------~i~~~~~~~~~~~~~~l~~~~~d 420 (706)
+.+++|.|.++.++++++.+|.+++|++... +....+..|.. .+.++. ++|+++. |++++.|
T Consensus 196 i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~s~~~~~-l~~~~~d 272 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE--FSPRHKF-LYTAGSD 272 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE--ECTTTCC-EEEEETT
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE--EcCCCCE-EEEecCC
Confidence 6666776535678888888999999998876 66777777755 899988 8888887 8999999
Q ss_pred CcEEEEeCCCceEEEEEeCC-CcCeEEEEEecCCCeEEEEecCCCe-EEEEEe
Q 005254 421 NSVRLWDSESRCCVGVGTGH-MGAVGAVAFSKKLQNFLVSGSSDHT-IKVWSF 471 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~-i~i~~~ 471 (706)
|.|++||+.+++.+..+..| ...|.+++ |+++ +|++++.||. .+.+..
T Consensus 273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-EEEEEEECTHHHHCSSS
T ss_pred ceEEEEcCccHhHhhhhhcccCCCceEec--CCCC-eEEEEecCCcccccccc
Confidence 99999999999999999998 99999999 8877 8999999998 555543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=279.81 Aligned_cols=300 Identities=17% Similarity=0.251 Sum_probs=239.7
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCC-CeeE-EEeecccceEEEEEEecCCCEEE
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLA-KKCV-ATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
.|+....+.+..+.+|...|.+++|+|++ +..++++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 34556667788889999999999999983 023599999999999999987 5554 77889999999999999999999
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.||.|++||+.+++...
T Consensus 103 s~~~dg~v~iwd~~~~~~~~------------------------------------------------------------ 122 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ------------------------------------------------------------ 122 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE------------------------------------------------------------
T ss_pred EEcCCCcEEEEEcCCCCcee------------------------------------------------------------
Confidence 99999999999987543211
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (368)
T 3mmy_A 123 -------------------------------------------------------------------------------- 122 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
+..|...+.++.+...+++.. +++++.||.|++||+.+++.+..+..+. .+
T Consensus 123 ---------------------------~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 173 (368)
T 3mmy_A 123 ---------------------------IAQHDAPVKTIHWIKAPNYSC-VMTGSWDKTLKFWDTRSSNPMMVLQLPE-RC 173 (368)
T ss_dssp ---------------------------EEECSSCEEEEEEEECSSCEE-EEEEETTSEEEEECSSCSSCSEEEECSS-CE
T ss_pred ---------------------------eccccCceEEEEEEeCCCCCE-EEEccCCCcEEEEECCCCcEEEEEecCC-Cc
Confidence 112455666666323555555 9999999999999999998888887664 56
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE----EEEeeCCCcEEE
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL----VCTGSQDRTACV 520 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~i 520 (706)
.++.+.++ .+++++.++.+.+|++..... ........+...+.++.+.++... +++++.||.|++
T Consensus 174 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 174 YCADVIYP---MAVVATAERGLIVYQLENQPS--------EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEEEEETT---EEEEEEGGGCEEEEECSSSCE--------EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred eEEEecCC---eeEEEeCCCcEEEEEeccccc--------hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 66666654 688889999999999976421 011112233445666666665544 999999999999
Q ss_pred EeCCCc---cEEEEEeecCC------------cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEE
Q 005254 521 WRLPDL---VSVVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRAS 585 (706)
Q Consensus 521 ~d~~~~---~~~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 585 (706)
||+... .....+..|.. .|++++|+|++++|++++.||.|++||+.+++++..+.+|..+|.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence 999887 56677777766 799999999999999999999999999999999999999999999999
Q ss_pred EEeCCCEEEEEeCCCCEEEEEC
Q 005254 586 FLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
|+|+|++|++++.|+..+.|++
T Consensus 323 ~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 323 FNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ECTTSSCEEEEECCCSTTCGGG
T ss_pred ECCCCCeEEEEecccccccccc
Confidence 9999999999999986555443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=250.47 Aligned_cols=177 Identities=13% Similarity=0.191 Sum_probs=142.5
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCccEEEEEeecC--
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK-- 536 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 536 (706)
.|+.|++|++.... +.......|...++.++|+| ++.+|++++.|++|+|||+.+++.+.++.+|.
T Consensus 155 ~d~~V~~~~~s~dG---------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 155 SDQQVEVMTFAEDG---------GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp TTCEEEEEEECTTS---------CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred CCCcEEEEEECCCC---------ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 36666666663211 14445567888899999999 78999999999999999999999999998754
Q ss_pred -CcEEEEEEccCCCEE------------EEecCCCcEEEEEcCCCceEEEE-----eecccCEEEEEEEeCCCEEEEEeC
Q 005254 537 -RGIWSVEFSPVDQVV------------ITASGDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 537 -~~v~~~~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
..+.+++|+|+|+++ ++|+.|++|++||..+++.+..+ .+|...+.+.. .++.++++++.
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEET
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcC
Confidence 367788999999886 56788999999999999988766 35665554444 44889999999
Q ss_pred CCCEEEEECCCCeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 599 DGLVKLWTVRTGECIATYDKHEDKIW-ALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
|++|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++|++||+
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999988665 5899999999999999999999986
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=281.00 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=174.2
Q ss_pred ceEEcCCCCEEEEe-e-CCeEEEEEccCCe----EEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC----
Q 005254 24 PLVVSSDGSFIACA-C-GESINIVDLSNAS----IKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL---- 92 (706)
Q Consensus 24 ~~~~s~dg~~l~~~-~-~~~i~i~d~~~~~----~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~---- 92 (706)
.++++|+...+++. + ++.|.||++.+.. ....+.+|...|++++|+| ++++||+++.||.|++||+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 68888888766643 3 4589999986542 3456789999999999999 9999999999999999999988
Q ss_pred ---eEEEEeeccCCCeEEEEECCCC-CEEEEecCCCcEEEEECCCCeEEEEe--eCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 93 ---KCLRSWKGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFCTHYF--KGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 93 ---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
+.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ ..|...|.+++|+|+++. +++++.
T Consensus 119 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~ 196 (402)
T 2aq5_A 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL--ICTSCR 196 (402)
T ss_dssp CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--EEEEET
T ss_pred ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--EEEEec
Confidence 6788899999999999999998 69999999999999999999999999 789999999999998877 999999
Q ss_pred CCeEEEEECCCCeeEEEe-ecccce-EEEEEEecCCCEEEEE---eCCCEEEEEeCCCC
Q 005254 167 DATVRVWDLLAKKCVATL-DKHFSR-VTSMAITSDGSTLISA---GRDKVVNLWDLRDY 220 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~~w~~~~~ 220 (706)
||.|++||+++++.+..+ ..|.+. +.++.|+|++++|+++ +.|+.|++||+++.
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 999999999999999888 788776 8999999999999998 68999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=276.92 Aligned_cols=253 Identities=24% Similarity=0.372 Sum_probs=219.8
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEeCCCcCeEEEEEecC--CCeEEEEecC
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSS 462 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~ 462 (706)
+....+.+|...|.+++ ++++++. +++++.||.|++||+. +++.+..+..|...|.+++|+++ +. +|++++.
T Consensus 2 ~~~~~~~~h~~~v~~~~--~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~ 77 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSY 77 (379)
T ss_dssp ---CCEEECCCCEEEEE--ECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEET
T ss_pred CccEEecCCcccEEEEE--EcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC-EEEEecc
Confidence 34557889999999998 8888887 9999999999999998 66777888999999999999876 55 8999999
Q ss_pred CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCc
Q 005254 463 DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRG 538 (706)
Q Consensus 463 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~ 538 (706)
||.|++||+.... .........|...|.+++|+|+ +.+|++++.||.|++||+.+. .....+..|...
T Consensus 78 dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 78 DGKVLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp TSCEEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred CCEEEEEEcCCCc--------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 9999999998642 2244556678899999999999 999999999999999999887 345567789999
Q ss_pred EEEEEEcc-------------CCCEEEEecCCCcEEEEEcCCCc----eEEEEeecccCEEEEEEEeC---CCEEEEEeC
Q 005254 539 IWSVEFSP-------------VDQVVITASGDKTIKIWSISDGS----CLKTFEGHTSSVLRASFLTR---GAQIVSCGA 598 (706)
Q Consensus 539 v~~~~~s~-------------~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~ 598 (706)
|.+++|+| ++.+|++++.||.|++||+.++. ....+.+|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 99999999 69999999999999999998764 45677789999999999999 899999999
Q ss_pred CCCEEEEECCCCe---EEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 599 DGLVKLWTVRTGE---CIATY--DKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 599 dg~i~iwd~~~~~---~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
||.|++||+.+++ ....+ ..|...|++++|+|++++|++++.||.|++|++..
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9999999999874 22223 35889999999999999999999999999999984
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=284.44 Aligned_cols=282 Identities=14% Similarity=0.241 Sum_probs=233.4
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeCCc------------ceEEEeeeeee
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAGHS------------EIVLCLDTCAL 407 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~~~------------~~i~~~~~~~~ 407 (706)
.+.+.|.+++|+| ++.+|++++.+|.|++|++.++. ....+.+|. ..|.++. +.
T Consensus 26 ~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~--~~ 102 (447)
T 3dw8_B 26 AEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR--WL 102 (447)
T ss_dssp CGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE--EC
T ss_pred cccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE--Ec
Confidence 4568899999997 78999999999999999999876 477888998 7899998 77
Q ss_pred cCCC-EEEEEeeCCCcEEEEeCCCceEE---------------------------------------EE-EeCCCcCeEE
Q 005254 408 SSGK-ILIVTGSKDNSVRLWDSESRCCV---------------------------------------GV-GTGHMGAVGA 446 (706)
Q Consensus 408 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~ 446 (706)
|++. ..+++++.|+.|++||+.++... .. ...|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8762 34899999999999998765432 12 3579999999
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE-------EEeecCcceEEEEEcCCC-CEEEEeeCCCcE
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-------VVAAHGKDINSLAVAPND-SLVCTGSQDRTA 518 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i 518 (706)
++|+|+++ +++++ .|+.|++||+..... ... .+..|...|.+++|+|++ ++|++++.||.|
T Consensus 183 ~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 183 ISINSDYE-TYLSA-DDLRINLWHLEITDR---------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp EEECTTSS-EEEEE-CSSEEEEEETTEEEE---------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred EEEcCCCC-EEEEe-CCCeEEEEECCCCCc---------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 99999987 78888 799999999873210 111 244688899999999998 999999999999
Q ss_pred EEEeCCCccE----EEEEeecCC------------cEEEEEEccCCCEEEEecCCCcEEEEEcCC-CceEEEEeecccC-
Q 005254 519 CVWRLPDLVS----VVTFRGHKR------------GIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSS- 580 (706)
Q Consensus 519 ~i~d~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~- 580 (706)
++||+.+++. ...+..|.. .|.+++|+|++++|++++. +.|++||+.+ ++++..+.+|...
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999999886 788888876 8999999999999999999 9999999997 8888888888642
Q ss_pred --------------EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec-----------------------------
Q 005254 581 --------------VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD----------------------------- 617 (706)
Q Consensus 581 --------------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------- 617 (706)
+..++|+|++++|++++.||.|++||+.+++.+. +.
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEIS 409 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccc
Confidence 3348999999999999999999999999988763 22
Q ss_pred ----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 618 ----KHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 618 ----~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.+...|..++|+|++++|++++.++ +.+|.-
T Consensus 410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 410 VDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp GGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998776 777764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=284.63 Aligned_cols=280 Identities=18% Similarity=0.228 Sum_probs=234.6
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCce----eeEeeeCCcceEEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCc--
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMS----CSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWDSESR-- 431 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-- 431 (706)
+++.+....++++++.+|.|++|++.... ....+.+|...|.++. ++| ++.. +++++.||.|++||+.++
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~-l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNV-IASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTE-EEEEETTSEEEEEECCTTCC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCE-EEEEeCCCeEEEEEccCCCC
Confidence 45555444455567889999999996642 3445778999999998 888 5555 999999999999999987
Q ss_pred -----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcC
Q 005254 432 -----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAP 504 (706)
Q Consensus 432 -----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~ 504 (706)
+.+..+.+|...|.+++|+|+++.++++++.|+.|++||+.... ....+ ..|...|.+++|+|
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----------AVLTLGPDVHPDTIYSVDWSR 186 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----------EEEEECTTTCCSCEEEEEECT
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----------ccEEEecCCCCCceEEEEECC
Confidence 66788899999999999999986699999999999999998652 44455 67899999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEE-eecCCc-EEEEEEccCCCEEEEe---cCCCcEEEEEcCCCce-EEEEe-ec
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTF-RGHKRG-IWSVEFSPVDQVVITA---SGDKTIKIWSISDGSC-LKTFE-GH 577 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~-~~ 577 (706)
++++|++++.||.|++||+++++.+..+ ..|... +.+++|+|++++|+++ +.|+.|++||+.+++. +.... .|
T Consensus 187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 9999999999999999999999999988 678776 8999999999999999 7999999999988764 33332 46
Q ss_pred ccCEEEEEEEeCCCEEEE-EeCCCCEEEEECCCCeE-EEEecc--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 578 TSSVLRASFLTRGAQIVS-CGADGLVKLWTVRTGEC-IATYDK--HEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
...+.+++|+|++++|++ ++.||.|++||+.++++ +..+.. |...|.+++|+|++.++++ .|+.+++|++.++.
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 778999999999999975 55799999999998873 444443 5689999999999998774 56799999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=280.96 Aligned_cols=282 Identities=16% Similarity=0.255 Sum_probs=225.6
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCe-----------EEEeecCCC------------ccEEEEEEccCC--CEEE
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNAS-----------IKSTIEGGS------------DTITALALSPDD--KLLF 76 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~-----------~~~~l~~~~------------~~i~~l~~s~~~--~~l~ 76 (706)
.+++|+|||++||+++.+ .|+|||+.+++ ....+.+|. ..|++++|+|++ .+|+
T Consensus 32 ~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 379999999999999876 89999998877 578899998 889999999998 8999
Q ss_pred EEeccCeEEEEECCCCeEE---------------------------------------EE-eeccCCCeEEEEECCCCCE
Q 005254 77 SSGHSREIRVWDLSTLKCL---------------------------------------RS-WKGHDGPAIGMACHPSGGL 116 (706)
Q Consensus 77 s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~s~~~~~ 116 (706)
+++.|+.|++||+.++... .. ..+|...|.+++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 9999999999999775442 12 3679999999999999999
Q ss_pred EEEecCCCcEEEEECCC-CeEEE-------EeeCCCCcEEEEEEcCCC-CceEEEEEecCCeEEEEECCCCee----EEE
Q 005254 117 LATAGADRKVLVWDVDG-GFCTH-------YFKGHKGVVSSILFHPDT-DKSLLFSGSDDATVRVWDLLAKKC----VAT 183 (706)
Q Consensus 117 l~~~~~d~~i~vw~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~----~~~ 183 (706)
|+++ .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++ .. +++|+.||.|++||+++++. +..
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT--FVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE--EEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE--EEEEeCCCeEEEEECcCCccccceeeE
Confidence 9998 799999999984 44444 256899999999999987 54 99999999999999999886 778
Q ss_pred eecccc------------eEEEEEEecCCCEEEEEeCCCEEEEEeCCC-CcceeeecCcceee----------------e
Q 005254 184 LDKHFS------------RVTSMAITSDGSTLISAGRDKVVNLWDLRD-YSCKLTVPTYEMVE----------------A 234 (706)
Q Consensus 184 ~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~-~~~~~~~~~~~~~~----------------~ 234 (706)
+..|.. .|.+++|+|++++|++++. +.|++||++. ++.+..+..+..+. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 347 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFE 347 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCC
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceE
Confidence 888876 8999999999999999998 9999999997 77776666554322 2
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccc-------------------
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVT------------------- 295 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------- 295 (706)
+++++++. .+++++.||.|++||+.++...........
T Consensus 348 ~~~s~~~~-----------------------~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (447)
T 3dw8_B 348 CCWNGSDS-----------------------VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK 404 (447)
T ss_dssp EEECTTSS-----------------------EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred EEECCCCC-----------------------EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence 66777665 789999999999999999865432221110
Q ss_pred ---cccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 296 ---ISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
...........+..++++|+++.+++++.++ +++|.
T Consensus 405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 0001112345678899999999988887765 66664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=260.62 Aligned_cols=337 Identities=14% Similarity=0.112 Sum_probs=261.6
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 467888899999999999999999888665 5899999999775 34677799999999999999998887665 89999
Q ss_pred EEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|++++|++++ .++.|++||+.+++....+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~----------------------------------------------- 112 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV----------------------------------------------- 112 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-----------------------------------------------
Confidence 9999999886655 5689999998765432211
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 113 -------------------------------------------------------------------------------- 112 (391)
T 1l0q_A 113 -------------------------------------------------------------------------------- 112 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
..+ ..+.++. +.++++.++++++.++.|++||+.+++.
T Consensus 113 ---------------------------------------~~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 113 ---------------------------------------KTG-KSPLGLA--LSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp ---------------------------------------ECS-SSEEEEE--ECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ---------------------------------------eCC-CCcceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 111 1234444 7788888668888999999999999998
Q ss_pred EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee
Q 005254 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513 (706)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 513 (706)
+..+..+ ..+..++|+|+++.++++++.++.|++||+... .......+...+.+++|+|+++++++++
T Consensus 151 ~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 151 INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----------SVIDTVKVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----------eEEEEEecCCCccceEECCCCCEEEEEe
Confidence 8887765 456999999999866688899999999999765 2222334566789999999999999888
Q ss_pred ---CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEE-------
Q 005254 514 ---QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVL------- 582 (706)
Q Consensus 514 ---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~------- 582 (706)
.++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..|..+..
T Consensus 219 ~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGS 297 (391)
T ss_dssp ECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEE
T ss_pred cCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeec
Confidence 68999999999999888888765 57899999999987 6778899999999999999988876654321
Q ss_pred --------EEEEEeCC----------CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE---eCC
Q 005254 583 --------RASFLTRG----------AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG---GSD 641 (706)
Q Consensus 583 --------~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~d 641 (706)
...|+.+. ..+...+.|...++||+.+|... .+..+ ...|+++|.|.++. ..|
T Consensus 298 ~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~~~~~~~ 371 (391)
T 1l0q_A 298 IPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRLTVSNSN 371 (391)
T ss_dssp CSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEEEEEETT
T ss_pred ccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEEEEECCC
Confidence 11233322 23556667889999999888742 22333 36789999987753 355
Q ss_pred C
Q 005254 642 A 642 (706)
Q Consensus 642 g 642 (706)
|
T Consensus 372 g 372 (391)
T 1l0q_A 372 G 372 (391)
T ss_dssp E
T ss_pred C
Confidence 5
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=278.21 Aligned_cols=261 Identities=19% Similarity=0.336 Sum_probs=227.0
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----------ceEEEEEeCCCcCeEEEEEecCCCeEEEE
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----------RCCVGVGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.....|.+.|.++. +.|++..++++++.+|.|++|++.+ ...+..+..|...+.+++|+|++..+|++
T Consensus 122 ~~~~~h~~~v~~l~--~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRAR--YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEEE--EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEEE--ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 34567888999998 8887666799999999999999986 57778888999999999999998779999
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCc---cEEEEEeec
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDL---VSVVTFRGH 535 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~ 535 (706)
++.||.|++|++....... ...........|...|.+++|+| ++.++++++.||.|++||++++ +.+..+..|
T Consensus 200 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp ECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 9999999999998642111 11122455668999999999999 7789999999999999999987 577788899
Q ss_pred CCcEEEEEEccCCC-EEEEecCCCcEEEEEcCC-CceEEEEeecccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCC---
Q 005254 536 KRGIWSVEFSPVDQ-VVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRT--- 609 (706)
Q Consensus 536 ~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--- 609 (706)
...|++++|+|++. +|++++.||.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.||.|++||+..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 99999999999987 689999999999999988 567888999999999999999985 699999999999999987
Q ss_pred -----------CeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCchhHH
Q 005254 610 -----------GECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 610 -----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.+.+..+.+|...|.+++|+|+++ +|++++.||.|++|++......
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 467888889999999999999999 8999999999999999876544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=267.47 Aligned_cols=230 Identities=14% Similarity=0.167 Sum_probs=181.4
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+..+.++++++.|+.|++||..+++.+..+. +...|.+++++++ .++++ .++.|++||+.....
T Consensus 66 ~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~--------- 131 (355)
T 3vu4_A 66 MLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWK--------- 131 (355)
T ss_dssp ECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCC---------
T ss_pred EcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCce---------
Confidence 445566656788889999999999999998887 6679999999987 23333 478999999986511
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEE--eeCCCcEEEEeCCCcc---------------E-EEEEeecCCcEEEEEEccC
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCT--GSQDRTACVWRLPDLV---------------S-VVTFRGHKRGIWSVEFSPV 547 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~~~~s~~ 547 (706)
....+.. +...+++++ .++++ |+.||.|++||+.++. + +..+.+|..+|++++|+|+
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 1111111 234456666 56665 6899999999998765 2 6778999999999999999
Q ss_pred CCEEEEecCCCc-EEEEEcCCCceEEEEe-e-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEe------
Q 005254 548 DQVVITASGDKT-IKIWSISDGSCLKTFE-G-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATY------ 616 (706)
Q Consensus 548 ~~~l~~~~~dg~-i~iwd~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~------ 616 (706)
+++|++++.|++ |++||+.+++++..+. + |...|.+++|+|++++|++++.|+.|++||+.++.. ...+
T Consensus 207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 207 SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 999999999998 9999999999999998 5 999999999999999999999999999999976531 1111
Q ss_pred --------------c-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhH
Q 005254 617 --------------D-KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 617 --------------~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 654 (706)
. .+......++|++|+++|++++.||.+.+|++..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred cccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0 1122346789999999999999999999999876553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=276.33 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=179.5
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCe---EEEeecC-----------------------------------------
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNAS---IKSTIEG----------------------------------------- 58 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~---~~~~l~~----------------------------------------- 58 (706)
.+++|+|||++|+++.++.|.+||+.+++ .+..+..
T Consensus 8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 45999999999999999999999999998 6555543
Q ss_pred -------------CCccEEEEEEccCCCEE-EEEeccCeEEEEECC--CCeEEEEee--ccCCCeEEEEECCCCCEEEEe
Q 005254 59 -------------GSDTITALALSPDDKLL-FSSGHSREIRVWDLS--TLKCLRSWK--GHDGPAIGMACHPSGGLLATA 120 (706)
Q Consensus 59 -------------~~~~i~~l~~s~~~~~l-~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 120 (706)
|...|++++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 33379999999999996 889999999999999 888888886 567899999999999999999
Q ss_pred cCCCcEEEEECCCCeEEE----EeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCeeEEE-eecccceEEEE
Q 005254 121 GADRKVLVWDVDGGFCTH----YFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKKCVAT-LDKHFSRVTSM 194 (706)
Q Consensus 121 ~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~ 194 (706)
+.++.|++|++.+++... .+.+|...|.+++|+|+ ....++++++.|+.|++||+.+++.+.. +.+|.+.|.++
T Consensus 168 ~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEE
T ss_pred eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEE
Confidence 999999999998877554 77789999999999998 1133499999999999999999988877 56899999999
Q ss_pred EEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 195 AITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 195 ~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+|+ ++++|++++.|+.|++||+.+++.+..+..
T Consensus 248 ~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 248 CCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp EEC-STTEEEEEESSSEEEEEETTTCCEEEEEEC
T ss_pred EEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecc
Confidence 999 999999999999999999998876665543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=266.89 Aligned_cols=240 Identities=9% Similarity=0.044 Sum_probs=201.7
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|...+.++. +.+++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.++++++.++.|++||+..
T Consensus 167 ~~~~~v~~~~--~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 167 KKLGFVETIS--IPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TTCCEEEEEE--EGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccCCceeEEE--EcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 4556666765 545444 5899999999999999999999999899999999999999986667777899999999875
Q ss_pred CCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--------CCCcEEEEeCCCccEEEEEeecCCcEEEEEEc
Q 005254 474 LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--------QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFS 545 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s 545 (706)
.. ..... .....+.+++++|+++++++++ .||.|++||+.+++....+ .|...+.+++|+
T Consensus 244 ~~----------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~ 311 (433)
T 3bws_A 244 KL----------EIRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG 311 (433)
T ss_dssp TE----------EEEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEEC
T ss_pred Cc----------EEEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEEC
Confidence 42 22222 2345689999999999999888 5889999999998777665 456689999999
Q ss_pred cCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC---------------CCCEEEEECCC
Q 005254 546 PVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---------------DGLVKLWTVRT 609 (706)
Q Consensus 546 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~ 609 (706)
|+++.+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+
T Consensus 312 ~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 312 NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 999755 666899999999999998888876 7788999999999999988877 57999999999
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 005254 610 GECIATYDKHEDKIWALAVGKKTEMFATGGS-DALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~ 650 (706)
++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++
T Consensus 391 ~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 391 DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 999988876 457899999999999998875 9999999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=263.58 Aligned_cols=321 Identities=12% Similarity=0.117 Sum_probs=246.5
Q ss_pred ccEEEEE---EccCCCEEEEE--------------eccC--eEEEEECCCC--eEEEEeeccCCCeEEEEECCCCCEEEE
Q 005254 61 DTITALA---LSPDDKLLFSS--------------GHSR--EIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLAT 119 (706)
Q Consensus 61 ~~i~~l~---~s~~~~~l~s~--------------~~d~--~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~ 119 (706)
..+..++ |+|+++.++.. +.++ .|..||.+++ +.+..+..+ ..+.+++|+|++.++++
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEE
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEE
Confidence 4556666 77766655543 2333 4444555445 666677655 45569999998888888
Q ss_pred ecCCCcEEEEECCCCeEEE-----EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 120 AGADRKVLVWDVDGGFCTH-----YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 120 ~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
++.++.|++||+.+++... .+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+..|...+.++
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 8889999999999998887 4457899999999998765 48999999999999999999999998899999999
Q ss_pred EEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|+++.+++++ .++.|++||+++++....+...
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------------------------------------------- 253 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-------------------------------------------- 253 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--------------------------------------------
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--------------------------------------------
Confidence 9999999886555 7899999998765433222111
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 254 -------------------------------------------------------------------------------- 253 (433)
T 3bws_A 254 -------------------------------------------------------------------------------- 253 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEee--------CCCcEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS--------KDNSVRL 425 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--------~dg~i~i 425 (706)
..+.++. +.|+++. +++++ .|+.|++
T Consensus 254 -------------------------------------------~~~~~~~--~~~~g~~-l~~~~~~~~~~~~~dg~i~~ 287 (433)
T 3bws_A 254 -------------------------------------------GLPRGLL--LSKDGKE-LYIAQFSASNQESGGGRLGI 287 (433)
T ss_dssp -------------------------------------------SEEEEEE--ECTTSSE-EEEEEEESCTTCSCCEEEEE
T ss_pred -------------------------------------------CCceEEE--EcCCCCE-EEEEECCCCccccCCCeEEE
Confidence 1122233 4555555 33333 5788999
Q ss_pred EeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
||+.+++.+... .+...+.+++|+|+++.++++++.++.|++||+.... ... ...+...+.+++|+|+
T Consensus 288 ~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----------~~~-~~~~~~~~~~~~~s~d 355 (433)
T 3bws_A 288 YSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----------VQK-SIPVFDKPNTIALSPD 355 (433)
T ss_dssp EETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----------EEE-EEECSSSEEEEEECTT
T ss_pred EECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----------EEE-EecCCCCCCeEEEcCC
Confidence 999888776665 3456888999999998778888999999999997542 222 2346778999999999
Q ss_pred CCEEEEeeC---------------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCC
Q 005254 506 DSLVCTGSQ---------------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG-DKTIKIWSISD 567 (706)
Q Consensus 506 ~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 567 (706)
++++++++. ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|+++.
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999988876 57999999999998888876 567899999999999988765 99999999863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=259.90 Aligned_cols=313 Identities=12% Similarity=0.105 Sum_probs=221.0
Q ss_pred EEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE-EecC
Q 005254 44 IVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA-TAGA 122 (706)
Q Consensus 44 i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~ 122 (706)
||++.+.+.+..+.+|...|++++|+|||++||+|+.++ ++|||+.+++....... ..+..+++.+++++++ +++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 567777777778899999999999999999999998775 78999998887765543 3578889999988884 5677
Q ss_pred CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC-eeEEEeecccceEEEEEEecCCC
Q 005254 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK-KCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 123 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
|++|++||..+++.+..+. +...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~ 148 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G 148 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--c
Confidence 8999999999999999887 77799999999852 3333 4789999999988 66666554 444556666 4
Q ss_pred EEEE--EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEE
Q 005254 202 TLIS--AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279 (706)
Q Consensus 202 ~l~~--~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 279 (706)
++++ ++.+|.|++||+.++........
T Consensus 149 ~la~~sg~~~g~v~iwd~~~~~~~~~~~~--------------------------------------------------- 177 (355)
T 3vu4_A 149 LLVYSNEFNLGQIHITKLQSSGSATTQDQ--------------------------------------------------- 177 (355)
T ss_dssp EEEEEESSCTTCEEEEECCC------------------------------------------------------------
T ss_pred EEEEeCCCcCcEEEEEECCCCCccccccc---------------------------------------------------
Confidence 5655 57788899998875432110000
Q ss_pred ECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEe
Q 005254 280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDL 359 (706)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 359 (706)
T Consensus 178 -------------------------------------------------------------------------------- 177 (355)
T 3vu4_A 178 -------------------------------------------------------------------------------- 177 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc-EEEEeCCCceEEEEE
Q 005254 360 KFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS-VRLWDSESRCCVGVG 437 (706)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~ 437 (706)
. . +...... ...+.+|...|.+++ ++|++.. +++++.|++ |++||+.+++.+..+
T Consensus 178 -----~------------~---~~~~~~p~~~~~~~h~~~v~~~~--~s~~g~~-l~s~s~d~~~v~iwd~~~~~~~~~~ 234 (355)
T 3vu4_A 178 -----G------------V---QQKAILGKGVLIKAHTNPIKMVR--LNRKSDM-VATCSQDGTIIRVFKTEDGVLVREF 234 (355)
T ss_dssp -----------------------------CCEEECCCSSCEEEEE--ECTTSSE-EEEEETTCSEEEEEETTTCCEEEEE
T ss_pred -----c------------c---cccccCcccEEEEccCCceEEEE--ECCCCCE-EEEEeCCCCEEEEEECCCCcEEEEE
Confidence 0 0 0000112 346778999999998 8888877 999999998 999999999999998
Q ss_pred e-C-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc-------------ceeEEEeecCcceEEEEE
Q 005254 438 T-G-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL-------------KAKAVVAAHGKDINSLAV 502 (706)
Q Consensus 438 ~-~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~ 502 (706)
. + |...|.+++|+|+++ +|++++.|++|++||+............. ...............++|
T Consensus 235 ~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp ECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 8 5 999999999999987 89999999999999997653221111000 000011112233477999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCC
Q 005254 503 APNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 503 s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
+++++++++++.||.+++|++..
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEEc
Confidence 99999999999999999998754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=241.00 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=141.1
Q ss_pred CCCcEEEEeC-CCceEEEEEeCCCcCeEEEEEec---CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC
Q 005254 419 KDNSVRLWDS-ESRCCVGVGTGHMGAVGAVAFSK---KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG 494 (706)
Q Consensus 419 ~dg~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (706)
.|+.|++|++ .+++.+..+..|...++.++|++ ++. +|++++.|++|++||+.+++ ....+.+|.
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk----------~l~tL~g~~ 223 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQ----------LLKKMHIDD 223 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCC----------EEEEEECCC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCc----------EEEEEcCCC
Confidence 4777778877 44777777788899999999998 445 99999999999999998764 455555443
Q ss_pred ---cceEEEEEcCCCCEE------------EEeeCCCcEEEEeCCCccEEEEE-----eecCCcEEEEEEccCCCEEEEe
Q 005254 495 ---KDINSLAVAPNDSLV------------CTGSQDRTACVWRLPDLVSVVTF-----RGHKRGIWSVEFSPVDQVVITA 554 (706)
Q Consensus 495 ---~~i~~~~~s~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~ 554 (706)
..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.+++++
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 367788999999887 56788999999999999887765 3566665544444 8899999
Q ss_pred cCCCcEEEEEcCCCceEEEEeecccCEE-EEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 555 SGDKTIKIWSISDGSCLKTFEGHTSSVL-RASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 555 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
+.|++|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999999887655 5899999999999999999999995
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=268.80 Aligned_cols=286 Identities=12% Similarity=0.121 Sum_probs=233.7
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce---eeEeeeC------------------------------------
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS---CSYVLAG------------------------------------ 394 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~---~~~~~~~------------------------------------ 394 (706)
.++.+++|++ ++++++++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4567778777 45555555 56899999998887 5444442
Q ss_pred ------------------CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEe--CCCcCeEEEEEecC
Q 005254 395 ------------------HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGT--GHMGAVGAVAFSKK 452 (706)
Q Consensus 395 ------------------~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~ 452 (706)
|...|.+++ ++|+++.++++++.||.|++||+. +++.+..+. .+...|.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLR--LTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -----------------CCCCCEEEEE--ECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred cccccCccccCCCCCCCccCCceEEEE--EcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 223688888 889999866999999999999999 888887776 56789999999999
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC---CCEEEEeeCCCcEEEEeCCCccEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVCTGSQDRTACVWRLPDLVSV 529 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~~ 529 (706)
++ +|++++.+|.+++|++........ ....+.+|...|++++|+|+ +++|++++.|+.|++||+.+++.+
T Consensus 161 ~~-~l~~~~~~g~v~~~~~~~~~~~~~------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 161 DT-TVIIADKFGDVYSIDINSIPEEKF------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp SS-EEEEEETTSEEEEEETTSCCCSSC------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred CC-EEEEEeCCCcEEEEecCCcccccc------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 87 899999999999999876542110 12244578899999999999 999999999999999999999888
Q ss_pred EE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec-------------------------ccCEEE
Q 005254 530 VT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH-------------------------TSSVLR 583 (706)
Q Consensus 530 ~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~i~~ 583 (706)
.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++++..+..+ ...+..
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 77 55899999999999 9999999999999999999999998888633 356899
Q ss_pred EEEEeCCCEEEEEe-CCCCEEEEEC--CCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeC------CCcEEEEECCc
Q 005254 584 ASFLTRGAQIVSCG-ADGLVKLWTV--RTG---ECIATYDKHEDKIWALAVGKKTEMFATGGS------DALVNLWHDST 651 (706)
Q Consensus 584 ~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~vw~~~~ 651 (706)
++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++.++++++. +..|.+|.+..
T Consensus 313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999999999 8999999999 666 778888888 88999999996533333332 55688988754
Q ss_pred h
Q 005254 652 A 652 (706)
Q Consensus 652 ~ 652 (706)
.
T Consensus 392 ~ 392 (450)
T 2vdu_B 392 N 392 (450)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.85 Aligned_cols=253 Identities=20% Similarity=0.368 Sum_probs=211.6
Q ss_pred EeecCCCccEEEEEEccC-CCEEEEEeccCeEEEEECCC----------CeEEEEeeccCCCeEEEEECCCCC-EEEEec
Q 005254 54 STIEGGSDTITALALSPD-DKLLFSSGHSREIRVWDLST----------LKCLRSWKGHDGPAIGMACHPSGG-LLATAG 121 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~ 121 (706)
....+|...|++++|+|+ +.+||+++.+|.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999987 678888999999999999999998 999999
Q ss_pred CCCcEEEEECCCCeE-------EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC---eeEEEeecccceE
Q 005254 122 ADRKVLVWDVDGGFC-------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK---KCVATLDKHFSRV 191 (706)
Q Consensus 122 ~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v 191 (706)
.||.|++|++.++.. ...+.+|...|.+++|+|++. .++++++.||.|++||++++ +.+..+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987422 455678999999999999533 35889999999999999987 5777788999999
Q ss_pred EEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEe
Q 005254 192 TSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270 (706)
Q Consensus 192 ~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (706)
.+++|+|+++ ++++++.||.|++||+++...
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------------------------------------------ 312 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKL------------------------------------------------ 312 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------------------------------------------
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------------------------------------------
Confidence 9999999987 688999999999999875221
Q ss_pred cCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEec
Q 005254 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350 (706)
Q Consensus 271 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (706)
T Consensus 313 -------------------------------------------------------------------------------- 312 (430)
T 2xyi_A 313 -------------------------------------------------------------------------------- 312 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 351 ~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
....+..|...+.++. ++|+++.++++++.|+.|++||+..
T Consensus 313 -------------------------------------~~~~~~~h~~~v~~i~--~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 313 -------------------------------------KLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -------------------------------------CSEEEECCSSCEEEEE--ECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -------------------------------------CeEEeecCCCCEEEEE--ECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 0112334555666666 6777766688888888888888776
Q ss_pred --------------ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 431 --------------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 431 --------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
.+.+....+|...|.+++|+|+++.++++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 35667778899999999999998878999999999999998753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-30 Score=253.58 Aligned_cols=270 Identities=14% Similarity=0.121 Sum_probs=231.0
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
.++++++.++.|++||+.+++....+..|.. +.++. ++++++.++++++.|+.|++||+.+++.+..+..+. .+.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~ 78 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQG 78 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccc
Confidence 4677888899999999999999988887765 67777 889999867888899999999999999988887665 9999
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE-EEeeCCCcEEEEeCCC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV-CTGSQDRTACVWRLPD 525 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~ 525 (706)
++|+|+++.++++++.++.|++||+.... .... ..+...+.+++|+|+++.+ ++++.++.|++||+.+
T Consensus 79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~----------~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNT----------VAGT-VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTE----------EEEE-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eEECCCCCEEEEEECCCCEEEEEECCCCe----------EEEE-EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 99999998666777788999999998652 2222 3345678999999999977 6778899999999999
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEE-EEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe---CCCC
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVV-ITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG---ADGL 601 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~ 601 (706)
++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ .++.
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 148 KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc
Confidence 9988888765 457999999999987 677889999999999998887776 566889999999999999888 6899
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCchhH
Q 005254 602 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~ 654 (706)
|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus 226 v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 9999999999999888765 47899999999987 5678899999999987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-30 Score=260.54 Aligned_cols=341 Identities=12% Similarity=0.069 Sum_probs=262.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC--CCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL--STLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~ 100 (706)
+.+++|++.++++...+ .|.+||..+++++..+..+.. +.+++|+|||++|++++.++.|.+||+ .+++.+.++.
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~- 219 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK- 219 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence 34589999888887765 899999999999999984433 899999999999999999999999999 8999999988
Q ss_pred cCCCeEEEEECC----CCCEEEEecC-CCcEEEEECCCCeEEEEeeCC-----------CCcEEEEEEcCCCCceEEEEE
Q 005254 101 HDGPAIGMACHP----SGGLLATAGA-DRKVLVWDVDGGFCTHYFKGH-----------KGVVSSILFHPDTDKSLLFSG 164 (706)
Q Consensus 101 ~~~~v~~~~~s~----~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l~~~ 164 (706)
+...+..++|+| ||++|++++. +++|.+||..+++++..+..+ ...+..+.++|++. .++++.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~-~~~vs~ 298 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNV 298 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS-EEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC-EEEEEE
Confidence 456789999999 9999999874 899999999999998887642 23789999999865 467788
Q ss_pred ecCCeEEEEECCCCeeEE--EeecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCC
Q 005254 165 SDDATVRVWDLLAKKCVA--TLDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPG 241 (706)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (706)
..++.|.+||+.+.+.+. .+ .+...+..++|+|+|+++++++ .++.|.+||..+++....++...
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~----------- 366 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK----------- 366 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----------
T ss_pred CCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----------
Confidence 889999999998866543 33 3556788899999999877665 57899999998776544332100
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEE
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (706)
T Consensus 367 -------------------------------------------------------------------------------- 366 (543)
T 1nir_A 367 -------------------------------------------------------------------------------- 366 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEE
Q 005254 322 VTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLC 401 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~ 401 (706)
..|.+....
T Consensus 367 -----------------------------------------------------------------------~ph~g~g~~ 375 (543)
T 1nir_A 367 -----------------------------------------------------------------------TPHPGRGAN 375 (543)
T ss_dssp -----------------------------------------------------------------------SBCCTTCEE
T ss_pred -----------------------------------------------------------------------CCCCCCCcc
Confidence 001110011
Q ss_pred eeeeeecCCCEEEEEee-CCCcEEEEeCCC-------ceEEEEEeCCCcCeEEEEEecCCCeEEEEec-------CCCeE
Q 005254 402 LDTCALSSGKILIVTGS-KDNSVRLWDSES-------RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGS-------SDHTI 466 (706)
Q Consensus 402 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~d~~i 466 (706)
+ +.|++..+++++. .|++|.+||..+ .+.++.+..|...+..++++|+++ .|++++ .+++|
T Consensus 376 ~---~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~-~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 376 F---VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSV 451 (543)
T ss_dssp E---EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC-EEEECCTTCSSHHHHTCE
T ss_pred c---CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC-cEEEecCCCCCcccCceE
Confidence 1 3466556577765 689999999998 899999999998999999999998 677765 27899
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-----CCCcEEEEeCCCccEEEEEeec
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-----QDRTACVWRLPDLVSVVTFRGH 535 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~ 535 (706)
.+||+.+.+...+. .......-+..+...+..+.|+|+|+.++++. .++.|.|||.++++++..++.+
T Consensus 452 ~v~d~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 452 AVFDLKNLDAKYQV-LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EEEETTCTTSCCEE-ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEECCCCCCCeEE-eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 99999876521000 00000000134567899999999999998763 4799999999999999988854
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-30 Score=259.10 Aligned_cols=336 Identities=13% Similarity=0.080 Sum_probs=261.4
Q ss_pred EEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC--CCCeEEEEeeCCC
Q 005254 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV--DGGFCTHYFKGHK 144 (706)
Q Consensus 67 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~ 144 (706)
+++|++.++++++.++.|.+||..+++++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899999999999999999999999999999984433 889999999999999999999999999 8899888887 55
Q ss_pred CcEEEEEEcC----CCCceEEEEEe-cCCeEEEEECCCCeeEEEeecc----------cc-eEEEEEEecCCCE-EEEEe
Q 005254 145 GVVSSILFHP----DTDKSLLFSGS-DDATVRVWDLLAKKCVATLDKH----------FS-RVTSMAITSDGST-LISAG 207 (706)
Q Consensus 145 ~~v~~~~~~~----~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~-l~~~~ 207 (706)
..+..++|+| +++. +++++ .+++|.+||..+++++..+..+ .. .+.++.++|++.. +++..
T Consensus 222 ~~p~~va~sp~~~~dg~~--l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRY--TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp SEEEEEEECCSTTCTTTE--EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCcceEEeCCCcCCCCCE--EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 6789999999 9886 66666 5899999999999998887642 22 6889999997765 45556
Q ss_pred CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEE
Q 005254 208 RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 287 (706)
.++.|.+||+.+.+.+...
T Consensus 300 ~~g~i~vvd~~~~~~l~~~------------------------------------------------------------- 318 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVT------------------------------------------------------------- 318 (543)
T ss_dssp TTTEEEEEECTTSSSCEEE-------------------------------------------------------------
T ss_pred CCCeEEEEEecCCCcceeE-------------------------------------------------------------
Confidence 7888999988754321100
Q ss_pred eeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCc
Q 005254 288 EQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367 (706)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 367 (706)
T Consensus 319 -------------------------------------------------------------------------------- 318 (543)
T 1nir_A 319 -------------------------------------------------------------------------------- 318 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC----CCcC
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG----HMGA 443 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~ 443 (706)
.+. +...+..+. ++|+++.+++++..+++|.+||..+++++..+.. |.+.
T Consensus 319 -----------------------~i~-~~~~~~~~~--~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 319 -----------------------SIG-AAPFLHDGG--WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp -----------------------EEE-CCSSCCCEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred -----------------------Eec-cCcCccCce--ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 000 001111222 7788888677777789999999999998887764 4443
Q ss_pred eEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-------CC
Q 005254 444 VGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-------QD 515 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~d 515 (706)
...+ ++|++..+++++. .|++|.+|++..... .....+....+..+...+..++++|++++|++++ .+
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~---~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH---PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC---TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCC---chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 3333 5777555777775 689999999976321 1122446777888888889999999999999987 26
Q ss_pred CcEEEEeCCCccEE-EEE--------eecCCcEEEEEEccCCCEEEEec-----CCCcEEEEEcCCCceEEEEeec
Q 005254 516 RTACVWRLPDLVSV-VTF--------RGHKRGIWSVEFSPVDQVVITAS-----GDKTIKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 516 g~i~i~d~~~~~~~-~~~--------~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~ 577 (706)
++|.+||+.+++.. ..+ ..+...+..++|+|+|+.++++. .|+.|.|||..+++++.+++.+
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 79999999998876 443 34577899999999999988762 4799999999999999998753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=268.24 Aligned_cols=287 Identities=15% Similarity=0.061 Sum_probs=184.5
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-----EeeCCCCcEEEEEEcCC------CCceEEEEEecCCe
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-----YFKGHKGVVSSILFHPD------TDKSLLFSGSDDAT 169 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~ 169 (706)
|...+....+++++.+||+++.|++|++||.++++... .+.+|.+.|.+++|+|. .+..+|++++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 55555666777888999999999999999999886543 35789999999999982 12346999999999
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEecCCC-EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccc
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITSDGS-TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (706)
|++||+.++..+..+..|...+.+++|+|++. +|++++.||.|++||+.+++...........
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~---------------- 231 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV---------------- 231 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C----------------
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc----------------
Confidence 99999999988888889999999999999875 7999999999999999876544332110000
Q ss_pred ccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCce
Q 005254 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328 (706)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (706)
T Consensus 232 -------------------------------------------------------------------------------- 231 (393)
T 4gq1_A 232 -------------------------------------------------------------------------------- 231 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeee-
Q 005254 329 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCAL- 407 (706)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~- 407 (706)
+...+... +...........+|...+.++. +.
T Consensus 232 -----------------------~~~~~~s~----------------------~~~~~~~~~~~~~~~~~v~~v~--~~~ 264 (393)
T 4gq1_A 232 -----------------------KNPWLLTL----------------------NTLPLVNTCHSSGIASSLANVR--WIG 264 (393)
T ss_dssp -----------------------SCCCSEEE----------------------ESGGGC------CCSSSCSEEE--EET
T ss_pred -----------------------ccceEEec----------------------ccccceeeeecccccccceeee--eec
Confidence 00000000 0000000112234555666665 55
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccccee
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK 487 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 487 (706)
+++.. +++++.|+.+++||+..++....+..+...+..+.+.|+.+ .+.
T Consensus 265 ~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~----------------------------- 313 (393)
T 4gq1_A 265 SDGSG-ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ-GIS----------------------------- 313 (393)
T ss_dssp TTTCE-EEEECTTSEEEEEEC-------------------CCSCSEE-EEC-----------------------------
T ss_pred CCCCE-EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc-ccc-----------------------------
Confidence 45555 99999999999999999888777777777777777777633 110
Q ss_pred EEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 488 AVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 488 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
.+...+..+.+.+ ++.++++|+.||.|++||+.+++....+..|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 314 ----~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 314 ----LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ----ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 0111122222223 455777888999999999999999888889999999999999999999998877 7777653
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=288.61 Aligned_cols=250 Identities=24% Similarity=0.379 Sum_probs=217.5
Q ss_pred EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--CceEEEEEeCCCcCeEEEEEecC--CCeEEEEecCCCe
Q 005254 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRCCVGVGTGHMGAVGAVAFSKK--LQNFLVSGSSDHT 465 (706)
Q Consensus 390 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~ 465 (706)
..+.+|.+.|.++. ++|+++. +++|+.||.|++||+. +++.+..+.+|...|.+++|+|+ +. ++++++.||.
T Consensus 3 ~~l~gH~~~V~~l~--~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~ 78 (753)
T 3jro_A 3 VIANAHNELIHDAV--LDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK 78 (753)
T ss_dssp -----CCCCEEEEC--CCSSSCC-EEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSC
T ss_pred eecccCcceeEEEE--ECCCCCe-EEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCe
Confidence 35788999999998 8888887 9999999999999998 56777888999999999999987 65 8999999999
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc--cEEEEEeecCCcEEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN--DSLVCTGSQDRTACVWRLPDL--VSVVTFRGHKRGIWS 541 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~ 541 (706)
|++||+..+. .........|...|++++|+|+ ++++++|+.||.|++||+.++ .....+.+|...|.+
T Consensus 79 I~vwd~~~~~--------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 79 VLIWKEENGR--------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEEEEETTE--------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred EEEEECCCCc--------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence 9999998641 2245566779999999999999 999999999999999999877 345567789999999
Q ss_pred EEEcc-------------CCCEEEEecCCCcEEEEEcCCC----ceEEEEeecccCEEEEEEEeC---CCEEEEEeCCCC
Q 005254 542 VEFSP-------------VDQVVITASGDKTIKIWSISDG----SCLKTFEGHTSSVLRASFLTR---GAQIVSCGADGL 601 (706)
Q Consensus 542 ~~~s~-------------~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~ 601 (706)
++|+| ++.+|++++.||.|++||+.++ .+...+.+|...|++++|+|+ +++|++++.||.
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 99999 5899999999999999999877 556778889999999999999 899999999999
Q ss_pred EEEEECCCCe-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 602 VKLWTVRTGE-----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 602 i~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
|++||+.+++ .+.....|.+.|++++|+|++++|++++.||.|++|++.+
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999998874 3333446889999999999999999999999999999985
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=289.99 Aligned_cols=255 Identities=20% Similarity=0.339 Sum_probs=213.6
Q ss_pred EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC--CCeEEEEeeccCCCeEEEEECCC--CCEEEEecCCCcEEE
Q 005254 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS--TLKCLRSWKGHDGPAIGMACHPS--GGLLATAGADRKVLV 128 (706)
Q Consensus 53 ~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v 128 (706)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 66788899999999999999998 999999999999999
Q ss_pred EECCCCe--EEEEeeCCCCcEEEEEEcCC--CCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEec----
Q 005254 129 WDVDGGF--CTHYFKGHKGVVSSILFHPD--TDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITS---- 198 (706)
Q Consensus 129 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~---- 198 (706)
||+.+++ .+..+.+|...|.+++|+|+ ++. +++|+.||.|++||+.++. ....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~--l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCE--EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 9999987 67778889999999999998 554 9999999999999998773 4456678999999999999
Q ss_pred ---------CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 199 ---------DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 199 ---------~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++.++++++.||.|++||++++....
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------------------------------------------- 194 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------------------------- 194 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEE---------------------------------------------
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccc---------------------------------------------
Confidence 58899999999999999976542111
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEe
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRL 349 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (706)
.....+
T Consensus 195 --------------------------------------------------------------------------~~~~~~ 200 (753)
T 3jro_A 195 --------------------------------------------------------------------------VLESTL 200 (753)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred --------------------------------------------------------------------------eeeeee
Confidence 111334
Q ss_pred cccCceeeEeeEeCCC--CcEEEEEecCCcEEEEeCCCce-----eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 350 VGYNEEILDLKFLGEE--EQYLAVATNIEQVQVYDLSSMS-----CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~--~~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
.+|...+.+++|.|.. +.++++++.+|.|++||+.++. .......|...+.++. ++|++.. +++++.||.
T Consensus 201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~--~spdg~~-l~s~s~Dg~ 277 (753)
T 3jro_A 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS--WSLSGNV-LALSGGDNK 277 (753)
T ss_dssp CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEE--ECTTTCC-EEEECSSSC
T ss_pred cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEE--EcCCCCE-EEEEcCCCE
Confidence 4577888999998865 8999999999999999998864 3334455788888888 8888887 999999999
Q ss_pred EEEEeCCCc
Q 005254 423 VRLWDSESR 431 (706)
Q Consensus 423 i~i~d~~~~ 431 (706)
|++|++..+
T Consensus 278 I~vwd~~~~ 286 (753)
T 3jro_A 278 VTLWKENLE 286 (753)
T ss_dssp EECCBCCSS
T ss_pred EEEEecCCC
Confidence 999999854
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=260.62 Aligned_cols=233 Identities=12% Similarity=0.120 Sum_probs=176.5
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEE-----EEeCCCcCeEEEEEec--------CCCeEEEEecCCCeEEEEEec
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVG-----VGTGHMGAVGAVAFSK--------KLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+....++++++.|++|++||..++.... .+.+|.+.|.+++|+| +++ +|++++.|++|++||+.
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLT 174 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECC
Confidence 445555569999999999999999886543 2568999999999998 554 99999999999999997
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEcCCC-CEEEEeeCCCcEEEEeCCCccEEEEE-------------------
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND-SLVCTGSQDRTACVWRLPDLVSVVTF------------------- 532 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~------------------- 532 (706)
... .......|..++.+++|+|++ .+|++++.||.|++||+.+++.....
T Consensus 175 ~~~----------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 175 DEG----------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TTE----------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCc----------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 643 556677889999999999987 48999999999999999877544322
Q ss_pred ------eecCCcEEEEEEc-cCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEe-----------------
Q 005254 533 ------RGHKRGIWSVEFS-PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT----------------- 588 (706)
Q Consensus 533 ------~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~----------------- 588 (706)
.+|...+.++.|+ |+++.|++++.|+++++||+..++....+..|...+..+.+.|
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 3567788899987 7999999999999999999988877777666655544443333
Q ss_pred ---CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 589 ---RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 589 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
++.++++|+.||.|++||+.+++++..+..|..+|.+++|+|||++|++++.|| +.+|++.
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 334678888999999999999999888889999999999999999999998776 6666653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=253.04 Aligned_cols=212 Identities=10% Similarity=0.091 Sum_probs=161.8
Q ss_pred EEEEeCCCceeeEeee-CCcceEEEeeeeeec--CCCEEEEEeeCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCC
Q 005254 378 VQVYDLSSMSCSYVLA-GHSEIVLCLDTCALS--SGKILIVTGSKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKL 453 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~ 453 (706)
+.+|+..+.+....+. +|...+.++. +.| +++. +++++.||.|++||+.+++.+.... .+...+.+++|+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEIIYMY--GHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEEEEE--CCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred eEEeecCCcceeEEeecCCCCCEEEEE--cCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence 3344444444333333 5667788887 777 7776 9999999999999999998877664 455689999999998
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
. ++++|+.||.|++||++.... ....+.. |..+|++++|+|++.+|++++ ++.|++||+++++....+
T Consensus 183 ~-~lasg~~dg~i~iwd~~~~~~---------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 183 L-LLALYSPDGILDVYNLSSPDQ---------ASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp C-EEEEECTTSCEEEEESSCTTS---------CCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred C-EEEEEcCCCEEEEEECCCCCC---------CccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence 7 899999999999999987641 1134455 899999999999999999999 459999999988765544
Q ss_pred ee---cCCcEE--EEEEccCCCEEEEecC-CCcEEEEEcCCCceEEEEeecccCEEEEEEEe---CCCEEEEEeCCCCEE
Q 005254 533 RG---HKRGIW--SVEFSPVDQVVITASG-DKTIKIWSISDGSCLKTFEGHTSSVLRASFLT---RGAQIVSCGADGLVK 603 (706)
Q Consensus 533 ~~---~~~~v~--~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~ 603 (706)
.. |...+. +++|+|++++|++++. |+.|++|++.+....... .++..+.|.+ +.+.+++++.||.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceE
Confidence 43 333343 6999999999999988 999999999766543333 5677889988 889999999999998
Q ss_pred EEEC
Q 005254 604 LWTV 607 (706)
Q Consensus 604 iwd~ 607 (706)
++-.
T Consensus 328 ~~~~ 331 (343)
T 3lrv_A 328 AILK 331 (343)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=256.97 Aligned_cols=262 Identities=11% Similarity=0.050 Sum_probs=207.6
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC---------CceEEE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE---------SRCCVG 435 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~ 435 (706)
++.++++++.||.|++||+.+++....+. ...+.++. +.|. +++++.|+++++|+.. +++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~--~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGG--EHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTC--CCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeee--eCCc----eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 67789999999999999999988877766 34454444 4444 8999999999999665 455444
Q ss_pred EEe-CCCcCeEEEEEec--CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEE
Q 005254 436 VGT-GHMGAVGAVAFSK--KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 436 ~~~-~~~~~v~~~~~~~--~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~ 511 (706)
... .|...|.+++|+| +++ ++++++.||.|++||+.... ..... ..+...+++++|+|++.+|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~----------~~~~~~~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS----------QYIVHSAKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC----------EEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc----------EEEEEecCCCCceEEEEECCCCCEEEE
Confidence 443 6778899999999 877 89999999999999998653 22222 345567999999999999999
Q ss_pred eeCCCcEEEEeCCCccEE-EEEee-cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee---cccCE--EEE
Q 005254 512 GSQDRTACVWRLPDLVSV-VTFRG-HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSV--LRA 584 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i--~~~ 584 (706)
|+.||.|++||+++++.. ..+.. |..+|++++|+|++.+|++++ |+.|++||+++++.+..+.. |...+ .++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTY 266 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEE
Confidence 999999999999999887 78888 999999999999999999999 55999999998877654443 33333 369
Q ss_pred EEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCcEEEEECC
Q 005254 585 SFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKHEDKIWALAVGK---KTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|+|+|++|++++. |+.+++|++.+....... .++..+.|++ +.+.+++++.||.+.++-..
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99999999999998 999999999765433222 5677888888 88889999999998887543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-28 Score=257.08 Aligned_cols=355 Identities=10% Similarity=0.068 Sum_probs=248.8
Q ss_pred CccEEEEEEccCCCEEEEEec-cC-----eEEEEECCCCeEEEEeeccCCC------------------------eEEEE
Q 005254 60 SDTITALALSPDDKLLFSSGH-SR-----EIRVWDLSTLKCLRSWKGHDGP------------------------AIGMA 109 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~------------------------v~~~~ 109 (706)
...|.+++|||||++|++++. |+ .|.+||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999988 87 8999999999887777655433 78999
Q ss_pred ECCCCCEEEEecCCCcEEEEECCCCe--EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 110 CHPSGGLLATAGADRKVLVWDVDGGF--CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 110 ~s~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
|||||++|++++. +.|++||+.++. ....+..|...+..++|+|||+. ++.++ ++.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~--la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF--VSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE--EEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE--EEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999886 999999999883 34556678889999999999986 66665 568999999988776554433
Q ss_pred cce----------------EEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccccc
Q 005254 188 FSR----------------VTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSS 250 (706)
Q Consensus 188 ~~~----------------v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (706)
... +..++|+|||++|++++.|+ .+..|+..
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~-------------------------------- 239 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY-------------------------------- 239 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE--------------------------------
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC--------------------------------
Confidence 332 36788999998888876543 11111100
Q ss_pred ccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 251 YNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
T Consensus 240 -------------------------------------------------------------------------------- 239 (741)
T 2ecf_A 240 -------------------------------------------------------------------------------- 239 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCC
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSG 410 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 410 (706)
...........+. +...+
T Consensus 240 ------------------------------------------------------------~~~p~~~~~~~~~--~~~~g 257 (741)
T 2ecf_A 240 ------------------------------------------------------------EVYADRTDVIEQR--YPAAG 257 (741)
T ss_dssp ------------------------------------------------------------EECSSCEEEEEEE--CCBTT
T ss_pred ------------------------------------------------------------CCCCCcccceEee--cCCCC
Confidence 0000000000110 11111
Q ss_pred CEEEEEeeCCCcEEEEeCCC-ceEEEEEe--CCCcCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccc
Q 005254 411 KILIVTGSKDNSVRLWDSES-RCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
.. .....|++||+.+ ++...... .+...+..++| |+|+.++++.. .+..|.+||+.++.
T Consensus 258 ~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-------- 323 (741)
T 2ecf_A 258 DA-----NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-------- 323 (741)
T ss_dssp SC-----CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC--------
T ss_pred CC-----CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc--------
Confidence 00 0012466677776 66544332 36778899999 99984444332 36789999987653
Q ss_pred cceeEEEeecCc----ceEEEEEcCCCCEEEEeeCCCcEEEEeCC-CccEEEEEeecCCcEEEE-EEccCCCEEEE-ecC
Q 005254 484 LKAKAVVAAHGK----DINSLAVAPNDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWSV-EFSPVDQVVIT-ASG 556 (706)
Q Consensus 484 ~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~-~~~ 556 (706)
.......+.. .+..++|+|||+++++++.+|.++||.+. ++. ...+..|...+..+ .|+|+++.|+. ++.
T Consensus 324 --~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 324 --QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp --EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred --eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence 3333333332 45689999999999999999988888765 344 77777788888887 59999987754 444
Q ss_pred CC--cEEEEEcCC-CceEEEEeecccCEEEEEEEeCCCEEEEEeCC----CCEEEEECCCC
Q 005254 557 DK--TIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTG 610 (706)
Q Consensus 557 dg--~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~ 610 (706)
++ .+++|++.. +.....+.. ...+..+.|+|||++|+....+ ..+.+|+...+
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 55 899999864 555666664 5678899999999998876554 46889987543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=252.13 Aligned_cols=318 Identities=14% Similarity=0.127 Sum_probs=234.4
Q ss_pred ceEEcCCCCEEEEeeC--C-----eEEEEEccCCeEEEeecCCC------------------------ccEEEEEEccCC
Q 005254 24 PLVVSSDGSFIACACG--E-----SINIVDLSNASIKSTIEGGS------------------------DTITALALSPDD 72 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~--~-----~i~i~d~~~~~~~~~l~~~~------------------------~~i~~l~~s~~~ 72 (706)
+++|||||++|++++. + .|.+||+.+++....+..+. ..|.+++|||||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 6999999999999885 3 69999999998777666543 238899999999
Q ss_pred CEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCc----
Q 005254 73 KLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV---- 146 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---- 146 (706)
++|++++. +.|.+||+.++. ....+..|...+.+++|||||++||+++ ++.|++||+.+++.......+...
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g 198 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNG 198 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEES
T ss_pred CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecc
Confidence 99999886 899999999883 4556777888999999999999999987 468999999998877655544443
Q ss_pred ------------EEEEEEcCCCCceEEEEEecCC---------------------------------eEEEEECCC-Cee
Q 005254 147 ------------VSSILFHPDTDKSLLFSGSDDA---------------------------------TVRVWDLLA-KKC 180 (706)
Q Consensus 147 ------------v~~~~~~~~~~~~~l~~~~~dg---------------------------------~i~vwd~~~-~~~ 180 (706)
+..++|+|||+. |++++.|+ .|.+||+.+ ++.
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 477999999987 77776654 788899988 776
Q ss_pred EEEee--cccceEEEEEEecCCCEEEEEeC-----CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccc
Q 005254 181 VATLD--KHFSRVTSMAITSDGSTLISAGR-----DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (706)
Q Consensus 181 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (706)
..... .|...+..++| |||++|++++. +..|++||+.+++....
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~---------------------------- 327 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL---------------------------- 327 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE----------------------------
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE----------------------------
Confidence 54433 47778999999 99998887754 34566666654432211
Q ss_pred hhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
T Consensus 328 -------------------------------------------------------------------------------- 327 (741)
T 2ecf_A 328 -------------------------------------------------------------------------------- 327 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecC
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSS 409 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~ 409 (706)
+..+.. .+..+. ++|+
T Consensus 328 ----------------------------------------------------------~~~~~~~~~~~~~~~~--~spd 347 (741)
T 2ecf_A 328 ----------------------------------------------------------AHETSPTWVPLHNSLR--FLDD 347 (741)
T ss_dssp ----------------------------------------------------------EEEECSSCCCCCSCCE--ECTT
T ss_pred ----------------------------------------------------------EEcCCCCcCCcCCceE--ECCC
Confidence 100000 111222 7788
Q ss_pred CCEEEEEeeCCCcEEEEeCC-CceEEEEEeCCCcCeEEE-EEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccc
Q 005254 410 GKILIVTGSKDNSVRLWDSE-SRCCVGVGTGHMGAVGAV-AFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~ 485 (706)
++ ++++++.+|.+++|.+. ++. ...+..+...+..+ .|+|+++.++++++.++ .+++|++.....
T Consensus 348 g~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~--------- 416 (741)
T 2ecf_A 348 GS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG--------- 416 (741)
T ss_dssp SC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC---------
T ss_pred Ce-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC---------
Confidence 88 58888889987777665 344 67777788888887 59999986666777666 899999874221
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCC----CcEEEEeCCCc
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD----RTACVWRLPDL 526 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~ 526 (706)
....+.. ...+..++|+|||++|+....+ ..+.+++....
T Consensus 417 ~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred Ceeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 1222222 4567899999999998876544 46888887543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=230.55 Aligned_cols=223 Identities=10% Similarity=0.049 Sum_probs=177.3
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCC---cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe--E
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDN---SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT--I 466 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i 466 (706)
+..|...+.++. ++|+++. +++++.++ .|++||+.+++.. .+..+...+.+++|+|+|+.++++++.++. |
T Consensus 174 l~~~~~~v~~~~--~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 174 VHRSPQPLMSPA--WSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEESSCEEEEE--ECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EeCCCCcceeeE--EcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 334555666666 8888887 67776664 8999999998775 456678899999999999855557776654 8
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-CC--cEEEEeCCCccEEEEEeecCCcEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-DR--TACVWRLPDLVSVVTFRGHKRGIWSVE 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~ 543 (706)
++||+..+ ....+..+...+.+++|+|||++|++++. ++ .|++||+.+++. ..+..+...+.+++
T Consensus 250 ~~~d~~~~-----------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~ 317 (415)
T 2hqs_A 250 YVMDLASG-----------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDAD 317 (415)
T ss_dssp EEEETTTC-----------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEE
T ss_pred EEEECCCC-----------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeE
Confidence 88998764 23445567788999999999999998876 44 677889887764 34555777899999
Q ss_pred EccCCCEEEEecCC---CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC---CEEEEECCCCeEEEEec
Q 005254 544 FSPVDQVVITASGD---KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG---LVKLWTVRTGECIATYD 617 (706)
Q Consensus 544 ~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 617 (706)
|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+..++|+|||++|++++.++ .|++||+. ++....+.
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~ 394 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 394 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEee
Confidence 99999999988764 58999999988774 455454 899999999999999988877 79999986 66677888
Q ss_pred cCCCcEEEEEEcCCCC
Q 005254 618 KHEDKIWALAVGKKTE 633 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~ 633 (706)
.|.+.|.+++|+|...
T Consensus 395 ~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 395 ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CSSSEEEEEEECCCCC
T ss_pred CCCCCCcCCccccccc
Confidence 9999999999999754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-27 Score=228.95 Aligned_cols=301 Identities=13% Similarity=0.043 Sum_probs=225.5
Q ss_pred CCeEEEEECCCCC-EEEEec----CCC----cEEEEEC--CCCeEE--EEeeCCCCcEEEEEEcCC--------------
Q 005254 103 GPAIGMACHPSGG-LLATAG----ADR----KVLVWDV--DGGFCT--HYFKGHKGVVSSILFHPD-------------- 155 (706)
Q Consensus 103 ~~v~~~~~s~~~~-~l~~~~----~d~----~i~vw~~--~~~~~~--~~~~~~~~~v~~~~~~~~-------------- 155 (706)
..+....|++.+. ++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4667778888775 565765 467 8999999 898877 457888888888777651
Q ss_pred CCceEEEEEecC------CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCcceeee
Q 005254 156 TDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYSCKLTV 226 (706)
Q Consensus 156 ~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~~~~~~ 226 (706)
+.. ++.++.+ +.|++||+. +.....+..|...+.+++|+|+|++|++++.++ .|++||+.+++..
T Consensus 143 ~~~--l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 143 RTR--IAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp TCE--EEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred CCE--EEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 344 4444443 799999997 455677778999999999999999999998775 7888877654321
Q ss_pred cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccc
Q 005254 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRG 306 (706)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCc
Q 005254 307 FTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSM 386 (706)
Q Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~ 386 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc--EEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC
Q 005254 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS--VRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464 (706)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 464 (706)
.+..+...+.++. ++|+++.++++++.++. |++||+.+++. ..+..+...+.+++|+|+++.+++++..++
T Consensus 217 ----~l~~~~~~~~~~~--~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 217 ----QVASFPRHNGAPA--FSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp ----EEECCSSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ----EeecCCCcccCEE--EcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 1122233444555 78888875557766654 99999998876 456778889999999999984444443455
Q ss_pred --eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---CcEEEEeCCCccEEEEEeecCCcE
Q 005254 465 --TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---RTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 465 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
.|.+||+..+. ...+..+...+.+++|+|||++|++++.+ ..|++||+.+++.. .+..+. .+
T Consensus 290 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~ 356 (415)
T 2hqs_A 290 RPQVYKVNINGGA-----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LD 356 (415)
T ss_dssp SCEEEEEETTSSC-----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SC
T ss_pred CcEEEEEECCCCC-----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-Cc
Confidence 56666766542 22233456678899999999999988764 58999999988764 455554 89
Q ss_pred EEEEEccCCCEEEEecCCC---cEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 540 WSVEFSPVDQVVITASGDK---TIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 540 ~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
.+++|+|+|++|++++.++ .|++||+. ++....+..|.+.|.+++|+|.-
T Consensus 357 ~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 357 ETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 9999999999999988877 79999986 66677888899999999999964
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=253.84 Aligned_cols=359 Identities=9% Similarity=0.052 Sum_probs=239.9
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEecCC---------CcEEEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAGAD---------RKVLVW 129 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d---------~~i~vw 129 (706)
.+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998876 7899999999999998888887765 49999999999999998764 788899
Q ss_pred ECCCCeEEEEee---CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceE---------------
Q 005254 130 DVDGGFCTHYFK---GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV--------------- 191 (706)
Q Consensus 130 ~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v--------------- 191 (706)
|+.+++. ..+. .|...+..++|+|||+. ++.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~--la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ--LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC--EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCE--EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9998875 3333 34555889999999987 777765 789999999988776655443333
Q ss_pred ---EEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 192 ---TSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 192 ---~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+++|+|||+.|++++.++ .+.+|++......
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 208 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS-------------------------------------------- 208 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS--------------------------------------------
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCc--------------------------------------------
Confidence 7899999999988887543 3444443210000
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
T Consensus 209 -------------------------------------------------------------------------------- 208 (723)
T 1xfd_A 209 -------------------------------------------------------------------------------- 208 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
+...+..+. +.+++.. ..+..|++||
T Consensus 209 -----------------------------------------------~~~~~~~~~--~~~~G~~-----~~~~~l~~~d 234 (723)
T 1xfd_A 209 -----------------------------------------------IYPTVKPYH--YPKAGSE-----NPSISLHVIG 234 (723)
T ss_dssp -----------------------------------------------SSCCCEEEE--CCBTTSC-----CCEEEEEEEE
T ss_pred -----------------------------------------------CCCcceecc--CCCCCCC-----CCeeEEEEEE
Confidence 000011111 2222211 1223577777
Q ss_pred CCCceEEEEEeCC------CcCeEEEEEecCCCeEEEEec----CCCeEEEEEecCCCCCCCcccccceeEEEee-cCcc
Q 005254 428 SESRCCVGVGTGH------MGAVGAVAFSKKLQNFLVSGS----SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKD 496 (706)
Q Consensus 428 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 496 (706)
+.+++....+..+ ...+..++|+|+|+ ++++.. .+..|.+||+.++. ....... +...
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~----------~~~~~~~~~~~~ 303 (723)
T 1xfd_A 235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV----------CTKKHEDESEAW 303 (723)
T ss_dssp SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC----------EEEEEEEECSSC
T ss_pred CCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc----------ceEEEEeccCCE
Confidence 7776654444433 56788999999998 555543 34679999987653 2222222 2333
Q ss_pred e----EEEEEcCCCCEEEE--eeCCC------cEEEEe-CCCccE--EEEEeecCCcEEE-EEEccCCCEEEEecCC---
Q 005254 497 I----NSLAVAPNDSLVCT--GSQDR------TACVWR-LPDLVS--VVTFRGHKRGIWS-VEFSPVDQVVITASGD--- 557 (706)
Q Consensus 497 i----~~~~~s~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d--- 557 (706)
+ ..++|+|||+.|+. +..++ .|.+|| ..++.. ...+..+...+.. ++|+||++.|+..+.+
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 3 37899999997775 44666 577777 344431 4444444445554 6999999999766554
Q ss_pred CcEEEEEcCCCc--eEEEEee---cccCEEEEEEEeCCCEEEEEeCC-C--CEEEEECCCCeEEE
Q 005254 558 KTIKIWSISDGS--CLKTFEG---HTSSVLRASFLTRGAQIVSCGAD-G--LVKLWTVRTGECIA 614 (706)
Q Consensus 558 g~i~iwd~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~ 614 (706)
+.+++|++.... ....+.. |...+..++|+|||++|+..... + ...+++..+++.+.
T Consensus 384 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 384 RRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp TCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred cceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 789999986432 3333443 56678899999999988775432 2 33455665555443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=237.99 Aligned_cols=353 Identities=12% Similarity=0.051 Sum_probs=231.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEE-EeecCCC-----------------ccEEEEEEccCCCEEEEEeccCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIK-STIEGGS-----------------DTITALALSPDDKLLFSSGHSREIR 85 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~-~~l~~~~-----------------~~i~~l~~s~~~~~l~s~~~d~~i~ 85 (706)
.+.|+ |+.+++..++.| +||+.+++.+ ..+..|. ..|.+++|||| +.++.+. ++.|+
T Consensus 30 ~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~ 104 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV 104 (706)
T ss_dssp TCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred CCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence 47788 556666666678 9999999873 3333332 46999999999 6666554 58999
Q ss_pred EEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-----CeEEEEeeCCCCc--------------
Q 005254 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG-----GFCTHYFKGHKGV-------------- 146 (706)
Q Consensus 86 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~-------------- 146 (706)
+||+.+++... +..+...+.+++|||||++||++ .++.|++||+.+ ++.......+...
T Consensus 105 ~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~ 182 (706)
T 2z3z_A 105 GFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI 182 (706)
T ss_dssp EEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTC
T ss_pred EEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCC
Confidence 99999987654 44467788999999999999995 679999999998 7766544444433
Q ss_pred EEEEEEcCCCCceEEEEEe---------------------------------cCCeEEEEECCCCeeEEEee--cccceE
Q 005254 147 VSSILFHPDTDKSLLFSGS---------------------------------DDATVRVWDLLAKKCVATLD--KHFSRV 191 (706)
Q Consensus 147 v~~~~~~~~~~~~~l~~~~---------------------------------~dg~i~vwd~~~~~~~~~~~--~~~~~v 191 (706)
+.+++|+|||+. |++++ .+..|++||+.+++...... .|...+
T Consensus 183 ~~~~~~SpDg~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 260 (706)
T 2z3z_A 183 EKGTFWSPKGSC--LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL 260 (706)
T ss_dssp CCSEEECTTSSE--EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred CceEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence 489999999987 66665 45789999999888654432 466789
Q ss_pred EEEEEecCCCEEEEEeCCC-----EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceE
Q 005254 192 TSMAITSDGSTLISAGRDK-----VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 192 ~~~~~~~~~~~l~~~~~dg-----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
.+++|+|||++|++++.++ .|++||+.+++....+....
T Consensus 261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~------------------------------------ 304 (706)
T 2z3z_A 261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET------------------------------------ 304 (706)
T ss_dssp EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE------------------------------------
T ss_pred eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc------------------------------------
Confidence 9999999999999887665 77888876542111100000
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
T Consensus 305 -------------------------------------------------------------------------------- 304 (706)
T 2z3z_A 305 -------------------------------------------------------------------------------- 304 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec--CCCEEEEEeeCCCcEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS--SGKILIVTGSKDNSVR 424 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~l~~~~~dg~i~ 424 (706)
. ......+..+. ++| +++ +++++..++.++
T Consensus 305 ------------------~---------------------------~~~~~~~~~~~--~sp~~dg~-~l~~~~~~g~~~ 336 (706)
T 2z3z_A 305 ------------------D---------------------------KHYVEPLHPLT--FLPGSNNQ-FIWQSRRDGWNH 336 (706)
T ss_dssp ------------------C---------------------------SSCCCCCSCCE--ECTTCSSE-EEEEECTTSSCE
T ss_pred ------------------C---------------------------CCeECccCCce--eecCCCCE-EEEEEccCCccE
Confidence 0 00000011122 666 665 477888888888
Q ss_pred EEeCC-CceEEEEEeCCCcCeEE-EEEecCCCeEEEEecCCC----eEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 425 LWDSE-SRCCVGVGTGHMGAVGA-VAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 425 i~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+|.+. ++..+..+..+...+.. ++|+|+++.+++++..++ .|..|++..+. ... ..+...+.
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----------~~~-l~~~~~~~ 404 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----------TKD-LTPESGMH 404 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----------CEE-SCCSSSEE
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----------cee-ccCCCceE
Confidence 88775 56667777777777877 799999986666666665 55555554331 111 12456688
Q ss_pred EEEEcCCCCEEEEeeCC----CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC--cEEEEE
Q 005254 499 SLAVAPNDSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWS 564 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd 564 (706)
+++|+|||++++....+ +.|++||+.+++ ...+ .+...+....+.+.. .+-.-..|| .+..|-
T Consensus 405 ~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 473 (706)
T 2z3z_A 405 RTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKL 473 (706)
T ss_dssp EEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEE
T ss_pred EEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEE
Confidence 99999999988876544 569999998877 3333 344445444443332 233333454 455554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=238.71 Aligned_cols=348 Identities=12% Similarity=0.091 Sum_probs=232.3
Q ss_pred EEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-EEeeccC-----------------CCeEEEEECCCCCEEEEecCCC
Q 005254 63 ITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWKGHD-----------------GPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
+..+.|+ |..+++++.++ | +||+.+++.+ ..+..|. ..|.+++|||| ++++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557777 66677777777 8 9999999873 4443332 56999999999 6666654 59
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-----CeeEEEeecccce---------
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-----KKCVATLDKHFSR--------- 190 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~--------- 190 (706)
.|++||+.+++... +..+...+.+++|+|||+. ++. ..++.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~--la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDR--VAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSE--EEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCE--EEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 99999999987654 4456778899999999886 666 4689999999988 7766544433332
Q ss_pred -----EEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 191 -----VTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 191 -----v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
+.+++|+|||++|++++.|. .+..+.+.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~---------------------------------------------- 211 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIV---------------------------------------------- 211 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEE----------------------------------------------
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEee----------------------------------------------
Confidence 47889999999888876332 11000000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
+...
T Consensus 212 ---------------~~~~------------------------------------------------------------- 215 (706)
T 2z3z_A 212 ---------------DYHP------------------------------------------------------------- 215 (706)
T ss_dssp ---------------ECCS-------------------------------------------------------------
T ss_pred ---------------ccCC-------------------------------------------------------------
Confidence 0000
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
. ........ +...+. ...+..|+
T Consensus 216 --------------------~------------------------------~~~~~~~~--y~~~g~-----~~~~~~l~ 238 (706)
T 2z3z_A 216 --------------------L------------------------------EAESKPLY--YPMAGT-----PSHHVTVG 238 (706)
T ss_dssp --------------------S------------------------------SCEEEEEC--CCBTTS-----CCCEEEEE
T ss_pred --------------------C------------------------------CCceEEee--CCCCCC-----CCCeeEEE
Confidence 0 00000000 000010 11234677
Q ss_pred EEeCCCceEEEEEe--CCCcCeEEEEEecCCCeEEEEecCCC-----eEEEEEecCCCCCCCcccccceeEEEe-ecCc-
Q 005254 425 LWDSESRCCVGVGT--GHMGAVGAVAFSKKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVA-AHGK- 495 (706)
Q Consensus 425 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 495 (706)
+||+.+++...... .+...+..++|+|+++ .|++++.++ .|.+||+.++.. ...... .+..
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~---------~~~~~~~~~~~~ 308 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRF---------VRTLFVETDKHY 308 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCE---------EEEEEEEECSSC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCce---------eeEEEEccCCCe
Confidence 88887776554432 4566789999999998 566665554 899999876420 111111 1222
Q ss_pred --ceEEEEEcC--CCCEEEEeeCCCcEEEEeCC-CccEEEEEeecCCcEEE-EEEccCCCEEEEecC-CC----cEEEEE
Q 005254 496 --DINSLAVAP--NDSLVCTGSQDRTACVWRLP-DLVSVVTFRGHKRGIWS-VEFSPVDQVVITASG-DK----TIKIWS 564 (706)
Q Consensus 496 --~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~-dg----~i~iwd 564 (706)
.+.+++|+| ||+++++++.++.+++|++. ++.....+..+...+.. ++|+|+++.|+.++. ++ .|..||
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 246789999 99999999999999999876 66777788888888877 899999998766554 44 677777
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC----CCEEEEECCCCe
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGE 611 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 611 (706)
+.+++ ...+. |...+..++|+|||++|+....+ +.|++||+.+++
T Consensus 389 ~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 389 IKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 77665 34444 66789999999999998876544 459999998887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=243.18 Aligned_cols=195 Identities=13% Similarity=0.048 Sum_probs=153.2
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc---cEEEEEEccCCCEEEEEecc---------CeEEEEECC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD---TITALALSPDDKLLFSSGHS---------REIRVWDLS 90 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~---~i~~l~~s~~~~~l~s~~~d---------~~i~iwd~~ 90 (706)
.+++|||||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||+++.+ +.+.+||+.
T Consensus 20 ~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred cccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 369999999988776556999999999998888887765 49999999999999998764 789999999
Q ss_pred CCeEEEEee---ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcE------------------EE
Q 005254 91 TLKCLRSWK---GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV------------------SS 149 (706)
Q Consensus 91 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v------------------~~ 149 (706)
+++. ..+. +|...+..++|||||++||+++. +.|++||+.+++.......+...+ .+
T Consensus 100 ~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcce
Confidence 9876 3333 34556889999999999999876 789999999988766655444333 78
Q ss_pred EEEcCCCCceEEEEEecCC----------------------------------eEEEEECCCCeeEEEeecc------cc
Q 005254 150 ILFHPDTDKSLLFSGSDDA----------------------------------TVRVWDLLAKKCVATLDKH------FS 189 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~------~~ 189 (706)
++|+|||+. |++++.++ .|++||+.+++....+..+ ..
T Consensus 178 ~~~SpDg~~--la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 178 HWWSPDGTR--LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEECTTSSE--EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred EEECCCCCE--EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 999999987 66665432 7999999988865666543 57
Q ss_pred eEEEEEEecCCCEEEEEeCC----CEEEEEeCCCCc
Q 005254 190 RVTSMAITSDGSTLISAGRD----KVVNLWDLRDYS 221 (706)
Q Consensus 190 ~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~~~~ 221 (706)
.+..++|+|||++|++.... ..|++||+.+++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 88999999999988766432 456667665543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-24 Score=202.62 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=149.0
Q ss_pred eEEcCCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeE-EEEeec
Q 005254 25 LVVSSDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKC-LRSWKG 100 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~ 100 (706)
..|.++++++++... +.|.+||+.+++.+..+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456677777555543 489999999999988887777777 9999999997777665 88999999999988 777777
Q ss_pred cCCCeEEEEECCCCCEEEEecCCC---cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe-EEEEECC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADR---KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT-VRVWDLL 176 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~vwd~~ 176 (706)
+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+.. ...+..++|+|+++. ++++...++. |.+|++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~-l~~~~~~~~~~i~~~~~~ 159 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNG-LILIDRSSANTVRRFKID 159 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSC-EEEEEETTTTEEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCE-EEEEecCCCceEEEEEEC
Confidence 777766699999999999655553 899999999998887764 455699999999876 3455556677 9999987
Q ss_pred CCeeEE----EeecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcc
Q 005254 177 AKKCVA----TLDKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSC 222 (706)
Q Consensus 177 ~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~ 222 (706)
....+. ...........++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 160 ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 544331 1112345678999999999766655 588999999876654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=205.39 Aligned_cols=277 Identities=11% Similarity=0.081 Sum_probs=206.3
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTG 439 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~ 439 (706)
|.+.....+++...++.|.+||..+++....+..+.... .+. ++|+++.+++++..++.|.+||..+++. ...+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 444456667888889999999999999888877766666 776 8899998667777789999999999887 666666
Q ss_pred CCcCeEEEEEecCCCeEEEEecCC-C--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCC
Q 005254 440 HMGAVGAVAFSKKLQNFLVSGSSD-H--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQD 515 (706)
Q Consensus 440 ~~~~v~~~~~~~~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d 515 (706)
+..+..+++|+|+++ +++++..+ + .|.+||+.... .... ........+++|+|+|++++++ ..+
T Consensus 82 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~----------~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 82 GQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK----------FIST-IPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp CSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE----------EEEE-EECCTTEEEEEECTTSSCEEEEEETT
T ss_pred CCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC----------eEEE-EECCCCccceEECCCCCEEEEEecCC
Confidence 666666699999998 55555555 3 89999987652 2222 2344567899999999866554 555
Q ss_pred Cc-EEEEeCCCccEEE----EEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCce---EEEEeecccCEEEEEE
Q 005254 516 RT-ACVWRLPDLVSVV----TFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSC---LKTFEGHTSSVLRASF 586 (706)
Q Consensus 516 g~-i~i~d~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~ 586 (706)
+. |.+|++.....+. ........+..++|+|+++++++ +..++.|++||+.+++. +..+.. ...+..++|
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~ 228 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVV 228 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEE
Confidence 88 9999987543321 22234556899999999996654 45689999999999988 777764 466788999
Q ss_pred EeCCCEEEEEe-CCCCEEEEECCCCeE--EEEeccC----CC---cEEEEEEcCCCCEEEEEe-CCCcEEEEECCchh
Q 005254 587 LTRGAQIVSCG-ADGLVKLWTVRTGEC--IATYDKH----ED---KIWALAVGKKTEMFATGG-SDALVNLWHDSTAA 653 (706)
Q Consensus 587 s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~ 653 (706)
+|||++|++++ .++.|.+||+.+++. +..+..+ .. ....++|+||+++|++++ .++.|.+|++....
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999876655 477899999999987 4443322 22 235689999999886655 46799999998653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-23 Score=198.49 Aligned_cols=277 Identities=14% Similarity=0.120 Sum_probs=210.9
Q ss_pred CccEEEEEEccCCCEEEEEec-------cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEe-cCCCcEEEEEC
Q 005254 60 SDTITALALSPDDKLLFSSGH-------SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA-GADRKVLVWDV 131 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~ 131 (706)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356789999999999988763 56899999999999888875 3557889999999966554 55799999999
Q ss_pred CCCeEEEEeeCCCCc---------EEEEEEcCCCCceEEEEE--ecCCeEEEEECCCCeeEEEeecccceEEEEEEecCC
Q 005254 132 DGGFCTHYFKGHKGV---------VSSILFHPDTDKSLLFSG--SDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 200 (706)
.+++.+..+..+... +.+++|+|+++. ++++ +.++.|.+||..+++.+..+..+...+.+++|+|+|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT--VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE--EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCE--EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 999988887765432 789999999886 4443 458899999999999988887566668899999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
+++++++.++.|.+||..+++....+....
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------------------------------------------- 226 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLD-------------------------------------------------- 226 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCC--------------------------------------------------
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCC--------------------------------------------------
Confidence 999999999999999987765433221100
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEee
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLK 360 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 360 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (353)
T 3vgz_A 227 -------------------------------------------------------------------------------- 226 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC
Q 005254 361 FLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 361 ~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 440 (706)
.++...+..+. ++|+++.++++...++.|.+||..+++.+..+...
T Consensus 227 --------------------------------~~~~~~~~~~~--~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 227 --------------------------------DGKEHFFINIS--LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp --------------------------------SSSCCCEEEEE--EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred --------------------------------CCCCcccceEE--ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 01112233344 77888875666666789999999999888777654
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 516 (706)
. ...++|+|+++.++++...++.|.+||....+ ..... .....+.+++|+|+|++|+++..++
T Consensus 273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~----------~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK----------VVKTF-DTPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEEE-ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred C--CceEEECCCCCEEEEEECCCCeEEEEECCCCe----------EEEEE-ecCCCCCeEEEcCCCCEEEEEEccc
Confidence 3 25799999998666777789999999987652 22222 2345678999999999887776654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-23 Score=197.54 Aligned_cols=271 Identities=12% Similarity=0.104 Sum_probs=212.3
Q ss_pred ceeeEeeEeCCCCcEEEEEec-------CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 354 EEILDLKFLGEEEQYLAVATN-------IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+..+++.+ +++.++++.. ++.|.+||..+++....+..... +..+. ++++++.++++...++.|.+|
T Consensus 41 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~--~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK-PFGAT--INNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC-CCSEE--EETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC-cceEE--ECCCCCEEEEEecCCCEEEEE
Confidence 4566788888 4445555542 56899999999988777765433 34444 889999867777888999999
Q ss_pred eCCCceEEEEEeCCCcC---------eEEEEEecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeEEEeecCcc
Q 005254 427 DSESRCCVGVGTGHMGA---------VGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (706)
|..+++.+..+..+... +.+++|+|+++.++++. +.++.|.+||....+ .......+...
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~----------~~~~~~~~~~~ 186 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK----------LKTAIQNTGKM 186 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE----------EEEEECCCCTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc----------eEEEecCCCCc
Confidence 99999988877765432 68899999998555554 358899999987542 33333335556
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee----cCCcEEEEEEccCCCEEEEecC-CCcEEEEEcCCCceE
Q 005254 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSPVDQVVITASG-DKTIKIWSISDGSCL 571 (706)
Q Consensus 497 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 571 (706)
+.+++++|+|+++++++.++.|.+||+.+++....+.. +...+..++|+|+++++++++. ++.|.+||+.+++.+
T Consensus 187 ~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 88999999999999999999999999999988887764 4556888999999997776655 589999999999988
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
..+.... ...++|+|+|+++++++ .++.|.+||+.+++.+..+..+ ..+.+++|+||+++|+++..+
T Consensus 267 ~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 267 AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 8877543 25699999999776665 6899999999999998888654 478999999999977766655
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=230.08 Aligned_cols=208 Identities=13% Similarity=0.144 Sum_probs=150.7
Q ss_pred CCCcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCc---cEEEEEEccCCCEEEE
Q 005254 1 MASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSD---TITALALSPDDKLLFS 77 (706)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~---~i~~l~~s~~~~~l~s 77 (706)
|..+.++..|...-. . ....++|+|||++++.+.++.|++||+.+++....+.+|.. .|.+++|||||++||+
T Consensus 1 ~~~~~~~~~~~~~~~--~--~~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~ 76 (719)
T 1z68_A 1 MRALTLKDILNGTFS--Y--KTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYL 76 (719)
T ss_dssp CBCCCHHHHHHTTTC--C--CCCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEE
T ss_pred CCcccHHHHhcCccc--C--CCCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEE
Confidence 555566665553311 1 12369999999888777667999999999998777776544 4899999999999998
Q ss_pred Eec---------cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcE
Q 005254 78 SGH---------SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVV 147 (706)
Q Consensus 78 ~~~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v 147 (706)
++. ++.|++||+.+++.+.... ....+..++|||||++||++. ++.|++|++.+++..... .++...|
T Consensus 77 ~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v 154 (719)
T 1z68_A 77 ESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKI 154 (719)
T ss_dssp EEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTE
T ss_pred EecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe
Confidence 876 6899999999998732111 125688999999999999986 789999999888765432 2333323
Q ss_pred -----------------EEEEEcCCCCceEEEEEecCC----------------------------------eEEEEECC
Q 005254 148 -----------------SSILFHPDTDKSLLFSGSDDA----------------------------------TVRVWDLL 176 (706)
Q Consensus 148 -----------------~~~~~~~~~~~~~l~~~~~dg----------------------------------~i~vwd~~ 176 (706)
.+++|+|||+. |++++.|. .|++||+.
T Consensus 155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~--la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 155 FNGIPDWVYEEEMLATKYALWWSPNGKF--LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp EESSCCHHHHHHTTCSSCCEEECTTSSE--EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred EcccccceeeeecccCcccEEECCCCCE--EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 48999999987 77666442 78899998
Q ss_pred CCeeE---E-----EeecccceEEEEEEecCCCEEEEEeCC----CEEEEEe
Q 005254 177 AKKCV---A-----TLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWD 216 (706)
Q Consensus 177 ~~~~~---~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~ 216 (706)
+++.. . .+.+|...+..++|+||++++++.... ..|.+||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 87642 1 123577788999999998766664322 2355566
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=200.38 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=208.2
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcc--eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC----
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE--IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---- 440 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 440 (706)
++++++..++.|.+||+.+++....+..... .+..+. ++|+++.+++++..++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 4788889999999999999988877764332 355555 88999887788888899999999999888766532
Q ss_pred -CcCeEEEEEecCCCeEEEEec------------CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 441 -MGAVGAVAFSKKLQNFLVSGS------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 441 -~~~v~~~~~~~~~~~~l~~~~------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
...+..++|+|+++ .++++. .++.|.+||+.... ...... ....+.+++|+|+|+
T Consensus 80 ~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~-~~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 80 RVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS----------RRKAFE-APRQITMLAWARDGS 147 (337)
T ss_dssp EEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------EEEEEE-CCSSCCCEEECTTSS
T ss_pred ccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc----------EEEEEe-CCCCcceeEECCCCC
Confidence 22677899999998 555554 57999999987542 222222 345678899999999
Q ss_pred EEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC------------------------cEEEE
Q 005254 508 LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK------------------------TIKIW 563 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------~i~iw 563 (706)
+|+++ ++.|.+||+.+++....+..+... ..+.|+|+++.++..+.++ .|.+|
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence 88888 688999999999888777654411 1237899998776554332 46899
Q ss_pred EcCCCceE-EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 564 SISDGSCL-KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 564 d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
|+.+++.. ..+..+...+..++|+|||++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+||+++|++++.++
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCC
Confidence 99988774 2344466678899999999999988 799999999999988887643 4678999999999999999999
Q ss_pred cEEEEECCchhH
Q 005254 643 LVNLWHDSTAAE 654 (706)
Q Consensus 643 ~i~vw~~~~~~~ 654 (706)
.|.+||+.+++.
T Consensus 302 ~i~v~d~~~~~~ 313 (337)
T 1pby_B 302 DLAAYDAETLEK 313 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECcCCcE
Confidence 999999987754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=193.79 Aligned_cols=171 Identities=16% Similarity=0.172 Sum_probs=130.6
Q ss_pred CEEEEeeCC-eEEEEEccCCeEEEeecCCCc--cEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeecc-----C
Q 005254 32 SFIACACGE-SINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGH-----D 102 (706)
Q Consensus 32 ~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~--~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~-----~ 102 (706)
++++++..+ .|.+||+.+++.+..+..... .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 356666554 999999999998887764332 4789999999987654 556789999999999988877632 2
Q ss_pred CCeEEEEECCCCCEEEEec------------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 103 GPAIGMACHPSGGLLATAG------------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
..+..++|+|++++|+++. .++.|.+||+.+++.+..+.. ...+..++|+|+++. ++++ ++.|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~--l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSK--LYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSC--EEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCE--EEEe--CCeE
Confidence 2677899999999999885 579999999999988877764 556788999999887 5555 6889
Q ss_pred EEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 171 RVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
.+||+.+++....+..+... ..+.|+|+++.++..+.
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHE 193 (337)
T ss_dssp EEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCT
T ss_pred EEEECCCCcEeeeeeccccC-CCceeCCCccEEeeecc
Confidence 99999999887776544310 12267788776655443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-23 Score=197.83 Aligned_cols=270 Identities=12% Similarity=0.174 Sum_probs=190.2
Q ss_pred EEEEEecCCcEEEEeCC-Cc--eeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC--Cce--EEEEEeCC
Q 005254 368 YLAVATNIEQVQVYDLS-SM--SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE--SRC--CVGVGTGH 440 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~-~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~~ 440 (706)
++++...++.|.+|++. ++ +.... ..+...+.++. ++|+++.+++++..++.|.+|++. +++ .+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 44444778999999985 23 22322 33555666676 889998844444445999999987 444 33444444
Q ss_pred CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEE
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTAC 519 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~ 519 (706)
. .+..++|+|+++.+++++..++.|.+|++..+. ....... ......+.+++|+|+++++++++ .++.|.
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------PVGVVDV-VEGLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------EEEEEEE-ECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------ccccccc-ccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 3 889999999998555666668999999995211 0112222 22345688999999999888887 889999
Q ss_pred EEeCCC-ccEEE----EEee-cCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCC--Cce--EEEEeec------ccCEE
Q 005254 520 VWRLPD-LVSVV----TFRG-HKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISD--GSC--LKTFEGH------TSSVL 582 (706)
Q Consensus 520 i~d~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~--~~~--~~~~~~~------~~~i~ 582 (706)
+||+.+ ++... .+.. ....+..++|+|++++|+++ ..++.|.+|++.. ++. ...+... ...+.
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 999987 54432 2222 34578899999999977555 4789999999953 433 2233211 23567
Q ss_pred EEEEEeCCCEEEEEe-CCCCEEEEECC----CCeEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 005254 583 RASFLTRGAQIVSCG-ADGLVKLWTVR----TGECIATYDKHEDKIWALAVGKKTEMFATGG-SDALVNLWHDS 650 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~-~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~ 650 (706)
.++|+|+|++|+++. .++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.+.+|+++
T Consensus 235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 899999999887544 78999999998 3355556655554 88999999999888877 68999999664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=194.98 Aligned_cols=299 Identities=13% Similarity=0.151 Sum_probs=198.1
Q ss_pred CEEEE-ecCCCcEEEEECC-CC--eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC-CeEEEEECC--CCe--eEEEee
Q 005254 115 GLLAT-AGADRKVLVWDVD-GG--FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLL--AKK--CVATLD 185 (706)
Q Consensus 115 ~~l~~-~~~d~~i~vw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~--~~~~~~ 185 (706)
+++++ ++.++.|.+|+++ ++ +.+..+ .+...+.+++|+|+++. +++++.+ +.|.+|++. +++ .+..+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~--l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRY--LYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCE--EEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 34444 4779999999995 34 333333 47788999999999876 7777665 999999997 554 334444
Q ss_pred cccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 186 KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
.+. .+..++|+|++++|++++. ++.|.+|++.++......
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------------------- 122 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV-------------------------------------- 122 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE--------------------------------------
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc--------------------------------------
Confidence 433 7889999999998877765 788999987421100000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
T Consensus 123 -------------------------------------------------------------------------------- 122 (343)
T 1ri6_A 123 -------------------------------------------------------------------------------- 122 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
..+..+ ..+.++. ++|+++.++++...++.|.
T Consensus 123 ---------------------------------------------~~~~~~-~~~~~~~--~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 123 ---------------------------------------------DVVEGL-DGCHSAN--ISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp ---------------------------------------------EEECCC-TTBCCCE--ECTTSSEEEEEEGGGTEEE
T ss_pred ---------------------------------------------ccccCC-CCceEEE--ECCCCCEEEEecCCCCEEE
Confidence 000000 1122333 7788887555554899999
Q ss_pred EEeCCC-ceEEE----EEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe------e
Q 005254 425 LWDSES-RCCVG----VGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA------A 492 (706)
Q Consensus 425 i~d~~~-~~~~~----~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~------~ 492 (706)
+||+.+ ++... ... .....+..++|+|+++.+++++..++.+.+|++....... ....... .
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~------~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI------ECVQTLDMMPENFS 228 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC------EEEEEEECSCTTCC
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE------EEEeeccccCcccc
Confidence 999987 54432 222 2345788999999998666677789999999996422111 0111111 1
Q ss_pred cCcceEEEEEcCCCCEEEEee-CCCcEEEEeCC----CccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEc-
Q 005254 493 HGKDINSLAVAPNDSLVCTGS-QDRTACVWRLP----DLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSI- 565 (706)
Q Consensus 493 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~- 565 (706)
....+..++|+|+|++|+++. .++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.|.+|++
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 123567899999998887554 78999999998 3345555554444 88999999999888877 6899999955
Q ss_pred -CCCce--EEEEeecccCEEEEEEEeCCC
Q 005254 566 -SDGSC--LKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 566 -~~~~~--~~~~~~~~~~i~~~~~s~~~~ 591 (706)
.+++. +..+.. .....+++|.++.+
T Consensus 308 ~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 308 GEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp TTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 45543 344443 24566778877654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=198.32 Aligned_cols=255 Identities=11% Similarity=0.101 Sum_probs=197.1
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-ceEEEEEeCC-CcCeEEEEE
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-RCCVGVGTGH-MGAVGAVAF 449 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~v~~~~~ 449 (706)
...++.|++||+.+++.. .+..|...+.++. ++|+++. +++++ ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~--~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPN--WSPDGKY-LLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEE--ECTTSSE-EEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeE--ECCCCCE-EEEEc-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 345689999999988876 4455778888888 8899987 66655 78999999999 8777666555 367889999
Q ss_pred ecCCCeEEEEec--CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE-EeeCCCcEEEEeCC-C
Q 005254 450 SKKLQNFLVSGS--SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC-TGSQDRTACVWRLP-D 525 (706)
Q Consensus 450 ~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~d~~-~ 525 (706)
+|+++ ++++++ .++...+|.++.... ....+. ....+..++|+|+++.|+ ++..++.+++|++. .
T Consensus 93 spdg~-~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 93 SPDGA-LYAISDKVEFGKSAIYLLPSTGG---------TPRLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CTTSS-EEEEEECTTTSSCEEEEEETTCC---------CCEECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCCC-EEEEEEeCCCCcceEEEEECCCC---------ceEEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 99998 666666 345666766653221 111222 233488899999999887 77789999999863 2
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcC-CCceEEEEeecccCEEEEEEEeCCCEEEEEeCC----
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS-DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---- 599 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 599 (706)
......+..+...+.+++|+|++++|+.++ .++.+++|++. .+.....+..|...+..+.|+|+|++|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 334456667888999999999999887766 58999999986 566677777788889999999999999988876
Q ss_pred -------CCEEEEECCCCeE--EEEeccCCCcEEEEEEcCCCCEEEEEeCCC
Q 005254 600 -------GLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDA 642 (706)
Q Consensus 600 -------g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 642 (706)
+.|++||+.+++. +..+.+|...+.+++|+|++++|++++.|.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 444557888999999999999998877654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=220.13 Aligned_cols=358 Identities=10% Similarity=0.087 Sum_probs=232.4
Q ss_pred EEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEecC---------CCcEEEEECC
Q 005254 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAGA---------DRKVLVWDVD 132 (706)
Q Consensus 65 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~---------d~~i~vw~~~ 132 (706)
+++|+|||+++++ +.|+.|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999976655 4689999999999998877776644 4899999999999999876 6899999999
Q ss_pred CCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ecccceE-----------------EEE
Q 005254 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRV-----------------TSM 194 (706)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v-----------------~~~ 194 (706)
+++.+... .....+..++|+|||+. |+.+. ++.|++||+.+++..... .++...+ .++
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccce-ecCcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 99863111 12356889999999987 66664 789999999888765432 2232222 489
Q ss_pred EEecCCCEEEEEeCC-CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTLISAGRD-KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l~~~~~d-g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
+|+|||++|++++.| +.+.+|.+..... ....
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~----~~~~------------------------------------------- 207 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGD----EQYP------------------------------------------- 207 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCS----SSSC-------------------------------------------
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCC----CCCc-------------------------------------------
Confidence 999999999988754 3333443211000 0000
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 208 -------------------------------------------------------------------------------- 207 (719)
T 1z68_A 208 -------------------------------------------------------------------------------- 207 (719)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--------EeeeCCcceEEEeeeeeecCCCEEEEEeeCC----C
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--------YVLAGHSEIVLCLDTCALSSGKILIVTGSKD----N 421 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g 421 (706)
....+.|..... ......+.+||+.+++.. ..+.+|...+..+. ++|+++ ++++.... .
T Consensus 208 -~~~~~~yp~~g~-----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~SpD~~-~~~~~~~~~~~~~ 278 (719)
T 1z68_A 208 -RTINIPYPKAGA-----KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLT--WVTDER-VCLQWLKRVQNVS 278 (719)
T ss_dssp -EEEEEECCBTTS-----CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEE--ESSSSE-EEEEEEESSTTEE
T ss_pred -cceeecCCCCCC-----CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeE--EeCCCe-EEEEEeccccCeE
Confidence 000111100000 001135667777766542 12335777788887 888854 46654332 2
Q ss_pred cEEEEe----CCCceEEEEE----eCCCcCeE-----EEEEecCCCeEEE-EecCCCe--EEEEEecCCCCCCCcccccc
Q 005254 422 SVRLWD----SESRCCVGVG----TGHMGAVG-----AVAFSKKLQNFLV-SGSSDHT--IKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 422 ~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~ 485 (706)
.|.+|| ..+++..... ..+...+. .++|+|+|+.+++ +...+|. |.+|++....
T Consensus 279 ~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---------- 348 (719)
T 1z68_A 279 VLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---------- 348 (719)
T ss_dssp EEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----------
T ss_pred EEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----------
Confidence 488899 8887765544 35666666 7899999986555 3445664 5555544331
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCC--cc-EEEEEee----cCCcEEEEEEccCCCEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPD--LV-SVVTFRG----HKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~--~~-~~~~~~~----~~~~v~~~~~s~~~~~l~~ 553 (706)
...+..+...+..+.++ +++.++..+.+ +..++|.+.. +. ....+.. |...+..+.|+|++++++.
T Consensus 349 -~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 349 -AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp -CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred -eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence 22233345557777777 78777766654 7888888753 32 2233332 5567889999999987764
Q ss_pred e-cCC--CcEEEEEcCCCceEEEEe
Q 005254 554 A-SGD--KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 554 ~-~~d--g~i~iwd~~~~~~~~~~~ 575 (706)
. +.+ ..+.+||+.+++++..+.
T Consensus 427 ~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 427 VCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EcCCCCCCeEEEEECCCCCEEEEee
Confidence 3 333 468999998888766554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-22 Score=194.53 Aligned_cols=197 Identities=21% Similarity=0.144 Sum_probs=158.8
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCC-----------eEEE----eecCCCccEEEEEEccCCCEEE----EEeccC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNA-----------SIKS----TIEGGSDTITALALSPDDKLLF----SSGHSR 82 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~-----------~~~~----~l~~~~~~i~~l~~s~~~~~l~----s~~~d~ 82 (706)
...+++++++.++++++.+.+.+|+.... .... ..-.+...|++++|+|+|++|| +++.|+
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 45899999999999999888999876421 1110 0112566899999999999999 778899
Q ss_pred eEEEEECCCC--------e---EEEEeeccCCCeEEEEECCC-CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEE
Q 005254 83 EIRVWDLSTL--------K---CLRSWKGHDGPAIGMACHPS-GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSI 150 (706)
Q Consensus 83 ~i~iwd~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~ 150 (706)
.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++..+....+|...|.++
T Consensus 119 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v 198 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSV 198 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEE
T ss_pred eEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEE
Confidence 9999998765 2 24566779999999999998 8899999999999999999998777777899999999
Q ss_pred EEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEe-CCC------EEEEEe
Q 005254 151 LFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAG-RDK------VVNLWD 216 (706)
Q Consensus 151 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~-~dg------~i~~w~ 216 (706)
+|+|+++. |++|+.||.|++||.+ ++....+..| ...+.+++|++++.++++.+ .+| .+++|+
T Consensus 199 ~wspdg~~--lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~ 275 (434)
T 2oit_A 199 CWSPKGKQ--LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL 275 (434)
T ss_dssp EECTTSSC--EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred EEcCCCCE--EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence 99999887 9999999999999997 5555555433 34899999999887775543 332 489999
Q ss_pred CCCCc
Q 005254 217 LRDYS 221 (706)
Q Consensus 217 ~~~~~ 221 (706)
+....
T Consensus 276 l~~~~ 280 (434)
T 2oit_A 276 LPKKE 280 (434)
T ss_dssp CCCTT
T ss_pred eccCC
Confidence 98653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-21 Score=182.99 Aligned_cols=265 Identities=12% Similarity=0.092 Sum_probs=181.4
Q ss_pred CcEEEEeC--CCceeeE-eeeCCcceEEEeeeeeecCCCEEEEEeeC--CCcEEEEeCCCce--EEEEEeCCCcCeEEEE
Q 005254 376 EQVQVYDL--SSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSK--DNSVRLWDSESRC--CVGVGTGHMGAVGAVA 448 (706)
Q Consensus 376 ~~i~~~d~--~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~ 448 (706)
+.+.+|++ .+++... ....+...+..++ ++|+++ ++++... ++.|.+|++.+++ .+..+..+...+..++
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 45566554 4555433 2223334445555 788777 4555543 6899999997765 3444455677889999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee---------cCcceEEEEEcCCCCEEEEeeCCCcEE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------HGKDINSLAVAPNDSLVCTGSQDRTAC 519 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~s~~~~~l~~~~~dg~i~ 519 (706)
|+|+++.++++...++.+.+|++..... ......... ....+.+++|+|+|+++++...++.|.
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~ 165 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGA-------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVY 165 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSC-------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCC-------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEE
Confidence 9999984444444789999999964211 011111111 123478899999999666666788999
Q ss_pred EEeCC-CccEEE--EEee-cCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCC--Cce--EEEEeecc------cCEEEE
Q 005254 520 VWRLP-DLVSVV--TFRG-HKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISD--GSC--LKTFEGHT------SSVLRA 584 (706)
Q Consensus 520 i~d~~-~~~~~~--~~~~-~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~~~------~~i~~~ 584 (706)
+|++. +++... .+.. ....+..++|+|||++|++ ...++.|.+|++.. ++. +..+.... ..+..+
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 245 (347)
T 3hfq_A 166 VYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAI 245 (347)
T ss_dssp EEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEE
T ss_pred EEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeE
Confidence 99998 454332 2222 2336788999999996665 56788999999874 443 22333222 348889
Q ss_pred EEEeCCCEEE-EEeCCCCEEEEECC---CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 005254 585 SFLTRGAQIV-SCGADGLVKLWTVR---TGECIATYDKHEDKIWALAVGKKTEMFATGGSD-ALVNLWHDS 650 (706)
Q Consensus 585 ~~s~~~~~l~-~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~ 650 (706)
+|+|||++|+ +...++.|.+|++. +.+.+..+..+...+..++|+|||++|++++.+ +.+.+|+++
T Consensus 246 ~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 246 RLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9999999884 55568999999997 335666676777778999999999998887764 899999664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-22 Score=186.86 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=134.7
Q ss_pred CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeecc-CCCeEEEEECCCCCEE
Q 005254 40 ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGH-DGPAIGMACHPSGGLL 117 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l 117 (706)
+.|++||+.+++... +..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+||+++|
T Consensus 22 ~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp EEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred eeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 379999999988764 555889999999999999999986 77999999999 8877777666 3788999999999999
Q ss_pred EEec--CCCc--EEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CCeeEEEeecccceEE
Q 005254 118 ATAG--ADRK--VLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKHFSRVT 192 (706)
Q Consensus 118 ~~~~--~d~~--i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~ 192 (706)
++++ .++. |..|+..+++ ...+..+ ..+..++|+|+++. +++++..++.+.+|++. .......+..+...+.
T Consensus 100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND 176 (297)
T ss_dssp EEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE
T ss_pred EEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcceEcccCCCccc
Confidence 9988 3344 4445555555 3444433 34899999999875 34478889999999863 2334456667888999
Q ss_pred EEEEecCCCEEEEEe-CCCEEEEEeCC
Q 005254 193 SMAITSDGSTLISAG-RDKVVNLWDLR 218 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~-~dg~i~~w~~~ 218 (706)
+++|+|++++|+.++ .++.+.+|++.
T Consensus 177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceECCCCCEEEEEecCCCCccEEEEC
Confidence 999999999888766 47777777753
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-22 Score=204.67 Aligned_cols=271 Identities=8% Similarity=-0.024 Sum_probs=193.9
Q ss_pred CccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC---CCcEEEEECCC--
Q 005254 60 SDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA---DRKVLVWDVDG-- 133 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~vw~~~~-- 133 (706)
..+|.+++|+|||++||+++. +|++.||++.+++..+....+...+..++|||| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999877 999999999777665444433368999999999 77776654 45455655432
Q ss_pred -CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC---
Q 005254 134 -GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD--- 209 (706)
Q Consensus 134 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 209 (706)
+... .+... ..+...+|+|+++..++++++.++ +.+||+.+++.......+ . .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETT
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCC
Confidence 3222 33322 234467999998876677666666 459999988766555433 3 788999999999988766
Q ss_pred -CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 210 -KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 210 -g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
+.|++||+.+++..
T Consensus 174 ~~~i~~~d~~~g~~~----------------------------------------------------------------- 188 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR----------------------------------------------------------------- 188 (582)
T ss_dssp EEEEEEEETTTCCCE-----------------------------------------------------------------
T ss_pred CeEEEEEcCCCCCce-----------------------------------------------------------------
Confidence 56666665543311
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (582)
T 3o4h_A 189 -------------------------------------------------------------------------------- 188 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEEEeCCCcCeEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGA 446 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 446 (706)
.+..+...+..+. ++|+++. ++++..++ .|++||+.+++.. .+..+...+..
T Consensus 189 ----------------------~l~~~~~~~~~~~--~SpDG~~-l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 189 ----------------------VFDSGEGSFSSAS--ISPGMKV-TAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp ----------------------EECCSSCEEEEEE--ECTTSCE-EEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred ----------------------EeecCCCccccce--ECCCCCE-EEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 2223333444444 7888887 56777788 8999999988877 77777777777
Q ss_pred EE--------EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc-
Q 005254 447 VA--------FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT- 517 (706)
Q Consensus 447 ~~--------~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~- 517 (706)
++ |+|+| .++++++.++.+++|++ ++ ... .....+.+++|+ +++++++++.+..
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~----------~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GE----------RVE---APQGNHGRVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TE----------EEC---CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CC----------eec---cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence 77 99999 59999999999999998 21 111 233567899999 9999998887744
Q ss_pred --EEEEeCCC
Q 005254 518 --ACVWRLPD 525 (706)
Q Consensus 518 --i~i~d~~~ 525 (706)
+.+||..+
T Consensus 306 ~~l~~~d~~~ 315 (582)
T 3o4h_A 306 PRIVSLPSGE 315 (582)
T ss_dssp EEEEEETTCC
T ss_pred CeEEEEcCCC
Confidence 67777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9.3e-22 Score=203.67 Aligned_cols=271 Identities=12% Similarity=0.044 Sum_probs=200.3
Q ss_pred CceeeEeeEeCCCCcEEEEEec-CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC---CCcEEEEeC
Q 005254 353 NEEILDLKFLGEEEQYLAVATN-IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK---DNSVRLWDS 428 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~ 428 (706)
..++..++|++ +++.++.++. +|.+.+|++.+++.......+...+..+. ++|+ .++++++. +....+|.+
T Consensus 21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~--~spd--~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPH--YGVG--RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEEC--TTCS--EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCC-CCCeEEEEEccCCceeEEEEcCCCcEeeeccccccccccc--CCCC--eEEEEeccCCCCcceEEEEE
Confidence 34688888887 6666776665 99999999977666544444435777776 6666 44666654 444555543
Q ss_pred CC---ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC
Q 005254 429 ES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505 (706)
Q Consensus 429 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 505 (706)
.. +... .+.. .......+|+|+++..+++.+.++.+.+||+..+. ...+..+.. .+++|+||
T Consensus 96 ~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----------~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----------LRELARLPG--FGFVSDIR 160 (582)
T ss_dssp ETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----------EEEEEEESS--CEEEEEEE
T ss_pred eccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----------EEEeecCCC--ceEEECCC
Confidence 22 2222 3322 22345678999987666666666666699997652 222222333 78999999
Q ss_pred CCEEEEeeCC----CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC--cEEEEEcCCCceEEEEeeccc
Q 005254 506 DSLVCTGSQD----RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 506 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~ 579 (706)
|++|++++.+ +.|++||+.+++.. .+..|...+..++|||||+.|+++..++ .|++||+.+++.. .+..|..
T Consensus 161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~ 238 (582)
T 3o4h_A 161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK 238 (582)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS
T ss_pred CCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc
Confidence 9999988777 78999999888765 6677888899999999999999888888 8999999988887 7777776
Q ss_pred CEEEEE--------EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEE
Q 005254 580 SVLRAS--------FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL---VNLWH 648 (706)
Q Consensus 580 ~i~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~vw~ 648 (706)
.+..+. |+|||..+++++.|+.+++|++ |+.+. .+.+.+.+++|+ +++++++++.+.. +.+|+
T Consensus 239 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 666666 9999988999999999999999 77655 345788999999 9999998887754 66666
Q ss_pred CCc
Q 005254 649 DST 651 (706)
Q Consensus 649 ~~~ 651 (706)
...
T Consensus 313 ~~~ 315 (582)
T 3o4h_A 313 SGE 315 (582)
T ss_dssp TCC
T ss_pred CCC
Confidence 653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-20 Score=199.98 Aligned_cols=363 Identities=13% Similarity=0.087 Sum_probs=225.0
Q ss_pred cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC-----eEEEEECCCCCEEEEecCC---------CcEE
Q 005254 62 TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP-----AIGMACHPSGGLLATAGAD---------RKVL 127 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---------~~i~ 127 (706)
...+++|+|||++++++ |+.|++||+.+++....+.+|... ...++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35689999999999886 899999999999988888877643 2347899999999998865 5677
Q ss_pred EEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe-ecccceE---------------
Q 005254 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRV--------------- 191 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v--------------- 191 (706)
+||+.+++.. .+..|...+...+|||||+. |+.+ .++.|++|++.+++..+.. .++...+
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 9999999855 46668889999999999987 6666 5688999999888755422 2232222
Q ss_pred --EEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEE
Q 005254 192 --TSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 268 (706)
Q Consensus 192 --~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (706)
..+.|||||+.|+.+..|. .+.+|++....... ........+.+...|.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~-------------------------- 223 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGA-------------------------- 223 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTS--------------------------
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcC--------------------------
Confidence 3489999999999886544 36666642111000 0000011111111110
Q ss_pred EecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeE
Q 005254 269 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKR 348 (706)
Q Consensus 269 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (706)
T Consensus 224 -------------------------------------------------------------------------------- 223 (740)
T 4a5s_A 224 -------------------------------------------------------------------------------- 223 (740)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC---ce--eeEeee------CCcceEEEeeeeeecCCCEEEEEe
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS---MS--CSYVLA------GHSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
. .....+.+||+.+ +. ....+. ++...+..+. ++|+++.++...
T Consensus 224 ------------------~-----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--wspdg~~~~~~~ 278 (740)
T 4a5s_A 224 ------------------V-----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVT--WATQERISLQWL 278 (740)
T ss_dssp ------------------C-----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEE--EEETTEEEEEEE
T ss_pred ------------------c-----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEE--EeCCCeEEEEEe
Confidence 0 0012466677766 52 111222 3666777777 889888633333
Q ss_pred eC---CCcEEEEeCCCce----EE--EEE--eCCCcCeE-----EEEEecCCCeEE-EEecCCC--eEEEEEecCCCCCC
Q 005254 418 SK---DNSVRLWDSESRC----CV--GVG--TGHMGAVG-----AVAFSKKLQNFL-VSGSSDH--TIKVWSFDGLSDDA 478 (706)
Q Consensus 418 ~~---dg~i~i~d~~~~~----~~--~~~--~~~~~~v~-----~~~~~~~~~~~l-~~~~~d~--~i~i~~~~~~~~~~ 478 (706)
.. +..|.+||+.+++ +. ..+ ..+...+. ..+|+|||+.++ .....+| .|.+|++..+.
T Consensus 279 ~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--- 355 (740)
T 4a5s_A 279 RRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD--- 355 (740)
T ss_dssp ESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS---
T ss_pred CCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc---
Confidence 22 3379999998876 11 111 34444443 788999998655 3333444 56666665432
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEE--EeCCCccEEEEEee----cCCcEEEEEEccC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACV--WRLPDLVSVVTFRG----HKRGIWSVEFSPV 547 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i--~d~~~~~~~~~~~~----~~~~v~~~~~s~~ 547 (706)
...+......+..+.. +|++.++..+.. +...| .++..+.....+.. .........|||+
T Consensus 356 --------~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~d 426 (740)
T 4a5s_A 356 --------CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKE 426 (740)
T ss_dssp --------CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTT
T ss_pred --------eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCC
Confidence 2222233444555432 446555544432 33444 45544433323332 2356889999999
Q ss_pred CCEEEEecCC---CcEEEEEcCCCceEEEEe
Q 005254 548 DQVVITASGD---KTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 548 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 575 (706)
+++++..... ..+.+++..+++.+..+.
T Consensus 427 g~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 427 AKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp SSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 9987655433 468888988777666554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-21 Score=183.79 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=123.1
Q ss_pred EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEee
Q 005254 64 TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 64 ~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~ 141 (706)
+.++++++++++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346788899999999999999999999999988887543 2578999999998765 44568999999999999887776
Q ss_pred CCC------CcEEEEEEcCCCCceEEEEEecC------------CeEEEEECCCCee---EEEeecccceEEEEEEecCC
Q 005254 142 GHK------GVVSSILFHPDTDKSLLFSGSDD------------ATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 142 ~~~------~~v~~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~ 200 (706)
.+. ..+..++|+|+++. +++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKE--VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDG 159 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTS
T ss_pred cccccccccccccceEECCCCCE--EEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCC
Confidence 432 23788999999886 6666654 8999999988543 33333 33468899999999
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
+ +++++ +.|.+||..+++....++
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEEC
T ss_pred c-EEEcc--CcEEEEeCCCCceecccc
Confidence 9 66654 349999999887766554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-19 Score=174.20 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=125.4
Q ss_pred eEEEE--EccCCeEEE-eecCCCccEEEEEEccCCCEEEEEec---cCeEEEEECCCCe--EEEEeeccCCCeEEEEECC
Q 005254 41 SINIV--DLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGH---SREIRVWDLSTLK--CLRSWKGHDGPAIGMACHP 112 (706)
Q Consensus 41 ~i~i~--d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~---d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~ 112 (706)
.|.+| |..+++... ....+...+..++|+|||+ |++++. ++.|.+||+.+++ .+..+..+...+..++|+|
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp 95 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE 95 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC
Confidence 45555 555676543 2334556678899999999 555544 6899999998776 4555566778899999999
Q ss_pred CCCEEEEec-CCCcEEEEECC-CC--eEEEEeeC---------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC-CC
Q 005254 113 SGGLLATAG-ADRKVLVWDVD-GG--FCTHYFKG---------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AK 178 (706)
Q Consensus 113 ~~~~l~~~~-~d~~i~vw~~~-~~--~~~~~~~~---------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~ 178 (706)
|+++|++++ .++.|.+|++. ++ +.+..+.. +...+.+++|+|+++ ++++...++.|.+|++. ++
T Consensus 96 dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 96 ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTS
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCC
Confidence 999988887 67899999995 33 33333322 123488999999987 57777788999999998 45
Q ss_pred eeEE--Eeecc-cceEEEEEEecCCCEEEEE-eCCCEEEEEeCC
Q 005254 179 KCVA--TLDKH-FSRVTSMAITSDGSTLISA-GRDKVVNLWDLR 218 (706)
Q Consensus 179 ~~~~--~~~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~ 218 (706)
+... .+..+ ...+..++|+|||++++++ ..++.+.+|+++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 4332 22222 2367789999999977665 467888998865
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-20 Score=177.73 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=130.4
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc-ccc--ceeEEEeecCcceEEEEEcCCCCEEEEee-CCCc
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-MNL--KAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRT 517 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~ 517 (706)
..+.+++|+|+++.++++...++.|.+|++.......... ... ............+..++|+|||+++++++ .++.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 3468899999998666666778999999997543100000 000 00122333456678999999999888777 6899
Q ss_pred EEEEeCCCccE--EEEEee---cCCcEEEEEEccCCCEEEEecCC--CcEEEEEcC--CCc--eEEEEeecccCEEEEEE
Q 005254 518 ACVWRLPDLVS--VVTFRG---HKRGIWSVEFSPVDQVVITASGD--KTIKIWSIS--DGS--CLKTFEGHTSSVLRASF 586 (706)
Q Consensus 518 i~i~d~~~~~~--~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~i~~~~~ 586 (706)
|.+|++.+++. +..+.. +...+..++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 99999987654 222322 33457899999999998776654 889999995 444 3444443 456789999
Q ss_pred EeCCCEEEEEe-CCCCEEEE--ECCCCeEEEEec-cCCCcEEEEEEc
Q 005254 587 LTRGAQIVSCG-ADGLVKLW--TVRTGECIATYD-KHEDKIWALAVG 629 (706)
Q Consensus 587 s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~-~~~~~v~~~~~s 629 (706)
+|||++|++++ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99999998887 56889995 555777655432 345578888885
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-22 Score=193.03 Aligned_cols=222 Identities=11% Similarity=0.121 Sum_probs=168.3
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC---c--ccccceeEEEeecCc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE---Q--PMNLKAKAVVAAHGK 495 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 495 (706)
+.+++|+.... .....+..+++++++. ++++++.++ +++|+......... . ............+..
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 45777764321 2345678899999877 788888887 89988653211000 0 000001111234567
Q ss_pred ceEEEEEcCCCCEEE----EeeCCCcEEEEeCCCc--------c---EEEEEeecCCcEEEEEEccC-CCEEEEecCCCc
Q 005254 496 DINSLAVAPNDSLVC----TGSQDRTACVWRLPDL--------V---SVVTFRGHKRGIWSVEFSPV-DQVVITASGDKT 559 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~----~~~~dg~i~i~d~~~~--------~---~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~ 559 (706)
.|.+++|+|+|++|+ +++.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 899999999999999 7888999999998654 2 24556679999999999998 889999999999
Q ss_pred EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC-------CcEEEEEEcCCC
Q 005254 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKT 632 (706)
Q Consensus 560 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~ 632 (706)
|++||++++.......+|...|.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.++.|++++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 9999999987777777789999999999999999999999999999998 66666665442 389999999998
Q ss_pred CEEEE-EeCCCc------EEEEECCch
Q 005254 633 EMFAT-GGSDAL------VNLWHDSTA 652 (706)
Q Consensus 633 ~~l~~-~~~dg~------i~vw~~~~~ 652 (706)
.++++ ...||. +++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 88764 334433 899999864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=193.03 Aligned_cols=193 Identities=13% Similarity=0.128 Sum_probs=146.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc-----EEEEEEccCCCEEEEEecc---------CeEEEEEC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDT-----ITALALSPDDKLLFSSGHS---------REIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~-----i~~l~~s~~~~~l~s~~~d---------~~i~iwd~ 89 (706)
+++|+|||++++.+ ++.|.+||+.+++....+.+|... ...++|||||++|+.++.+ +.+.+||+
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 69999999999987 779999999999988888887643 2448899999999998775 66789999
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcE-----------------EEEE
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVV-----------------SSIL 151 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v-----------------~~~~ 151 (706)
++++.. .+..|...+...+|||||++||.+. ++.|++|++.+++.... ..++...+ ..+.
T Consensus 100 ~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~ 177 (740)
T 4a5s_A 100 NKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (740)
T ss_dssp TTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceE
Confidence 999865 4666788999999999999999985 68999999988875432 22333323 3589
Q ss_pred EcCCCCceEEEEEecC------------------------------------CeEEEEECCC---Ce--eEEEee-----
Q 005254 152 FHPDTDKSLLFSGSDD------------------------------------ATVRVWDLLA---KK--CVATLD----- 185 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~d------------------------------------g~i~vwd~~~---~~--~~~~~~----- 185 (706)
|||||+. |+.++.| ..|++||+.+ ++ ....+.
T Consensus 178 wSpDg~~--la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 178 WSPNGTF--LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp ECTTSSE--EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred ECCCCCE--EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 9999987 5554321 1588899988 73 223333
Q ss_pred -cccceEEEEEEecCCCEEEEEeC----CCEEEEEeCCCCc
Q 005254 186 -KHFSRVTSMAITSDGSTLISAGR----DKVVNLWDLRDYS 221 (706)
Q Consensus 186 -~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~w~~~~~~ 221 (706)
+|...+..++|+|||+.++.... +..|.+||+.+++
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 37778999999999986665532 2367777776554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-20 Score=177.64 Aligned_cols=274 Identities=10% Similarity=0.023 Sum_probs=193.0
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCc-ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC-
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS-EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM- 441 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 441 (706)
+++.+++++..++.|.+||+.+++....+..+. ..+..+. ++++++.++++...++.|.+||+.+++.+..+....
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 467788899999999999999998887776554 1344555 788888767777789999999999998887766432
Q ss_pred -----cCeEEEEEecCCCeEEEEecCC------------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 442 -----GAVGAVAFSKKLQNFLVSGSSD------------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 442 -----~~v~~~~~~~~~~~~l~~~~~d------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
..+..++|+|+++ ++++++.+ +.|.+||+..+.. ....... .+...+.+++|+|
T Consensus 87 ~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-------AKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp TTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------BCCSEEE-ECCSSCCCEEECT
T ss_pred cccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc-------cceeeec-cCCCcccceeECC
Confidence 3378899999998 56666654 8999999876321 0111222 2334688999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC------------------------cEEEEEEccCCCEEEEecCC-Cc
Q 005254 505 NDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------GIWSVEFSPVDQVVITASGD-KT 559 (706)
Q Consensus 505 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~~~~s~~~~~l~~~~~d-g~ 559 (706)
+|+ +++++ +.|.+||+.+++....+..+.. ....+++++++......... ..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 3499999999988877654320 34456777654221111001 11
Q ss_pred EEEEEcCCCce-EEEEeecccCEEEEEEEe-CCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEE
Q 005254 560 IKIWSISDGSC-LKTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 560 i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 637 (706)
+..+|..+++. ...+..+...+..++|+| ++++|+++ ++.|.+||+.+++.+..+..+ ..+.+++|+|++++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEE
Confidence 22244444432 112233556788999999 99999888 889999999999988887643 35678999999999998
Q ss_pred EeCCCcEEEEECCchhH
Q 005254 638 GGSDALVNLWHDSTAAE 654 (706)
Q Consensus 638 ~~~dg~i~vw~~~~~~~ 654 (706)
++.++.|.+||+.+++.
T Consensus 312 ~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 312 GGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp ESBSSEEEEEETTTTEE
T ss_pred ecCCCeEEEEeccccce
Confidence 88899999999987653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=174.80 Aligned_cols=267 Identities=7% Similarity=0.044 Sum_probs=178.7
Q ss_pred CCcEEEEeC--CCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCC--ceE--EEEEeCCCcCe
Q 005254 375 IEQVQVYDL--SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSES--RCC--VGVGTGHMGAV 444 (706)
Q Consensus 375 ~~~i~~~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~--~~~--~~~~~~~~~~v 444 (706)
++.|.+|.+ .+++.......+...+..+. ++|+++. +++++.+ +.+.+|++.. ++. +.....+....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~--~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p 102 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEVANPSYLI--PSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP 102 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEECSCCCSEE--ECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred CCCEEEEEEeCCCCCEEEeecccCCCCceEE--ECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence 457888765 44543322222444555555 8888887 5555554 7999998765 433 33344455667
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE--------eecCcceEEEEEcCCCCEEEEee-CC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV--------AAHGKDINSLAVAPNDSLVCTGS-QD 515 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~-~d 515 (706)
..+++ +++.++++...++.+.+|++......... ...... ..+...+.+++|+|+|+++++++ .+
T Consensus 103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 176 (361)
T 3scy_A 103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA----SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT 176 (361)
T ss_dssp EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC----SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc----ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC
Confidence 77777 66655555567899999999753211100 000000 01223457899999999776655 47
Q ss_pred CcEEEEeCCCcc-------E------EEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCce--EEEEee---
Q 005254 516 RTACVWRLPDLV-------S------VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC--LKTFEG--- 576 (706)
Q Consensus 516 g~i~i~d~~~~~-------~------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~--- 576 (706)
+.|.+|++.... . ......+...+..++|+|+|+++++++ .++.|.+||+.+++. +..+..
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~ 256 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV 256 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS
T ss_pred CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC
Confidence 899999887543 1 111223455678999999999887776 689999999987754 233322
Q ss_pred cccCEEEEEEEeCCCEEEEEeCC--CCEEEEECC--CCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005254 577 HTSSVLRASFLTRGAQIVSCGAD--GLVKLWTVR--TGE--CIATYDKHEDKIWALAVGKKTEMFATGG-SDALVNLWHD 649 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~ 649 (706)
+......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|++
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 23456799999999999776665 889999985 455 4445544 55678999999999988887 6789999766
Q ss_pred Cc
Q 005254 650 ST 651 (706)
Q Consensus 650 ~~ 651 (706)
+.
T Consensus 336 d~ 337 (361)
T 3scy_A 336 DQ 337 (361)
T ss_dssp CT
T ss_pred EC
Confidence 53
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=173.00 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=193.3
Q ss_pred CCCCEEEEec------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe----------cCCeEEEEEC
Q 005254 112 PSGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------DDATVRVWDL 175 (706)
Q Consensus 112 ~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~vwd~ 175 (706)
++++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||++. ++++. .++.|.+||.
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~--lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKK--IYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSE--EEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCE--EEEEEecccccccCCCCCEEEEEEC
Confidence 3566666643 3679999999999998888876555 8999999887 55544 3678999999
Q ss_pred CCCeeEEEeecc------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceee-ecCcceeeeEEeeCCCCCccc
Q 005254 176 LAKKCVATLDKH------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 176 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (706)
.+++.+..+... ......++++|||++|+++.. ++.|.+||+.+++.+.. ++..... .+
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v----------- 156 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SV----------- 156 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EE-----------
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-ee-----------
Confidence 999988877532 234667899999999998874 58899999988765544 3321110 00
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 157 -------------------------------------------------------------------------------- 156 (361)
T 2oiz_A 157 -------------------------------------------------------------------------------- 156 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCC-ceeeEeeeCCcceEEEeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTC 405 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~ 405 (706)
.+.|.....+++.+.+|.+.+++... ++.....
T Consensus 157 ---------------------------------~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~------------- 190 (361)
T 2oiz_A 157 ---------------------------------IPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS------------- 190 (361)
T ss_dssp ---------------------------------EECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE-------------
T ss_pred ---------------------------------EEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec-------------
Confidence 11111112223333333333333221 1100000
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
. ...+|+... .+ ..+.+++++. .++..+.++.+.++|+......
T Consensus 191 ------------~---~~~~~~~~~-----------~~-~~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~-------- 234 (361)
T 2oiz_A 191 ------------R---SKQMFSVKD-----------DP-IFIAPALDKD-KAHFVSYYGNVYSADFSGDEVK-------- 234 (361)
T ss_dssp ------------E---CCCCSCTTT-----------SC-BCSCCEECSS-EEEEEBTTSEEEEEECSSSSCE--------
T ss_pred ------------c---ccceEcCCC-----------Cc-eEEEecccCC-EEEEEeCCCeEEEEEecCCCce--------
Confidence 0 000111111 11 1222345555 3444557788999998643210
Q ss_pred eeEEEee------c----CcceEEEEEcCCCCEEEEeeC-----------CCcEEEEeCCCccEEEEEeecCCcEEEEEE
Q 005254 486 AKAVVAA------H----GKDINSLAVAPNDSLVCTGSQ-----------DRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544 (706)
Q Consensus 486 ~~~~~~~------~----~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 544 (706)
....... . ......++++|+++.++++.. .+.|.+||+.+++.+..+..+. +.+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE
Confidence 0000000 0 011223789999888877643 3479999999999999998877 899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCCC
Q 005254 545 SPVDQVVITASGDKTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
+|||++|++++. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 313 spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 313 DQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999998887 99999999999 99988866777888999999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=178.35 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=135.0
Q ss_pred EEEEEccCCeEEEeecCCCccEEE-----EEEccCCCEEEEEec-cC--eEEEEECCCCeEEEEeeccCCCeEEEEECCC
Q 005254 42 INIVDLSNASIKSTIEGGSDTITA-----LALSPDDKLLFSSGH-SR--EIRVWDLSTLKCLRSWKGHDGPAIGMACHPS 113 (706)
Q Consensus 42 i~i~d~~~~~~~~~l~~~~~~i~~-----l~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 113 (706)
...+|..++..+..+..|...... .+|||||++|+.++. ++ .|.+||+.+++......++...+..++|+||
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 344677888888888888776666 899999999998877 66 4889999999988777777666667889999
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEE--EcCCCCceEEEEE----------------------ecCCe
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL--FHPDTDKSLLFSG----------------------SDDAT 169 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~----------------------~~dg~ 169 (706)
+++|++++.++.|++||+.+++....+..+...+.... ++|++.. ++.. ..+..
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK--LVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE--EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe--eccccccCcccccccccchhhhhhccCCcce
Confidence 99999999889999999999988777776666665444 4788765 4422 23478
Q ss_pred EEEEECCCCeeEEEeecccceEEEEEEec-CCCEEEEEeCCC------EEEEEeCCC
Q 005254 170 VRVWDLLAKKCVATLDKHFSRVTSMAITS-DGSTLISAGRDK------VVNLWDLRD 219 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~~w~~~~ 219 (706)
|.+||+.+++... +..+...+..++|+| ||+.|+....++ .|.+++...
T Consensus 170 l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 170 LMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp EEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred EEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 9999999886544 445667789999999 999888776532 555555543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-19 Score=167.51 Aligned_cols=303 Identities=13% Similarity=0.095 Sum_probs=208.7
Q ss_pred CCCCEEEEee-------CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCC
Q 005254 29 SDGSFIACAC-------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLST 91 (706)
Q Consensus 29 ~dg~~l~~~~-------~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~ 91 (706)
+|++++++.. ++.|++||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4777777765 348999999999998888877666 899999999999886 367899999999
Q ss_pred CeEEEEeecc------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEE
Q 005254 92 LKCLRSWKGH------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLF 162 (706)
Q Consensus 92 ~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~ 162 (706)
++.+.++... ......++|+|||++|+++.. +++|.+||+.+++.+.. +.. .+ ...+.+.|++. ..++
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~-~~~~ 167 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRP-RSFM 167 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSS-SEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCC-eeEE
Confidence 9998887643 245678999999999998863 57899999999998877 553 22 23366788764 3477
Q ss_pred EEecCCeEEEEECCC-CeeEEEe------ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE
Q 005254 163 SGSDDATVRVWDLLA-KKCVATL------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV 235 (706)
Q Consensus 163 ~~~~dg~i~vwd~~~-~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 235 (706)
+.+.||.+.+|+... ++..... ..+..++ .+.+++++..++..+.++.+.++|+........-
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~--------- 237 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG--------- 237 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE---------
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc---------
Confidence 888999999999865 5544221 1122222 3344677878888888999999998644321100
Q ss_pred EeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 236 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
.|+..... ..... +.|.
T Consensus 238 ------------------------------------------~~~~~~~~-----------~~~~~----------~~p~ 254 (361)
T 2oiz_A 238 ------------------------------------------PWSLLNDE-----------DKAKN----------WVPG 254 (361)
T ss_dssp ------------------------------------------EEESCCHH-----------HHHTT----------CEEC
T ss_pred ------------------------------------------cccccCcc-----------ccccc----------cccC
Confidence 00000000 00000 0000
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe----------cCCcEEEEeCCC
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT----------NIEQVQVYDLSS 385 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~~~~i~~~d~~~ 385 (706)
+. ..+++.++....+++.. ..+.|.+||+.+
T Consensus 255 g~---------------------------------------~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 255 GY---------------------------------------NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp CS---------------------------------------SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred Ce---------------------------------------eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 00 01223332222222221 135799999999
Q ss_pred ceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc--eEEEEEeCCCcCeEEEEEecCCC
Q 005254 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR--CCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 386 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.+.+..+..+. ..++. ++|+++. +++++. +.|.+||..++ +.+..+.........++++|+|+
T Consensus 296 ~~~v~~i~~~~--p~~ia--~spdg~~-l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 296 KQRVARIPGRD--ALSMT--IDQQRNL-MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEEEECTT--CCEEE--EETTTTE-EEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcEEEEEecCC--eeEEE--ECCCCCE-EEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999988877 77777 8999997 666665 99999999999 99988877778889999999875
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-19 Score=171.49 Aligned_cols=264 Identities=10% Similarity=0.075 Sum_probs=180.1
Q ss_pred CcEEEEeC--CCceeeEe--ee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC-CceEEEEEeC-CCcCeEEEE
Q 005254 376 EQVQVYDL--SSMSCSYV--LA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE-SRCCVGVGTG-HMGAVGAVA 448 (706)
Q Consensus 376 ~~i~~~d~--~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~-~~~~v~~~~ 448 (706)
+.|.+|++ .+++.... .. .....+..++ ++|+++. +++++.+ .|.+|++. +++....... ..+.+..++
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~ 89 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRAND 89 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGC
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEE
Confidence 45666554 45544322 11 2223455565 7888887 6677766 99999987 7766543321 112356689
Q ss_pred EecCCCe-EEEEec-------------CCCeEEEEEecCCCCCCCcccccceeEEEe----ecCcceEEEEEcCCCCEEE
Q 005254 449 FSKKLQN-FLVSGS-------------SDHTIKVWSFDGLSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 449 ~~~~~~~-~l~~~~-------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~ 510 (706)
|+|+++. +++++. .++.+.+|++..... ...... .+...+.+++|+|||++|+
T Consensus 90 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 90 ADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK---------LEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp TTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC---------EEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred ECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc---------CcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 9999884 344553 689999999974210 111111 2456789999999999888
Q ss_pred EeeC-CCcEEEEeCC-CccEE--EEEe--ecCCcEEEEEEccCCCEEEEecC-CCcEEEEEcC--CCceE---EEEee--
Q 005254 511 TGSQ-DRTACVWRLP-DLVSV--VTFR--GHKRGIWSVEFSPVDQVVITASG-DKTIKIWSIS--DGSCL---KTFEG-- 576 (706)
Q Consensus 511 ~~~~-dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~---~~~~~-- 576 (706)
+++. ++.|++|++. +++.. ..+. .|...+..++|+|+|++|++++. ++.|.+|++. +++.. ..+..
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7764 6789999998 67543 2333 23567899999999999887765 7899999875 45543 22221
Q ss_pred -----ccc------CEEEEE-EEeCCCEEEEEeCCC------CEEEEECC-CCeEEE---EeccCCCcEEEEEEcC---C
Q 005254 577 -----HTS------SVLRAS-FLTRGAQIVSCGADG------LVKLWTVR-TGECIA---TYDKHEDKIWALAVGK---K 631 (706)
Q Consensus 577 -----~~~------~i~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~~~~s~---~ 631 (706)
|.. .+..++ |+|||++|+++..+. .|.+|++. +++... ....+...+..++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 121 478899 999999988776433 79999996 676543 2334555667899999 8
Q ss_pred CCEEEEEeCC-CcEEEEECCch
Q 005254 632 TEMFATGGSD-ALVNLWHDSTA 652 (706)
Q Consensus 632 ~~~l~~~~~d-g~i~vw~~~~~ 652 (706)
|++|++++.+ +.|.+|+++..
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETT
T ss_pred CCEEEEEEcCCCeEEEEEEchh
Confidence 9999988864 89999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-19 Score=172.52 Aligned_cols=120 Identities=20% Similarity=0.137 Sum_probs=95.8
Q ss_pred EEEEECCCCeEEEEeeccCCCeEE-----EEECCCCCEEEEecC-CC--cEEEEECCCCeEEEEeeCCCCcEEEEEEcCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGPAIG-----MACHPSGGLLATAGA-DR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPD 155 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (706)
...+|..++..+..+..|...... .+|||||++|++++. ++ .|.+||+.+++......++...+..++|+||
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 345678888888999888776666 889999999999887 56 4899999999888777767666667889999
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEE--EecCCCEEEE
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA--ITSDGSTLIS 205 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~ 205 (706)
++. |+.++.++.|++||+.+++.......+...+.... +++++++++.
T Consensus 92 g~~--l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 92 DDA--LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp SSE--EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred CCE--EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 987 88888889999999999987776666665554444 4889988775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=178.37 Aligned_cols=318 Identities=12% Similarity=0.013 Sum_probs=200.9
Q ss_pred EEEEECCCCeEEEEeeccCCC-----eEEEEECCCCCEEEEecCC---CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCC
Q 005254 84 IRVWDLSTLKCLRSWKGHDGP-----AIGMACHPSGGLLATAGAD---RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPD 155 (706)
Q Consensus 84 i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (706)
....|..+++.+..+..+... +..++|||||++|+..... ..|.+||+.+++......++......+.|+|+
T Consensus 12 ~~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 12 ETFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred heeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 345588888888887765443 7788999999998887543 47899999988865544333332334789999
Q ss_pred CCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE
Q 005254 156 TDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV 235 (706)
Q Consensus 156 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 235 (706)
++. |+..+.++.|++||+.+++.......+.. |+++|+.|+....++...+|..
T Consensus 92 g~~--l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~------------------ 145 (396)
T 3c5m_A 92 ERA--FFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL------------------ 145 (396)
T ss_dssp SSE--EEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE------------------
T ss_pred CCE--EEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc------------------
Confidence 887 88888888999999988876555443332 5556655555443332222210
Q ss_pred EeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccC
Q 005254 236 CAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315 (706)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCC
Q 005254 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH 395 (706)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~ 395 (706)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEeeeeeecCCCEEEEEe-----eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec-CCCeEEEEecCC------
Q 005254 396 SEIVLCLDTCALSSGKILIVTG-----SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK-KLQNFLVSGSSD------ 463 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------ 463 (706)
... +.|+++. ++.. ..+..|.+||+.+++..... .+...+..+.|+| +++ .++..+.+
T Consensus 146 -----~~~--~spdg~~-~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 146 -----KRD--WQPLTSW-EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVD 215 (396)
T ss_dssp -----GGG--CCCCCSH-HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE-EEEEEECSCSSSCS
T ss_pred -----ccc--cCCCCcc-eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCC-EEEEEecCCCCCCC
Confidence 000 2233332 1111 23446777777766654433 3556788899999 666 34433333
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEeec--CcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCccEEEEEeecC
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~ 536 (706)
..|.+|++.... ...+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++...... ..
T Consensus 216 ~~l~~~d~~~~~-----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~ 283 (396)
T 3c5m_A 216 ARMWLVNEDGSN-----------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP 283 (396)
T ss_dssp CCCEEEETTSCC-----------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC
T ss_pred ceEEEEECCCCc-----------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC
Confidence 357777775432 1111111 2357789999999988777544 449999998886544332 12
Q ss_pred CcEEEEEEcc-CCCEEEEec----------------CCCcEEEEEcCCCceEEEEeeccc-----------CEEEEEEEe
Q 005254 537 RGIWSVEFSP-VDQVVITAS----------------GDKTIKIWSISDGSCLKTFEGHTS-----------SVLRASFLT 588 (706)
Q Consensus 537 ~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~~~~~s~ 588 (706)
... +.|+| +|+++++++ .+..|++||+.+++.. .+..+.. .+..+.|+|
T Consensus 284 -~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~ 360 (396)
T 3c5m_A 284 -PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTP 360 (396)
T ss_dssp -SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECT
T ss_pred -CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEcc
Confidence 233 89999 999888754 3478999999887653 3444443 256679999
Q ss_pred CCCEEEEEeC-CCC--EEEEECCCCeE
Q 005254 589 RGAQIVSCGA-DGL--VKLWTVRTGEC 612 (706)
Q Consensus 589 ~~~~l~~~~~-dg~--i~iwd~~~~~~ 612 (706)
||++|+.++. ++. |+.+++.+++.
T Consensus 361 dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred CCCeEEEEecCCCCceEEEEEEccccc
Confidence 9999887765 454 44555555543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-16 Score=157.67 Aligned_cols=333 Identities=13% Similarity=0.039 Sum_probs=227.5
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC--CCeEEEEeeCCCCcE
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD--GGFCTHYFKGHKGVV 147 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v 147 (706)
|.+.++++...++.|.++|..+++.+.++.. ...+..++|||||+++++++.++.|.+||+. +++.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 4455666777899999999999999998874 3467799999999999999999999999995 8888888775 3456
Q ss_pred EEEEEc----CCCCceEEEEEecCCeEEEEECCCCeeEEEeecc----------cc-eEEEEEEecCCCEEE-EEeCCCE
Q 005254 148 SSILFH----PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH----------FS-RVTSMAITSDGSTLI-SAGRDKV 211 (706)
Q Consensus 148 ~~~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~-~v~~~~~~~~~~~l~-~~~~dg~ 211 (706)
..++|+ |||+. ++++...++.|.++|..+.+.+..+... .. .+..+..++++..++ .....|.
T Consensus 243 ~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 243 RSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 899999 68775 4445556799999999999988776422 11 466676776654333 3334566
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|.++|..+......
T Consensus 322 v~~vd~~~~~~~~v------------------------------------------------------------------ 335 (567)
T 1qks_A 322 ILLVDYTDLNNLKT------------------------------------------------------------------ 335 (567)
T ss_dssp EEEEETTCSSEEEE------------------------------------------------------------------
T ss_pred EEEEecCCCcccee------------------------------------------------------------------
Confidence 66666543210000
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 336 -------------------------------------------------------------------------------- 335 (567)
T 1qks_A 336 -------------------------------------------------------------------------------- 335 (567)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-----CCcCeEE
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-----HMGAVGA 446 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~ 446 (706)
. .+. .......+. +.+++++++++...++.|.++|..+++.+..... |.+.-..
T Consensus 336 ---------~---------~i~-~~~~~~d~~--~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 336 ---------T---------EIS-AERFLHDGG--LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp ---------E---------EEE-CCSSEEEEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred ---------e---------eee-ccccccCce--ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 0 000 001112223 7788888777777788999999999988776653 2221112
Q ss_pred EEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-------CCcE
Q 005254 447 VAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ-------DRTA 518 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i 518 (706)
.++|++..+.++.. .++.|.+++....... ...++....+......-..+..+|++++|.+... .++|
T Consensus 395 -~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v 470 (567)
T 1qks_A 395 -FVHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV 470 (567)
T ss_dssp -EEETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE
T ss_pred -eECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceE
Confidence 25787564555553 5689999998763211 1123344444444333355788999999998663 3589
Q ss_pred EEEeCCCc-----c-EEEEEee--------cCCcEEEEEEccCCCEEEEec-----CCCcEEEEEcCCCceEEEEee
Q 005254 519 CVWRLPDL-----V-SVVTFRG--------HKRGIWSVEFSPVDQVVITAS-----GDKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 519 ~i~d~~~~-----~-~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~ 576 (706)
.++|+.+. . ....+.- ....+..+.|+|+|+.+..+. .++.|.|+|.++++++..+..
T Consensus 471 ~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 471 AVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 99999876 2 1233321 245789999999999887763 378999999999999888874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-17 Score=161.57 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=164.1
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-----------CcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-----------MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
|+++.++++...++.+.++|..+.+.+..+... ...+..+..++++..+++....+|.|.++|.....
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~- 331 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN- 331 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS-
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc-
Confidence 355554555555566667776666666554321 22677888898888788888888999999986532
Q ss_pred CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCccEEEEEee-----cCCcEEEEEEccCCCE
Q 005254 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRG-----HKRGIWSVEFSPVDQV 550 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~ 550 (706)
. ..............+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..
T Consensus 332 ------~--~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 332 ------N--LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp ------E--EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred ------c--ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 0 1111223345567889999999887765 578899999999988776654 33222222 5787554
Q ss_pred E-EEec-CCCcEEEEEcCC-------CceEEEEeecccCEEEEEEEeCCCEEEEEeC-------CCCEEEEECCCC----
Q 005254 551 V-ITAS-GDKTIKIWSISD-------GSCLKTFEGHTSSVLRASFLTRGAQIVSCGA-------DGLVKLWTVRTG---- 610 (706)
Q Consensus 551 l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~---- 610 (706)
+ +++. .++.|.++|..+ .+.++++......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 4 4443 468999999987 6778888765444345788999999988663 359999999876
Q ss_pred -e-EEEEec--------cCCCcEEEEEEcCCCCEEEEEe-----CCCcEEEEECCchhHH
Q 005254 611 -E-CIATYD--------KHEDKIWALAVGKKTEMFATGG-----SDALVNLWHDSTAAER 655 (706)
Q Consensus 611 -~-~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~ 655 (706)
. ....+. .-...+..+.|+++|+++..+. .++.|.|+|..+.+..
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 2 112332 1245788999999999877653 3799999999887654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=165.82 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=163.8
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEcc-CCeEEEeec--CCCccEEEEEEccCCCE--EEEEe-------------ccCeE
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLS-NASIKSTIE--GGSDTITALALSPDDKL--LFSSG-------------HSREI 84 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~-~~~~~~~l~--~~~~~i~~l~~s~~~~~--l~s~~-------------~d~~i 84 (706)
..++|+|||++|+++..+.|.+|++. +++...... .+ +...+++|+|||++ ++++. .++.+
T Consensus 43 ~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred cEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 36999999999988887799999997 787654332 11 23566899999994 55553 68899
Q ss_pred EEEECC-CCeEEEEee----ccCCCeEEEEECCCCCEEEEec-CCCcEEEEECC-CCeEE--EEee--CCCCcEEEEEEc
Q 005254 85 RVWDLS-TLKCLRSWK----GHDGPAIGMACHPSGGLLATAG-ADRKVLVWDVD-GGFCT--HYFK--GHKGVVSSILFH 153 (706)
Q Consensus 85 ~iwd~~-~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~d~~i~vw~~~-~~~~~--~~~~--~~~~~v~~~~~~ 153 (706)
.+|++. +++....+. .+...+.+++|+|||++|+++. .++.|.+|+++ +++.. ..+. .|...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999997 566554444 2457899999999999888765 36789999998 77643 2333 246679999999
Q ss_pred CCCCceEEEEEe-cCCeEEEEECC--CCeeE---EEee-------cccc------eEEEEE-EecCCCEEEEEeCCC---
Q 005254 154 PDTDKSLLFSGS-DDATVRVWDLL--AKKCV---ATLD-------KHFS------RVTSMA-ITSDGSTLISAGRDK--- 210 (706)
Q Consensus 154 ~~~~~~~l~~~~-~dg~i~vwd~~--~~~~~---~~~~-------~~~~------~v~~~~-~~~~~~~l~~~~~dg--- 210 (706)
|+++. +++++ .++.|.+|++. +++.. ..+. +|.. .+..++ |+|||++|+++..+.
T Consensus 202 pdg~~--l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 202 PTGNY--LYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp TTSSE--EEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred CCCCE--EEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 99876 55555 47899999865 45542 1221 1222 588999 999999988776432
Q ss_pred ---EEEEEeCC-CCcceee---ec-CcceeeeEEeeC---CCCCcccccccccchhhhccccccceEEEEecC-CCeEEE
Q 005254 211 ---VVNLWDLR-DYSCKLT---VP-TYEMVEAVCAIP---PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRM 278 (706)
Q Consensus 211 ---~i~~w~~~-~~~~~~~---~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 278 (706)
.|.+|++. +++.... .+ .......++++| ++. .+++++. ++.|.+
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-----------------------~l~v~~~~~~~v~v 336 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-----------------------WMAITDDQEGWLEI 336 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-----------------------EEEEECSSSCEEEE
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-----------------------EEEEEEcCCCeEEE
Confidence 89999986 4443321 11 111233344444 332 5666655 589999
Q ss_pred EECCCC
Q 005254 279 WNADSA 284 (706)
Q Consensus 279 ~~~~~~ 284 (706)
|+.+..
T Consensus 337 ~~~~~~ 342 (365)
T 1jof_A 337 YRWKDE 342 (365)
T ss_dssp EEEETT
T ss_pred EEEchh
Confidence 998765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=169.37 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=185.1
Q ss_pred cceEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 23 GPLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
..++|||||++|++.... .|.+||+.+++......++......+.|||||++|+.++.++.|.+||+.+++.....
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~ 118 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY 118 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE
Confidence 468999999999988653 6999999998876554444333344889999999999999989999999998876666
Q ss_pred eccCCCeEE-------------------EEECCCCCEEEEe-----cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcC
Q 005254 99 KGHDGPAIG-------------------MACHPSGGLLATA-----GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154 (706)
Q Consensus 99 ~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (706)
..+...... +.|+|++++++.. ..+..|.+||+.+++..... .+...+..+.|+|
T Consensus 119 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp 197 (396)
T 3c5m_A 119 TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRP 197 (396)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEET
T ss_pred ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECC
Confidence 545443322 3567888877654 35678999999988765544 4677899999999
Q ss_pred -CCCceEEEEEecC------CeEEEEECCCCeeEEEeecc-cceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 155 -DTDKSLLFSGSDD------ATVRVWDLLAKKCVATLDKH-FSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 155 -~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
+++. ++..+.+ ..|.+||+.+++........ ...+..++|+|+|++|+.++.+ +.|++||+.+++
T Consensus 198 ~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 198 FDDST--VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp TEEEE--EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred CCCCE--EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 6655 3333332 46889998766543322221 3368889999999988777544 559999998876
Q ss_pred ceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccceEEEEec----------------CCCeEEEEECCCC
Q 005254 222 CKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG----------------ERGIVRMWNADSA 284 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~ 284 (706)
......... .. ..+++ ++. .++..+ .+..|++||..++
T Consensus 276 ~~~l~~~~~-~~-~~~s~~dg~-----------------------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 276 NEEVMVMPP-CS-HLMSNFDGS-----------------------LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEECCS-EE-EEEECSSSS-----------------------EEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred eEEeeeCCC-CC-CCccCCCCc-----------------------eEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 543322222 22 56666 664 233222 3578999999877
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee-CCceEEEEee
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA-DQQLLLYTTV 334 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 334 (706)
...........................++|+++.++..+. ++...+|...
T Consensus 331 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 331 SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 4322111110000000000112345678999998877664 4556666554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=181.54 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=113.4
Q ss_pred EeecCCCccEEEEEEccCCCEEEEE--eccCeEEEEECCCCeEEEEeeccCCCeE---------EEEEC--CCCCE-EEE
Q 005254 54 STIEGGSDTITALALSPDDKLLFSS--GHSREIRVWDLSTLKCLRSWKGHDGPAI---------GMACH--PSGGL-LAT 119 (706)
Q Consensus 54 ~~l~~~~~~i~~l~~s~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~~ 119 (706)
..+.+|...+..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |||++ |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3466788999999999887666766 5588899999755555667777766666 56565 99998 777
Q ss_pred ecC-CCcEEEEECC--C-CeEEEEeeC-----CCCcEEEEEEcCCCCceEEEEEecC----------CeEEEEECCC---
Q 005254 120 AGA-DRKVLVWDVD--G-GFCTHYFKG-----HKGVVSSILFHPDTDKSLLFSGSDD----------ATVRVWDLLA--- 177 (706)
Q Consensus 120 ~~~-d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~--- 177 (706)
++. +..|.+|++. + ++ ...+.. |...+..++|+|||+. |+.++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~--l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGE--VWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTE--EEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCE--EEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 654 5667777766 3 44 444544 6778999999999987 7766665 5899999987
Q ss_pred ---CeeEEEee-cccceEEEEEEecCCCEEEEEeCC
Q 005254 178 ---KKCVATLD-KHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 178 ---~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
++. ..+. .+...+..++|+|||++|+.++.+
T Consensus 174 ~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 174 ADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp TCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred ccCCce-eEEEecCCCcccCceECCCCCEEEEEECC
Confidence 554 4455 556788889999999999887754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-17 Score=152.65 Aligned_cols=241 Identities=11% Similarity=0.136 Sum_probs=182.7
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCC------------------------CcEEEEeCCCceEEEEEe-CCCcCeEEEEEec
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKD------------------------NSVRLWDSESRCCVGVGT-GHMGAVGAVAFSK 451 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~d------------------------g~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~ 451 (706)
+.+.+++ +.++++. +++...+ +.|.+||..+++.+.... .+......+++++
T Consensus 24 ~~v~~va--~d~~G~l-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVA--LDSKNNL-VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEE--ECTTCCE-EEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred CCceEEE--ECCCCCE-EEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 4466666 6677665 5555544 479999999888876654 3456789999999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE---------eecCcceEEEEEcC-CCCEEEEee-CCCcEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV---------AAHGKDINSLAVAP-NDSLVCTGS-QDRTACV 520 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~s~-~~~~l~~~~-~dg~i~i 520 (706)
++. ++++...++.|++|+...... ....+ ..+-.....++++| ++.++++.+ .++.|++
T Consensus 101 ~g~-l~v~d~~~~~v~~~~~~g~~~---------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 101 DGN-YWVTDVALHQVFKLDPHSKEG---------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp TSC-EEEEETTTTEEEEECTTCSSC---------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CCC-EEEEECCCCEEEEEeCCCCeE---------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 988 888888899999999754310 01111 12334678999999 788888876 6899999
Q ss_pred EeCCCccEEEEEeecC----------CcEEEEEEccC-CCEEEEecCCCcEEEEEcCCCceEEEEee--cccCEEEEEEE
Q 005254 521 WRLPDLVSVVTFRGHK----------RGIWSVEFSPV-DQVVITASGDKTIKIWSISDGSCLKTFEG--HTSSVLRASFL 587 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~----------~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s 587 (706)
|+ .+++.+..+.... .....++++|+ +.++++...++.|++||..+++.+..+.. +...+..++|+
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence 99 5677777665322 34889999998 77777878899999999988998888743 45678889999
Q ss_pred e------CCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 588 T------RGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 588 ~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
| +|+..++...+..|++||+.+++.+..+. .+......++++|+|.++++...++.|++|++..
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 8 33333333345589999999999998873 6777899999999998888888899999999864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-16 Score=153.63 Aligned_cols=168 Identities=19% Similarity=0.234 Sum_probs=117.2
Q ss_pred ceEEcCCCCEEEEee----------CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc---C--eEEEEE
Q 005254 24 PLVVSSDGSFIACAC----------GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS---R--EIRVWD 88 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~----------~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d---~--~i~iwd 88 (706)
..++ ||+.+++.. ...|.+||+.+++... + ..+.+++|||||++||.++.+ + .|.+||
T Consensus 19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~ 91 (347)
T 2gop_A 19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD 91 (347)
T ss_dssp EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence 3566 999998864 2369999999887543 4 567899999999999987653 2 488889
Q ss_pred CCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCC---------------------------CcEEEEECCCCeEEEEee
Q 005254 89 LSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGAD---------------------------RKVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 89 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------~~i~vw~~~~~~~~~~~~ 141 (706)
+.+++.......+ . +..++|+|||++|+.++.+ ..|.+||+.+++.+..+.
T Consensus 92 ~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 92 LETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp TTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred CCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 9888876655544 4 9999999999999988632 579999999988745555
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCC-------eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDA-------TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
. . .+..++|+|++ +++++..++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.++.+
T Consensus 170 ~-~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 170 K-P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp E-E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred C-C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 4 3 78899999987 466665432 334443334443 333333 444433 7777777666543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-16 Score=145.28 Aligned_cols=238 Identities=11% Similarity=0.165 Sum_probs=176.1
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEe-cCCCeEEEEec-CCCeE
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFS-KKLQNFLVSGS-SDHTI 466 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~l~~~~-~d~~i 466 (706)
+...+.++. +.+++.. +++...++.|.+||.. ++.+..+.. +...+..+++. +++. ++++.. .++.|
T Consensus 28 ~~~~p~~v~--~~~~g~l-~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~~i 102 (286)
T 1q7f_A 28 QFTEPSGVA--VNAQNDI-IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTHQI 102 (286)
T ss_dssp CBSCEEEEE--ECTTCCE-EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGCEE
T ss_pred ccCCCceEE--ECCCCCE-EEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCCEE
Confidence 444566666 6777764 7777888999999987 555555532 34578899995 5654 555553 38899
Q ss_pred EEEEecCCCCCCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVE 543 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~ 543 (706)
.+|+.... ....+. .+...+..++++|+|+++++...++.|.+||. +++.+..+. .+...+..++
T Consensus 103 ~~~d~~g~-----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYNQYGQ-----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EEECTTSC-----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred EEECCCCc-----------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 99984321 222221 23356889999999998888778899999996 455665554 3445789999
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCCEEEEEeCCC-CEEEEECCCCeEEEEeccCC
Q 005254 544 FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCGADG-LVKLWTVRTGECIATYDKHE 620 (706)
Q Consensus 544 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 620 (706)
++++++++++...++.|++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+||. +++.+..+..+.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 9999998888888999999997 56666666543 35788999999999888887776 9999995 677777776543
Q ss_pred C--cEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 621 D--KIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 621 ~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
. .+.+++++|+|+++++ +.|+.|++|++...
T Consensus 249 ~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 3 4789999999987776 67999999998653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=173.57 Aligned_cols=295 Identities=11% Similarity=0.038 Sum_probs=193.1
Q ss_pred ecccCceeeEeeEeCCCCcEEEEE--ecCCcEEEEeCCCceeeEeeeCCcceEE---------EeeeeeecCCCE-EEEE
Q 005254 349 LVGYNEEILDLKFLGEEEQYLAVA--TNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLDTCALSSGKI-LIVT 416 (706)
Q Consensus 349 ~~~~~~~v~~~~~~~~~~~~l~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~~~~-~l~~ 416 (706)
+.++...+..+++++ +..+++.. ..++...+|....+.....+..+...+. ...+..+|+++. ++++
T Consensus 19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 445667778888874 33444444 3467888888544444455555554433 232112388887 5666
Q ss_pred eeCCCcEEEEeCC--C-ceEEEEEeC-----CCcCeEEEEEecCCCeEEEEecCC----------CeEEEEEecCCCCCC
Q 005254 417 GSKDNSVRLWDSE--S-RCCVGVGTG-----HMGAVGAVAFSKKLQNFLVSGSSD----------HTIKVWSFDGLSDDA 478 (706)
Q Consensus 417 ~~~dg~i~i~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d----------~~i~i~~~~~~~~~~ 478 (706)
...+..|.+++.. . +. ...+.. +...+..++|+|+|+ .|+.++.+ ..|++|++.......
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5557778888876 3 43 334444 567889999999998 56666655 578999987610000
Q ss_pred CcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCC-Cc---cEEEEEeecCCcEEEEEEc
Q 005254 479 EQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLP-DL---VSVVTFRGHKRGIWSVEFS 545 (706)
Q Consensus 479 ~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~~~~s 545 (706)
......+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +.......|...+..++|+
T Consensus 176 -----~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 176 -----RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp -----GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred -----CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 00112222 344567889999999999987755 379999998 56 4444445567889999999
Q ss_pred cCCCEEEEecCCC--cEEEEEcCCCceEEEEeecccC--------EEEEEEEeCCCEEEEEeCCCCEEEE--ECCCCeEE
Q 005254 546 PVDQVVITASGDK--TIKIWSISDGSCLKTFEGHTSS--------VLRASFLTRGAQIVSCGADGLVKLW--TVRTGECI 613 (706)
Q Consensus 546 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~ 613 (706)
|||++++++..++ .|.+||+.+++.......+... +..++|+++++++++++. +.+++| |+.+++ +
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~ 328 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L 328 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E
Confidence 9999888888888 5666776666654443333222 567899999999999998 999999 665665 6
Q ss_pred EEeccCCCcEEEE-EEcCCCCEEEEEeCCCc--EEEEECCchh
Q 005254 614 ATYDKHEDKIWAL-AVGKKTEMFATGGSDAL--VNLWHDSTAA 653 (706)
Q Consensus 614 ~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~--i~vw~~~~~~ 653 (706)
..+..|...+..+ +++++.-++++++.+.. |.+|++.+++
T Consensus 329 ~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 329 VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7788888888877 55433333445555544 4445555543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.5e-12 Score=135.18 Aligned_cols=562 Identities=10% Similarity=0.061 Sum_probs=326.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecC-----CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-----GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~-----~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+|+-.++| +|-+|..+.+..||-.+-+....-.. ....|.+|...++|.+.+ ++.+ .+..||..+.+... +
T Consensus 47 ~I~qD~~G-~lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWi-gT~~-Gl~~yd~~~~~f~~-~ 122 (795)
T 4a2l_A 47 SIDQDKRG-NMWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWI-GTRD-GLSRYDEEKDIFQN-F 122 (795)
T ss_dssp EEEECTTS-CEEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEE-E
T ss_pred EEEEcCCC-CEEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEE-EeCC-chheeCCCCCeEEe-c
Confidence 57777787 55577778888898543222111000 135799999999987654 4445 48999988776433 2
Q ss_pred ecc-CC---CeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC-CCc-EEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 99 KGH-DG---PAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH-KGV-VSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 99 ~~~-~~---~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
... .. .|.++...+++.+.+.. . +.|..||.++++.......+ ... |.++...+++. +..++.++.|..
T Consensus 123 ~~~~~~~~~~i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~ 197 (795)
T 4a2l_A 123 FYEKNGKHLQVNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYT 197 (795)
T ss_dssp CCEETTEECCCCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTE---EEEEESSSCEEE
T ss_pred cccccCCCceEEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCC---EEEEECCCCEEE
Confidence 211 11 28889888888766544 3 45899998877643321111 112 88888877654 555776555999
Q ss_pred EECCCCeeEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCCCC
Q 005254 173 WDLLAKKCVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSA 243 (706)
Q Consensus 173 wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 243 (706)
|+..+++..... ..+...|.++...+++. |..++.++-+..|+..+.+....... ...+.++...+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-- 274 (795)
T 4a2l_A 198 YSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-- 274 (795)
T ss_dssp EETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS--
T ss_pred EeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC--
Confidence 998776644321 12345688888888775 55555444488899877553322111 1223333333333
Q ss_pred cccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEe
Q 005254 244 FDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323 (706)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 323 (706)
.+..+... -|..|+..++.......... ....-....+.++...++ ..+.+++
T Consensus 275 ----------------------~lWigt~~-Gl~~~~~~~~~~~~~~~~~~---~~~~l~~~~i~~i~~D~~-g~lWigt 327 (795)
T 4a2l_A 275 ----------------------RLWIGTFN-DLNIYHEGTDSFASYSSNPV---ENGSLSQRSVRSIFMDSQ-GGMWLGT 327 (795)
T ss_dssp ----------------------CEEEEESS-CEEEEETTTTEEEEECCCTT---STTSCSSSCEEEEEECTT-SCEEEEE
T ss_pred ----------------------CEEEEeCC-hhheEcCCCCeEEEEecCCC---CCCCCCCCcEEEEEEeCC-cCEEEEE
Confidence 34444444 47888887765433221110 001112344556555554 4577788
Q ss_pred eCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC--------C
Q 005254 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG--------H 395 (706)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~--------~ 395 (706)
.++-+..++.....-....... ....-....|.++... ....+-+++.++.+..|+..++........ .
T Consensus 328 ~~~Gl~~~~~~~~~~~~~~~~~-~~~~l~~~~V~~i~~d--~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 328 YFGGLNYYHPIRNRFKNIRNIP-YKNSLSDNVVSCIVED--KDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp SSSCEEEECGGGGSSEEECCCT-TSSSCSCSSEEEEEEC--TTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred CCCCeEEeCCCcccceEEcCCC-CCCCCCCCeeEEEEEC--CCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 7777888765433211100000 0000123346666553 344566788888899999887655433211 2
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
...|.++. ..+++.. +..|+.++-+..+|..+++...... .....|.++...+++. |..|+.+ -+..|+.
T Consensus 405 ~~~v~~i~--~d~~g~~-lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~~-Gl~~~~~ 478 (795)
T 4a2l_A 405 SNNIKAVY--VDEKKSL-VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN--LWLGTLS-ALVRFNP 478 (795)
T ss_dssp CSCEEEEE--EETTTTE-EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--EEEEESS-CEEEEET
T ss_pred CccEEEEE--EcCCCCE-EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--EEEEecC-ceeEEeC
Confidence 34577765 5566663 4556677779999998876544322 2346788998888876 4444444 4788886
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe-------ecCCcEEEEEE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR-------GHKRGIWSVEF 544 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~ 544 (706)
........... ..........|.++...++|.+.+.. . +-+..||..+++. .+. .....|.++..
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~ 550 (795)
T 4a2l_A 479 EQRSFTTIEKE----KDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYE 550 (795)
T ss_dssp TTTEEEECCBC----TTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred CCCeEEEcccc----ccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEE
Confidence 54310000000 00001123568899999988766644 4 4588898876654 332 13457899999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCceEEEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccC-
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKH- 619 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 619 (706)
.++|.+.+... .| +..||..+++.. .+.. ....|.++...++|++.+++ . +-|..||..+++.. .+...
T Consensus 551 d~~g~lWigT~-~G-l~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~d 624 (795)
T 4a2l_A 551 ASNGIIWVGTR-EG-FYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESD 624 (795)
T ss_dssp CTTSCEEEEES-SC-EEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGG
T ss_pred CCCCCEEEEeC-CC-ceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcC
Confidence 99888665543 45 889998766443 3322 13468888888888766655 4 44888998877643 34322
Q ss_pred ---CCcE--EEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 620 ---EDKI--WALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 620 ---~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
...+ .++...++|++.+ |+.+| +..++.
T Consensus 625 Gl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p 657 (795)
T 4a2l_A 625 GLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRP 657 (795)
T ss_dssp TCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECG
T ss_pred CCccccCccCceeECCCCeEEE-ecCCc-eEEEcH
Confidence 1222 4677788887555 66677 455553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-16 Score=151.22 Aligned_cols=235 Identities=13% Similarity=0.195 Sum_probs=178.1
Q ss_pred ceEEcCCCCEEEEeeCC-------------------------eEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------------------SINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFS 77 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------------------~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s 77 (706)
+|+++|+|+++++..++ .|.+||..+++.+..+. ++-.....++++|+|+++++
T Consensus 28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~ 107 (329)
T 3fvz_A 28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVT 107 (329)
T ss_dssp EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEE
T ss_pred EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEE
Confidence 59999999999888776 59999999898876654 44567899999999998888
Q ss_pred EeccCeEEEEECCCCe-EEEEe---------eccCCCeEEEEECC-CCCEEEEec-CCCcEEEEECCCCeEEEEeeCC--
Q 005254 78 SGHSREIRVWDLSTLK-CLRSW---------KGHDGPAIGMACHP-SGGLLATAG-ADRKVLVWDVDGGFCTHYFKGH-- 143 (706)
Q Consensus 78 ~~~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~s~-~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~-- 143 (706)
...++.|++||..... .+..+ .++-.....++|+| ++.++++.+ .++.|++|+ .+++.+..+...
T Consensus 108 d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~ 186 (329)
T 3fvz_A 108 DVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESS 186 (329)
T ss_dssp ETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECC
T ss_pred ECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCC
Confidence 8888999999986542 45555 23445789999999 788888876 689999999 567666666422
Q ss_pred --------CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEee--cccceEEEEEEec------CCCEEEEEe
Q 005254 144 --------KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITS------DGSTLISAG 207 (706)
Q Consensus 144 --------~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~ 207 (706)
-..+..++++|++. .++++...++.|++||..+++.+..+. .+...+..++|+| +|+..++..
T Consensus 187 ~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 187 GSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQ 265 (329)
T ss_dssp SSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCS
T ss_pred CCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccC
Confidence 23489999999733 357777788999999998899888773 4556788999999 333222233
Q ss_pred CCCEEEEEeCCCCcceeeec----CcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 208 RDKVVNLWDLRDYSCKLTVP----TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 208 ~dg~i~~w~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
.+..|++|+..+++.+..+. .......+++.+++. .+++...++.|+.|+...
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~-----------------------lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-----------------------VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE-----------------------EEEEESSSCCEEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC-----------------------EEEEECCCCEEEEEeCCc
Confidence 45589999999998887763 233466777777763 577778888999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-15 Score=138.70 Aligned_cols=230 Identities=12% Similarity=0.215 Sum_probs=168.6
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCCeEEEeec------CCCccEEEEEE-ccCCCEEEEEec-cCeEEEEECCCCe
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNASIKSTIE------GGSDTITALAL-SPDDKLLFSSGH-SREIRVWDLSTLK 93 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~~l~------~~~~~i~~l~~-s~~~~~l~s~~~-d~~i~iwd~~~~~ 93 (706)
.+++++++|+++++... +.|.+||.. ++.+..+. +|...+.++++ .++++++++... ++.|.+|| .+++
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 37999999998777654 489999976 55555553 24467899999 477776666643 88999999 6777
Q ss_pred EEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee--CCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 94 CLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
.+..+.. +...+..++++|+++++++...++.|.+||.+ ++.+..+. .+...+..++++|+++ ++++...++.|
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i 187 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE--IFISDNRAHCV 187 (286)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE--EEEEEGGGTEE
T ss_pred EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC--EEEEECCCCEE
Confidence 7777643 44678999999999988887778999999965 55555554 3556789999999865 46777778999
Q ss_pred EEEECCCCeeEEEeecc--cceEEEEEEecCCCEEEEEeCCC-EEEEEeCCCCcceeeecCcc---eeeeEEeeCCCCCc
Q 005254 171 RVWDLLAKKCVATLDKH--FSRVTSMAITSDGSTLISAGRDK-VVNLWDLRDYSCKLTVPTYE---MVEAVCAIPPGSAF 244 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 244 (706)
++||. +++.+..+..+ ...+..++++++|+++++...++ .|.+|+.. ++.+..+.... ....+++.+++.
T Consensus 188 ~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~-- 263 (286)
T 1q7f_A 188 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGS-- 263 (286)
T ss_dssp EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTE--
T ss_pred EEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCc--
Confidence 99997 55666666433 35789999999998888777775 99999954 44444443321 244666666652
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
.+++ +.++.|++|+...
T Consensus 264 ---------------------l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 264 ---------------------VVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ---------------------EEEE-ETTTEEEEEECSC
T ss_pred ---------------------EEEE-CCCCeEEEEEccc
Confidence 3444 6789999998754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-15 Score=157.65 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=133.0
Q ss_pred CCCCEEEEeeCC------eEEEEEccCCeEEEee------cCCCccEEEEEEccCCCEEEEEeccC-----eEEEEECCC
Q 005254 29 SDGSFIACACGE------SINIVDLSNASIKSTI------EGGSDTITALALSPDDKLLFSSGHSR-----EIRVWDLST 91 (706)
Q Consensus 29 ~dg~~l~~~~~~------~i~i~d~~~~~~~~~l------~~~~~~i~~l~~s~~~~~l~s~~~d~-----~i~iwd~~~ 91 (706)
|||+++++.... .|.+.+..+++....+ .+|...+..++|||||++||.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 899999887632 3555555555543322 23445789999999999999775543 899999999
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc----------------EEEEECCCCe----EEEEeeCCCCcEEEEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK----------------VLVWDVDGGF----CTHYFKGHKGVVSSIL 151 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~----------------i~vw~~~~~~----~~~~~~~~~~~v~~~~ 151 (706)
++.+.....+ ..+..++|+|||+.|+.++.++. |++|++.+++ .+.....|...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9887643322 23678999999999999887665 9999998875 2223233556688999
Q ss_pred EcCCCCceEEEEEec-----CCeEEEEECCC------Ce-eEEEeecccceEEEEEEecCCCEEEEEeCC----CEEEEE
Q 005254 152 FHPDTDKSLLFSGSD-----DATVRVWDLLA------KK-CVATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLW 215 (706)
Q Consensus 152 ~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w 215 (706)
|+||++. |+..+. +..|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.. +.|.+|
T Consensus 240 ~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 240 LSDDGRY--VLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp ECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EcCCCCE--EEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 9999987 444433 57899999976 43 35556556555544 488899888777643 357777
Q ss_pred eCCCC
Q 005254 216 DLRDY 220 (706)
Q Consensus 216 ~~~~~ 220 (706)
++.++
T Consensus 317 d~~~~ 321 (710)
T 2xdw_A 317 DFTDP 321 (710)
T ss_dssp ETTSC
T ss_pred eCCCC
Confidence 77654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-15 Score=140.09 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=173.7
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
.+.....++. +.++++.+++++..++.|..|+..++ ...+..+...+.++++++++. ++++...++.|.+|+...
T Consensus 25 ~~~~~~eg~~--~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 25 DGFTWTEGPV--YVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPG 99 (296)
T ss_dssp CCCSSEEEEE--EEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTT
T ss_pred cCCccccCCe--EeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCC
Confidence 3344455555 88999866888899999999999987 566667778899999999987 677766778999999865
Q ss_pred CCCCCCcccccceeEEEe----ecCcceEEEEEcCCCCEEEE----ee-------------CCCcEEEEeCCCccEEEEE
Q 005254 474 LSDDAEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCT----GS-------------QDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~ 532 (706)
+. ...... .....+..++++|+|+++++ |+ ..+.|..++.. ++ ...+
T Consensus 100 g~----------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 100 GE----------WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp CC----------EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred Cc----------EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 42 111111 11234678999999998887 33 13456666654 43 3445
Q ss_pred eecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC-CCce---EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 533 RGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS-DGSC---LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 533 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
..+......++|+|+++.|++.+.++.|++|++. +++. ...+..+...+..++++++|+++++. ++.|.+||..
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 5566778999999999999777888999999996 4554 23333344566789999999876666 7889999986
Q ss_pred CCeEEEEeccCCCcEEEEEE-cCCCCEEEEEeCCCcEEEEECCchh
Q 005254 609 TGECIATYDKHEDKIWALAV-GKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 609 ~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
++.+..+..+.. +++++| +|+++.|.+++.++ +.-++..+..
T Consensus 246 -g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 246 -GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG 288 (296)
T ss_dssp -SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred -CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence 888888887777 899999 68999888888764 4445555443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-15 Score=144.47 Aligned_cols=242 Identities=10% Similarity=0.101 Sum_probs=164.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC--C--cEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD--N--SVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
++.|.+||+.+++.... ..+..+. ++|+++.++++...+ + .|.+|++.+++.......+ . +..++|+
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEEC
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeEC
Confidence 46789999988765433 3455555 889999844444332 3 4888899888766655443 3 9999999
Q ss_pred cCCCeEEEEecC--------------------------CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 451 KKLQNFLVSGSS--------------------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 451 ~~~~~~l~~~~~--------------------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
|+++.++++... ...|.+|++..+. ....+.. . .+..++|+|
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~----------~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE----------VIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE----------EEEEEEE-E-TTCEEEEET
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe----------EEeeecC-C-CcccccCCC
Confidence 999854444322 3568888876542 1122222 2 788999999
Q ss_pred CCCEEEEeeCCC-------cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC--------CcEEEEEcCCCc
Q 005254 505 NDSLVCTGSQDR-------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD--------KTIKIWSISDGS 569 (706)
Q Consensus 505 ~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~ 569 (706)
|| +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+|++|+.++.+ ..|.+|| +++
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~ 253 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE 253 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC
T ss_pred Ce-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc
Confidence 99 777776542 33444443444 3444444 555544 9999988877654 3688888 565
Q ss_pred eEEEEeecccCEEE-EEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcE-EEE
Q 005254 570 CLKTFEGHTSSVLR-ASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALV-NLW 647 (706)
Q Consensus 570 ~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i-~vw 647 (706)
.......+...+.. +.|+ |+ ++++++.++.+++| +.+++.... ..+...|.+++|+| .++++++.++.. .+|
T Consensus 254 ~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 254 VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 54444455667876 8999 88 88999999999999 877766444 34578899999999 677777777765 788
Q ss_pred ECC
Q 005254 648 HDS 650 (706)
Q Consensus 648 ~~~ 650 (706)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-15 Score=141.17 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=181.4
Q ss_pred eeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE
Q 005254 356 ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG 435 (706)
Q Consensus 356 v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 435 (706)
+..+.|.+. ...++....++.++.| .......+..+...+.++. +.++++ +++++..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEE
T ss_pred cceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcE--ECCCCC-EEEEECCCCEEEEEeCCCCcEEE
Confidence 445555543 3333333556777777 3344555666666667776 677776 47778889999999999887766
Q ss_pred EEeCCCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcCCCCEE
Q 005254 436 VGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l 509 (706)
....+...+.+++++++++ ++++...+ +.|.+||...... .... ......+..++++|+|+++
T Consensus 81 ~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL----------QDIIEDLSTAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp EEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC----------EEEECSSSSCCCEEEEEECTTSCEE
T ss_pred EeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEE----------EEEEccCccCCcccceEECCCCCEE
Confidence 5545677899999999987 66665555 6899998765421 1111 1234568899999999887
Q ss_pred EEeeC------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-EecCCCcEEEEEcCC-CceEEEE-------
Q 005254 510 CTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISD-GSCLKTF------- 574 (706)
Q Consensus 510 ~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~-~~~~~~~------- 574 (706)
++... .+.|..+|..+++... +..+...+..++|+|+++.|+ +...++.|.+||+.+ +..+..+
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~ 228 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY 228 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred EEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence 76653 3556677765544433 333445678999999998664 445678999999964 3333221
Q ss_pred -eecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC------cEEEEEEcCCCCEEEEEeCC
Q 005254 575 -EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED------KIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 575 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~~d 641 (706)
.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 229 ~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 229 FTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp CCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111 36778999999998888878899999998 5777777754433 68899999998777655554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-11 Score=130.77 Aligned_cols=524 Identities=10% Similarity=0.079 Sum_probs=301.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC-Cc---cEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG-SD---TITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~-~~---~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
+|...++|.+.+ ++.+.+..||..+.+... +... .. .|.++...++|.+.+. +. +.|..||.++++......
T Consensus 92 ~i~~d~~g~lWi-gT~~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~ 167 (795)
T 4a2l_A 92 IVKTDSQGRVWI-GTRDGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSF 167 (795)
T ss_dssp EEEECTTSCEEE-EESSCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSS
T ss_pred EEEECCCCCEEE-EeCCchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccC
Confidence 577788887665 445679999988776543 2211 11 1889999999876654 34 458999988766433211
Q ss_pred cc-CCC-eEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 100 GH-DGP-AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF-KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 100 ~~-~~~-v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
.+ ... |.++...+++.+.+ ++.++.|..|+..+++..... ..+...|.++...+++. +..|+.++-+..||..
T Consensus 168 ~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~ 243 (795)
T 4a2l_A 168 STAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR---IWVATEGAGLFLINPK 243 (795)
T ss_dssp CHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE---EEEEEBSSCEEEEETT
T ss_pred CCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC---EEEEECCCCeEEEeCC
Confidence 11 123 88898888886555 555445999998877654332 12356788888877654 5556655459999987
Q ss_pred CCeeEEEeec-------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCC
Q 005254 177 AKKCVATLDK-------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPG 241 (706)
Q Consensus 177 ~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 241 (706)
+++....... ....|.++...++|. |..|+.+| |.+|+..+......... ...+.++....++
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 244 TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp TTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS
T ss_pred CCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc
Confidence 7665433221 135699999988886 55555554 88899876654322111 1123333333333
Q ss_pred CCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEE
Q 005254 242 SAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321 (706)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 321 (706)
.+..++.++-|..++.............. ...-....+.++...++ ..+.+
T Consensus 322 ------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~~----~~~l~~~~V~~i~~d~~-g~lWi 372 (795)
T 4a2l_A 322 ------------------------GMWLGTYFGGLNYYHPIRNRFKNIRNIPY----KNSLSDNVVSCIVEDKD-KNLWI 372 (795)
T ss_dssp ------------------------CEEEEESSSCEEEECGGGGSSEEECCCTT----SSSCSCSSEEEEEECTT-SCEEE
T ss_pred ------------------------CEEEEECCCCeEEeCCCcccceEEcCCCC----CCCCCCCeeEEEEECCC-CCEEE
Confidence 35556666667777765443221111000 01112334555555444 45777
Q ss_pred EeeCCceEEEEeeeccccceeeEEeeEe-cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee----CCc
Q 005254 322 VTADQQLLLYTTVEVPEKKMELILSKRL-VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHS 396 (706)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~ 396 (706)
++.++-+..|+.....-........... .-....|.++...+ ++..+.+++.++.+..+|..+++...... ...
T Consensus 373 Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 8888778888755332111000000000 01234566666543 44547777777889999998776543322 123
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
..+.++. ..+++.. ..|+. +.+.+||..+++....... ....|.++...+++. +..++. +-+..|+
T Consensus 452 ~~v~~i~--~d~~g~l--wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 452 ENVYAIL--PDGEGNL--WLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR--LWIGGE-EGLSVFK 523 (795)
T ss_dssp SCEEEEE--ECSSSCE--EEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC--EEEEES-SCEEEEE
T ss_pred CeeEEEE--ECCCCCE--EEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC--EEEEeC-CceEEEe
Confidence 4577765 5555554 34444 4588899888765443221 236788999888887 333444 4588888
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee----cCCcEEEEEEcc
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----HKRGIWSVEFSP 546 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~s~ 546 (706)
...... . ..... .........|.++...++|.+.+. +.+ -+..||..+.+.. .+.. ....|.++...+
T Consensus 524 ~~~~~~-~---~~~~~-~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~ 595 (795)
T 4a2l_A 524 QEGLDI-Q---KASIL-PVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDS 595 (795)
T ss_dssp EETTEE-E---ECCCS-CSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEETTTTEEE-EECGGGTCSCSCEEEEEECT
T ss_pred CCCCeE-E---EecCC-CCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeECCCCCcEE-EeCCCCCCchhheEEEEECC
Confidence 765321 0 00000 000113456889999998876554 444 5888998766433 3322 234688999998
Q ss_pred CCCEEEEecCCCcEEEEEcCCCceEEEEeeccc----CE--EEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 547 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTS----SV--LRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 547 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~i--~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+|.+.+++ ..| |..||..+++ ...+....+ .+ .++...++|++ ..|+.+| +..++..
T Consensus 596 ~g~lWi~t-~~G-l~~~~~~~~~-~~~~~~~dGl~~~~f~~~~~~~~~~G~l-~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 596 FGRLWLST-NRG-ISCFNPETEK-FRNFTESDGLQSNQFNTASYCRTSVGQM-YFGGING-ITTFRPE 658 (795)
T ss_dssp TSCEEEEE-TTE-EEEEETTTTE-EEEECGGGTCSCSCEEEEEEEECTTSCE-EEEETTE-EEEECGG
T ss_pred CCCEEEEc-CCc-eEEEcCCCCc-EEEcCCcCCCccccCccCceeECCCCeE-EEecCCc-eEEEcHH
Confidence 88866655 444 8889987654 334432222 22 45566677754 4456667 5555543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-15 Score=138.16 Aligned_cols=258 Identities=9% Similarity=-0.002 Sum_probs=184.4
Q ss_pred CCcEEEEeCCCceeeEeee------CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 375 IEQVQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
++.|.++|..+++....+. ........+. + +++.+.++...++.|.+||..+++.+..+. .......++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~ 90 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--I--RDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH 90 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--E--ETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--E--ECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence 6899999999988765431 1112234443 3 345556777778999999999999988875 346788999
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecC-----cceEEEEEcCCCCEEEEee-CCCcEEEEe
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHG-----KDINSLAVAPNDSLVCTGS-QDRTACVWR 522 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~-~dg~i~i~d 522 (706)
++++++ +.++...++.|.+||..+.+ ......... .....+++ .+++++++.. .++.|.++|
T Consensus 91 ~~~~g~-lyv~~~~~~~v~~iD~~t~~----------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 91 FLSDEK-AYVTQIWDYRIFIINPKTYE----------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEETTE-EEEEEBSCSEEEEEETTTTE----------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEE
T ss_pred EeCCCe-EEEEECCCCeEEEEECCCCe----------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEE
Confidence 999874 55555578999999987642 222222111 14556777 3444444433 488999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEEecCC----------CcEEEEEcCCCceEEEEeec-ccCEEEEEEEeCCC
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD----------KTIKIWSISDGSCLKTFEGH-TSSVLRASFLTRGA 591 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~ 591 (706)
..+++....+... .....++++|+|++++++..+ +.|.++|..+++....+... ......++|+|+++
T Consensus 159 ~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 159 TETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp TTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred CCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 9999888877643 345689999999987777655 78999999999888777533 23688999999999
Q ss_pred EEEEEeCCCCEEEEECCCCeEEEE--eccCCCcEEEEEEcCC-CCEEEEE----eCCCcEEEEECCchh
Q 005254 592 QIVSCGADGLVKLWTVRTGECIAT--YDKHEDKIWALAVGKK-TEMFATG----GSDALVNLWHDSTAA 653 (706)
Q Consensus 592 ~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~----~~dg~i~vw~~~~~~ 653 (706)
+|.++.. .|.+||..+++.... +..+......++++|+ +.+.++. ..++.|.+|+.. ++
T Consensus 238 ~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 238 TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 9988765 899999998876421 1122456889999994 5555555 578999999987 54
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-15 Score=160.54 Aligned_cols=186 Identities=12% Similarity=-0.041 Sum_probs=125.5
Q ss_pred cCCCCEEEEeeCC------eEEEEEccCCeEEEeec------CCCccEEEEEEccCCCEEEEE-----eccCeEEEEECC
Q 005254 28 SSDGSFIACACGE------SINIVDLSNASIKSTIE------GGSDTITALALSPDDKLLFSS-----GHSREIRVWDLS 90 (706)
Q Consensus 28 s~dg~~l~~~~~~------~i~i~d~~~~~~~~~l~------~~~~~i~~l~~s~~~~~l~s~-----~~d~~i~iwd~~ 90 (706)
+|||+++++.... .|.+.+..+++....+. +|...+.+++|||||++||.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 4899999887642 35666655665444433 456689999999999999943 335689999999
Q ss_pred CCeEE-EEeeccCCCeEEEEECCCCCEEEEecCCCc-------------EEEEECCCCe----EEEEeeCCCCcEEEEEE
Q 005254 91 TLKCL-RSWKGHDGPAIGMACHPSGGLLATAGADRK-------------VLVWDVDGGF----CTHYFKGHKGVVSSILF 152 (706)
Q Consensus 91 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------------i~vw~~~~~~----~~~~~~~~~~~v~~~~~ 152 (706)
+++.+ .... .......++|+|||+.|+.++.+.. |++|++.++. ++.....+...+..+.|
T Consensus 156 tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 156 SGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp TCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred CCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence 99875 2111 1111267999999999999987765 9999998875 44444456678899999
Q ss_pred cCCCCceEEEEEecCC----eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC----CCEEEEEeCCC
Q 005254 153 HPDTDKSLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR----DKVVNLWDLRD 219 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~w~~~~ 219 (706)
+|||+. ++..+.++ .|.+|+..+++. ..+..+...+....+ ++|. ++..+. ++.|.+|++.+
T Consensus 235 SpDG~~--l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 235 SRDGKY--LFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp CTTSCC--EEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred CCCCCE--EEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 999987 55555444 677777655543 344445455555555 5666 444443 45666666543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-15 Score=134.63 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=168.0
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCC-cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.++++++.++.|.+||.++++.+..+..+. ..+.+++++|+|+ +++ +.++.|..||. .++ ....+
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~----------~~W~~ 71 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGR----------ELWNI 71 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSC----------EEEEE
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCC----------EEEEE
Confidence 348999999999999999999999988776 5789999999987 566 45778998887 332 33334
Q ss_pred eec-CcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEee------cCCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 491 AAH-GKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFRG------HKRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 491 ~~~-~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
... ...+.++.+.++|+++++.+. ++.+..+|. +++.+..+.. +......+++.++|+++++...++.|..
T Consensus 72 ~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~ 150 (276)
T 3no2_A 72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVRE 150 (276)
T ss_dssp ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEE
T ss_pred cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEE
Confidence 333 346788999999999999887 778888885 7777776652 2224556678999999999999999999
Q ss_pred EEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCC------CcEEEEEEcCCCCEEE
Q 005254 563 WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHE------DKIWALAVGKKTEMFA 636 (706)
Q Consensus 563 wd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~ 636 (706)
||.+ |+.+.++..+ ..+..+.+.++|+.+++++.++.|..+|..+|+.+..+..+. ..+..+...++|..++
T Consensus 151 ~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 151 IAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp ECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred ECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 9987 9999888754 445567888999999999988899999999999999886432 2378889999999888
Q ss_pred EEe
Q 005254 637 TGG 639 (706)
Q Consensus 637 ~~~ 639 (706)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 763
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-14 Score=132.32 Aligned_cols=119 Identities=18% Similarity=0.064 Sum_probs=92.8
Q ss_pred EEEECCCCCEEEEecC-----CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE--------ecCCeEEEE
Q 005254 107 GMACHPSGGLLATAGA-----DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVW 173 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--------~~dg~i~vw 173 (706)
.....|+++++++... ++.|.+.|..+++.+..+..-..+ . ++++||++..+++.. ..++.|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456799999888765 579999999999999988865555 4 999999988444331 246789999
Q ss_pred ECCCCeeEEEeeccc-------ceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceeeec
Q 005254 174 DLLAKKCVATLDKHF-------SRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 174 d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~ 227 (706)
|..+++.+..+.-.. .....++|+|||++++++.. ++.|.++|+.+++.+.+++
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999888775321 23556899999999998874 6899999999888776654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-10 Score=118.88 Aligned_cols=572 Identities=11% Similarity=0.063 Sum_probs=325.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC--------CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG--------SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL 95 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~--------~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 95 (706)
+|+-.++| +|-+|..+.+..||-.+-+.... ... ...|.+|...++|..|..++.++.+..||..+.+..
T Consensus 23 ~I~qD~~G-~lWigT~~GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~ 100 (781)
T 3v9f_A 23 SITQDKQG-FLWFATEEGLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFS 100 (781)
T ss_dssp EEEECTTS-CEEEEESSCEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEE
T ss_pred EEEECCCC-CEEEccCCcCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEE
Confidence 57777777 46677777888898554222211 111 246999999999884555666756999999887654
Q ss_pred EEe-e---c---cCCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCeEEEEee-----CCCCcEEEEEEcCCCCceEE
Q 005254 96 RSW-K---G---HDGPAIGMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSLL 161 (706)
Q Consensus 96 ~~~-~---~---~~~~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l 161 (706)
... . . ....|.++.... ++. |..++.++.|..+|..+++...... .....|.++...+++. +
T Consensus 101 ~~~~~~~~~~~l~~~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---l 176 (781)
T 3v9f_A 101 VYQYNPEDPQSLITNDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGK---L 176 (781)
T ss_dssp EECCCTTCSSSCSCSCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTE---E
T ss_pred eeccccCCCCCcccCcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCC---E
Confidence 321 1 0 123688998887 665 4445534558999988776543311 1234588888776654 5
Q ss_pred EEEecCCeEEEEECCCCeeEEEeec-------ccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC------
Q 005254 162 FSGSDDATVRVWDLLAKKCVATLDK-------HFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT------ 228 (706)
Q Consensus 162 ~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~------ 228 (706)
..++.++-|..||..+++....... ....|.++...++|.+ ..++.+ -+..||..+.+.......
T Consensus 177 wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-wigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~ 254 (781)
T 3v9f_A 177 YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNI-WIGTSK-GLALFNANTETFTNFHNNPGNIHG 254 (781)
T ss_dssp EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCE-EEEETT-EEEEEETTTTEEEC----------
T ss_pred EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCE-EEEeCC-cHheECCCCCcEEEEEcCCCcccc
Confidence 6677775699999877654332111 1246888888888764 445555 588999876543321111
Q ss_pred --cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCcc----ccccccCC
Q 005254 229 --YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV----TISFEMDD 302 (706)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~ 302 (706)
...+..+....++ .+..+...+-|..++..+........... .......-
T Consensus 255 l~~~~i~~i~~d~~g------------------------~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 310 (781)
T 3v9f_A 255 ALSSYIFSIKQLKDN------------------------KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSL 310 (781)
T ss_dssp -CCCCEEEEEECTTS------------------------EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSB
T ss_pred ccCceEEEEEECCCC------------------------CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCC
Confidence 1123333332332 45566665567778877664322111000 00000111
Q ss_pred CccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe--eEecccCceeeEeeEeCCCCcEEEEEecCCcEEE
Q 005254 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS--KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380 (706)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~ 380 (706)
....+.++....++ .+-+++.++-+..++.............. ....-....|.++...+ ...+.+++.++.+..
T Consensus 311 ~~~~v~~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~lWigt~~~Gl~~ 387 (781)
T 3v9f_A 311 SNASARYIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGKLWIGTDGGGINV 387 (781)
T ss_dssp SSSCEEEEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSCEEEEEBSSCEEE
T ss_pred CCCeEEEEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCCEEEEeCCCcEEE
Confidence 23345555555544 57778877778777655432111110000 00011234466665543 345667776778999
Q ss_pred EeCCCceeeEee---eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe--CCCcCeEEEEEecCCCe
Q 005254 381 YDLSSMSCSYVL---AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 381 ~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 455 (706)
++..+....... ......|.++. ..+++. +..|+.++-+..++..+++...... .....|.++...+++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~--~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~- 462 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSL--KDSEGN--LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK- 462 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEE--ECTTSC--EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-
T ss_pred EECCCCeEEEccCCCCCCCcceEEEE--ECCCCC--EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-
Confidence 998765443221 12334566664 444554 4556766779999988776543321 2356788888888765
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee-
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG- 534 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 534 (706)
+..++. +-+..++............. . .......|.++...++|.+.+ |+.++-+..||..+++.. .+..
T Consensus 463 -lwigt~-~Gl~~~~~~~~~~~~~~~~~--~---~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~ 533 (781)
T 3v9f_A 463 -IWIGTH-AGVFVIDLASKKVIHHYDTS--N---SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVR-KFNQY 533 (781)
T ss_dssp -EEEEET-TEEEEEESSSSSCCEEECTT--T---SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEE-EECTT
T ss_pred -EEEEEC-CceEEEeCCCCeEEecccCc--c---cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEE-EccCC
Confidence 444555 45888886654211000000 0 001135688999999887655 444344788887665433 3321
Q ss_pred ---cCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec----ccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 535 ---HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH----TSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 535 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
....|.++...++|.+.+.. .+|.+..||..+++. ..+... ...|.++...++|++.++ +.+| |..++.
T Consensus 534 ~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~ 609 (781)
T 3v9f_A 534 EGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYIT 609 (781)
T ss_dssp TTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEET
T ss_pred CCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEEC
Confidence 23568999999888865554 467448888876653 333321 235778888888876655 4555 888898
Q ss_pred CCCeEEEEecc---CC-C--cEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 608 RTGECIATYDK---HE-D--KIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 608 ~~~~~~~~~~~---~~-~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.+++.. .+.. -. . ...++...++|++++ |+.+| +..++...
T Consensus 610 ~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 610 SKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp TTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSCC
T ss_pred CCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChhh
Confidence 776543 3321 11 1 234677788887555 66677 55666543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-15 Score=136.81 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=151.1
Q ss_pred ceEEcCCCC-EEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeecc
Q 005254 24 PLVVSSDGS-FIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 24 ~~~~s~dg~-~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
.++|+|+|+ +++++.. +.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+||.++++........
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 799999999 5555544 48999999887 5566667788999999999998887777789999999888765443321
Q ss_pred ----CCCeEEEEECCCCCEEEE----ec-------------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 102 ----DGPAIGMACHPSGGLLAT----AG-------------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 102 ----~~~v~~~~~s~~~~~l~~----~~-------------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
...+..++++|+|+++++ ++ ..+.|..++.. ++ +..+..+......++|+|+++.
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~-- 185 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNL-- 185 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCE--
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCE--
Confidence 235678999999998887 33 12456666655 44 3444556777899999999876
Q ss_pred EEEEecCCeEEEEECC-CCee---EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE
Q 005254 161 LFSGSDDATVRVWDLL-AKKC---VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC 236 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 236 (706)
+++.+.++.|.+|++. +++. ...+..+.+.+.+++++++|++.++. ++.|.+|+.+ ++....+.....+..++
T Consensus 186 lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~ 262 (296)
T 3e5z_A 186 LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLC 262 (296)
T ss_dssp EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEE
T ss_pred EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEE
Confidence 5777788999999986 4544 23333345567789999999855555 7889999986 66666655444466666
Q ss_pred ee-CCC
Q 005254 237 AI-PPG 241 (706)
Q Consensus 237 ~~-~~~ 241 (706)
+. +++
T Consensus 263 f~~~d~ 268 (296)
T 3e5z_A 263 FGGPEG 268 (296)
T ss_dssp EESTTS
T ss_pred EECCCC
Confidence 63 444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-14 Score=133.52 Aligned_cols=147 Identities=18% Similarity=0.078 Sum_probs=113.5
Q ss_pred EEEccCCCEEEEEec-----cCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec----------CCCcEEEEE
Q 005254 66 LALSPDDKLLFSSGH-----SREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG----------ADRKVLVWD 130 (706)
Q Consensus 66 l~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~vw~ 130 (706)
....|+++.+.+... ++.|.+.|..+++.+.++.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789999888765 579999999999999999866566 4 99999999888775 357899999
Q ss_pred CCCCeEEEEeeCCC-------CcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCC
Q 005254 131 VDGGFCTHYFKGHK-------GVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGS 201 (706)
Q Consensus 131 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 201 (706)
..+++.+..+.-.. .....++|+|||+. ++.+. .++.|.++|+.+++.+.++.... . ...+....+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~--~~~~P~g~~ 190 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C--YHIFPTAPD 190 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEECCS-E--EEEEEEETT
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEEEEEECCC-c--ceeecCCCc
Confidence 99999888775321 24567999999987 44444 37899999999999998885322 1 223333456
Q ss_pred EEEEEeCCCEEEEEeCCC
Q 005254 202 TLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 202 ~l~~~~~dg~i~~w~~~~ 219 (706)
.+++.+.||.+.+.++.+
T Consensus 191 ~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEEETTSCEEEEECCS
T ss_pred eeEEECCCCCEEEEECCC
Confidence 777888899888888765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-13 Score=127.90 Aligned_cols=115 Identities=15% Similarity=-0.011 Sum_probs=86.2
Q ss_pred EECCCCCEEEEecC--CC---cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe----------cCCeEEEE
Q 005254 109 ACHPSGGLLATAGA--DR---KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS----------DDATVRVW 173 (706)
Q Consensus 109 ~~s~~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~vw 173 (706)
...|+++++.+... .. .|.++|..+++.+..+.....+ .++++||++. ++.+. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~--lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSE--FALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCE--EEEEeccccccccCCCCCeEEEE
Confidence 45578887777653 22 8899999999998887754444 9999999987 44443 46789999
Q ss_pred ECCCCeeEEEeecc-------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceee-ecC
Q 005254 174 DLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLT-VPT 228 (706)
Q Consensus 174 d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~-~~~ 228 (706)
|..+.+.+..+... ......++|+|||++|+++.. ++.|.++| .+++.+.. ++.
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence 99998887766432 123457899999999999874 57899999 88876655 443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-13 Score=128.16 Aligned_cols=186 Identities=12% Similarity=0.031 Sum_probs=135.8
Q ss_pred EEcCCCCEEEEeeC--C----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEEC
Q 005254 26 VVSSDGSFIACACG--E----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDL 89 (706)
Q Consensus 26 ~~s~dg~~l~~~~~--~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~ 89 (706)
...||++++++... . .|.++|..+++.+..+.....+ .+++||||++|+++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44588888777653 2 7899999999998888765555 999999999999885 3678999999
Q ss_pred CCCeEEEEeecc-------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCce
Q 005254 90 STLKCLRSWKGH-------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 90 ~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 159 (706)
.+++.+..+... ......++|+|||++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~- 178 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPS- 178 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCc-
Confidence 999888877532 123458999999999998864 47899999 99998877 542 22 2556677654
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEee-----cccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLD-----KHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.+.+.|+...
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 3566778999999999 877663321 11112 233456777666555557888999988654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-14 Score=152.63 Aligned_cols=244 Identities=7% Similarity=0.000 Sum_probs=173.3
Q ss_pred ceEEEeeeeeecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCe-------
Q 005254 397 EIVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT------- 465 (706)
Q Consensus 397 ~~i~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~------- 465 (706)
..+..+. ++|+++.++++.+.+| .|++||+.+++.+.....+ ..+..++|+|||+ .|+.++.++.
T Consensus 125 ~~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 125 VALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp EEEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSS
T ss_pred EEEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC-EEEEEEECCcccccccc
Confidence 3456666 8899998555544444 8999999999877643222 2367899999998 5555555544
Q ss_pred ---------EEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeC-----CCcEEEEeCCC----
Q 005254 466 ---------IKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQ-----DRTACVWRLPD---- 525 (706)
Q Consensus 466 ---------i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~---- 525 (706)
|++|++.+... ........ +...+..+.++|||++|+..+. +..|++||+.+
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~--------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccCCCCEEEEEECCCCcc--------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999865421 01112222 3445788999999999988765 56899999976
Q ss_pred --cc-EEEEEeecCCcEEEEEEccCCCEEEEecCC----CcEEEEEcCCCc--eEEEEeeccc--CEEEEEEEeCCCEEE
Q 005254 526 --LV-SVVTFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDGS--CLKTFEGHTS--SVLRASFLTRGAQIV 594 (706)
Q Consensus 526 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~ 594 (706)
+. ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+..+.|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 35556666666655 588999888776553 369999998774 2344544544 677889987777888
Q ss_pred EEeCCC--CEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEECCchh
Q 005254 595 SCGADG--LVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-G---SDALVNLWHDSTAA 653 (706)
Q Consensus 595 ~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---~dg~i~vw~~~~~~ 653 (706)
+...|+ .|.+||+.+|+.+..+..+.+.+..+.++|++..++.. + ..+.+..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888888 46677887888888888888889999999999766532 2 35789999998765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-13 Score=125.38 Aligned_cols=279 Identities=7% Similarity=-0.048 Sum_probs=190.2
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEe-eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.++++.+ ++.+.++...++.|..||.. +..... .......+.++. +.+++.. .++...++.|..|+.. +
T Consensus 14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~--~~~~g~l-~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLT--ISSDGEV-WFTENAANKIGRITKK-G 87 (299)
T ss_dssp SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEE--ECTTSCE-EEEETTTTEEEEECTT-S
T ss_pred CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEE--ECCCCCE-EEeCCCCCeEEEECCC-C
Confidence 35667777765 55666655557899999988 443322 223445667776 6677664 5666667889999986 3
Q ss_pred eEEE-EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 432 CCVG-VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 432 ~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
+... ........+..+++.+++. ++++...++.|..|+. .+.. ...........+..+++.++|++++
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~---------~~~~~~~~~~~~~~i~~~~~g~l~v 156 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKI---------REYELPNKGSYPSFITLGSDNALWF 156 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCE---------EEEECSSTTCCEEEEEECTTSCEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCE---------EEecCCCCCCCCceEEEcCCCCEEE
Confidence 3222 2223456789999999876 6666667888999987 3210 1111122345688999999998888
Q ss_pred EeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-EeecccCEEEEEEEe
Q 005254 511 TGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFLT 588 (706)
Q Consensus 511 ~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~ 588 (706)
+...++.|..||. +++.... ...+...+..++++++++++++...++.|.+||. +++.... ...+...+..+++++
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA 234 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC
Confidence 7777789999998 6655432 2334556889999999998777777889999998 6664332 222446788999999
Q ss_pred CCCEEEEEeCCCCEEEEECCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 589 RGAQIVSCGADGLVKLWTVRTGECIAT-YDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 589 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+|+.+++...++.|..||. +++.... +..+...+.++++ +++++.++.. .+.+..++..+..
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 9987776657789999998 5653322 3345567899999 8888777655 5667777776543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-14 Score=136.56 Aligned_cols=153 Identities=12% Similarity=0.042 Sum_probs=116.7
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYF 140 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~ 140 (706)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456788999998888877788899999 45667777777788899999999998888888899999999988866655
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecC----CeEEEEECCCCeeEEEee--cccceEEEEEEecCCCEEEEEeC------
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDD----ATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR------ 208 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------ 208 (706)
..+...+.+++++|+++. +++...+ +.|.+||..+++....+. .+...+..++++|+|+++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l--~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRL--FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp ECSSSSEEEEEECTTSCE--EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eCCCCCcceEEECCCCcE--EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 456788999999998763 5555555 589999998777653332 23457899999999987666543
Q ss_pred CCEEEEEeCC
Q 005254 209 DKVVNLWDLR 218 (706)
Q Consensus 209 dg~i~~w~~~ 218 (706)
.+.|..++..
T Consensus 161 ~~~l~~~~~~ 170 (333)
T 2dg1_A 161 LGGVYYVSPD 170 (333)
T ss_dssp CEEEEEECTT
T ss_pred CceEEEEeCC
Confidence 2445555543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=8e-15 Score=135.31 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=170.1
Q ss_pred eEEEeeeeeecCCCEEEE-EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC
Q 005254 398 IVLCLDTCALSSGKILIV-TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 476 (706)
...++. +.+++.. ++ +...++.|..|+..+.............+.++++++++. ++++.. ++.|..|+......
T Consensus 25 ~p~~i~--~~~~g~l-~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVA--VDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEE--ECTTCCE-EEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCC
T ss_pred CccceE--ECCCCCE-EEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceE
Confidence 344554 6677764 55 557788999999876543332233445788899999987 555555 88999998765321
Q ss_pred CCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec
Q 005254 477 DAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
.... .....+..++++++|+++++...++.|.+|+..+.............+..++++++++++++..
T Consensus 100 -----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 168 (270)
T 1rwi_B 100 -----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT 168 (270)
T ss_dssp -----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG
T ss_pred -----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC
Confidence 1111 2225678999999999887777788999998765544333233334678899999999877777
Q ss_pred CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 005254 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 635 (706)
.++.|.+||............+...+..++++++|..+++...++.|.+||............+...+.+++++++|+++
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 78899999987665544333333678899999999777777778899999987655433222344678999999999988
Q ss_pred EEEeCCCcEEEEECCchhH
Q 005254 636 ATGGSDALVNLWHDSTAAE 654 (706)
Q Consensus 636 ~~~~~dg~i~vw~~~~~~~ 654 (706)
++...++.|.++++...+.
T Consensus 249 v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCEEEEEcCCCccc
Confidence 8888999999999987654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-14 Score=132.71 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=139.9
Q ss_pred CeEEEEEccCCeEEEeec------CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCC
Q 005254 40 ESINIVDLSNASIKSTIE------GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPS 113 (706)
Q Consensus 40 ~~i~i~d~~~~~~~~~l~------~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 113 (706)
+.|.++|..+++....+. ........+++. ++++.++...++.|.+||.++++.+.++. .......++++++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSD 94 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEET
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCC
Confidence 489999999999876542 122346778874 34455555668899999999999999886 4577899999999
Q ss_pred CCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEe-cCCeEEEEECCCCeeEEEeecc
Q 005254 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGS-DDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 114 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
++..++...++.|.+||..+++....+.... .....+++ +++. ++++.. .++.|.++|+.+++.+..+...
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY-VYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE-EEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 8544444478999999999999887766433 14566777 3344 334433 4889999999999988877543
Q ss_pred cceEEEEEEecCCCEEEEEeCC----------CEEEEEeCCCCcceeeecCc--ceeeeEEeeCCC
Q 005254 188 FSRVTSMAITSDGSTLISAGRD----------KVVNLWDLRDYSCKLTVPTY--EMVEAVCAIPPG 241 (706)
Q Consensus 188 ~~~v~~~~~~~~~~~l~~~~~d----------g~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~ 241 (706)
.....++++++|++++++..+ +.|.++|..+++....+... .....+++.+++
T Consensus 172 -~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 172 -IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp -SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred -CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 345688999999876666544 78999999988766555432 234445555444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-13 Score=129.28 Aligned_cols=172 Identities=14% Similarity=0.088 Sum_probs=140.5
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCe---------EEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNAS---------IKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST 91 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~---------~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~ 91 (706)
...+++++.+.++++++.+.+++|++++.+ ... ....+.. |++|+| |+++|+++ .++.|++||+.+
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence 347999999999999999999999976544 111 2223566 999999 99999999 889999999988
Q ss_pred CeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 92 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
.........|..++.++.+.+.. +|+++.||.|.+||+.++.... +...|++++|+|+| ++.|..||.++
T Consensus 116 l~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~ 185 (388)
T 1xip_A 116 LSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQ 185 (388)
T ss_dssp TTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE----EEEEETTSCEE
T ss_pred hhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc----eEEEEcCCcEE
Confidence 77666777788889998887653 8888999999999999887643 45689999999976 67899999999
Q ss_pred EEECCCCee--EEEe------e---cccceEEEEEEecCCCEEEEEe
Q 005254 172 VWDLLAKKC--VATL------D---KHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 172 vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
+|+...+.. ...+ . +|...|.++.|.+++.++++-+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999887775 5555 2 3678999999999998888643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-14 Score=127.74 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=156.0
Q ss_pred CCCCEEEEeeCC-eEEEEEccCCeEEEeecCCC-ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC-CCe
Q 005254 29 SDGSFIACACGE-SINIVDLSNASIKSTIEGGS-DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-GPA 105 (706)
Q Consensus 29 ~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v 105 (706)
..+++|++++++ .|.+||.++|+.+..+..+. ..+.+++++|+|++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 345677777766 89999999999999888776 4789999999999988 34778999999 899999998753 578
Q ss_pred EEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeC------CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 106 IGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKG------HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.++.+.+||+++++.+. ++.|..+|. +|+.+..+.. +......+++.++++. +++...++.|..||.+ |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~--lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY--LVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE--EEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE--EEEecCCCEEEEECCC-C
Confidence 89999999999999876 777888886 6777766542 2223455677887775 8888899999999987 9
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
+.+..+..+ ....++.+.++|+.++++..++.|..+|..+++.+..+..
T Consensus 156 ~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 156 QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 998888654 4456678889999999998888999999999998887753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-12 Score=121.12 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=137.6
Q ss_pred cceEEcCCCCEEEEee-CCeEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEE-EEee
Q 005254 23 GPLVVSSDGSFIACAC-GESINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCL-RSWK 99 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~-~~~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~ 99 (706)
.+++++++|+++++.. ++.|.+||.. ++... .+..+...+.+++++++|.++++...++.|..||.. ++.. ..+.
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~ 95 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLP 95 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCC
Confidence 4699999999887766 3589999988 65443 223355789999999999988877768899999986 4322 2222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-eeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY-FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.....+..+++++++.++++...++.|.+||. +++.... ...+...+..+++.+++. ++++...++.|..||. ++
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TC
T ss_pred CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC--EEEEeCCCCEEEEEcC-CC
Confidence 34567899999999988888777889999998 5554332 233456789999999875 3555556788999998 66
Q ss_pred eeEEE-eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 179 KCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 179 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.... +..+...+.++++.++|++.++...++.|..|+.
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 172 DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 65432 3334456888999999886666555777888876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-14 Score=130.61 Aligned_cols=237 Identities=9% Similarity=-0.005 Sum_probs=162.7
Q ss_pred ccceEEcCCCCEEE-Eee-CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee
Q 005254 22 GGPLVVSSDGSFIA-CAC-GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 22 ~~~~~~s~dg~~l~-~~~-~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
..+++++++|++++ +.. ++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||..+........
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCC
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeec
Confidence 34699999999766 423 45899999766554333233445678999999999666655 8899999987655432222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 179 (706)
.....+..++++++|+++++...++.|.+|+..+.............+..+++.++++ ++++...++.|.+||.....
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC--EEEEEGGGTEEEEECTTTCC
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC--EEEEECCCCEEEEEecCCCc
Confidence 2336789999999999877777788999998765544332223344678899999875 36666667899999987766
Q ss_pred eEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 180 CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 180 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
.......+...+.++++.++|.++++...++.|.+|+............ ...+..+++.+++.
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------------- 246 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT---------------- 246 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC----------------
T ss_pred eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC----------------
Confidence 5443333446788999999997666666688999999876543322211 23456666666654
Q ss_pred cccccceEEEEecCCCeEEEEECCCC
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
.+++...++.|++++....
T Consensus 247 -------l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 247 -------VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp -------EEEEEGGGTEEEEECCCGG
T ss_pred -------EEEEECCCCEEEEEcCCCc
Confidence 5677788899999987654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-09 Score=116.73 Aligned_cols=529 Identities=11% Similarity=0.067 Sum_probs=304.3
Q ss_pred CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec--------cCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG--------HDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 60 ~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
...|.+|.-.++|. |-.|+.+| +..||-.+.+.... .. ....|.++...+++..|-+++.++-+..||.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~ 94 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNY 94 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEET
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECC
Confidence 46899999999985 56677776 77788655333222 11 1245999999998873555666646999999
Q ss_pred CCCeEEEEeeC-------CCCcEEEEEEcC--CCCceEEEEEecCCeEEEEECCCCeeEEEee-----cccceEEEEEEe
Q 005254 132 DGGFCTHYFKG-------HKGVVSSILFHP--DTDKSLLFSGSDDATVRVWDLLAKKCVATLD-----KHFSRVTSMAIT 197 (706)
Q Consensus 132 ~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~ 197 (706)
.+++....... ....|.++.... ++. +..++.++.|..+|..+++...... .....|.++...
T Consensus 95 ~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d 171 (781)
T 3v9f_A 95 ETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEA 171 (781)
T ss_dssp TTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEE
T ss_pred CCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEEC
Confidence 88775443111 123688888766 443 5566645558899987766443211 112457888887
Q ss_pred cCCCEEEEEeCCCEEEEEeCCCCcceeeecC--------cceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPT--------YEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 198 ~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
++|. |..++.++-|..|+..+.+....... ...+..+....++ .+..
T Consensus 172 ~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g------------------------~lwi 226 (781)
T 3v9f_A 172 EDGK-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNG------------------------NIWI 226 (781)
T ss_dssp ETTE-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTC------------------------CEEE
T ss_pred CCCC-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCC------------------------CEEE
Confidence 7775 55566665688999877653321100 1123333332332 3444
Q ss_pred ecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee--
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK-- 347 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 347 (706)
+... -+..|+..++........... ........+.++...+ ...+.+++..+-+..++...............
T Consensus 227 gt~~-Gl~~~d~~~~~~~~~~~~~~~---~~~l~~~~i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 227 GTSK-GLALFNANTETFTNFHNNPGN---IHGALSSYIFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp EETT-EEEEEETTTTEEEC--------------CCCCEEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred EeCC-cHheECCCCCcEEEEEcCCCc---cccccCceEEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 4444 588888876644322111000 0011223455555444 44566677756677776544321111000000
Q ss_pred -E----ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee---------CCcceEEEeeeeeecCCCEE
Q 005254 348 -R----LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA---------GHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 348 -~----~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~ 413 (706)
. ..-....|.++... ....+-+++.++.|..++........... .....|.++. ...++.
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D--~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~--~d~~g~-- 375 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQD--SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVC--DDGQGK-- 375 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEEC--SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEE--ECTTSC--
T ss_pred cCCCCCCCCCCCeEEEEEEe--CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEE--EcCCCC--
Confidence 0 01123445555554 34457777877889999887654332211 1234566664 444444
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEE---eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
+-.|+.++-+..++..++...... ......|.++...+++. |..|+.++-+..++..... ....
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~-----------~~~~ 442 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK-----------FQII 442 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE-----------EEEC
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc-----------EEEe
Confidence 556676677889998765433211 22346788888887776 5556666668888765431 1111
Q ss_pred ---eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec-----CCcEEEEEEccCCCEEEEecCCCcEEE
Q 005254 491 ---AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH-----KRGIWSVEFSPVDQVVITASGDKTIKI 562 (706)
Q Consensus 491 ---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~i 562 (706)
......|.++...++|.+.+ |+. +-+..||..+++........ ...|.++...++|.+.+.....| +..
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~ 519 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGI 519 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEE
T ss_pred ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEE
Confidence 11345688898888886544 555 45889998776543332222 36789999999888665543355 888
Q ss_pred EEcCCCceEEEEee----cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc----CCCcEEEEEEcCCCCE
Q 005254 563 WSISDGSCLKTFEG----HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK----HEDKIWALAVGKKTEM 634 (706)
Q Consensus 563 wd~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~ 634 (706)
||..+++. ..+.. ....|.++...++|+..++ +.+|.+..||..+++.. .+.. ....|.++...++|++
T Consensus 520 ~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 520 YTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp ECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCE
T ss_pred EeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCE
Confidence 98766543 33321 2346888888888876554 44675588998776532 3321 2346788988888876
Q ss_pred EEEEeCCCcEEEEECCc
Q 005254 635 FATGGSDALVNLWHDST 651 (706)
Q Consensus 635 l~~~~~dg~i~vw~~~~ 651 (706)
.++ +.+| |..++..+
T Consensus 597 W~~-t~~G-l~~~~~~~ 611 (781)
T 3v9f_A 597 WAS-TNTG-ISCYITSK 611 (781)
T ss_dssp EEE-CSSC-EEEEETTT
T ss_pred EEE-cCCc-eEEEECCC
Confidence 554 4455 66677654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-09 Score=106.97 Aligned_cols=519 Identities=12% Similarity=0.054 Sum_probs=292.2
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCCeEEE
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGPAIGM 108 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 108 (706)
..+|+++....|+..++.+......+. ..-....+|+|++.+..|..+. .++.|..+++........+.........+
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 347888888899999998765433332 2235678999999777776554 57889999987654444444333457789
Q ss_pred EECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEee
Q 005254 109 ACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATLD 185 (706)
Q Consensus 109 ~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 185 (706)
++.+.+..|..+ ...+.|.+.+++.......+...-.....+++.|.... |+... ..+.|...++.........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~--lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGF--MYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTE--EEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCe--EEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 999876666554 45678999998765433333344566799999986554 33333 3567888887544433323
Q ss_pred cccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 186 KHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
........++++++++.|+.+. ..+.|...+++................++... .
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~------------------------~ 218 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ------------------------D 218 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET------------------------T
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC------------------------C
Confidence 3446788999999877777765 46789999987543311111111222333322 1
Q ss_pred eEEEEecCCCeEEEEECCCCeE---EeeccC-c--ccccccc--------CCCccceeEEEEccCCCeeEEEeeCCceEE
Q 005254 265 IHFITVGERGIVRMWNADSACL---YEQKSS-D--VTISFEM--------DDSKRGFTAATVLPSNQGLLCVTADQQLLL 330 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~---~~~~~~-~--~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 330 (706)
..+++-...+.|...|..++.. +..... . ....... .....+...++....+....|.+..|....
T Consensus 219 ~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~ 298 (628)
T 4a0p_A 219 YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 298 (628)
T ss_dssp EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEEC
T ss_pred EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEec
Confidence 2445555567777777655421 111000 0 0000000 000111122222211112222222221110
Q ss_pred EEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeee-CCcceEEEeeeeeec
Q 005254 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLA-GHSEIVLCLDTCALS 408 (706)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~ 408 (706)
. ....+ .+ ...+++.+.. ..|+-..+..... ...+. ..-..+..++ +.+
T Consensus 299 ~----------------------d~~~C---~~-~~~~Ll~s~~-~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld--~d~ 349 (628)
T 4a0p_A 299 A----------------------DNRTC---SA-PTTFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAID--YDP 349 (628)
T ss_dssp T----------------------TSSCE---EC-CSSEEEEEET-TEEEEECCCTTCCCCEECCCTTCSCEEEEE--EET
T ss_pred c----------------------cCCcC---cc-ccceeeeecc-ceEEEEecccccCceEEEEehhcCCceEEE--Eec
Confidence 0 00001 11 2334444443 5566665543321 11122 1224466677 888
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccc
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 482 (706)
.++.++.+-...+.|..++.........+.. ....+..+++...++++..+-+..+.|.+.+++...
T Consensus 350 ~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~------- 422 (628)
T 4a0p_A 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS------- 422 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE-------
T ss_pred CCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe-------
Confidence 8888666666678888888765433333322 234688999999888777888888999999886431
Q ss_pred ccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCC--cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCC
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDR--TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDK 558 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg 558 (706)
........-.....+++.| .|.++.+-.... .|...++............-.....|+++++++.|+.+. ..+
T Consensus 423 ---~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~ 499 (628)
T 4a0p_A 423 ---VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR 499 (628)
T ss_dssp ---EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ---EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCC
Confidence 1122233445689999999 555555543332 566666653333333333345678999999877776664 457
Q ss_pred cEEEEEcCCCceEEEEe-ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 559 TIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.|...++. |...+.+. ........++... +....+=...+.|...|..+|+....+.
T Consensus 500 ~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 500 RIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp EEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred EEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 89999985 44444443 2334456676644 3333443345678888877776444443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=145.01 Aligned_cols=186 Identities=16% Similarity=0.056 Sum_probs=121.1
Q ss_pred cCCCCEEEEeeCC------eEEEEEcc---CCeEEEee------cCCCccEEEEEEccCCCEEEEEecc-----CeEEEE
Q 005254 28 SSDGSFIACACGE------SINIVDLS---NASIKSTI------EGGSDTITALALSPDDKLLFSSGHS-----REIRVW 87 (706)
Q Consensus 28 s~dg~~l~~~~~~------~i~i~d~~---~~~~~~~l------~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iw 87 (706)
+|||+++++.... .|.+.+.. +++....+ .+|...+..++|||||++||.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 4999999987642 34555554 44433322 2344578999999999999987553 469999
Q ss_pred ECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCc--------------EEEEECCCCe----EEEEeeCCCCcEEE
Q 005254 88 DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRK--------------VLVWDVDGGF----CTHYFKGHKGVVSS 149 (706)
Q Consensus 88 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~--------------i~vw~~~~~~----~~~~~~~~~~~v~~ 149 (706)
|+.+++.+.... +...+..++|+|| +.|+.++.++. |++|++.++. .+.....+...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765421 2222457899999 99998876543 8999998765 23322334446899
Q ss_pred EEEcCCCCceEEEEEec-----CCeEEEEECCCC--eeEEEeecccceEEEEEEecCCCEEEEEeCC----CEEEEEeCC
Q 005254 150 ILFHPDTDKSLLFSGSD-----DATVRVWDLLAK--KCVATLDKHFSRVTSMAITSDGSTLISAGRD----KVVNLWDLR 218 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~w~~~ 218 (706)
+.|+|||+. ++..+. ...|++||+.++ +....+..+...+... ++|+|+.|+..+.+ +.|.+|++.
T Consensus 273 ~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 273 ASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp EEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred EEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 999999887 554443 348999999876 3134454444444444 34788877777643 335555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=151.24 Aligned_cols=262 Identities=8% Similarity=-0.064 Sum_probs=172.3
Q ss_pred EEEEeCCCceeeEeee------CCcceEEEeeeeeecCCCEEEEEee----CCCcEEEEeCCCceEEEEEeCCCcCe--E
Q 005254 378 VQVYDLSSMSCSYVLA------GHSEIVLCLDTCALSSGKILIVTGS----KDNSVRLWDSESRCCVGVGTGHMGAV--G 445 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~v--~ 445 (706)
+...+...+.....+. +|...+..+. ++|+++.++++.+ .+..|++||+.+++.+. ..+...+ .
T Consensus 96 l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~--~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~ 171 (695)
T 2bkl_A 96 LYWRQGESGQEKVLLDPNGWSKDGTVSLGTWA--VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYA 171 (695)
T ss_dssp EEEEESTTSCCEEEECGGGSSSSSCEEEEEEE--ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTC
T ss_pred EEEEcCCCCCcEEEEchHHhccCCCEEEEEEE--ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCccccc
Confidence 4455544444333332 3444566776 8899998554443 34579999999987641 1122222 6
Q ss_pred EEEEecCCCeEEEEecCCCe-------------EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 446 AVAFSKKLQNFLVSGSSDHT-------------IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~-------------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.++|+|+|+ .|+.++.+.. |++|++.+..... ........+...+..+.++|||++|+..
T Consensus 172 ~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 172 TPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp CCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTSCCEEEE
T ss_pred ceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCCCEEEEE
Confidence 899999998 5666666554 9999987642100 0111112244568899999999999988
Q ss_pred eCCC----cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec---CCCcEEEEEcCCCce--EEEEeec--ccCE
Q 005254 513 SQDR----TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSC--LKTFEGH--TSSV 581 (706)
Q Consensus 513 ~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~i 581 (706)
+.++ .|++++..+++. ..+..+...+....+ +++.+++... .++.|.+||+.+++. ...+..+ ...+
T Consensus 245 ~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l 322 (695)
T 2bkl_A 245 ILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASL 322 (695)
T ss_dssp EEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEE
T ss_pred EeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeE
Confidence 7666 678887665543 444555666666666 5666444443 257899999987753 2333333 4457
Q ss_pred EEEEEEeCCCEEEEEeCCCCEEEEECC-CCeEEEEeccC-CCcEEEEEEcCCCCEEEE----EeCCCcEEEEECCchh
Q 005254 582 LRASFLTRGAQIVSCGADGLVKLWTVR-TGECIATYDKH-EDKIWALAVGKKTEMFAT----GGSDALVNLWHDSTAA 653 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~----~~~dg~i~vw~~~~~~ 653 (706)
..++|+ ++.++++...|+..++|.+. +++....+..+ .+.+..+.++|+++.++. ....+.|++||+.+++
T Consensus 323 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 323 LSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 788888 67788888999988887654 46666667655 677888999999987763 2335789999998765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-13 Score=128.23 Aligned_cols=114 Identities=16% Similarity=0.031 Sum_probs=87.1
Q ss_pred CCCCEEEEecCC-----CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE--------ecCCeEEEEECCCC
Q 005254 112 PSGGLLATAGAD-----RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------SDDATVRVWDLLAK 178 (706)
Q Consensus 112 ~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--------~~dg~i~vwd~~~~ 178 (706)
++++++++.... +.|.++|..+++.+..+..-..+ .++++||++..++... ..++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577777666542 68999999999999998865555 8999999988444332 14678999999999
Q ss_pred eeEEEeecc-------cceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCCcceeeec
Q 005254 179 KCVATLDKH-------FSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 179 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~ 227 (706)
+.+..+.-. ......+.|+|||++|+++.. ++.|.+.|+.+.+.+..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 988877532 123457899999999999874 5789999998887666554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-13 Score=127.99 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=138.0
Q ss_pred CCCCEEEEeeC------CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCC
Q 005254 29 SDGSFIACACG------ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTL 92 (706)
Q Consensus 29 ~dg~~l~~~~~------~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~ 92 (706)
+|++.+++... +.|.++|..+++.+..+.....+ .+++||||++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 57777777765 58999999999999988866666 899999999988775 3678999999999
Q ss_pred eEEEEeecc-------CCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE
Q 005254 93 KCLRSWKGH-------DGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 93 ~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
+.+.++.-. ......++|+|||++|+++.. ++.|.+.|..+++.+..+..... ....|++.. .+++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~-~~v~ 234 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPT-VFYM 234 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETT-EEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCc-EEEE
Confidence 998887632 233457899999999999863 57899999999999888774221 334555543 3566
Q ss_pred EecCCeEEEEECCCCeeEEEe----ecccce-EEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 164 GSDDATVRVWDLLAKKCVATL----DKHFSR-VTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~----~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.+.||.+.+.+..+++..... .....+ ...+.|.+++..++.....+.+.+.|....
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 777888888888666554321 111111 123567899888888888899999998654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-08 Score=104.47 Aligned_cols=515 Identities=12% Similarity=0.085 Sum_probs=281.5
Q ss_pred CCEEEEeeCCeEEEEEccCCe-EEEeecCCCccEEEEEEccCCCEEEEEec-cCeEEEEECCCCeE-EEEeeccCCCeEE
Q 005254 31 GSFIACACGESINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGH-SREIRVWDLSTLKC-LRSWKGHDGPAIG 107 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~-~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~~~~v~~ 107 (706)
..+|..+..+.|+..|+.... ....+...-....+|+|++.+..|..+.. .+.|..+++..... ...+...-.....
T Consensus 9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 346778888899999987653 22222233456789999998777776654 67899999876532 2233333357889
Q ss_pred EEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe--cCCeEEEEECCCCeeEEEe
Q 005254 108 MACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS--DDATVRVWDLLAKKCVATL 184 (706)
Q Consensus 108 ~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~ 184 (706)
+++.+.+..|+.+ ...+.|.+.+++.......+...-.....|++.|.+.. |+... ..+.|...++.........
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~--ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGF--MYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTE--EEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCe--EEEeccCCCCEEEEEECCCCceEEEE
Confidence 9999966655554 46788999999865433333344556789999987554 33333 3467777777543333333
Q ss_pred ecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeeec-CcceeeeEEeeCCCCCcccccccccchhhhccccc
Q 005254 185 DKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTVP-TYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRS 262 (706)
Q Consensus 185 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (706)
...-.....+++++++..|+.+. ..+.|...+++......... .......+++..
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~----------------------- 223 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------- 223 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESS-----------------------
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeC-----------------------
Confidence 33445678999999877777665 45678888876533222111 001111222211
Q ss_pred cceEEEEecCCCeEEEEECCCCeEEeeccCcc------ccccccCC---------CccceeEEEE-ccCCCeeEEEeeCC
Q 005254 263 LEIHFITVGERGIVRMWNADSACLYEQKSSDV------TISFEMDD---------SKRGFTAATV-LPSNQGLLCVTADQ 326 (706)
Q Consensus 263 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~---------~~~~~~~~~~-~~~~~~l~~~~~~~ 326 (706)
+..+++-...+.|...|..++.......... .......+ ...+...+++ .|......|.+..|
T Consensus 224 -~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g 302 (619)
T 3s94_A 224 -DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG 302 (619)
T ss_dssp -SEEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTT
T ss_pred -CEEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCch
Confidence 1245555566777777776653221111100 00000000 0111122222 12222233333333
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE-eee-CCcceEEEeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLA-GHSEIVLCLDT 404 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~-~~~-~~~~~i~~~~~ 404 (706)
....- .... +......+|+.+. .+.|+..++....... .+. ..-..+.+++
T Consensus 303 ~~l~~----------------------d~~~---C~~~~~~~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld- 355 (619)
T 3s94_A 303 VKLLE----------------------NGKT---CKDGATELLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAID- 355 (619)
T ss_dssp CCBCT----------------------TSSC---BCSSCSEEEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEE-
T ss_pred heecc----------------------cCcc---cCCCCceEEEEEc-ccceEEEecCCCccceeEEeccccCccEEEE-
Confidence 21100 0000 0111234455444 3677777876553221 111 1223455666
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+.++.++++-...+.|+.++...................+++.+.++++.++-...+.|.+.++....
T Consensus 356 -~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~--------- 425 (619)
T 3s94_A 356 -YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM--------- 425 (619)
T ss_dssp -EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---------
T ss_pred -EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---------
Confidence 7887777566666678899998876544444444446778999998767677777788999999887542
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEE
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIK 561 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 561 (706)
........-.....+++.|....|..... .+.|...++............-.....|++++++..|+.+. ..+.|.
T Consensus 426 -~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~ 504 (619)
T 3s94_A 426 -RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504 (619)
T ss_dssp -CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred -EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEE
Confidence 11222223456789999997445544432 35677666653333323333445678999998777776664 456799
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCe
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE 611 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 611 (706)
..++........+.........++...+ +|.... ..+.|...|..+|.
T Consensus 505 ~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 505 VMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred EEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 9998543332222222222334555433 554443 45677777877774
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-12 Score=123.57 Aligned_cols=240 Identities=11% Similarity=0.003 Sum_probs=163.3
Q ss_pred EEEeeeeeecCCCEEEEE-------eeCCCcEEEEeCCCceEEEEEe----CCCcCeEEEEEecC-CCeEEEEecCCCeE
Q 005254 399 VLCLDTCALSSGKILIVT-------GSKDNSVRLWDSESRCCVGVGT----GHMGAVGAVAFSKK-LQNFLVSGSSDHTI 466 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~l~~~~~d~~i 466 (706)
..++. +.+++.. +++ +..++.|..||..+++...... .+...+.+++++++ +. ++++.. .+.|
T Consensus 20 ~~~~~--~~~~g~l-~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~-~~~l 94 (314)
T 1pjx_A 20 AEGPV--FDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADM-RLGL 94 (314)
T ss_dssp CEEEE--ECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEET-TTEE
T ss_pred ccCce--ECCCCCE-EEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEEC-CCCE
Confidence 34554 6666654 555 5678899999988877644322 24467889999998 65 444443 4478
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC---------------CcEEEEeCCCccEEEE
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD---------------RTACVWRLPDLVSVVT 531 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~ 531 (706)
.+|+.. +...... .... .......+.+++++++|+++++...+ +.|..|+.. ++...
T Consensus 95 ~~~d~~-g~~~~~~-~~~~----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~- 166 (314)
T 1pjx_A 95 LVVQTD-GTFEEIA-KKDS----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ- 166 (314)
T ss_dssp EEEETT-SCEEECC-SBCT----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-
T ss_pred EEEeCC-CCEEEEE-eccC----CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-
Confidence 888876 3210000 0000 00122457899999999888776654 567777765 54433
Q ss_pred EeecCCcEEEEEEc----cCCCEEEEe-cCCCcEEEEEcC-CCce-----EEEEeecc-cCEEEEEEEeCCCEEEEEeCC
Q 005254 532 FRGHKRGIWSVEFS----PVDQVVITA-SGDKTIKIWSIS-DGSC-----LKTFEGHT-SSVLRASFLTRGAQIVSCGAD 599 (706)
Q Consensus 532 ~~~~~~~v~~~~~s----~~~~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d 599 (706)
+..+......++|+ |+++.|+.+ ..++.|.+||+. +++. ...+..+. ..+..++++++|+++++...+
T Consensus 167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 33344557889999 999765554 567899999986 4442 22233333 557889999999988888788
Q ss_pred CCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCc
Q 005254 600 GLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDST 651 (706)
Q Consensus 600 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~ 651 (706)
+.|.+||..+++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998888777777777889999999999955 4555668899999864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-12 Score=116.86 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=154.0
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++++.++++...++.|..||..+++... +. ....+.+++++++++ ++++. ++.|.+||...+.
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~---------- 84 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT-MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQS---------- 84 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE-EE-CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTE----------
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee-CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCc----------
Confidence 677778878888888999999998876532 22 346799999999988 44443 5678899876542
Q ss_pred eeEEEee----cCcceEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE
Q 005254 486 AKAVVAA----HGKDINSLAVAPNDSLVCTGSQD---------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 486 ~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
....... ....+..++++|+|+++++...+ ..-.+|.+........+..+......++|+|+++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly 164 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY 164 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence 1111111 12347889999999977654322 2334555443222333334445678999999998765
Q ss_pred -EecCCCcEEEEEc--CCCceE-----EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE
Q 005254 553 -TASGDKTIKIWSI--SDGSCL-----KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624 (706)
Q Consensus 553 -~~~~dg~i~iwd~--~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 624 (706)
+.+.++.|.+|++ .++... ..+..+...+..+++.++|++.++...++.|..||..+|+.+..+..+...++
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 4556788999997 455432 22222345678899999998888887888999999999999999988878899
Q ss_pred EEEEc-CCCCEEEEEeC
Q 005254 625 ALAVG-KKTEMFATGGS 640 (706)
Q Consensus 625 ~~~~s-~~~~~l~~~~~ 640 (706)
+++|+ ||++.|..++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 88876655443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-11 Score=113.78 Aligned_cols=274 Identities=8% Similarity=-0.038 Sum_probs=185.7
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeE-eeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY-VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR 431 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 431 (706)
...+.++++.+ ++.+.++...++.|..||.. ++... .+......+..+. ..+++.. .++...++.|..+|.. +
T Consensus 19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~--~~~~g~l-~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLI--VSSLGDI-WFTENGANKIGKLSKK-G 92 (300)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE--ECTTSCE-EEEETTTTEEEEECTT-S
T ss_pred CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEE--ECCCCCE-EEEecCCCeEEEECCC-C
Confidence 34566677665 56666666677899999988 44433 2223335566665 6666664 5555567889999988 5
Q ss_pred eEEEE-EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE-EEeecCcceEEEEEcCCCCEE
Q 005254 432 CCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 432 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l 509 (706)
+.... .......+..+++.+++. +.++...++.|..++.. +. ... ........+..+++.++|++.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~----------~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GT----------IYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SC----------EEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CC----------EEEccCCCCCCCceeEEECCCCCEE
Confidence 54322 222446789999999886 66666667888888865 21 111 112234568899999999977
Q ss_pred EEeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE-EeecccCEEEEEEE
Q 005254 510 CTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHTSSVLRASFL 587 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s 587 (706)
++...++.|..+|. +++.... ...+...+..+++++++++.++....+.|.+||. +++.... +..+...+..+++.
T Consensus 161 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred EEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 76666788999998 5544432 2234456899999999988777777778999998 5554332 22345678899999
Q ss_pred eCCCEEEEEeCCCCEEEEECCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 588 TRGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
++|+..++...++.|..||. +++... .+......+.++.++++|++.++.. . .|..++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 99987776666789999998 555432 2333456688999999998666554 4 6666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-12 Score=137.94 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=160.9
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC---------
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--------- 464 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------- 464 (706)
.+..+. ++|+++.++++...+| .|++||+.+++.+... .+...+..++|+|+ + .|+.++.++
T Consensus 164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-S-EEEEEECCCC--------
T ss_pred EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-C-EEEEEEecCccccccccc
Confidence 455666 8899998555554444 5999999999876542 12222357899999 7 454444443
Q ss_pred -----eEEEEEecCCCCCCCcccccceeEEEee--cCcceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCc--cEEE
Q 005254 465 -----TIKVWSFDGLSDDAEQPMNLKAKAVVAA--HGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDL--VSVV 530 (706)
Q Consensus 465 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~ 530 (706)
.|++|++.+... ........ +...+..+.++|||++|+..+.++ .|++||+.++ +...
T Consensus 239 ~~~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS--------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp CCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred CCCCCEEEEEECCCCch--------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 378888754321 01112222 223478999999999998877544 7999999876 3144
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCC----CcEEEEEcCCC--ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGD----KTIKIWSISDG--SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
.+..+...+.... +|+++.|+..+.+ +.|.+||+.++ +....+..+...+..+.++ ++.++++...|+..++
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 5555555555553 4889988877653 45999999874 3344444444556677777 5667788888987777
Q ss_pred EECC-CCeEEEEecc-CCCcEEEEEEcCCCCEEEE----EeCCCcEEEEECCchh
Q 005254 605 WTVR-TGECIATYDK-HEDKIWALAVGKKTEMFAT----GGSDALVNLWHDSTAA 653 (706)
Q Consensus 605 wd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~----~~~dg~i~vw~~~~~~ 653 (706)
|.+. +++....+.. +.+.+..+.++|+++.|+. ....+.|.+||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6544 5666666764 3677899999999886662 2345889999998765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-11 Score=110.50 Aligned_cols=189 Identities=14% Similarity=0.113 Sum_probs=136.3
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCCeEEE-eecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE-Eee
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNASIKS-TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR-SWK 99 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~ 99 (706)
.+++++++|++.++... +.|.+||.. ++... .+..+...+.+++++++|++.++...++.|..||.. ++... .+.
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~ 100 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLP 100 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCC
Confidence 36999999998777654 589999987 65543 233344678999999999987777667899999988 55432 222
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-EeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH-YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.....+..+++++++++.++...++.|..+|.+ ++... .+......+..+++.++++ +.++...++.|..+|. ++
T Consensus 101 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~-~g 176 (300)
T 2qc5_A 101 QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA--LWFTENQNNSIGRITN-TG 176 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TC
T ss_pred CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC--EEEEecCCCeEEEECC-CC
Confidence 244678999999999988877767889999988 65443 2333456789999999876 3555555788999998 55
Q ss_pred eeEEE-eecccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 179 KCVAT-LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 179 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.... ...+...+..+++.++|.+.++....+.|.+|+.
T Consensus 177 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 54432 2234456888999998876665555667777775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=129.40 Aligned_cols=181 Identities=11% Similarity=0.115 Sum_probs=139.9
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC-cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE-QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV 520 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 520 (706)
.++..+++++... ++++|+.++ +.+|++........ ........ ....+.. |+.++| |+++|+++ .++.|++
T Consensus 38 ~~~nlLais~~~g-ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred ccccEEEEcCCCC-EEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 3688899999977 788888774 66698764320000 00001111 2223556 999999 99999999 8899999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG 600 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 600 (706)
||+.+.........|..++.++.+.+. .++++..||.|.+||+.++.... +...|++++|||+| ++.|..||
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence 999888777777788888988887764 38888999999999999887643 45689999999999 78899999
Q ss_pred CEEEEECCCCeE--EEEe------c---cCCCcEEEEEEcCCCCEEEE
Q 005254 601 LVKLWTVRTGEC--IATY------D---KHEDKIWALAVGKKTEMFAT 637 (706)
Q Consensus 601 ~i~iwd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~ 637 (706)
.+++|+...++. ...+ . +|...|.++.|.+++.++++
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999999988875 5666 2 37889999999999999886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=116.33 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=161.4
Q ss_pred cceEEcCCCCEEEE--------eeCCeEEEEEccCCeEEEeec----CCCccEEEEEEccC-CCEEEEEeccCeEEEEEC
Q 005254 23 GPLVVSSDGSFIAC--------ACGESINIVDLSNASIKSTIE----GGSDTITALALSPD-DKLLFSSGHSREIRVWDL 89 (706)
Q Consensus 23 ~~~~~s~dg~~l~~--------~~~~~i~i~d~~~~~~~~~l~----~~~~~i~~l~~s~~-~~~l~s~~~d~~i~iwd~ 89 (706)
..++|+++|+++++ ..++.|.+||..+++...... ++...+.+++++++ |+++++. ..+.|.+||.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~ 99 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQT 99 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEET
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeC
Confidence 47999999998887 445689999988887643322 24567899999999 7655544 3447999999
Q ss_pred CCCeEEEE-eec----cCCCeEEEEECCCCCEEEEecCC---------------CcEEEEECCCCeEEEEeeCCCCcEEE
Q 005254 90 STLKCLRS-WKG----HDGPAIGMACHPSGGLLATAGAD---------------RKVLVWDVDGGFCTHYFKGHKGVVSS 149 (706)
Q Consensus 90 ~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~v~~ 149 (706)
+ ++.... ... ....+.+++++++|++.++...+ +.|..|+.+ ++..... .+......
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~ 176 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNG 176 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEE
T ss_pred C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcce
Confidence 8 765443 221 12458899999999888776554 567777766 5543332 23455688
Q ss_pred EEEc----CCCCceEEEEEecCCeEEEEECC-CCe-----eEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCC
Q 005254 150 ILFH----PDTDKSLLFSGSDDATVRVWDLL-AKK-----CVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 150 ~~~~----~~~~~~~l~~~~~dg~i~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~ 218 (706)
++|+ |+++. ++++...++.|.+||.. +++ ....+..+. ..+..++++++|+++++...++.|.+|+.+
T Consensus 177 i~~~~~~d~dg~~-l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 177 IAVRHMNDGRPYQ-LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECTTSCEEE-EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred EEEecccCCCCCE-EEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 9999 87653 34444567899999986 444 222333343 567889999999888877788999999998
Q ss_pred CCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 219 DYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
+++....+... ..+..+++.+++. ..+++...++.|..|+...
T Consensus 256 ~g~~~~~~~~~~~~~~~i~~~~dg~----------------------~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 GGQPKMRIRCPFEKPSNLHFKPQTK----------------------TIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CBSCSEEEECSSSCEEEEEECTTSS----------------------EEEEEETTTTEEEEEECSS
T ss_pred CCcEeEEEeCCCCCceeEEECCCCC----------------------EEEEEeCCCCeEEEEeCCC
Confidence 77666555443 4566666666653 1345556678888888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-11 Score=118.52 Aligned_cols=298 Identities=8% Similarity=0.020 Sum_probs=180.6
Q ss_pred CCEEEEee-CCeEEEEEccCCeEEEeecCC---------CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 31 GSFIACAC-GESINIVDLSNASIKSTIEGG---------SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 31 g~~l~~~~-~~~i~i~d~~~~~~~~~l~~~---------~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+..++++. ++.|..+|..+++.+-..... ...+.+.- ..++..+++++.++.|..+|.++|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 44555555 458999999999987555432 12232222 22356777888899999999999999887765
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcE-----EEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVV-----SSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
........... +..+++++.++.|..+|..+|+.+.......... ...... + .. ++.+..++.|..+|.
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~~--v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-GA--AVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-TE--EEECCTTTEEEEEET
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-CE--EEEEcCCCEEEEEEC
Confidence 43322222222 4577888889999999999999887776432211 112222 2 33 777888999999999
Q ss_pred CCCeeEEEeecccce----EEE---EEEec--CCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccc
Q 005254 176 LAKKCVATLDKHFSR----VTS---MAITS--DGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~----v~~---~~~~~--~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (706)
.+++.+......... +.. +.-.| .+..++.++.++.+..+|.++++.........
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~---------------- 269 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS---------------- 269 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC----------------
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC----------------
Confidence 999987766432110 000 00011 23456666667777777776655443321100
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 270 -------------------------------------------------------------------------------- 269 (376)
T 3q7m_A 270 -------------------------------------------------------------------------------- 269 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCC-cceEEEeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH-SEIVLCLDTC 405 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~ 405 (706)
...+.. .+..+.+++.++.+..+|..+++........ ........
T Consensus 270 -----------------------------~~~~~~---~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-- 315 (376)
T 3q7m_A 270 -----------------------------VNDFIV---DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV-- 315 (376)
T ss_dssp -----------------------------EEEEEE---ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE--
T ss_pred -----------------------------CCCceE---ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE--
Confidence 000000 2345555666677888888877766555421 11111111
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
. .+.. ++.++.+|.+.++|..+++.+.........+.+.....++ .|+.++.+|.|..|+
T Consensus 316 ~--~~~~-l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 316 L--YNGN-LVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTE-EEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETT--EEEEEBTTSCEEEEE
T ss_pred E--ECCE-EEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECC--EEEEEeCCCEEEEEe
Confidence 1 2445 7888889999999999999888776544443332222233 588888999998886
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-08 Score=99.66 Aligned_cols=501 Identities=9% Similarity=0.006 Sum_probs=280.2
Q ss_pred ceEEcCCCCEEEEeeC--CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEeec
Q 005254 24 PLVVSSDGSFIACACG--ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~--~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+|+|++++..|+.+.. +.|..+++........+.........|++.+.+..|..+ ...+.|.+.++........+..
T Consensus 41 ~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~ 120 (628)
T 4a0p_A 41 ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS
T ss_pred EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC
Confidence 6999998888877754 378889887655444444333456789999876666555 4467899999865433222323
Q ss_pred cCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 101 HDGPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
.-.....|++.|...+|.... ..+.|...+++........ ..-.....+++.++++. ++++-...+.|...|+...
T Consensus 121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~-LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRR-LYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCE-EEEEECCCCEEEEEcCCCC
Confidence 445678999999766666654 2567888888755433333 34567899999997665 3444456788999998654
Q ss_pred eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCCCCcccccccccchhhh
Q 005254 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPGSAFDSFLSSYNQQTIK 257 (706)
Q Consensus 179 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (706)
.. ..+.........+++.. +...++-...+.|...|..+++....+... .....+....+......-.+........
T Consensus 199 ~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~ 276 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCS 276 (628)
T ss_dssp SC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCS
T ss_pred ce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcc
Confidence 43 33433344556777765 344444445788999998777655444322 1233333332221110000000000000
Q ss_pred cccc-ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 258 KKRR-SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 258 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
.... .....+.+.+..|.... ....++ . +.. .++..+....+.-..+...
T Consensus 277 ~~C~~~~~~~~~C~C~~g~~l~-------------------------~d~~~C--~-~~~-~~Ll~s~~~~i~~i~l~~~ 327 (628)
T 4a0p_A 277 HLCLAVPVGGFVCGCPAHYSLN-------------------------ADNRTC--S-APT-TFLLFSQKSAINRMVIDEQ 327 (628)
T ss_dssp SEEEEETTTEEEEECSTTCEEC-------------------------TTSSCE--E-CCS-SEEEEEETTEEEEECCCTT
T ss_pred hhhhcCCCCCeeEEcCCCcEec-------------------------ccCCcC--c-ccc-ceeeeeccceEEEEecccc
Confidence 0000 00001111111111100 000011 1 112 2333444444544433321
Q ss_pred cccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC------CcceEEEeeeeeecCC
Q 005254 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG------HSEIVLCLDTCALSSG 410 (706)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~ 410 (706)
... .. ......-..+..+.|.+.++.++.+-...+.|+.++.........+.. ....+..++ +...+
T Consensus 328 ~~~--~~---~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glA--vD~~~ 400 (628)
T 4a0p_A 328 QSP--DI---ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS--IDIYS 400 (628)
T ss_dssp CCC--CE---ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEE--EETTT
T ss_pred cCc--eE---EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEE--eeccC
Confidence 110 00 011122345778888887777777666778888888765443333322 233566777 77777
Q ss_pred CEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeE
Q 005254 411 KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 411 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+.+..+-+..+.|.+.++.................++++.|....++.+-.... .|...+++... ...
T Consensus 401 ~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~----------~~~ 470 (628)
T 4a0p_A 401 RYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTE----------REV 470 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCS----------CEE
T ss_pred CeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCC----------cEE
Confidence 886777777889999998654333334445677899999995453444433332 45555554321 111
Q ss_pred EEeecCcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
.....-...+.+++.++++.|+.+.. .+.|..+++.... ...+. ........++... +..+.+=...+.|...|..
T Consensus 471 l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 471 LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECc
Confidence 22223345789999998777766654 5789999985443 33333 3344567777765 4555555566778888877
Q ss_pred CCceEEEEee
Q 005254 567 DGSCLKTFEG 576 (706)
Q Consensus 567 ~~~~~~~~~~ 576 (706)
+++....+..
T Consensus 549 ~G~~~~~i~~ 558 (628)
T 4a0p_A 549 GREGRTKVQA 558 (628)
T ss_dssp SSSCCEEEEC
T ss_pred CCCCcEEEec
Confidence 7766555543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-08 Score=102.04 Aligned_cols=498 Identities=10% Similarity=0.012 Sum_probs=266.3
Q ss_pred cceEEcCCCCEEEEeeC--CeEEEEEccCCeE-EEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEe
Q 005254 23 GPLVVSSDGSFIACACG--ESINIVDLSNASI-KSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~--~~i~i~d~~~~~~-~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~ 98 (706)
.+|+|++.+..|+.+.- +.|..+++..... ...+...-.....|++.+.+..|..+ ...+.|.+.+.........+
T Consensus 43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~ 122 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 122 (619)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 36899998888877754 3788888865532 23344333567999999976666555 45789999998754433333
Q ss_pred eccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 99 KGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
...-.....|++.|.+.+|..... .+.|...+++...........-.....+++.++++. ++++-...+.|...|+.
T Consensus 123 ~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~-LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 123 WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK-LYWADAKLNFIHKSNLD 201 (619)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE-EEEEETTTCCEEEESSS
T ss_pred eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCE-EEEEeCCCCeEEEecCC
Confidence 334456778999998776666542 466777777654433333334556899999997665 34444566789999886
Q ss_pred CCeeEEEeecccceEEEEEEecCCCEEEEE-eCCCEEEEEeCCCCcceeeecCc-ceeeeEEeeCCC-CCcccccccccc
Q 005254 177 AKKCVATLDKHFSRVTSMAITSDGSTLISA-GRDKVVNLWDLRDYSCKLTVPTY-EMVEAVCAIPPG-SAFDSFLSSYNQ 253 (706)
Q Consensus 177 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 253 (706)
.........+.......+++..+ .|+.+ ...+.|...|..+++....+... .....+...... .......+....
T Consensus 202 G~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~n 279 (619)
T 3s94_A 202 GTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 279 (619)
T ss_dssp CCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTG
T ss_pred CCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCC
Confidence 54333222222223346666555 44444 45678888888777655444332 123333332211 100000000000
Q ss_pred hhhhcccc--ccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 254 QTIKKKRR--SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 254 ~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
........ .......+.+..|.. ... ...+ ..+..+.++..+..+.+...
T Consensus 280 g~Cs~lCl~~~~~~~~~C~C~~g~~-----------------------l~~--d~~~---C~~~~~~~Ll~~~~~~i~~i 331 (619)
T 3s94_A 280 GGCSHLCLMSPVKPFYQCACPTGVK-----------------------LLE--NGKT---CKDGATELLLLARRTDLRRI 331 (619)
T ss_dssp GGCSSEEEECSSTTSEEEECCTTCC-----------------------BCT--TSSC---BCSSCSEEEEEEESSCEEEE
T ss_pred CcccceEECCCCCCCceEeCCchhe-----------------------ecc--cCcc---cCCCCceEEEEEcccceEEE
Confidence 00000000 000001111111110 000 0000 00112334455555666666
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
.+......... .....-..+..++|.+.++.++.+-...+.|+.+++........+.........++ +...++
T Consensus 332 ~l~~~~~~~~~-----~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA--vD~~~~ 404 (619)
T 3s94_A 332 SLDTPDFTDIV-----LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA--VDWVAR 404 (619)
T ss_dssp ESSSTTCCCEE-----CCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE--EETTTT
T ss_pred ecCCCccceeE-----EeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE--EecccC
Confidence 55433211110 00111234677888876777777766778899998876544434443334455666 666677
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeEEE
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 490 (706)
.+..+-...+.|.+.++............-....++++.|....+.++- +....|...+++... .....
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~----------~~~l~ 474 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD----------RVVLV 474 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----------CEEEE
T ss_pred cEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc----------cEEEE
Confidence 7666666778999998876543333444556788999999755344443 223566666655431 11122
Q ss_pred eecCcceEEEEEcCCCCEEEEee-CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc
Q 005254 491 AAHGKDINSLAVAPNDSLVCTGS-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS 569 (706)
Q Consensus 491 ~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 569 (706)
...-...+.+++++++..|+.+. ..+.|..+++........+.........++...+ ...++-...+.|...|..++.
T Consensus 475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 22345678999998776666655 4567888988644333222222222334555433 333444445667777776663
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-12 Score=121.21 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=138.9
Q ss_pred ceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccC--eEEEEECCCCeEEEEe--
Q 005254 24 PLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSR--EIRVWDLSTLKCLRSW-- 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~-- 98 (706)
.|+++++|+++++...+ .|++||+.+++..........+ . ++|+|+++.|+++..++ .|.+|+..++.....+
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence 69999999977666554 8999999888876655543333 3 99999999999887765 8999998766544444
Q ss_pred --eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE----eeCCCCcE-E-EEEEcCCCCceEEEEEecCCeE
Q 005254 99 --KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY----FKGHKGVV-S-SILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 99 --~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v-~-~~~~~~~~~~~~l~~~~~dg~i 170 (706)
......+.+++++|++..|+++..++.|+.||.+++..... ..++...- . .++|+|++.. ++++...++.|
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~-lyv~d~~~~~I 291 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN-FYMSDQNLSSV 291 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE-EEEEETTTTEE
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE-EEEEeCCCCEE
Confidence 22456778999999655666677788999999987764332 22222222 3 9999996443 46666778899
Q ss_pred EEEECCCCeeEEEeeccc---------------ceEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcc
Q 005254 171 RVWDLLAKKCVATLDKHF---------------SRVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSC 222 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~ 222 (706)
+.|+.... +..+.++. .....++++++|+++++-. .++.|+.|++.++..
T Consensus 292 ~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 292 YKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 99997543 23332322 3478999999999666666 788999999877654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-11 Score=117.20 Aligned_cols=237 Identities=10% Similarity=0.048 Sum_probs=161.5
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC--eEEEEEecCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLS 475 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~ 475 (706)
....++ +.+++. ++++...++.|+.||..++.......... ... ++|+++++ .|+++..++ .|.+++.....
T Consensus 132 ~P~~la--~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 132 YMWGIA--AVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CEEEEE--ECSTTE-EEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTT
T ss_pred CceEEE--EeCCCC-EEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCc
Confidence 455665 666665 47777778999999999887776655433 333 99999988 666666654 78888775432
Q ss_pred CCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE----EeecCCcE--EEEEEccC-
Q 005254 476 DDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT----FRGHKRGI--WSVEFSPV- 547 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~s~~- 547 (706)
. ......... ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+
T Consensus 206 ~-------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 206 A-------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp C-------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred e-------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 1 000001111 345678899999555555577788999999987754332 22222222 28999995
Q ss_pred CCEEEEecCCCcEEEEEcCCCceEEEEeecc---------------cCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCe
Q 005254 548 DQVVITASGDKTIKIWSISDGSCLKTFEGHT---------------SSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGE 611 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 611 (706)
+.++++-..++.|+.|+... + +..+.++. .....++++++|+++++-. .++.|+.|++.+++
T Consensus 279 g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 56666666788999999753 3 33443332 3478999999999777777 78999999988887
Q ss_pred EEEEeccC---------------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 612 CIATYDKH---------------EDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 612 ~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.. .+.++ -.....+++++++.++++-..++.|+.++++
T Consensus 357 v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 357 VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 43 33333 2458899999998888888888888887753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-11 Score=126.33 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=178.1
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCC-c----ceEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGH-S----EIVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVG 435 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~----~~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~ 435 (706)
..+++++.++.+..+|..+++.+..+... . ..+..- ....+.. +++++. ++.|+.+|..+++.+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~---p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA---PRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC---CEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC---cEEECCE-EEEEecccccCCCCEEEEEECCCCcEEE
Confidence 35566666777888888777777666544 1 111111 1112344 444443 6899999999999987
Q ss_pred EEeCCCcC--------------------------------eEEEEEecCCCeEEEEecCCC-------------------
Q 005254 436 VGTGHMGA--------------------------------VGAVAFSKKLQNFLVSGSSDH------------------- 464 (706)
Q Consensus 436 ~~~~~~~~--------------------------------v~~~~~~~~~~~~l~~~~~d~------------------- 464 (706)
.+...... ...+++++++. +++.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeE
Confidence 76542211 12467888866 666665553
Q ss_pred eEEEEEecCCCCCCCcccccceeEEEee--c-------CcceEEEEEcCCC---CEEEEeeCCCcEEEEeCCCccEEEEE
Q 005254 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPND---SLVCTGSQDRTACVWRLPDLVSVVTF 532 (706)
Q Consensus 465 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 532 (706)
.|..+|..+++ ....... | ......+....+| ..++.++.+|.++++|..+++.+..+
T Consensus 284 sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 284 SIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 47777777653 2222221 1 1122233344477 68999999999999999999998776
Q ss_pred eecC-----------CcE------------------------EEEEEccCCCEEEEecC---------------------
Q 005254 533 RGHK-----------RGI------------------------WSVEFSPVDQVVITASG--------------------- 556 (706)
Q Consensus 533 ~~~~-----------~~v------------------------~~~~~s~~~~~l~~~~~--------------------- 556 (706)
+... .++ ..++++|+..++++...
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 5321 011 14688998888877532
Q ss_pred ----------------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 557 ----------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 557 ----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.|.|..||+.+++.+..+. +..++....++.++..++.++.||.+++||..+|+.+.
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 2789999999999988876 44455566778888899999999999999999999999
Q ss_pred EeccCC-CcEEEEEEcCCCCEEE-EEeC----------------CCcEEEEECCc
Q 005254 615 TYDKHE-DKIWALAVGKKTEMFA-TGGS----------------DALVNLWHDST 651 (706)
Q Consensus 615 ~~~~~~-~~v~~~~~s~~~~~l~-~~~~----------------dg~i~vw~~~~ 651 (706)
.+.... ..-..+.+..+|+.++ +.+. .+.+..|.+..
T Consensus 513 ~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred eeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 987433 2234456667887444 3222 47888998873
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.5e-11 Score=114.00 Aligned_cols=307 Identities=10% Similarity=0.055 Sum_probs=187.5
Q ss_pred CCEEEEEeccCeEEEEECCCCeEEEEeeccC---------CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC
Q 005254 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHD---------GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG 142 (706)
Q Consensus 72 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~ 142 (706)
+..+++++.++.|..+|.++|+.+....... ..+.+. ...++..+++++.++.|..+|.++|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 6678888889999999999999987776431 223222 222456788888899999999999998877664
Q ss_pred CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceE-----EEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRV-----TSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 143 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
........... + .. ++.++.++.|..+|..+++.+.......... ...... +..+++++.++.+..+|.
T Consensus 132 ~~~~~~~p~~~-~-~~--v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 132 AGEALSRPVVS-D-GL--VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp SSCCCSCCEEE-T-TE--EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCceEcCCEEE-C-CE--EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 33222222222 2 33 7888899999999999999887765432211 112222 346888888999999999
Q ss_pred CCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccc
Q 005254 218 RDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297 (706)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 297 (706)
.+++................ . ++.+
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~---~-----------------------------------~~~~----------------- 230 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEI---D-----------------------------------RLSD----------------- 230 (376)
T ss_dssp TTCCEEEEEECCC-------------------------------------------------C-----------------
T ss_pred CCCcEEEEEecccCCCCccc---c-----------------------------------cccc-----------------
Confidence 88876655432211000000 0 0000
Q ss_pred cccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCc
Q 005254 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 377 (706)
....++ . .+..+.+++.++.
T Consensus 231 -----------------------------------------------------~~~~p~----~---~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 231 -----------------------------------------------------VDTTPV----V---VNGVVFALAYNGN 250 (376)
T ss_dssp -----------------------------------------------------CCCCCE----E---ETTEEEEECTTSC
T ss_pred -----------------------------------------------------cCCCcE----E---ECCEEEEEecCcE
Confidence 000000 0 1245555666778
Q ss_pred EEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEecCCCeE
Q 005254 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQNF 456 (706)
Q Consensus 378 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 456 (706)
+..+|..+++......... ...+ ...+.. +..++.++.+..+|..+++.+..... ....+....... . .
T Consensus 251 l~~~d~~tG~~~w~~~~~~--~~~~----~~~~~~-l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~-~ 320 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRELGS--VNDF----IVDGNR-IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYN--G-N 320 (376)
T ss_dssp EEEEETTTCCEEEEECCCC--EEEE----EEETTE-EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEET--T-E
T ss_pred EEEEECCCCcEEeeccCCC--CCCc----eEECCE-EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEEC--C-E
Confidence 8888888877665544322 2222 123555 77778899999999999998877652 222333333332 2 6
Q ss_pred EEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE-EEEcCCCCEEEEeeCCCcEEEEe
Q 005254 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS-LAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 457 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
++.++.+|.+..+|..+++ ...........+.. ... .+..|++++.+|.|+.|+
T Consensus 321 l~v~~~~g~l~~~d~~tG~----------~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 321 LVVGDSEGYLHWINVEDGR----------FVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEECTTSEEEEEETTTCC----------EEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCc----------EEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 8888899999999987764 22222222222221 222 245778888999999886
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-10 Score=109.15 Aligned_cols=216 Identities=11% Similarity=-0.034 Sum_probs=149.2
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.++++.++++...++.|..||..+++... +. ....+.+++++++++ ++++. .+ .|.+||...+.
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~---------- 120 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGV---------- 120 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCC----------
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCc----------
Confidence 778777778888888999999998876543 22 346799999999987 44443 33 48888876542
Q ss_pred eeEEEe----ecCcceEEEEEcCCCCEEEEeeC------CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEe-
Q 005254 486 AKAVVA----AHGKDINSLAVAPNDSLVCTGSQ------DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA- 554 (706)
Q Consensus 486 ~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 554 (706)
...... .....+..++++|+|+++++... .+.|..++ +++.. .+..+......++|+|+++.|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEE
Confidence 111111 11235789999999997765442 24566666 44433 333344557889999999876554
Q ss_pred cCCCcEEEEEcC--CC-ce-----EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 555 SGDKTIKIWSIS--DG-SC-----LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 555 ~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
+.++.|.+||+. ++ +. ...+......+..+++.++|++.++...++.|.+||. +++.+..+..+...++++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 557889999986 55 32 2222223345678999999988877777788999998 688888887777789999
Q ss_pred EEc-CCCCEEEEEeC
Q 005254 627 AVG-KKTEMFATGGS 640 (706)
Q Consensus 627 ~~s-~~~~~l~~~~~ 640 (706)
+|+ ++++.|.+++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88876655443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-11 Score=113.34 Aligned_cols=224 Identities=14% Similarity=0.076 Sum_probs=154.4
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
...... +.++++.++++...++.|..|+. +++ ...+..+...+..++++++|+ ++++...++.|..|+.. +.
T Consensus 46 ~~egp~--~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 46 WSEGPA--WWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp SEEEEE--EEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SC--
T ss_pred CccCCe--EeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CC--
Confidence 334444 78888877888888999999998 444 344455667789999999987 66665666789998864 21
Q ss_pred CCcccccceeEEEe----ecCcceEEEEEcCCCCEEEE----eeC-------------CCcEEEEeCCCccEEEEEeecC
Q 005254 478 AEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCT----GSQ-------------DRTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 478 ~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 536 (706)
...... .....+..++++|+|+++++ |.. .+.|..+|..+++..... ..
T Consensus 118 --------~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 118 --------AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp --------EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred --------EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 111111 11234678999999998886 332 246778887666554433 34
Q ss_pred CcEEEEEEccCCCEEEEecCC------CcEEEEEcCCCceE--EEE-eecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 537 RGIWSVEFSPVDQVVITASGD------KTIKIWSISDGSCL--KTF-EGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 537 ~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.....++|+||++.|+.+... +.|.+|++..+... ..+ .........+++.++|++.++ +.+| |.+|+.
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~~~ 265 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVFDS 265 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEECT
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEECC
Confidence 557889999999988777665 68999998765411 111 112234456889999985444 4554 999998
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCc
Q 005254 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDAL 643 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 643 (706)
+++.+..+..+. .+..++|+++++.|..++.++.
T Consensus 266 -~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 -DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred -CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 688887777655 5889999999988887777653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-11 Score=125.27 Aligned_cols=259 Identities=11% Similarity=0.029 Sum_probs=164.5
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCC--cceEEEeeeeeecCCCEEEEEee------CCCcEEEEeCCCceEEEEEe
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 438 (706)
..+++++.++.+..+|..+++.+...... ......+.....-.+.. ++++. .+|.|+.||..+++.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 34555666677777777777766555432 10000000000011334 44443 36899999999999887765
Q ss_pred CCC-------------------------------cCeEEEEEecCCCeEEEEecCCCe-------------------EEE
Q 005254 439 GHM-------------------------------GAVGAVAFSKKLQNFLVSGSSDHT-------------------IKV 468 (706)
Q Consensus 439 ~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~d~~-------------------i~i 468 (706)
... .....++++|+.. +++.+..++. |..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 210 0112577888766 6777776653 888
Q ss_pred EEecCCCCCCCcccccceeEEEee--c-------CcceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecC
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAA--H-------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK 536 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 536 (706)
+|..+++ ....... | ..++.......+|+ .++.++.+|.++++|..+++.+...+...
T Consensus 280 lD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~ 349 (689)
T 1yiq_A 280 VNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP 349 (689)
T ss_dssp EETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEccCCc----------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccc
Confidence 8888764 2222221 1 11222223333565 78899999999999999999875433111
Q ss_pred C---------------------------------------cEEEEEEccCCCEEEEecC---------------------
Q 005254 537 R---------------------------------------GIWSVEFSPVDQVVITASG--------------------- 556 (706)
Q Consensus 537 ~---------------------------------------~v~~~~~s~~~~~l~~~~~--------------------- 556 (706)
. .-..++|+|+..++++...
T Consensus 350 ~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~ 429 (689)
T 1yiq_A 350 QSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSM 429 (689)
T ss_dssp CSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTS
T ss_pred cccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccc
Confidence 0 0012688888887776521
Q ss_pred ------------------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 557 ------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 557 ------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
+|.|+.||+.+++.+..+..+. +.....++..+.++++++.||.|+.||.++|+.
T Consensus 430 ~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 430 YQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 3789999999999988877543 344456777888999999999999999999999
Q ss_pred EEEeccCCCc-EEEEEEcCCCCE-EEEE
Q 005254 613 IATYDKHEDK-IWALAVGKKTEM-FATG 638 (706)
Q Consensus 613 ~~~~~~~~~~-v~~~~~s~~~~~-l~~~ 638 (706)
+..++...+. ...+.|..+|+. +++.
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 9988754332 244667778874 4443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-11 Score=124.11 Aligned_cols=378 Identities=11% Similarity=0.076 Sum_probs=211.8
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc----------E-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT----------I-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~----------i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-.++.+... + ..+++ ++..|++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 444444444458999999999988766543210 0 11222 3567888889999999999999999887
Q ss_pred ecc--CCCeEEEEECC---CCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC-----------------------
Q 005254 99 KGH--DGPAIGMACHP---SGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK----------------------- 144 (706)
Q Consensus 99 ~~~--~~~v~~~~~s~---~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~----------------------- 144 (706)
... ......+..+| ++ .+++++ .++.|..||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111112222 44 444443 36899999999999987765210
Q ss_pred --------CcEEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-------
Q 005254 145 --------GVVSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF------- 188 (706)
Q Consensus 145 --------~~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~------- 188 (706)
.....+++.|+.+. ++.+..++ .|..||..+|+.+..++. |.
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~--vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNL--LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eeecCCCCccccceeEcCCCCE--EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 01125778887655 77776665 399999999999887754 21
Q ss_pred ceEEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccc
Q 005254 189 SRVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 189 ~~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
.+........+|+ .++.++.+|.++++|.++++.+...+...........+ .+.... ....... .....
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~------~~~~~~~-~~~~~ 377 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL------DEENAAY-WKNGK 377 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE------CHHHHCT-TTSSS
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc------chhhccc-cCCCC
Confidence 1222223333665 78889999999999999999876654332110000000 000000 0000000 00000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
..++ +...........+++.|+...+++...+.....+.....+. .
T Consensus 378 ~~~~-----------------------------~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~--~--- 423 (689)
T 1yiq_A 378 RNLV-----------------------------TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPK--R--- 423 (689)
T ss_dssp CEEE-----------------------------SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCC--C---
T ss_pred eeEe-----------------------------CCCcccccCCCcceECCCCCEEEEeccccceeeeecccccc--c---
Confidence 0000 00011112234467888888777777665555443221100 0
Q ss_pred EeeEecccCcee-eE--eeEeCCC--CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC
Q 005254 345 LSKRLVGYNEEI-LD--LKFLGEE--EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK 419 (706)
Q Consensus 345 ~~~~~~~~~~~v-~~--~~~~~~~--~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 419 (706)
......+ .. +...|.. +........+|.+..||+.+++.......+...... . +...+.. ++.++.
T Consensus 424 -----~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g-~--~~taggl-vf~gt~ 494 (689)
T 1yiq_A 424 -----NPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGG-T--LSTAGNL-VFEGSA 494 (689)
T ss_dssp -----CSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCC-E--EEETTTE-EEEECT
T ss_pred -----cccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCc-c--ceECCCE-EEEECC
Confidence 0000000 00 0000000 000000001378999999999988877655432211 1 4445665 788899
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecCCCeEEEEecC
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGSS 462 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~ 462 (706)
||.++.||.++++.+..++...+. ...+.|..+|+.++++.+.
T Consensus 495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 999999999999999888755333 3457778888877766544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-10 Score=105.73 Aligned_cols=226 Identities=9% Similarity=-0.024 Sum_probs=157.3
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV 434 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 434 (706)
-.-+..|.+.++.++.+....+.|..||..++... .+. ....+.++. +.++++. +++ . ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~--~~~dG~l-~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVA--LRQSGGY-VAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEE--EBTTSSE-EEE-E-TTEEEEEETTTTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEE--ECCCCCE-EEE-E-CCeEEEEECCCCcEE
Confidence 34467777777788888888899999999887653 222 235677776 7788874 443 3 568999999888755
Q ss_pred EEEeC----CCcCeEEEEEecCCCeEEEEecC---------CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 435 GVGTG----HMGAVGAVAFSKKLQNFLVSGSS---------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 435 ~~~~~----~~~~v~~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
..... ....+..++++|+|+ ++++... ...-.+|.+.... ..............++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------~~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH----------HVKKYFDQVDISNGLD 155 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS----------CEEEEEEEESBEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC----------CEEEEeeccccccceE
Confidence 44332 234578899999988 4444322 2334666665321 1111222334567899
Q ss_pred EcCCCCEEEE-eeCCCcEEEEeC--CCccEE-----EEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 502 VAPNDSLVCT-GSQDRTACVWRL--PDLVSV-----VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 502 ~s~~~~~l~~-~~~dg~i~i~d~--~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
|+||++.|+. .+.++.|.+|++ .++... ..+..+...+..++++++|++.++....+.|.+||..+++.+..
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 9999987654 455788999987 455432 22233445678999999998888877788899999988999999
Q ss_pred EeecccCEEEEEEE-eCCCEEEEEeC
Q 005254 574 FEGHTSSVLRASFL-TRGAQIVSCGA 598 (706)
Q Consensus 574 ~~~~~~~i~~~~~s-~~~~~l~~~~~ 598 (706)
+..+...+++++|. |+++.|+.++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 88777789999999 88887766554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=123.54 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=138.7
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
+..++.++.+..+|.. ++...........+.++...+++. +..++.++.+..+|.. +. ........
T Consensus 110 l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~----------~~~~~~~~ 175 (330)
T 3hxj_A 110 LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT----------EKWRFKTN 175 (330)
T ss_dssp EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC----------EEEEEECS
T ss_pred EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC----------EeEEEecC
Confidence 4444455556666655 444444443444445555555554 5556666777777765 32 22222233
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEE
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 573 (706)
...+.++.+.+++.+.+.. +.+..+| .+++...........+.++...+++. |..++.++.+..+|. +++.+..
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE
T ss_pred CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE
Confidence 4456667777777755544 7799999 77777777766666788888888876 445566777888874 6666666
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchh
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAA 653 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 653 (706)
+......+..+.+.+++ .|..++.+|.|..+|. +++.+..+......+.++..+++++ |..++.+|.+.+...+..+
T Consensus 250 ~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred eeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 65443333445554455 6677788888999996 7887777766566677888878886 4558889999998766554
Q ss_pred H
Q 005254 654 E 654 (706)
Q Consensus 654 ~ 654 (706)
.
T Consensus 327 ~ 327 (330)
T 3hxj_A 327 H 327 (330)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-12 Score=116.96 Aligned_cols=164 Identities=12% Similarity=-0.028 Sum_probs=115.6
Q ss_pred eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----------ccCeEEEEECCCCeEEEEeecc-------CC
Q 005254 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----------HSREIRVWDLSTLKCLRSWKGH-------DG 103 (706)
Q Consensus 41 ~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~-------~~ 103 (706)
.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.+||..+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999988766667 799999999999886 3688999999999999998743 12
Q ss_pred CeEEEEECCCCCEEEEecC--CCcEEE--EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC--
Q 005254 104 PAIGMACHPSGGLLATAGA--DRKVLV--WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-- 177 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~~--d~~i~v--w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 177 (706)
....++|+|||++++++.. +..+.+ +|..+ +..+.. .+. ..+.|+++.. +++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~-~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAAT-HYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTE-EECCCCTTSCEEEECCSSC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeE-EEEEcCCCCEEEEECcccc
Confidence 3568999999999998864 467888 88877 344432 111 2234565553 45666788888888876
Q ss_pred ---CeeEEE----eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 178 ---KKCVAT----LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 178 ---~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++.... +.....+. . ++++..++..+. +.+.+.|...
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~ 240 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPA 240 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCS
T ss_pred ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCC
Confidence 443211 11112233 3 666666666666 8888888754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-10 Score=120.10 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=130.6
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc-----------EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT-----------ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~-----------i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-.++..... -..+++ ++..|++++.|+.|..+|.++|+.+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 454444444468999999999988666543210 112333 4667888889999999999999999988
Q ss_pred ecc-C----CCeEE-EEECCCCCEEEEecC------CCcEEEEECCCCeEEEEeeCCCCc--------------------
Q 005254 99 KGH-D----GPAIG-MACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYFKGHKGV-------------------- 146 (706)
Q Consensus 99 ~~~-~----~~v~~-~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~-------------------- 146 (706)
..+ . ..+.+ ... .+..+++++. ++.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 2 11211 111 2345555543 689999999999998877542211
Q ss_pred ------------EEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-----
Q 005254 147 ------------VSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF----- 188 (706)
Q Consensus 147 ------------v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~----- 188 (706)
...+++.|+++. ++.+..++ .|..+|..+|+.+..++. |.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~--vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNT--MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred CceeEeCCCcccccceeEcCCCCE--EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 135678887665 55555443 599999999999877653 21
Q ss_pred --ceEEEEEEecCC---CEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 189 --SRVTSMAITSDG---STLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 189 --~~v~~~~~~~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
.....+....+| ..++.++.+|.++++|..+++.+...+.
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 122233444577 6889999999999999999998776543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=114.51 Aligned_cols=294 Identities=9% Similarity=-0.042 Sum_probs=170.4
Q ss_pred eEEEEEecCC----eEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEe----------CCCEEEEEeCCCCccee
Q 005254 159 SLLFSGSDDA----TVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAG----------RDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 159 ~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~~w~~~~~~~~~ 224 (706)
.++++...++ .|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||..+++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3455555455 8889999999999998766566 799999999999886 36899999999998887
Q ss_pred eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCc
Q 005254 225 TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSK 304 (706)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (706)
.++........ ..
T Consensus 111 ~I~v~~~~~~~-------------------------------------------------------------------~g 123 (368)
T 1mda_H 111 DIELPDAPRFS-------------------------------------------------------------------VG 123 (368)
T ss_dssp EEEETTSCSCC-------------------------------------------------------------------BS
T ss_pred EEECCCccccc-------------------------------------------------------------------cC
Confidence 76532100000 00
Q ss_pred cceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEE--Ee
Q 005254 305 RGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV--YD 382 (706)
Q Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~--~d 382 (706)
.....+.++|+++.+++.... ....+.+ +|
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~------------------------------------------------~~~~v~V~~iD 155 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFG------------------------------------------------SSAAAGLSVPG 155 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECS------------------------------------------------SSCEEEEEETT
T ss_pred CCcceEEEcCCCCEEEEEccC------------------------------------------------CCCeEEEEEEc
Confidence 011223334444443333221 0123444 44
Q ss_pred CCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC-----ceEEEE----EeCCCcCeEEEEEecCC
Q 005254 383 LSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES-----RCCVGV----GTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 383 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~----~~~~~~~v~~~~~~~~~ 453 (706)
..+ ...+.... +.. ..|+++..+++.+.||.+.+.++.+ ++.... +.....+. + .+++
T Consensus 156 ~~t---v~~i~v~~----~~~--~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 156 ASD---DQLTKSAS----CFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp TEE---EEEEECSS----CCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred hhh---ceEEECCC----ceE--EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 443 11221110 011 2344444466667788888888876 433211 11112222 3 5665
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCccccccee--EEEeecCcceEEEEEcCCCCEEEEeeC-C--------CcEEEEe
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAK--AVVAAHGKDINSLAVAPNDSLVCTGSQ-D--------RTACVWR 522 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--------g~i~i~d 522 (706)
..+++ .+. +.+.+.|+................ ............++++||++.++++.. + +.+.++|
T Consensus 223 ~~~~~-vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD 300 (368)
T 1mda_H 223 GMLVW-AVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TEEEE-CBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred CEEEE-EcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEE
Confidence 53444 444 889999986432100000000000 000000111222689999998887643 2 3567999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCC-EEEEec-CCCcEEEEEcCCCceEEEEeecccCEEEEEE
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITAS-GDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 586 (706)
+.+.+.+..+.... ....++|+||++ .+++.. .++.|.++|+.+++.+.++.....+ ..+++
T Consensus 301 ~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P-~~i~~ 364 (368)
T 1mda_H 301 ASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSV 364 (368)
T ss_dssp SSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC-CEEEC
T ss_pred CCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC-CEEEe
Confidence 99999988887544 578999999998 455665 5899999999999999998754432 34444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.2e-12 Score=118.64 Aligned_cols=184 Identities=12% Similarity=0.171 Sum_probs=125.9
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
.+.++..+|.+.+...++.|..|| .+++.+.....+...+.++...++|.+.+ ++.+ |..+|. +++.+..+....
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC--
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCC
Confidence 357777788766555566899999 88888766665556678888888886444 4444 888886 676655554333
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEE
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVA 182 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 182 (706)
.......+. +..|.+++.++.|..+|.+ ++.......+...+.++...+++. ++.++.++.|..+|.. ++...
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~ 170 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKW 170 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeE
Confidence 333333333 5567778888999999998 777776665656666777776655 7778888999999998 87776
Q ss_pred EeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc
Q 005254 183 TLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~ 222 (706)
.+......+.++.+.+++. ++.++ +.|..+| .+++.
T Consensus 171 ~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 171 RFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp EEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCE
T ss_pred EEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcE
Confidence 6665555667777777776 44444 6688888 55443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=126.69 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=133.3
Q ss_pred ceEEcCCCCEEEEeeC------CeEEEEEccCCeEEEe-ecCCCccEEEEEEccCCCEEEEEeccC-------------e
Q 005254 24 PLVVSSDGSFIACACG------ESINIVDLSNASIKST-IEGGSDTITALALSPDDKLLFSSGHSR-------------E 83 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~------~~i~i~d~~~~~~~~~-l~~~~~~i~~l~~s~~~~~l~s~~~d~-------------~ 83 (706)
.++|||||++||++.+ ..|+++|+.+++.+.. +.+ .....++|+ ||+.|+.++.+. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 5799999999998653 1699999999986543 211 113578999 999999887763 4
Q ss_pred EEEEECCCCe----EEEEeec-cCCCeEEEEECCCCCEEEEec----CCCcEEEEECCCCe-EEEEeeCCCCcEEEEEEc
Q 005254 84 IRVWDLSTLK----CLRSWKG-HDGPAIGMACHPSGGLLATAG----ADRKVLVWDVDGGF-CTHYFKGHKGVVSSILFH 153 (706)
Q Consensus 84 i~iwd~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~ 153 (706)
|++|++.++. ++..... |...+..+.|||||++|+... ..+.|+++|++++. ....+..+....... ++
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~ 288 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD 288 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence 9999998764 3444444 555678999999999987643 23589999998763 344555566555554 66
Q ss_pred CCCCceEEEEEec---CCeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCC---EEEEEeCCCCc
Q 005254 154 PDTDKSLLFSGSD---DATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDK---VVNLWDLRDYS 221 (706)
Q Consensus 154 ~~~~~~~l~~~~~---dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~w~~~~~~ 221 (706)
++++.. ++.... .+.|..+|+.++.. ...+..|...+. .|+++++.|+....++ .|++|++..+.
T Consensus 289 ~~g~~l-~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 289 NKGSTL-YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EETTEE-EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred ccCCEE-EEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 776663 333333 36899999987654 344555655554 8999998887766544 78899987543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-09 Score=102.68 Aligned_cols=223 Identities=11% Similarity=0.034 Sum_probs=149.0
Q ss_pred eEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 357 LDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
....|.++++.++.+...++.|..||..+++... +. ....+.++. +.++++. +++ +. ..|.+||..+++....
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~--~~~dg~l-~v~-~~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALA--KISDSKQ-LIA-SD-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEE--EEETTEE-EEE-ET-TEEEEEETTTCCEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEE--EeCCCeE-EEE-EC-CCEEEEECCCCcEEEE
Confidence 4567777677788888788999999998876542 22 234677776 6777765 443 33 4599999988875443
Q ss_pred EeC----CCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 437 GTG----HMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 437 ~~~----~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
... ....+..++++|+|+ ++++...+ +...+|.+..+ ..............++|+||++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g-----------~~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG-----------KVTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT-----------EEEEEEEEESSEEEEEECTTSCE
T ss_pred eeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCC-----------cEEEeeCCCcccCCeEEcCCCCE
Confidence 321 124688999999987 44443221 23444544422 11112223345678999999987
Q ss_pred EEEe-eCCCcEEEEeCC--Cc-c-----EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 509 VCTG-SQDRTACVWRLP--DL-V-----SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 509 l~~~-~~dg~i~i~d~~--~~-~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
++.+ +.++.|.+|++. ++ . ....+......+..++++++|.++++...++.|.+||. +++.+..+..+..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 7655 456889999985 55 2 12222223456788999999988777766788999998 6777777776767
Q ss_pred CEEEEEEE-eCCCEEEEEeCC
Q 005254 580 SVLRASFL-TRGAQIVSCGAD 599 (706)
Q Consensus 580 ~i~~~~~s-~~~~~l~~~~~d 599 (706)
.+++++|+ ++++.|++++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEBC
T ss_pred CcEEEEEecCCCCEEEEEecC
Confidence 89999999 888877655543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=122.24 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=158.9
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-------
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD------- 463 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 463 (706)
+...+..+. ++|+++.++++.+.. ..|++||+.+++.+... ........++|+ |++. |+.++.+
T Consensus 127 ~~~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEG-FFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTE-EEEEESSCCC----
T ss_pred CcEEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCE-EEEEEecCcccccc
Confidence 334556665 899999855554433 46999999999866531 111123578899 9884 4444444
Q ss_pred ------CeEEEEEecCCCCCCCcccccceeEEEee---cCcceEEEEEcCCCCEEEEeeC----CCcEEEEeCCCcc-EE
Q 005254 464 ------HTIKVWSFDGLSDDAEQPMNLKAKAVVAA---HGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLV-SV 529 (706)
Q Consensus 464 ------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~-~~ 529 (706)
..|++|++...... ....... +......+.++|||++|+.... ++.|+++|+.++. ..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~--------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQED--------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp ---CCCCEEEEEETTSCGGG--------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred cccCCCcEEEEEECCCCccc--------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 34888887654210 1122221 2345678999999998865442 3589999997763 34
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEec-CC---CcEEEEEcCCCce--EEEEeecccCEEEEEEEeCCCEEEEEeCCC---
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITAS-GD---KTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADG--- 600 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--- 600 (706)
..+..+....... +++++..|+..+ .+ +.|..+|+.++.. ...+..|...+. .|++++++|+....++
T Consensus 274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence 5555566665555 666666655443 33 6799999987754 345666666665 8999999887766544
Q ss_pred CEEEEECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCchh
Q 005254 601 LVKLWTVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD----ALVNLWHDSTAA 653 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~ 653 (706)
.|++||+..+. ...+. .+.+.+..+.++++++.|+....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 68999987544 44444 345677888888898877655444 889999987664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-10 Score=107.92 Aligned_cols=208 Identities=11% Similarity=0.039 Sum_probs=138.5
Q ss_pred ceEEcCCCCEEEEee-C-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-
Q 005254 24 PLVVSSDGSFIACAC-G-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG- 100 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~-~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~- 100 (706)
..+|+|+|+.|++.. . +.|..|+. +++. ..+..+...+..++++++|+++++...++.|.+|+.. ++.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~ 125 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRY 125 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEecc
Confidence 689999999555444 3 48999997 5553 3444466778999999999977665556789999986 553322211
Q ss_pred ---cCCCeEEEEECCCCCEEEE----ecC-------------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 101 ---HDGPAIGMACHPSGGLLAT----AGA-------------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 101 ---~~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
....+..++++|+|++.++ |.. .+.|..||..+++..... .......++|+|+++.
T Consensus 126 ~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~-- 201 (305)
T 3dr2_A 126 AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQT-- 201 (305)
T ss_dssp TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSE--
T ss_pred CCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCE--
Confidence 1234678999999998886 332 256788887777644433 3456788999999876
Q ss_pred EEEEecC------CeEEEEECCCCeeEEE---e-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcc
Q 005254 161 LFSGSDD------ATVRVWDLLAKKCVAT---L-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230 (706)
Q Consensus 161 l~~~~~d------g~i~vwd~~~~~~~~~---~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 230 (706)
|+.+... +.|.+|++..+. +.. + ....+....+++.++|+ |.+++.+ .|.+|+. +++....+....
T Consensus 202 lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~ 277 (305)
T 3dr2_A 202 LYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG 277 (305)
T ss_dssp EEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS
T ss_pred EEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC
Confidence 4444443 789999987654 211 1 11233456788999998 5555544 4999998 466666665555
Q ss_pred eeeeEEeeCCCC
Q 005254 231 MVEAVCAIPPGS 242 (706)
Q Consensus 231 ~~~~~~~~~~~~ 242 (706)
.+..+++.+++.
T Consensus 278 ~~~~~~f~~d~~ 289 (305)
T 3dr2_A 278 TASNCTFDQAQQ 289 (305)
T ss_dssp CCCEEEECTTSC
T ss_pred ceeEEEEeCCCC
Confidence 566666665543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-10 Score=106.94 Aligned_cols=116 Identities=13% Similarity=0.036 Sum_probs=76.6
Q ss_pred CCeEEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEe-------eCCCCcEEEEEEcCCCCceEEEEEec-----CC
Q 005254 103 GPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYF-------KGHKGVVSSILFHPDTDKSLLFSGSD-----DA 168 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg 168 (706)
..+..++++|+|+.+++.. .++.+.||.+.+++.. .+ ..+...+..+++.+++. ++++... ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~--L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI--VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE--EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc--EEEEcCCCCcCCCC
Confidence 6789999999999988853 2343556665566543 22 13456899999999854 2333322 57
Q ss_pred eEEEEECCCCeeEEEeecc------cceEEEEEEecCCCEEEEEe----CCCEEEEEeCCCCc
Q 005254 169 TVRVWDLLAKKCVATLDKH------FSRVTSMAITSDGSTLISAG----RDKVVNLWDLRDYS 221 (706)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~----~dg~i~~w~~~~~~ 221 (706)
.|.+||+.+++.+..+... ...+..+++++++..++.+. .++.|.+||+.+++
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 8999999999877666432 23457888887655554443 45677777766543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-10 Score=108.09 Aligned_cols=196 Identities=9% Similarity=0.111 Sum_probs=131.7
Q ss_pred ceEEcCCCCEEEEee---CCeEEEEEccCCeEEE------eecCCCccEEEEEEccCCCEEEEEec-----cCeEEEEEC
Q 005254 24 PLVVSSDGSFIACAC---GESINIVDLSNASIKS------TIEGGSDTITALALSPDDKLLFSSGH-----SREIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~---~~~i~i~d~~~~~~~~------~l~~~~~~i~~l~~s~~~~~l~s~~~-----d~~i~iwd~ 89 (706)
.++++|||+++++.. ++.+.||.+.+++... ...+|-..+..++++++|+++++-.. ++.|.+||+
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence 599999999988753 2324555544665431 11234568999999999986665433 478999999
Q ss_pred CCCeEEEEeecc------CCCeEEEEECCCCCEEE-Eec---CCCcEEEEECCCCeEEEEeeCCC---------------
Q 005254 90 STLKCLRSWKGH------DGPAIGMACHPSGGLLA-TAG---ADRKVLVWDVDGGFCTHYFKGHK--------------- 144 (706)
Q Consensus 90 ~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~-~~~---~d~~i~vw~~~~~~~~~~~~~~~--------------- 144 (706)
.+++.+..+..+ ...+..+++++++..+. +-. .++.|.+||+.+++....+.+|.
T Consensus 101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~ 180 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180 (343)
T ss_dssp TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence 999987776532 23568999998755554 433 57889999999887666554321
Q ss_pred --------------CcEEEEEEcCCCCceEEEEEecCC-eEEEEECC---CCe-----eEE--EeecccceEEEEEEecC
Q 005254 145 --------------GVVSSILFHPDTDKSLLFSGSDDA-TVRVWDLL---AKK-----CVA--TLDKHFSRVTSMAITSD 199 (706)
Q Consensus 145 --------------~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~---~~~-----~~~--~~~~~~~~v~~~~~~~~ 199 (706)
..+..++|+|+++. |+.+...+ .+..++.. .+. ... ...++.+....++++++
T Consensus 181 ~~~~~~~g~~~~~~~~~~gia~s~dg~~--ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~ 258 (343)
T 2qe8_A 181 VQIGQPDGTVIRPHLGVNGIVLDAENEW--LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD 258 (343)
T ss_dssp CBEECTTSCEECCCCCEEEEEECTTSCE--EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred EEeccCCCceeceecccceeEeccCCCE--EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence 23688999998875 66655554 45444431 110 000 11134445667999999
Q ss_pred CCEEEEEeCCCEEEEEeCCCCc
Q 005254 200 GSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
|.++++...++.|.+||..+++
T Consensus 259 G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 259 HNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp CCEEEEEGGGTEEEEEETTTTE
T ss_pred CCEEEEccCCCeEEEEECCCCC
Confidence 9988888888999999985554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-08 Score=91.48 Aligned_cols=249 Identities=10% Similarity=0.075 Sum_probs=156.9
Q ss_pred EEEEecCCcEEEEeCCCceee-----EeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 369 LAVATNIEQVQVYDLSSMSCS-----YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
|..+.. +.|+.+++...... ..+......+.++. +.++++.++++-..++.|..++................
T Consensus 4 l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 4 LLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred EEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 344433 46777777654321 11222223445665 77877886777777889999998876544444333457
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC---CCcEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ---DRTACV 520 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i 520 (706)
...+++++++..+.++....+.|.+++++... ..............++++|++..|..+.. .+.|..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 88999999776577777778899999886431 11111112245789999997666655553 367888
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-C
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-A 598 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~ 598 (706)
+++..................+++++++..|+. -...+.|.++|+........+. .......++. ++..|..+. .
T Consensus 151 ~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~--d~~~lyva~~~ 227 (267)
T 1npe_A 151 SHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTS--YGKNLYYTDWK 227 (267)
T ss_dssp EETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEE--ETTEEEEEETT
T ss_pred EecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEE--eCCEEEEEECC
Confidence 887543322222223346789999998766654 4456789999987544333333 2233455654 355665555 5
Q ss_pred CCCEEEEECCCCeEEEEeccCC-CcEEEEEEcCCCC
Q 005254 599 DGLVKLWTVRTGECIATYDKHE-DKIWALAVGKKTE 633 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~ 633 (706)
.+.|.++|..+++.+..+.... .....+++.|++.
T Consensus 228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 5899999999999988886433 2456777877764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-13 Score=126.41 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=113.9
Q ss_pred CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCC-eE-
Q 005254 30 DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP-AI- 106 (706)
Q Consensus 30 dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~- 106 (706)
++..+++++. +.|+.||..+|+.+..++. ..+.+..+..++..+++++.|+.|+.||.++|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 5667777765 4899999999999877775 45556666778888888889999999999999887766543211 10
Q ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 107 ~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
+..+. ++..+++++.++.|+.||..+|+.+..+..+. ...++|+++. +++++.++.|+.||..+++.+..+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~--v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL--LYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE--EEEEecCCEEEEEECCCCCEEEeEec
Confidence 00111 35577888889999999999999888776543 2345665554 88889999999999999987766543
Q ss_pred ccceEEEEEEecCC---CEEEEEeCCCEEEEEeCCCCcceeeecCccee
Q 005254 187 HFSRVTSMAITSDG---STLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232 (706)
Q Consensus 187 ~~~~v~~~~~~~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~ 232 (706)
+. .....+..+. ..+++++.+|.++.||.++++.+.......++
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv 205 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV 205 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence 21 2223334432 56888889999999999999887776654443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-09 Score=96.89 Aligned_cols=220 Identities=10% Similarity=0.072 Sum_probs=150.4
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEe-------CCCcCeEEEEEecCCCeEEEEecCC------CeEEEEE
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESR----CCVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSD------HTIKVWS 470 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~~ 470 (706)
.+++.+++.+..+++|.++|+.+. +....+. ........+...|+| +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 678888888999999999998755 5665552 112245667888998 55565554 7899999
Q ss_pred ecCCCCCCCcccccceeEEEeec--C-cceEEEEEcCCCCEEEEee-------------------CCCcEEEEeCCCccE
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAH--G-KDINSLAVAPNDSLVCTGS-------------------QDRTACVWRLPDLVS 528 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~ 528 (706)
..+.+ ........ . .--..+.|+|+++.+++.. .+.+|.+||+.+++.
T Consensus 171 ~~T~~----------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 171 HYSFE----------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp TTTCC----------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CCCCe----------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 87653 22222211 1 1123477899999888884 368899999999888
Q ss_pred EEEEeec-C-CcEEEEEE--ccCCCEEEEec------CCCcEEEEEcCCCce--EEEE--eec----------------c
Q 005254 529 VVTFRGH-K-RGIWSVEF--SPVDQVVITAS------GDKTIKIWSISDGSC--LKTF--EGH----------------T 578 (706)
Q Consensus 529 ~~~~~~~-~-~~v~~~~~--s~~~~~l~~~~------~dg~i~iwd~~~~~~--~~~~--~~~----------------~ 578 (706)
+.++... . .....+.| +|+++++++++ .+++|.+|....++. .+.+ ... .
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~ 320 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVP 320 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEEC
T ss_pred eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCC
Confidence 8877652 1 23455656 99999988776 456888877655432 1111 110 1
Q ss_pred cCEEEEEEEeCCCEEEEEeC-CCCEEEEECC---CCeEEEEeccCC--------------CcEEEEEEcCCCCEEEEEe
Q 005254 579 SSVLRASFLTRGAQIVSCGA-DGLVKLWTVR---TGECIATYDKHE--------------DKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 579 ~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~ 639 (706)
.....+.+|+||++|.++.. .+.|.+||+. +.+.+..+.... +.-..+.++|||++|+++.
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 34678899999999977765 5799999986 345666654321 1247899999999999887
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-09 Score=98.37 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=140.5
Q ss_pred EEc--CCCCEEEEeeCC--eEEEEEccCC----eEEEeec-------CCCccEEEEEEccCCCEEEEEecc------CeE
Q 005254 26 VVS--SDGSFIACACGE--SINIVDLSNA----SIKSTIE-------GGSDTITALALSPDDKLLFSSGHS------REI 84 (706)
Q Consensus 26 ~~s--~dg~~l~~~~~~--~i~i~d~~~~----~~~~~l~-------~~~~~i~~l~~s~~~~~l~s~~~d------~~i 84 (706)
+++ +++++|++++.. .|+|+|+.+. +....++ .....-..+..+|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 899999998875 7999998765 6666663 112244678889999 66666444 789
Q ss_pred EEEECCCCeEEEEeeccCC---CeEEEEECCCCCEEEEec-------------------CCCcEEEEECCCCeEEEEeeC
Q 005254 85 RVWDLSTLKCLRSWKGHDG---PAIGMACHPSGGLLATAG-------------------ADRKVLVWDVDGGFCTHYFKG 142 (706)
Q Consensus 85 ~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~-------------------~d~~i~vw~~~~~~~~~~~~~ 142 (706)
.+.|.++++.+.++..... --..+.|+|+++.+++.. .+.+|.+||+.+++.+..+..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 9999999999999873322 233588899999988874 368899999999988888774
Q ss_pred C-C-CcEEEEEE--cCCCCceEEEEEe-----cCCeEEEEECCCCeeE--EE--eecc----------------cceEEE
Q 005254 143 H-K-GVVSSILF--HPDTDKSLLFSGS-----DDATVRVWDLLAKKCV--AT--LDKH----------------FSRVTS 193 (706)
Q Consensus 143 ~-~-~~v~~~~~--~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~--~~--~~~~----------------~~~v~~ 193 (706)
. . .....+.| +|+++. .+++.. .+++|.+|..+.++.. +. +... ......
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~-aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLM-GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCE-EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred CCCCCccceeEeeECCCCCE-EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 3 1 34556666 998776 233333 5678888776554321 11 1110 134678
Q ss_pred EEEecCCCEEEEEeC-CCEEEEEeCCCC---cceeeecC
Q 005254 194 MAITSDGSTLISAGR-DKVVNLWDLRDY---SCKLTVPT 228 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~-dg~i~~w~~~~~---~~~~~~~~ 228 (706)
+.+++||++|+++.. .+.|.+||+.+. +.+..++.
T Consensus 326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 999999999998875 689999998632 34444444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-12 Score=122.73 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=115.4
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+++. +++++.||.|+.||..+++.+..+.. +.+.+..+..++. ++++++.|+.|+.||..+++...
T Consensus 8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w---------- 73 (369)
T 2hz6_A 8 PETL-LFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLT---------- 73 (369)
T ss_dssp CTTE-EEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSE----------
T ss_pred eCCE-EEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceee----------
Confidence 3555 88899999999999999999988776 4555555555654 67777899999999987654211
Q ss_pred EEeec-CcceE-EEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC
Q 005254 489 VVAAH-GKDIN-SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 489 ~~~~~-~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
....+ ...+. +..+. ++..+++++.++.++.||..+++.+..+..+. ...++|++..+++++.|+.|+.||..
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS
T ss_pred eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC
Confidence 11000 00000 00111 34567788889999999999999888776553 24566788899999999999999999
Q ss_pred CCceEEEEeecccCEEEEEEEeCC---CEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEE-EEEEcCCCC
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRG---AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW-ALAVGKKTE 633 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~ 633 (706)
+++.+..+..+. .....+..+. ..+++++.||.|+.||..+|+.+...+.. .++. ...+++++.
T Consensus 149 tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 149 TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGL 216 (369)
T ss_dssp SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSC
T ss_pred CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCce
Confidence 998876654321 1222333332 56778889999999999999998877643 3443 344555554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-08 Score=88.18 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=119.2
Q ss_pred CCEEEEeeCCeEEEEEccCCeEE-----EeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccCCC
Q 005254 31 GSFIACACGESINIVDLSNASIK-----STIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHDGP 104 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~-----~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 104 (706)
|.+|.++..+.|+.+++...... ..+......+..+++++++..|..+. .++.|..++..+......+......
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 46777777778999998765421 12222234678999999877666554 4789999999766544333333357
Q ss_pred eEEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec---CCeEEEEECCCCee
Q 005254 105 AIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD---DATVRVWDLLAKKC 180 (706)
Q Consensus 105 v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~ 180 (706)
...++++|++..|..+ ...+.|.+++.+.................+++.|++.. ++.+.. .+.|..+++....
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~--lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN--LYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE--EEEEECCSSSCEEEEEETTSCC-
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCE--EEEEECCCCCcEEEEEecCCCC-
Confidence 7899999987666655 45678999998754332222222356789999997655 333332 4688888875432
Q ss_pred EEEe-ecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 181 VATL-DKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 181 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
...+ .........+++++++..|+.+.. .+.|.+++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~ 197 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC
Confidence 2222 223345788899988776666553 4567666654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.8e-09 Score=106.44 Aligned_cols=257 Identities=11% Similarity=0.078 Sum_probs=159.0
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEEE
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGV 436 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~ 436 (706)
..+++++.++.+..+|..+++.......... .+.+-. .. .+.. ++++.. +|.|..+|..+++.+..
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v-~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RV-VKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EE-ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC--EE-ECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 3455566667777777777777665544210 111000 11 1334 444433 58999999999999887
Q ss_pred EeCCCc-------------------------------CeEEEEEecCCCeEEEEecCCC-------------------eE
Q 005254 437 GTGHMG-------------------------------AVGAVAFSKKLQNFLVSGSSDH-------------------TI 466 (706)
Q Consensus 437 ~~~~~~-------------------------------~v~~~~~~~~~~~~l~~~~~d~-------------------~i 466 (706)
+..... ....+++.++.. +++.+..++ .|
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 653110 112367777765 666666655 37
Q ss_pred EEEEecCCCCCCCcccccceeEEEee--cC-------cceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEEEEee
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAA--HG-------KDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVVTFRG 534 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 534 (706)
..+|..+++ ....... |. .+.....+..+|+ .++.++.+|.++++|..+++.+...+.
T Consensus 273 ~AlD~~tG~----------~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 273 LAIRPDTGK----------LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEECTTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred EEEcCCCCc----------eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 777777654 2222221 11 2222233334665 788999999999999999998854432
Q ss_pred cCC------------cE------------------------EEEEEccCCCEEEEe------------------------
Q 005254 535 HKR------------GI------------------------WSVEFSPVDQVVITA------------------------ 554 (706)
Q Consensus 535 ~~~------------~v------------------------~~~~~s~~~~~l~~~------------------------ 554 (706)
... ++ ..++++|+...++..
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 110 00 125777776665541
Q ss_pred ------------cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc
Q 005254 555 ------------SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (706)
Q Consensus 555 ------------~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (706)
..+|.|..||+.+++.+-+...+ .+.....+...+.++++++.||.++.||..+|+.+..++...+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~ 501 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGI 501 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCc
Confidence 13488999999999998777643 33444556667889999999999999999999999888754321
Q ss_pred E-EEEEEcCCCC-EEEEEe
Q 005254 623 I-WALAVGKKTE-MFATGG 639 (706)
Q Consensus 623 v-~~~~~s~~~~-~l~~~~ 639 (706)
. .-+.+..+|+ +++++.
T Consensus 502 ~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 502 VAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred ccCceEEEECCEEEEEEEe
Confidence 1 2233345666 444443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-09 Score=93.54 Aligned_cols=188 Identities=10% Similarity=0.039 Sum_probs=135.5
Q ss_pred ceEEcCCCCEEEEee---CCeEEEEEccCCeEEEeecCCCc-cEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACAC---GESINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~---~~~i~i~d~~~~~~~~~l~~~~~-~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~ 98 (706)
.++|+|||.+.++.+ ++.|.++|+.+++.+..+.-... ....++++ ++.|..+ -.++.+.++|.++++.+.++
T Consensus 25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 499999975444433 25899999999999887653221 22345554 5556554 45889999999999999998
Q ss_pred ecc-CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEecCCeEEE
Q 005254 99 KGH-DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGSDDATVRV 172 (706)
Q Consensus 99 ~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~v 172 (706)
... .. ...+++|+++|+++..++.|.++|.++.+.+..+.-.. ..+..+.|. ++ . +.+....++.|.+
T Consensus 103 ~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~-lyvn~~~~~~V~v 176 (266)
T 2iwa_A 103 THQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E-VWANIWQTDCIAR 176 (266)
T ss_dssp ECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E-EEEEETTSSEEEE
T ss_pred ECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E-EEEecCCCCeEEE
Confidence 743 22 24466788877777778899999999998887766321 236788888 54 3 3455556889999
Q ss_pred EECCCCeeEEEeeccc-------------ceEEEEEEecCCCEEEEEe-CCCEEEEEeCCC
Q 005254 173 WDLLAKKCVATLDKHF-------------SRVTSMAITSDGSTLISAG-RDKVVNLWDLRD 219 (706)
Q Consensus 173 wd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~ 219 (706)
.|..+++.+..+.-.. .....++|+|+++.+++++ ..+.+.+.++..
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999999988885321 2568999999987666555 678888888754
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=106.27 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=159.1
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEE-e-cCCCeEEEEe------------------cCCCeE
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF-S-KKLQNFLVSG------------------SSDHTI 466 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~~l~~~------------------~~d~~i 466 (706)
++++++++....+.+|.+.|+.+.+....+.-. ......+++ + |+++ +++++ -.++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceE
Confidence 467787777777888999999999988855433 356788887 5 8888 45554 234678
Q ss_pred EEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC------------------------------
Q 005254 467 KVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR------------------------------ 516 (706)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------------------------------ 516 (706)
.+.|..+.+ ......-.. ....++++|+|+++++.+.+.
T Consensus 178 tvID~~t~~----------v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 178 TAVDADKWE----------VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEETTTTE----------EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEECCCCe----------EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 888876432 222222222 456788999999999888553
Q ss_pred --------cEEEEeCCC--ccE-EEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCc------------eEE
Q 005254 517 --------TACVWRLPD--LVS-VVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGS------------CLK 572 (706)
Q Consensus 517 --------~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~------------~~~ 572 (706)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ...
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 366667666 434 444442 23456799999999876655 57899999998653 233
Q ss_pred EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC----------CeEEEEeccCCCcE-----EEEEEcCCCCEEEE
Q 005254 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT----------GECIATYDKHEDKI-----WALAVGKKTEMFAT 637 (706)
Q Consensus 573 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~ 637 (706)
+.. -......++|+++|...++.--|+.|.+||+.+ .+.+..+..|..+- ..+.++|||++|++
T Consensus 326 ~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 333 334678899999994445566789999999987 56788887765532 12356899999998
Q ss_pred EeC---CCcE----------EEEECCchh
Q 005254 638 GGS---DALV----------NLWHDSTAA 653 (706)
Q Consensus 638 ~~~---dg~i----------~vw~~~~~~ 653 (706)
+.. |+.+ .++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 654 4421 778886554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-08 Score=104.30 Aligned_cols=370 Identities=11% Similarity=0.094 Sum_probs=201.5
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc----------E-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT----------I-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~----------i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
++.+++....+.|+-+|..+|+.+-..+..... + ..+++ ++..++.++.|+.|..+|.++|+.+.++
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 454444444558999999999988666533211 0 11223 3567888888999999999999999887
Q ss_pred eccCC-CeEEEEECC--CCCEEEEecC------CCcEEEEECCCCeEEEEeeCCC---C---------------------
Q 005254 99 KGHDG-PAIGMACHP--SGGLLATAGA------DRKVLVWDVDGGFCTHYFKGHK---G--------------------- 145 (706)
Q Consensus 99 ~~~~~-~v~~~~~s~--~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~---~--------------------- 145 (706)
..... ....+..+| .+..++++.. ++.|..+|..+|+.+..+.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 65211 000111112 1345555543 5899999999999988775311 0
Q ss_pred -------cEEEEEEcCCCCceEEEEEecCC-------------------eEEEEECCCCeeEEEeec--cc-------ce
Q 005254 146 -------VVSSILFHPDTDKSLLFSGSDDA-------------------TVRVWDLLAKKCVATLDK--HF-------SR 190 (706)
Q Consensus 146 -------~v~~~~~~~~~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~ 190 (706)
....+++.|+.+. ++.+..++ .|..+|..+|+.+..++. |. .+
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~--vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDL--LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHCEECCCCSCEEEETTTTE--EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeCCCCccccceEEcCCCCE--EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0123677776554 66666555 499999999999887754 21 23
Q ss_pred EEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC-CCCCcccccccccchhhhccccccceE
Q 005254 191 VTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP-PGSAFDSFLSSYNQQTIKKKRRSLEIH 266 (706)
Q Consensus 191 v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (706)
.....+..+|+ .++.++.+|.++++|..+++.+...+.........+.+ .+...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~---------------------- 359 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV---------------------- 359 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE----------------------
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcc----------------------
Confidence 33333444665 68889999999999999999886654432110100100 00000
Q ss_pred EEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEe
Q 005254 267 FITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILS 346 (706)
Q Consensus 267 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (706)
...... + .. .....+............++.|+...+++...+-.... ...... ..
T Consensus 360 --~~~~~~----~--~~---------~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~-~~~~~~---~~---- 414 (668)
T 1kv9_A 360 --EAPGVR----Y--EK---------EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEGKD---FV---- 414 (668)
T ss_dssp --ECTTTT----C--SS---------SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCGGG---CC----
T ss_pred --cccccc----c--cC---------CeeEECCCCccccCCCcceECCCCCEEEEeccccceEe-eeeccc---cc----
Confidence 000000 0 00 00000000011112234566676666665544332222 111000 00
Q ss_pred eEecccCceeeEeeEeCCCCcEEE-EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLA-VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
..........+ .....+ ....+|.+..||+.+++............ ... ....+.. ++.++.|+.++.
T Consensus 415 ----~~~~~~~g~~~---~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~~~--~~t~gg~-vf~g~~dg~l~a 483 (668)
T 1kv9_A 415 ----TRKAFNTAAGF---ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN-GGT--LSTAGNL-VFQGTAAGQMHA 483 (668)
T ss_dssp ----CCSSCCCSSCG---GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC-CCE--EEETTTE-EEEECTTSEEEE
T ss_pred ----cccccccCccc---cccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc-Cce--eEeCCCE-EEEECCcccchh
Confidence 00000000000 000011 12234789999999999877665433221 111 3345565 777899999999
Q ss_pred EeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec
Q 005254 426 WDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~ 461 (706)
||..+++.+..+....... ..+.+..+|+.+++.+.
T Consensus 484 ~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 484 YSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999998877553222 23455566665555544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.4e-08 Score=96.85 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=90.5
Q ss_pred CCC---CEEEEeeCCCcEEEEeCCCccEEEEEeecC-------------CcE--------------------------EE
Q 005254 504 PND---SLVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI--------------------------WS 541 (706)
Q Consensus 504 ~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v--------------------------~~ 541 (706)
.+| ..++.++.+|.++++|..+++.+....... .++ ..
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 397 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGH 397 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCC
Confidence 467 567788899999999999999887665211 111 13
Q ss_pred EEEccCCCEEEEe---------------------------------c------CCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 542 VEFSPVDQVVITA---------------------------------S------GDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 542 ~~~s~~~~~l~~~---------------------------------~------~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
++++|+..++++. + .+|.|..||+.+++.+-+... ..+..
T Consensus 398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~ 476 (599)
T 1w6s_A 398 DSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVW 476 (599)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCC
T ss_pred ccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCcc
Confidence 5667766655442 1 357899999999998877652 22222
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCC-EEEEE
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTE-MFATG 638 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~-~l~~~ 638 (706)
.-.+...+..++.++.||.++.||.++|+.+..++..... ..-+.+..+|+ |+++.
T Consensus 477 ~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 477 GGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 2233446778888999999999999999999888743322 12345556776 45443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-08 Score=86.85 Aligned_cols=206 Identities=12% Similarity=0.044 Sum_probs=143.9
Q ss_pred CeEEEeecCCC-ccEEEEEEccCCCEEEEEec--cCeEEEEECCCCeEEEEeeccCC-CeEEEEECCCCCEEEEe-cCCC
Q 005254 50 ASIKSTIEGGS-DTITALALSPDDKLLFSSGH--SREIRVWDLSTLKCLRSWKGHDG-PAIGMACHPSGGLLATA-GADR 124 (706)
Q Consensus 50 ~~~~~~l~~~~-~~i~~l~~s~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~-~~d~ 124 (706)
.+.+.++.... .....++|++|+.+.++.+. ++.|.+.|.++++.+..+.-... ....+++. ++.|..+ -.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 34556664222 24689999999755555443 67999999999999998763222 22345555 4455554 4678
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeeccc-----ceEEEEEEecC
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-----SRVTSMAITSD 199 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~ 199 (706)
.+.++|..+.+.+..+...... ...+++|++. ++.+..++.|.++|..+.+.+..+.-.. ..+..+.|. +
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKI--LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSS--EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCE--EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 9999999999999888633122 2345667776 4455568899999999998888775322 236788888 6
Q ss_pred CCEEEEEeCCCEEEEEeCCCCcceeeecCc--------------ceeeeEEeeCCCCCcccccccccchhhhccccccce
Q 005254 200 GSTLISAGRDKVVNLWDLRDYSCKLTVPTY--------------EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEI 265 (706)
Q Consensus 200 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
|...+....++.|.+.|.++++.+..+... .....+++.+++. .
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~----------------------~ 219 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK----------------------R 219 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT----------------------E
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC----------------------E
Confidence 754444446789999999999998888764 2346778887764 3
Q ss_pred EEEEecCCCeEEEEECCCC
Q 005254 266 HFITVGERGIVRMWNADSA 284 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~ 284 (706)
.++++...+.+...++...
T Consensus 220 lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCCeEEEEEEecc
Confidence 6788888899988886543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-07 Score=96.62 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=152.6
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcc----eEEEeeeeeecCCCEEEEEeeC------CCcEEEEeCCCceEEEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSE----IVLCLDTCALSSGKILIVTGSK------DNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~ 437 (706)
.+++++.++.+..+|..+++.......... .+.+- ....+.. +++++. ++.|..+|..+++.+..+
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~---P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA---PFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC---CEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC---CEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 455555667777777777776655442210 11110 0012344 444444 789999999999988776
Q ss_pred eCCCcC--------------------------------------eEEEEEecCCCeEEEEecCC----------------
Q 005254 438 TGHMGA--------------------------------------VGAVAFSKKLQNFLVSGSSD---------------- 463 (706)
Q Consensus 438 ~~~~~~--------------------------------------v~~~~~~~~~~~~l~~~~~d---------------- 463 (706)
...... ...+++.++.. .++.+..+
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeE
Confidence 532211 01345666544 44444321
Q ss_pred CeEEEEEecCCCCCCCcccccceeEEEee--c--------CcceEEEEEcCCCC---EEEEeeCCCcEEEEeCCCccEEE
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAA--H--------GKDINSLAVAPNDS---LVCTGSQDRTACVWRLPDLVSVV 530 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~i~~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~~ 530 (706)
+.|..+|..+++ ....... | ..++ -+....+|+ .++.++.+|.++++|..+++.+.
T Consensus 272 ~~v~Ald~~tG~----------~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 272 MTIWGRDLDTGM----------AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp TEEEEEETTTCC----------EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCc----------EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 257777776653 2222211 1 1111 122334674 67788899999999999999887
Q ss_pred EEeecC-------------CcE--------------------------EEEEEccCCCEEEEec----------------
Q 005254 531 TFRGHK-------------RGI--------------------------WSVEFSPVDQVVITAS---------------- 555 (706)
Q Consensus 531 ~~~~~~-------------~~v--------------------------~~~~~s~~~~~l~~~~---------------- 555 (706)
..+... .++ ..++++|+..++++..
T Consensus 341 ~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 420 (571)
T 2ad6_A 341 AEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRA 420 (571)
T ss_dssp EEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred eecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccccccccccc
Confidence 765321 111 2357888777776643
Q ss_pred ---------------------CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 556 ---------------------GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 556 ---------------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
.+|.|..||+.+++.+.++... ..+....+...+..++.++.||.|+.||..+|+.+.
T Consensus 421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 3578999999999988777632 333333445567788889999999999999999998
Q ss_pred EeccCCCc-EEEEEEcCCCCEEE
Q 005254 615 TYDKHEDK-IWALAVGKKTEMFA 636 (706)
Q Consensus 615 ~~~~~~~~-v~~~~~s~~~~~l~ 636 (706)
.++..... -..+.+..+|+.++
T Consensus 500 ~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 500 NFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEECSSCCCSCCEEEEETTEEEE
T ss_pred EEeCCCCcEeeeEEEEECCEEEE
Confidence 88743221 12233556776444
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-07 Score=92.44 Aligned_cols=371 Identities=12% Similarity=0.051 Sum_probs=198.6
Q ss_pred CCCEEEEee-CCeEEEEEc-cCCeEEEeecCCCcc-----------EEEEEEccCCCE----EEEEeccCeEEEEECCCC
Q 005254 30 DGSFIACAC-GESINIVDL-SNASIKSTIEGGSDT-----------ITALALSPDDKL----LFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 30 dg~~l~~~~-~~~i~i~d~-~~~~~~~~l~~~~~~-----------i~~l~~s~~~~~----l~s~~~d~~i~iwd~~~~ 92 (706)
++.+++... .+.|+-+|. .+|+.+-..+..... -..++++|.+.. |+.++.|+.|.-+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 444444443 468999999 899988555432210 123566554444 788888999999999999
Q ss_pred eEEEEeeccCC----CeEE-EEECCCCCEEEEec------CCCcEEEEECCCCeEEEEeeCCCCc---------------
Q 005254 93 KCLRSWKGHDG----PAIG-MACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHKGV--------------- 146 (706)
Q Consensus 93 ~~~~~~~~~~~----~v~~-~~~s~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~--------------- 146 (706)
+.+........ .+.+ -.+. ++ .+++++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 99887653220 1111 1111 34 555554 3799999999999998776633211
Q ss_pred ----------------------E-EEEEEcCCCCceEEEEEecC----------------CeEEEEECCCCeeEEEeecc
Q 005254 147 ----------------------V-SSILFHPDTDKSLLFSGSDD----------------ATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 147 ----------------------v-~~~~~~~~~~~~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~ 187 (706)
+ ..+++.++... ++.+..+ +.|..+|..+|+.+..++..
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~--vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL--IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE--EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCE--EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0 12345555444 5555443 47999999999998776542
Q ss_pred c----------ceEEEEEEe-cCC---CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEE-ee-CCCCCcccccccc
Q 005254 188 F----------SRVTSMAIT-SDG---STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC-AI-PPGSAFDSFLSSY 251 (706)
Q Consensus 188 ~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 251 (706)
. .++. +... .+| ..++.++.+|.++++|.++++.+...+....+.-.. .. +.+....... .
T Consensus 298 ~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~--~ 374 (599)
T 1w6s_A 298 PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE--Y 374 (599)
T ss_dssp TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG--G
T ss_pred CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc--c
Confidence 2 1121 2222 467 467778899999999999999887665432110000 00 0010000000 0
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
.... .......+.-..........++.|+.+.+++...+......
T Consensus 375 ------~~~~-----------------------------~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 375 ------GTRM-----------------------------DHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (599)
T ss_dssp ------CCCT-----------------------------TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred ------CCCC-----------------------------CCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence 0000 00000000111122334456777877777666554332221
Q ss_pred EeeeccccceeeEEeeEecccCceeeEe---eEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDL---KFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (706)
...... ......... .+..+.+. -......|.+..||+.+++............... ...
T Consensus 420 -~~~~~~------------~~g~~~~g~~~~~~~~p~~~-~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~---~~t 482 (599)
T 1w6s_A 420 -PFMLPY------------KAGQFFVGATLNMYPGPKGD-RQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT---MAT 482 (599)
T ss_dssp -ECCCCC------------CTTSCCCCEEEEEEECTTSB-TTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEE
T ss_pred -cccccc------------cCCcceecccceeccCCcCC-cccCCCcCeEEEEECCCCCEEeEecCCCCccCcc---eEe
Confidence 111000 000000000 00000000 0000034789999999998876664221111010 223
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEe
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSG 460 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~ 460 (706)
.+.. ++.++.|+.++.||.++++.+..++.....+ .-+.+..+|+.++++.
T Consensus 483 agg~-vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 483 AGDL-VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp TTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred cCCE-EEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 4555 6668999999999999999998876543322 2356667777565544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-07 Score=92.93 Aligned_cols=134 Identities=10% Similarity=0.120 Sum_probs=92.0
Q ss_pred CCCC---EEEEeeCCCcEEEEeCCCccEEEEEeecC-------------CcE----------------------------
Q 005254 504 PNDS---LVCTGSQDRTACVWRLPDLVSVVTFRGHK-------------RGI---------------------------- 539 (706)
Q Consensus 504 ~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v---------------------------- 539 (706)
.+|+ .++.++.+|.++++|..+++.+..+.... .++
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 4674 78889999999999999999887665432 000
Q ss_pred ----EEEEEccCCCEEEEec---------------------------------CCCcEEEEEcCCCceEEEEeecccCEE
Q 005254 540 ----WSVEFSPVDQVVITAS---------------------------------GDKTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 540 ----~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
..++++|+...+++.. .+|.|..||+.+++.+-+.... .++.
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~ 489 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLW 489 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCC
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCc
Confidence 1345666655554432 3678999999999988776633 2332
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EEEEE
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MFATG 638 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~~ 638 (706)
.-.....+.+++.++.||.++.||.++|+.+..++...+.. .-+.+..+|+ |+++.
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 22333457789899999999999999999999887543322 2356667887 44443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8.7e-09 Score=100.66 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=141.1
Q ss_pred ceEEcC-----CCCEEEEeeCC--eEEEEEccCCeEEEeecCC-CccEEEEEE-c-cCCCEEEEEe--------------
Q 005254 24 PLVVSS-----DGSFIACACGE--SINIVDLSNASIKSTIEGG-SDTITALAL-S-PDDKLLFSSG-------------- 79 (706)
Q Consensus 24 ~~~~s~-----dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~-~~~i~~l~~-s-~~~~~l~s~~-------------- 79 (706)
..++|. ||+++.+.... .|.+.|+.+.+....++-. ...+..+++ + |+++++.+++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 466776 99999988765 6999999999988755432 345789998 5 9999998884
Q ss_pred ----ccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC-------------------------------
Q 005254 80 ----HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR------------------------------- 124 (706)
Q Consensus 80 ----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~------------------------------- 124 (706)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 25689999999999999887433 456788999999999987443
Q ss_pred -------cEEEEECCC--CeE-EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe------------eEE
Q 005254 125 -------KVLVWDVDG--GFC-THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CVA 182 (706)
Q Consensus 125 -------~i~vw~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~ 182 (706)
.|.|.|..+ ++. +..+. -.....++.++|||+. +++++..+.+|.++|+.+.+ ...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCE-EEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 366666665 433 33333 2234578999999875 55666678999999998653 233
Q ss_pred EeecccceEEEEEEecCCCEEE-EEeCCCEEEEEeCCC
Q 005254 183 TLDKHFSRVTSMAITSDGSTLI-SAGRDKVVNLWDLRD 219 (706)
Q Consensus 183 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~w~~~~ 219 (706)
.+. -......++|+++| +++ +.-.++.|.+||++.
T Consensus 326 ~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred EcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 332 23457889999999 555 455699999999977
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-05 Score=83.72 Aligned_cols=510 Identities=11% Similarity=0.068 Sum_probs=250.6
Q ss_pred eCCeEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe-eccCCCeEEEEECCC--
Q 005254 38 CGESINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACHPS-- 113 (706)
Q Consensus 38 ~~~~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~-- 113 (706)
..+.|++.+......+...... ...|.+.+.+. .+++.+. .+.+.++.+.++++.... ..-...|.|+++.|.
T Consensus 490 t~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~ 566 (1158)
T 3ei3_A 490 TSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGD 566 (1158)
T ss_dssp ESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSS
T ss_pred ecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCC
Confidence 3445778877655556556533 34677766553 4566664 678888888766432211 123578999999873
Q ss_pred ----CCEEEEecC-CCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECC--CCeeEEE--
Q 005254 114 ----GGLLATAGA-DRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL--AKKCVAT-- 183 (706)
Q Consensus 114 ----~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~-- 183 (706)
++++|+|.. |++++|+++.+.+.+....- ....+.++++..-+...+|..|-.||.+.-+.+. ++.....
T Consensus 567 ~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~ 646 (1158)
T 3ei3_A 567 SNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKK 646 (1158)
T ss_dssp STTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEE
T ss_pred CcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccccee
Confidence 469999986 99999999998776654331 1234455555433455679999999988666543 4443321
Q ss_pred eecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhcccccc
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
..--..++.-..+...|..-+.+..+.-..++.-+ ++.....-....+..++.......
T Consensus 647 ~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~-------------------- 705 (1158)
T 3ei3_A 647 VTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGY-------------------- 705 (1158)
T ss_dssp EECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSS--------------------
T ss_pred EEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccC--------------------
Confidence 11112345444454444433333344444444433 222111111112222222221110
Q ss_pred ceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee-
Q 005254 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME- 342 (706)
Q Consensus 264 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 342 (706)
..-++... ++.+++..++.-.. -.+..+...-....++.--..+...+-...........
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~------------------~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~ 766 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQK------------------LHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSS------------------EEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSS
T ss_pred CCcEEEEc-CCceEEEEecccCC------------------eeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccc
Confidence 01233222 33466655432200 01111111111122232222333222222111000000
Q ss_pred eEEeeE--------ecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC-CcceEEEeeeeeecC-CCE
Q 005254 343 LILSKR--------LVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG-HSEIVLCLDTCALSS-GKI 412 (706)
Q Consensus 343 ~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~ 412 (706)
...... ..........-....++. .+-.....+.++++|..+.+.+..+.- ....+.++..+...+ .+.
T Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~ 845 (1158)
T 3ei3_A 767 TTALRPSASTQALSSSVSSSKLFSSSTAPHET-SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNT 845 (1158)
T ss_dssp EEESSCCHHHHCSEEEECCCCCC-----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCC
T ss_pred cchhhhhhhhhhhhhcccccccccccccCchh-hcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCE
Confidence 000000 000000000000000000 000000125688888888776655543 334455665444333 344
Q ss_pred EEEEee----------CCCcEEEEeCCCceEEEEE-eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc
Q 005254 413 LIVTGS----------KDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 413 ~l~~~~----------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 481 (706)
++++|+ ..|.|.+|++..++..... ....+.+++++--.. + ++++. ..++++|++...+.
T Consensus 846 ~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~-Lla~i--g~~l~vy~l~~~~~----- 916 (1158)
T 3ei3_A 846 YFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-K-LLASI--NSTVRLYEWTTEKE----- 916 (1158)
T ss_dssp EEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-E-EEEEE--TTEEEEEEECTTSC-----
T ss_pred EEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-E-EEEEc--CCEEEEEECCCCce-----
Confidence 577775 3578999998755433221 234678888875543 2 44333 47899999975421
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC--CccEEEEEee-cCCcEEEEEEccCCCEEEEecCCC
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP--DLVSVVTFRG-HKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
...... +-..+..+.....++++++|+.-..+.++..+ ..+....-+. +...++++.|-.++ .++.+..+|
T Consensus 917 ----L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~g 990 (1158)
T 3ei3_A 917 ----LRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAF 990 (1158)
T ss_dssp ----EEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTS
T ss_pred ----EEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCC
Confidence 111111 11123333343457899999988877776543 3333333222 55678888887554 677789999
Q ss_pred cEEEEEcCCC--------ceEEEEeecc-cCEEEEE---EEeC---------CCEEEEEeCCCCEEEEE
Q 005254 559 TIKIWSISDG--------SCLKTFEGHT-SSVLRAS---FLTR---------GAQIVSCGADGLVKLWT 606 (706)
Q Consensus 559 ~i~iwd~~~~--------~~~~~~~~~~-~~i~~~~---~s~~---------~~~l~~~~~dg~i~iwd 606 (706)
.+.+...... ++...-.-|- ..|+++. +.+. ...++.++.+|.|-+.-
T Consensus 991 Nl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 991 NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp EEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred cEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence 9999876541 2222222233 3555554 2222 12466677777776653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-08 Score=84.16 Aligned_cols=180 Identities=13% Similarity=0.144 Sum_probs=125.1
Q ss_pred eEEEEEecCCCeEEEEecCCC--eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDH--TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACV 520 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i 520 (706)
...+.|+ ++ .+..+.+.+| .|+.+|+.+++ ...... -........+.++++.|... -.++.+.+
T Consensus 45 tqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgk----------v~~~~~-l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 45 TEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGK----------TLQQIE-LGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCC----------EEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cceEEEE-CC-EEEEECCCCCCceEEEEECCCCc----------EEEEEe-cCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 4678888 54 4677777765 89999998764 222221 12233332233334455444 45889999
Q ss_pred EeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEE
Q 005254 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVS 595 (706)
Q Consensus 521 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~ 595 (706)
||..+.+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+.
T Consensus 112 ~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 99999999999885332 23444678888887778889999999999888876422 335567776 7765555
Q ss_pred EeCCCCEEEEECCCCeEEEEeccC------------CCcEEEEEEcCCCCEEEEEeC
Q 005254 596 CGADGLVKLWTVRTGECIATYDKH------------EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 596 ~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.-.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|.+.+.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 556889999999999999888632 135689999999887776664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-07 Score=90.95 Aligned_cols=375 Identities=12% Similarity=0.058 Sum_probs=198.7
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCcc---------EEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSDT---------ITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~---------i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
++.+++....+.|+-+|..+|+.+-.+...... -..+++ .+..++.++.++.|.-+|.++|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 554444444357999999999988655433211 012222 356677888899999999999999887654
Q ss_pred cCC----CeE-E-EEECC--CCC-EEEEec------CCCcEEEEECCCCeEEEEeeCCCCcE------------------
Q 005254 101 HDG----PAI-G-MACHP--SGG-LLATAG------ADRKVLVWDVDGGFCTHYFKGHKGVV------------------ 147 (706)
Q Consensus 101 ~~~----~v~-~-~~~s~--~~~-~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~~~v------------------ 147 (706)
... .+. . +.... +++ .+++++ .++.|..+|..+|+.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 1 11111 233 566654 37899999999999887654321111
Q ss_pred -----------------------EEEEEcCCCCceEEEEEec--------------------C----CeEEEEECCCCee
Q 005254 148 -----------------------SSILFHPDTDKSLLFSGSD--------------------D----ATVRVWDLLAKKC 180 (706)
Q Consensus 148 -----------------------~~~~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~ 180 (706)
..+++.|+... ++.+.. | +.|..+|..+|+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~--vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT--IIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTE--EEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCE--EEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 12445555444 444432 2 6899999999999
Q ss_pred EEEeec--cc--------ceEEEEEEe-cCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeE-Eee-CCCCCc
Q 005254 181 VATLDK--HF--------SRVTSMAIT-SDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAV-CAI-PPGSAF 244 (706)
Q Consensus 181 ~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~ 244 (706)
+..++. |. .++. +... .+|+ .++.++.+|.++++|.++++.+...+....+.-. ... ..+...
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 887753 21 1221 1222 4674 7888899999999999999988776654321100 000 001000
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEee
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 324 (706)
.. ..+....... .+ . ....................++.|+...+++...
T Consensus 383 ~~--~~~~~~~~~~-------------~~--------~--------~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 383 ER--EGQRPPLPEP-------------GQ--------K--------HGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp EC--TTCSCCCCCT-------------TC--------S--------SCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred Ec--cccCCccccc-------------cc--------c--------CCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 00 0000000000 00 0 0000000000111122335566777766666654
Q ss_pred CCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeee
Q 005254 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDT 404 (706)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 404 (706)
+-.+.++....... .+..-.-..+...|. .....|.+..||+.+++........... ..-.
T Consensus 432 ~~~~~~~~~~~~~~-----------~g~~~~g~~~~~~p~------~~~~~G~l~A~D~~tG~~~W~~~~~~~~-~~g~- 492 (582)
T 1flg_A 432 HWKEDYWTEEVSYT-----------KGSAYLGMGFRIKRM------YDDHVGSLRAMDPVSGKVVWEHKEHLPL-WAGV- 492 (582)
T ss_dssp CEEEEEEECCCCCC-----------TTSCCCCEEEEEEES------CSSCSEEEEEECTTTCCEEEEEEESSCC-CSCC-
T ss_pred hcceeeeccccccc-----------CCCceeccceeecCC------CCCCcceEEEEECCCCCEEEEecCCCCC-cccc-
Confidence 43333222111000 000000000000110 0123588999999999887666543211 1111
Q ss_pred eeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec
Q 005254 405 CALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~ 461 (706)
....+.. ++.++.|+.++.||.++++.+..++...+.. .-+.+..+|+.++++.+
T Consensus 493 -~~taggl-vf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 493 -LATAGNL-VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp -EEETTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred -eEeCCCE-EEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 2233555 6779999999999999999999887654332 23666677775665543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-08 Score=86.50 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=126.0
Q ss_pred ceEEcCCCCEEEEeeC-C--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEEEEee
Q 005254 24 PLVVSSDGSFIACACG-E--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~ 99 (706)
.+.|+ |+.++.+.+. + .|+++|+++++.+..+.-.. ......+.++++.|..+ -.++.+.++|.++++.+.++.
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 38888 6654444433 2 79999999999988776543 33333333445566555 458899999999999999998
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC--C---CcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
....+ ..+++|++.|+....++.|.++|.++.+.+..+... . ..++.+.|. ++. +.+....++.|.+.|
T Consensus 125 ~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~--lyan~w~~~~I~vID 198 (262)
T 3nol_A 125 YDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE--IFANVWQTNKIVRID 198 (262)
T ss_dssp CSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTSSEEEEEC
T ss_pred CCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE--EEEEEccCCeEEEEE
Confidence 54322 344467787777766788999999999888876542 1 334567776 443 355555788999999
Q ss_pred CCCCeeEEEeecc------------cceEEEEEEecCCCEEEEEeCC
Q 005254 175 LLAKKCVATLDKH------------FSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 175 ~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++++.+..+... ..-.+.++|+|+++.|++.+..
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999998887532 1356899999998888887753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-07 Score=80.03 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=122.4
Q ss_pred eEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEee
Q 005254 25 LVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWK 99 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~ 99 (706)
+.|++ + .|..+.+. .|+++|+.+++.+..+.-... .....+.++++.|.. .-.++.+.++|.++.+.+.++.
T Consensus 26 L~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 26 LFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp EEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred EEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 78876 4 44444443 799999999999887764332 222223333555554 4568899999999999999998
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCC-----CcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK-----GVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
....+ ..+ .+|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.+. ++. +.+....+..|.+.|
T Consensus 103 ~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~--lyanvw~s~~I~vID 176 (243)
T 3mbr_X 103 YPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE--LLANVWLTSRIARID 176 (243)
T ss_dssp CSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTTTEEEEEC
T ss_pred CCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE--EEEEECCCCeEEEEE
Confidence 54333 233 4567777776668899999999998888776422 345667765 333 344444678999999
Q ss_pred CCCCeeEEEeecc-------------cceEEEEEEecCCCEEEEEeC
Q 005254 175 LLAKKCVATLDKH-------------FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 175 ~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 208 (706)
..+++.+..+.-. ..-.+.++++|+++.|++.+.
T Consensus 177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999998887522 135689999998888877764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-07 Score=94.47 Aligned_cols=275 Identities=11% Similarity=0.053 Sum_probs=171.3
Q ss_pred CcEEEEEec-CCcEEEEeC-CCceeeEeeeCCcce-EE---E---eeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE
Q 005254 366 EQYLAVATN-IEQVQVYDL-SSMSCSYVLAGHSEI-VL---C---LDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436 (706)
Q Consensus 366 ~~~l~~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~-i~---~---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 436 (706)
+..+.+++. ++.+..+|. .+++.+......... +. | +.......+.. ++.++.|+.+..+|..+++.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEeCCCEEEEEECCCCCEEEE
Confidence 345666666 789999999 899887766533210 00 0 00001112445 77788899999999999998877
Q ss_pred EeCCCc----CeEE-EEEecCCCeEEEEecC------CCeEEEEEecCCCCCCCcccccceeEEEeec------------
Q 005254 437 GTGHMG----AVGA-VAFSKKLQNFLVSGSS------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH------------ 493 (706)
Q Consensus 437 ~~~~~~----~v~~-~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~------------ 493 (706)
...... .+.+ ..+. ++ .+++++. ++.|..+|..+++. .......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~-~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA-KD--TVLMGCSGAELGVRGAVNAFDLKTGEL----------KWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE-TT--EEEEECBCGGGTCCCEEEEEETTTCCE----------EEEEESSSCHHHHTBCTTT
T ss_pred ecCCCCCccceeccCCEEE-CC--EEEEEecCCccCCCCEEEEEECCCCcE----------EEEEccCCCccccccCccc
Confidence 653221 1211 1122 33 3555544 78999999877642 1111100
Q ss_pred --------------------------CcceEEEEEcCCCCEEEEeeCC----------------CcEEEEeCCCccEEEE
Q 005254 494 --------------------------GKDINSLAVAPNDSLVCTGSQD----------------RTACVWRLPDLVSVVT 531 (706)
Q Consensus 494 --------------------------~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~ 531 (706)
......+++.++...++.+..+ +.|..+|..+++.+..
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~ 287 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG 287 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE
Confidence 0001235666766667666532 3599999999999888
Q ss_pred Eeec--C--------CcEEEEEEccCCC---EEEEecCCCcEEEEEcCCCceEEEEeecc-------------cCE----
Q 005254 532 FRGH--K--------RGIWSVEFSPVDQ---VVITASGDKTIKIWSISDGSCLKTFEGHT-------------SSV---- 581 (706)
Q Consensus 532 ~~~~--~--------~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~i---- 581 (706)
++.. . .++ -+....+|+ .++.++.+|.++++|..+++.+....... .++
T Consensus 288 ~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 288 YQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp EESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 7642 1 222 123334674 57788899999999999999887664221 111
Q ss_pred ----------------------EEEEEEeCCCEEEEEe-------------------------------------CCCCE
Q 005254 582 ----------------------LRASFLTRGAQIVSCG-------------------------------------ADGLV 602 (706)
Q Consensus 582 ----------------------~~~~~s~~~~~l~~~~-------------------------------------~dg~i 602 (706)
..++++|+..++++.. .+|.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 1357888777776653 35789
Q ss_pred EEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHH
Q 005254 603 KLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAERE 656 (706)
Q Consensus 603 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 656 (706)
..||+.+|+.+..+.... .+....+...+..++.++.||.|+.||..+++.+.
T Consensus 447 ~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 999999999888775322 22222223346677778999999999999887653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-07 Score=79.72 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=125.4
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
....+.|+. ..+..+.+.+|.|+.+|+.+++. ..........-..+++..+ ++.+..-.++.+.+||
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv----------~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQP----------VWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWS 122 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSC----------SEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEE
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcE----------EeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEE
Confidence 346788874 45788888999999999987752 1111111111233555432 3444455688999999
Q ss_pred CCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCEEEEEe
Q 005254 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 523 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~ 597 (706)
..+.+.+.++..... -..+ ++|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|+..+...
T Consensus 123 ~~Tl~~~~ti~~~~e-GwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 123 GMPPQRERTTRYSGE-GWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp TTTTEEEEEEECSSC-CCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CCcCcEEEEEeCCCc-eeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 999999999885332 2334 4668888888789999999999999888876422 245667777 776555555
Q ss_pred CCCCEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEe
Q 005254 598 ADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 598 ~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~ 639 (706)
.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|++.+
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 6789999999999999888632 13568999999877666555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.8e-08 Score=83.05 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=121.7
Q ss_pred eEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEE-EeccCeEEEEECCCCeEEEEeecc
Q 005254 25 LVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFS-SGHSREIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~ 101 (706)
+.|+ ++.|+.+.+. .|+++|+++++.+..+ -. .........++++.|.. .-.++.+.++|.++++.+.++...
T Consensus 60 L~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 60 LVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred EEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 7776 3455555554 7999999999987766 22 22223223334444444 446889999999999999999854
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC--C---CcEEEEEEcCCCCceEEEEEecCCeEEEEECC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH--K---GVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 176 (706)
... ..+++|++.|+.+..++.|.++|.++.+.+..+.-. . ..++.+.|. +|. +.+....++.|.+.|.+
T Consensus 136 ~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~--lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 136 GEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV--IYANIWHSSDVLEIDPA 209 (268)
T ss_dssp SCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--EEEEETTCSEEEEECTT
T ss_pred Cce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE--EEEEECCCCeEEEEeCC
Confidence 332 233367888888777899999999999988877542 2 234667777 443 34555568899999999
Q ss_pred CCeeEEEeecc-------------cceEEEEEEecCCCEEEEEeC
Q 005254 177 AKKCVATLDKH-------------FSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 177 ~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 208 (706)
+++.+..+.-. ..-.+.++++|+++.|++.+.
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99998887532 135689999998877777664
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-06 Score=74.71 Aligned_cols=181 Identities=11% Similarity=0.158 Sum_probs=123.9
Q ss_pred cCeEEEEEecCCCeEEEEecCC--CeEEEEEecCCCCCCCcccccceeEEEeecCcce--EEEEEcCCCCEEEEeeCCCc
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSD--HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI--NSLAVAPNDSLVCTGSQDRT 517 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~dg~ 517 (706)
.....+.|++ + .+..+.+.+ ..|+.+|+.+++ ...... -.... ..+++. ++++....-.++.
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgk----------v~~~~~-l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGR----------ILQRAE-VPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCC----------EEEEEE-CCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCC----------EEEEEe-CCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 4466788887 3 366666665 489999998764 222221 11222 233433 2344444557889
Q ss_pred EEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecc-----cCEEEEEEEeCCCE
Q 005254 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHT-----SSVLRASFLTRGAQ 592 (706)
Q Consensus 518 i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~ 592 (706)
+.+||..+.+.+.++...... ..+ +++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.+. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 999999999999998854332 344 4567777777778899999999999888876432 345666765 6665
Q ss_pred EEEEeCCCCEEEEECCCCeEEEEeccC-------------CCcEEEEEEcCCCCEEEEEeC
Q 005254 593 IVSCGADGLVKLWTVRTGECIATYDKH-------------EDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 593 l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~ 640 (706)
.+..-.+..|.+.|..+|+.+..+... .+..+.|+++|+++.|.+.+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 555556789999999999999888621 135689999998776666553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-06 Score=77.52 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=149.5
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
.++.+. ...|+..++............. ....++ +.+.++.++.+-...+.|..++...................+
T Consensus 46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~~-~~~~l~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 46 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE-NAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp EEEEEC-BSCEEEECTTSCCEEEEECSCS-CEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred eeEeec-ccceEEEeCCCCeeEEeecCCC-ceEEEE--EeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence 444443 3568888887665544444333 356666 777788866676778899999988765444444444566789
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CC-CcEEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~ 525 (706)
++.+.+..+.++-...+.|.+.+++... ........-.....+++.|.+..|+... .. +.|..+++..
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCS----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCc----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 9998767677777778899999886532 1122222334578999999665555444 44 6788888764
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..........-.....++++|++..|+.+ ...+.|..+|+........+.........+++ ..+...++-...+.|..
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence 33322222234457899999877666555 45678999998644333333333445677777 34545555556678888
Q ss_pred EECCCCeEEEEec
Q 005254 605 WTVRTGECIATYD 617 (706)
Q Consensus 605 wd~~~~~~~~~~~ 617 (706)
++..+|+.+..+.
T Consensus 271 ~~~~~G~~~~~i~ 283 (349)
T 3v64_C 271 ANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTCCSCEEEE
T ss_pred EEccCCCccEEec
Confidence 8876776555554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.1e-06 Score=78.80 Aligned_cols=246 Identities=9% Similarity=-0.008 Sum_probs=156.2
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
+++.+.. ..|+.+++............ .....++ +.+.++.++++-...+.|..++...................+
T Consensus 89 ~l~~~~~-~~I~~i~~~~~~~~~~~~~~-~~~~gl~--~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 164 (386)
T 3v65_B 89 VLLFANR-IDIRQVLPHRSEYTLLLNNL-ENAIALD--FHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 164 (386)
T ss_dssp EEEEECB-SCEEEECTTSCCCEEEECSC-SCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE
T ss_pred eeEeecC-ccceeeccCCCcEEEEecCC-CccEEEE--EecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE
Confidence 4444433 67888888776555444433 3456666 777788867777778899999988766544444444566789
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee-CC-CcEEEEeCCC
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS-QD-RTACVWRLPD 525 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~d-g~i~i~d~~~ 525 (706)
++.+.+..+.++-...+.|.+.++.... ........-.....+++.|.+..|+... .. +.|..+++..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAH----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCc----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 9998767677777778888888876431 1122222335578999998766665554 33 6788888765
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..........-.....|+|+|++..|+.+ ...+.|..+|+........+.........+++ ..+..+++-...+.|..
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 44333333334457899999876666555 45678999998644333333333445677787 44545555556788999
Q ss_pred EECCCCeEEEEeccCCCcEEEEEE
Q 005254 605 WTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
++..+|+.+..+.........|++
T Consensus 314 ~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 314 ANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTCCSCEEEECSCSCCCCEEE
T ss_pred EECCCCcceEEEccCCCCCceEEE
Confidence 987777766665533333334443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-05 Score=72.08 Aligned_cols=226 Identities=11% Similarity=0.042 Sum_probs=143.4
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEec
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~ 451 (706)
..|+..|+.+......+.. .....+++ +.+.++.++++-...+.|..++... ......+.........+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 5788889887765554443 33455666 7777777677777788999999876 222222333334568899987
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC--CcEEEEeCCCccEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--RTACVWRLPDLVSV 529 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~ 529 (706)
.+.++.++-...+.|.++++.... ..............+++.|.+..|+..... +.|..+++.. ...
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~ 155 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDI 155 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCE
T ss_pred cCCeEEEEECCCCEEEEEeCCCCc----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCe
Confidence 666577777778899999876431 122222234567899999966655555433 6788888753 333
Q ss_pred EEE-eecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 530 VTF-RGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 530 ~~~-~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
..+ ...-.....+++++++..|+.+. ..+.|..+|+.. .....+.. .......+++. .+..+++-...+.|..
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~ 233 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS 233 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEE
Confidence 333 22345678999999877666554 567899999864 33333321 12345677774 4445555556678999
Q ss_pred EECCCCeEEEEec
Q 005254 605 WTVRTGECIATYD 617 (706)
Q Consensus 605 wd~~~~~~~~~~~ 617 (706)
++..+|+.+..+.
T Consensus 234 ~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 234 ANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTCCCCEEEE
T ss_pred EeCCCCcceEEEe
Confidence 9987777555553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-05 Score=74.89 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=125.2
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
|.+..+ ..+|+++..+.|+..++.+......+.+. ..+..++|++....|..+. ..+.|..++.........+....
T Consensus 38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 38 CKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EEESSS-CCEEEEECBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccc-CceeEeecccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 555556 45777777778999998776655545443 4578999998776666554 57889999988765444343333
Q ss_pred CCeEEEEECCCCCEEEE-ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecC-CeEEEEECCCCee
Q 005254 103 GPAIGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD-ATVRVWDLLAKKC 180 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~ 180 (706)
.....+++.+.+..|.. -...+.|.+.+.+.......+.........+++.|.+.. ++++-... +.|...++.....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~-ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe-EEEeccCCCCEEEEEeCCCCCc
Confidence 45678999986655544 445678999998765444334444567899999997554 34444444 7888888754332
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
.............+++++++..|+.+.. .+.|..++++
T Consensus 195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2222223345788999987776666643 4566666653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-06 Score=74.99 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=130.6
Q ss_pred cceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeec-CCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE---EE
Q 005254 23 GPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIE-GGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC---LR 96 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~-~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~ 96 (706)
+.++++|+++.|++..+. .|...|.. ++.++.+. +.....-.|++.+++.++++.-.++.+.++++..... +.
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeee
Confidence 369999988777765554 79999987 88777663 2234578899999998777765678899998865432 22
Q ss_pred Eee------ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---CeEEEEee-------CCCCcEEEEEEcCCCCceE
Q 005254 97 SWK------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---GFCTHYFK-------GHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 97 ~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~-------~~~~~v~~~~~~~~~~~~~ 160 (706)
... ........++|+|+++.|.++.+.....+|.++. ...+..+. .+...+..+++.|... .+
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg-~l 187 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN-TL 187 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT-EE
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC-eE
Confidence 221 1345678999999998888877665556666541 11122221 1344678999999854 56
Q ss_pred EEEEecCCeEEEEECCCCeeEEEeeccc---------ceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 161 LFSGSDDATVRVWDLLAKKCVATLDKHF---------SRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 161 l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
++....+..+..+|.. ++.+..+.-.. .....++|.++|+ |++.++.+.++.+.-
T Consensus 188 liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 188 LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 6667788889999975 55555443221 3678999999997 666688887777653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-06 Score=78.26 Aligned_cols=232 Identities=12% Similarity=0.006 Sum_probs=142.8
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-------------------CCcCeEEEEEec-CCCeEEEEecCCCe
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-------------------HMGAVGAVAFSK-KLQNFLVSGSSDHT 465 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~v~~~~~~~-~~~~~l~~~~~d~~ 465 (706)
+.+++.. +.++..++.|..|+..++........ ....+..+++.+ ++. |+.+...+.
T Consensus 26 ~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~v~d~~~~ 102 (322)
T 2fp8_A 26 FDSTNKG-FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LYIVDCYYH 102 (322)
T ss_dssp CCTTCSS-EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EEEEETTTE
T ss_pred EcCCCCE-EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc--EEEEECCCC
Confidence 5566654 66777889999999877654322111 113578899997 554 444444445
Q ss_pred EEEEEecCCCCCCCcccccceeE-EEe-ecCcceEEEEEcC-CCCEEEEeeC-----------------CCcEEEEeCCC
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKA-VVA-AHGKDINSLAVAP-NDSLVCTGSQ-----------------DRTACVWRLPD 525 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~-~~~~l~~~~~-----------------dg~i~i~d~~~ 525 (706)
+..++...+.. .... ... ........+++.+ +|++.++-.. ++.|..||..+
T Consensus 103 i~~~d~~~g~~--------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 103 LSVVGSEGGHA--------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEEECTTCEEC--------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEEEeCCCCEE--------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 77776543210 0000 000 1123467899999 9987766432 36788888876
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCc--eEEEEeecccCEEEEEEEeCCCEEEEEeC----
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS--CLKTFEGHTSSVLRASFLTRGAQIVSCGA---- 598 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---- 598 (706)
++...... .......++++|+++.|+.+ ...+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 65433222 22345679999999866555 556889999987421 1222221223 778899999987766544
Q ss_pred ------CCCEEEEECCCCeEEEEeccCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 599 ------DGLVKLWTVRTGECIATYDKHE----DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 599 ------dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.+.|..+|. .++.+..+.... ..++++.+ .++++.++....+.|..+++...
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 467888887 588777776432 34666766 46666666667888999987643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-06 Score=77.56 Aligned_cols=201 Identities=11% Similarity=0.015 Sum_probs=125.0
Q ss_pred eeccceEEcCCCCEEEEeeC-CeEEEEEccCCeEEEeecC-------------------CCccEEEEEEcc-CCCEEEEE
Q 005254 20 YGGGPLVVSSDGSFIACACG-ESINIVDLSNASIKSTIEG-------------------GSDTITALALSP-DDKLLFSS 78 (706)
Q Consensus 20 ~~~~~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~-------------------~~~~i~~l~~s~-~~~~l~s~ 78 (706)
.....++++++|+++.++.. +.|..||..+++....... ....+..+++++ +++ |+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 34457999999996666554 4899999877654322110 013578999998 565 5555
Q ss_pred eccCeEEEEECCCCeEEEEeec-----cCCCeEEEEECC-CCCEEEEecC-----------------CCcEEEEECCCCe
Q 005254 79 GHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHP-SGGLLATAGA-----------------DRKVLVWDVDGGF 135 (706)
Q Consensus 79 ~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~vw~~~~~~ 135 (706)
...+.|..+|..+++. ..+.. .......+++.+ +|.+.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4455688899876643 22211 123578899999 9986665432 3678899988776
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe--eEEEeecccceEEEEEEecCCCEEEEEeC-----
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLISAGR----- 208 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 208 (706)
...... .......++|+|+++. ++++-...+.|.++++.... ....+....+ ...+++.++|++.++...
T Consensus 177 ~~~~~~-~~~~p~gia~~~dg~~-lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 177 TTLLLK-ELHVPGGAEVSADSSF-VLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEE-EESCCCEEEECTTSSE-EEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEecc-CCccCcceEECCCCCE-EEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 443322 1233467999998765 23444566889999987421 1112211223 778999999986665544
Q ss_pred -----CCEEEEEeCCCCcceeee
Q 005254 209 -----DKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 209 -----dg~i~~w~~~~~~~~~~~ 226 (706)
.+.|..++.. ++.+..+
T Consensus 254 ~~~~~~~~v~~~d~~-G~~~~~~ 275 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-GNILEVI 275 (322)
T ss_dssp TTSCEEEEEEEECTT-SCEEEEE
T ss_pred ccCCCccEEEEECCC-CCEEEEE
Confidence 4667777764 4444333
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-05 Score=71.61 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=156.0
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcC
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGA 443 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~ 443 (706)
+++.+. ...|+..++.......... ....+..++ +.+.++.+..+-...+.|+.+++... ............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 444443 3788888888765544443 344566777 88878886666667788999988752 233334445567
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEE
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVW 521 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~ 521 (706)
...+++.+.++++.++-...+.|.+.+++... ..............+++.|.+.+|+.... .+.|...
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTCS----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCCc----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 78899998666677777778899988876542 22223333455789999997666665542 3678888
Q ss_pred eCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEee--cccCEEEEEEEeCCCEEEEEeC
Q 005254 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEG--HTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 522 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
++............-.....|++++++..|+.+. ..+.|..+|+........... .......+++. .+..+.+-..
T Consensus 231 ~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~ 309 (400)
T 3p5b_L 231 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII 309 (400)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESS
T ss_pred eCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCC
Confidence 8865444333343445678999998877776664 467899999864433333322 22345566663 3344555556
Q ss_pred CCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 599 DGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 599 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
.+.|..+|..+|+.+..+.........+.+
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 688999998888766666543334444443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.76 E-value=7.3e-05 Score=72.07 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=122.8
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCC----eEEEEeeccCCCe
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTL----KCLRSWKGHDGPA 105 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~----~~~~~~~~~~~~v 105 (706)
..+|+++....|+..++.+......+. ....+.+|+|++.+..|..+. ..+.|..+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 357888888899999998776555444 456779999999777666654 4678999998652 2333333344567
Q ss_pred EEEEECCCCCEEEE-ecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE-ecCCeEEEEECCCCeeEEE
Q 005254 106 IGMACHPSGGLLAT-AGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 106 ~~~~~s~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~ 183 (706)
..+++.+.+..|.. -...+.|.+.+++.......+.........+++.|.+.. ++++- +..+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCCCccEEE
Confidence 89999985555544 456788999998876655555545566899999997655 22332 2347788888764443333
Q ss_pred eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
+...-.....|++++++..|+.+.. .+.|..++++
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 3333456788999987777776653 4566666653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=9e-05 Score=68.95 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=123.5
Q ss_pred CEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCC----CeEEEEeeccCCCeE
Q 005254 32 SFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLST----LKCLRSWKGHDGPAI 106 (706)
Q Consensus 32 ~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~----~~~~~~~~~~~~~v~ 106 (706)
.+|+++..+.|+..|+.+.+....+.. -....+++|++++..|..+. ..+.|..+++.+ ......+...-....
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred CEEEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 367888888999999988776655543 45678999999776666554 468999999876 222222332224567
Q ss_pred EEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec-CCeEEEEECCCCeeEEEe
Q 005254 107 GMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD-DATVRVWDLLAKKCVATL 184 (706)
Q Consensus 107 ~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 184 (706)
.+++++.+..|..+ ...+.|.+.+.+.......+.........+++.|.+.. ++++... .+.|...++. ++....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~-ly~~d~~~~~~I~~~~~d-G~~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLN-GVDIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETT-SCCEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCE-EEEEccCCCCeEEEEcCC-CCCeEEE
Confidence 89999766555444 56788999998765444444434567899999987665 2333323 3788888875 3333333
Q ss_pred -ecccceEEEEEEecCCCEEEEEe-CCCEEEEEeCCC
Q 005254 185 -DKHFSRVTSMAITSDGSTLISAG-RDKVVNLWDLRD 219 (706)
Q Consensus 185 -~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~ 219 (706)
...-.....+++++++..|+.+. ..+.|..++++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 23345678999999877777665 456899999874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-05 Score=74.06 Aligned_cols=222 Identities=12% Similarity=0.008 Sum_probs=143.9
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
...+..++|.+.++.++.+-...+.|..+++........+.........++ +.+.++.+.++-...+.|.+.++....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla--vd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA--VDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE--EETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE--EEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 345778888887777777777788999999887654444433333334455 666677766676777889998887654
Q ss_pred EEEEEeCCCcCeEEEEEecCCCeEEEEecCC-CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
..............+++.|.+..+.++-... +.|..++++... ........-.....++++|++..|..
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----------~~~~~~~~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----------RRIIADTHLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----------CEEEECSSCSCEEEEEEEGGGTEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----------cEEEEECCCCCeeeEEEeCCCCEEEE
Confidence 4444444556788999999777555555555 778887766431 11122222345689999986666655
Q ss_pred e-eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEE
Q 005254 512 G-SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFL 587 (706)
Q Consensus 512 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 587 (706)
+ ...+.|..+|+........+.........+++ ..+..+++-...+.|..++..+++.+..+.........+++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 5 45677999998654443334434455678888 345566666677889999877787776665433344444443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-06 Score=91.67 Aligned_cols=191 Identities=13% Similarity=0.117 Sum_probs=115.2
Q ss_pred eccceEEc-CCCCEEEEeeCC------eEEEEEccCC-eEEE-eecCCCccEEEEEEccCCCEEEEEecc-----CeEEE
Q 005254 21 GGGPLVVS-SDGSFIACACGE------SINIVDLSNA-SIKS-TIEGGSDTITALALSPDDKLLFSSGHS-----REIRV 86 (706)
Q Consensus 21 ~~~~~~~s-~dg~~l~~~~~~------~i~i~d~~~~-~~~~-~l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~i 86 (706)
..+..+|| |||++||++... .|+++|+.++ +.+. .+. .....++|+|||+.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 44578999 999999988652 4999999998 6321 121 123468999999988876554 36888
Q ss_pred EECCCCeE--EEEee-ccCCCeEEEEECCCCCEEEEec---CCCcEEEEECCCC--eE--EEEeeCCCCcEEEEEEcCCC
Q 005254 87 WDLSTLKC--LRSWK-GHDGPAIGMACHPSGGLLATAG---ADRKVLVWDVDGG--FC--THYFKGHKGVVSSILFHPDT 156 (706)
Q Consensus 87 wd~~~~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~---~d~~i~vw~~~~~--~~--~~~~~~~~~~v~~~~~~~~~ 156 (706)
+++.++.. ...+. ........+.|||||++|+..+ ....|.++|+.++ +. .............+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 99887642 22232 2234567889999999988765 3456889999875 22 222233445555555543 4
Q ss_pred CceEEEEEecC----CeEEEEECCCCeeEEE-eecccc--eEEEEEEecCCCEEEEEeCCCE--EEEEeC
Q 005254 157 DKSLLFSGSDD----ATVRVWDLLAKKCVAT-LDKHFS--RVTSMAITSDGSTLISAGRDKV--VNLWDL 217 (706)
Q Consensus 157 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~--i~~w~~ 217 (706)
+. +++....+ ..|..+++.++..... +-.+.. .+..+.+. .+.++++...++. |.++++
T Consensus 331 ~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 54 23333332 3677778765322122 222322 44555554 2334555666775 455554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-05 Score=69.56 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=130.4
Q ss_pred EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEEeeCC
Q 005254 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQD 515 (706)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d 515 (706)
+.+-...+..++++|++..+.++...++.|...|.. ++ ..... .........+++.+++.++++.-.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~----------v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD----------LIRTIPLDFVKDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC----------EEEEEECSSCSSEEEEEECSTTEEEEEETTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC----------EEEEEecCCCCChHHeEEeCCCEEEEEECCC
Confidence 445556799999999877667777788888888876 21 22222 1223567889999999877776677
Q ss_pred CcEEEEeCCCccE---EEEEe------ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcC---CCceEEEEee-------
Q 005254 516 RTACVWRLPDLVS---VVTFR------GHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS---DGSCLKTFEG------- 576 (706)
Q Consensus 516 g~i~i~d~~~~~~---~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------- 576 (706)
+.+.++++..... ..... ..+.....++|+|.++.|+++.+.....+|.+. ....+..+..
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred CcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 8899998765442 22221 134456899999999888887776656666654 1112222211
Q ss_pred cccCEEEEEEEeCCC-EEEEEeCCCCEEEEECCCCeEEEEeccCC---------CcEEEEEEcCCCCEEEEEeCCCcEEE
Q 005254 577 HTSSVLRASFLTRGA-QIVSCGADGLVKLWTVRTGECIATYDKHE---------DKIWALAVGKKTEMFATGGSDALVNL 646 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~i~v 646 (706)
+...+..+++.|... +++.......+.++|.. |+.+..+.-.. ..--.|+|.++|++.+ .++.+.+.+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~ 248 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYR 248 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEE
Confidence 223567899998654 55666667788999965 66666654221 2457899999998555 477765555
Q ss_pred EE
Q 005254 647 WH 648 (706)
Q Consensus 647 w~ 648 (706)
++
T Consensus 249 f~ 250 (255)
T 3qqz_A 249 FT 250 (255)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-05 Score=71.56 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=143.1
Q ss_pred CCcEEEEeCCCce-eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-EEEEeCCCcCeEEEEEecC
Q 005254 375 IEQVQVYDLSSMS-CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-VGVGTGHMGAVGAVAFSKK 452 (706)
Q Consensus 375 ~~~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 452 (706)
...|+.+++.... ..............++ +.+.++.+..+-...+.|..++...+.. .............+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 3678888887653 1112212223445566 7777777667767778899999876532 1222223345678999986
Q ss_pred CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEEE
Q 005254 453 LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSVV 530 (706)
Q Consensus 453 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~ 530 (706)
+..+.++-...+.|.+++++... ..............+++.|.+..|+... ..+.|...++.......
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSL----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CCeEEEEECCCCEEEEEECCCCc----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 66677777778899999886532 1122223345578999998766666555 25778888875433322
Q ss_pred EEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCC
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
.....-.....++++|++..|+.+ ...+.|..+|+..........+.......+++. .+..+.+-...+.|..++..+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 223333456899999977666655 456789999986433322233233456677775 334445555667899999888
Q ss_pred CeEEEEec
Q 005254 610 GECIATYD 617 (706)
Q Consensus 610 ~~~~~~~~ 617 (706)
|+....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 87655554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.62 E-value=7e-05 Score=69.56 Aligned_cols=223 Identities=9% Similarity=0.034 Sum_probs=132.5
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC-CC-eEEEEEecCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS-DH-TIKVWSFDGLSD 476 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~-~i~i~~~~~~~~ 476 (706)
...+. +.+++. ++++-..++.|..||..... ..... .......+++.++++ ++++... ++ .|..++...+.
T Consensus 34 pegia--~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~- 106 (306)
T 2p4o_A 34 LENLA--SAPDGT-IFVTNHEVGEIVSITPDGNQ-QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT- 106 (306)
T ss_dssp EEEEE--ECTTSC-EEEEETTTTEEEEECTTCCE-EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-
T ss_pred cceEE--ECCCCC-EEEEeCCCCeEEEECCCCce-EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-
Confidence 34454 667665 36666678899999987643 33332 235688999999987 4444433 22 45555544432
Q ss_pred CCCcccccceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE-EEEEe---------ecCCcEEEEEEc
Q 005254 477 DAEQPMNLKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS-VVTFR---------GHKRGIWSVEFS 545 (706)
Q Consensus 477 ~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~s 545 (706)
...... ........++..+++..+++...++.|+.+|..+++. +.... ..-.....+ +
T Consensus 107 ---------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 107 ---------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp ---------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred ---------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 111111 1122234555556655555544688899999765432 21111 111234455 7
Q ss_pred cCCCEEEEe-cCCCcEEEEEcCC-Cce--EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE--EeccC
Q 005254 546 PVDQVVITA-SGDKTIKIWSISD-GSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA--TYDKH 619 (706)
Q Consensus 546 ~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~ 619 (706)
|+++.|+.+ ...+.|..+++.. ++. ...+. .......+++.++|+++++....+.|.++|.. |+... .+...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 888766554 5577899999864 322 12221 11345568999999887777778899999975 66533 34443
Q ss_pred CCcEEEEEEc---CCCCEEEEEeCC
Q 005254 620 EDKIWALAVG---KKTEMFATGGSD 641 (706)
Q Consensus 620 ~~~v~~~~~s---~~~~~l~~~~~d 641 (706)
....++++|. ||++.|..++..
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cCCceEEEEecccCCCCEEEEECCC
Confidence 4568999998 887777665543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-06 Score=88.29 Aligned_cols=114 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred EEEEcc-CCCEEEEEeccC-----------eEEEEECCCCeE--EEEeec-cCCCeEEEEECCCCCEEEEec-CCCcEEE
Q 005254 65 ALALSP-DDKLLFSSGHSR-----------EIRVWDLSTLKC--LRSWKG-HDGPAIGMACHPSGGLLATAG-ADRKVLV 128 (706)
Q Consensus 65 ~l~~s~-~~~~l~s~~~d~-----------~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~d~~i~v 128 (706)
+.++.+ ++++++.|+.++ .+.+||..+++- +..+.. +.....++++.++++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887532 688999988753 223322 333344678889999999998 4568999
Q ss_pred EECCCCeEEEEeeCCCCc-EEEEEEcCCCCceEEEEEe-cC-----CeEEEEECCCCee
Q 005254 129 WDVDGGFCTHYFKGHKGV-VSSILFHPDTDKSLLFSGS-DD-----ATVRVWDLLAKKC 180 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~~ 180 (706)
||..+++-...-.-+..+ -.+++..++++ +++.|+ .+ ..+.+||..+.+-
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc
Confidence 999887644332212222 13455566655 366666 34 4688899877653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.59 E-value=0.0002 Score=66.43 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=84.7
Q ss_pred CCEEEEEeeCCCcEEEEeCCCceE-EEEEe---------CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCC
Q 005254 410 GKILIVTGSKDNSVRLWDSESRCC-VGVGT---------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 410 ~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 479 (706)
+..++++-..++.|..+|..+++. +.... ........+ +++++.+.++-...+.|..+++..... .
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~-~- 202 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDK-P- 202 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSC-B-
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCC-C-
Confidence 344344444578888888776431 11111 111234445 788876777777889999999874210 0
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE--EEeecCCcEEEEEEc---cCCCEEEEe
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRGHKRGIWSVEFS---PVDQVVITA 554 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~s---~~~~~l~~~ 554 (706)
.....+. .......++++++|+++++....+.|.++|.. ++... .+.......++++|. |+++.|+++
T Consensus 203 -----~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 203 -----GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -----CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -----CccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 0111111 11346779999999887777778899999975 55432 223233568999998 888777766
Q ss_pred cCCC
Q 005254 555 SGDK 558 (706)
Q Consensus 555 ~~dg 558 (706)
+..+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 5543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-06 Score=88.49 Aligned_cols=273 Identities=11% Similarity=0.034 Sum_probs=146.8
Q ss_pred EeeEeCCCCcEEEEEecCC-----------cEEEEeCCCceeeE--eeeC-CcceEEEeeeeeecCCCEEEEEee-CCCc
Q 005254 358 DLKFLGEEEQYLAVATNIE-----------QVQVYDLSSMSCSY--VLAG-HSEIVLCLDTCALSSGKILIVTGS-KDNS 422 (706)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~-----------~i~~~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~l~~~~-~dg~ 422 (706)
..++.+.++++++.++.+. .+.+||..+.+... .+.. +.....+.. +..++.. ++.|+ .+..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~l-yv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQI-VVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCE-EEECSSSTTC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCE-EEeCCCCCCc
Confidence 4445554666777665432 57889988765432 2211 111111121 4456666 66666 5568
Q ss_pred EEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec-CC-----CeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 423 VRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS-SD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 423 i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~-~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
+.+||..+.+.......+..+. .+++..++++ +++.|+ .+ ..+.+||.....-........... ....
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~--~~~~-- 341 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM--LTAD-- 341 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG--CCCC--
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc--cccc--
Confidence 9999998876554332222222 3455566777 677777 34 568889876532000000000000 0000
Q ss_pred ceEEEEEcCCCCEEEEeeCCC---------cEEEEeCCCccEEEEEeecCC---------cEEEEEEcc-CCCEEEEecC
Q 005254 496 DINSLAVAPNDSLVCTGSQDR---------TACVWRLPDLVSVVTFRGHKR---------GIWSVEFSP-VDQVVITASG 556 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~s~-~~~~l~~~~~ 556 (706)
....+..++..++.|+.+| .+..||..+..-......+.. .-.++.|.. ++++++.|+.
T Consensus 342 --~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 --KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp --TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred --ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 0012234555556665443 467888877654433322211 234455543 6788888875
Q ss_pred CC-----------cEEEEEcCCCceEEEE--eecccCE-EEEEEEeCCCEEEEEeCC-----------CCEEEEECCCCe
Q 005254 557 DK-----------TIKIWSISDGSCLKTF--EGHTSSV-LRASFLTRGAQIVSCGAD-----------GLVKLWTVRTGE 611 (706)
Q Consensus 557 dg-----------~i~iwd~~~~~~~~~~--~~~~~~i-~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~ 611 (706)
++ .+.+||..+..-.... ..+.... .++...|+|+.++.|+.+ ..+.+||..+.+
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 42 6788888766544332 1122222 234566799999999864 468999998776
Q ss_pred EEEE--eccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 612 CIAT--YDKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 612 ~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
-... .........+..+.+|++.++.||.
T Consensus 500 W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4321 2222222334556789999998885
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.55 E-value=0.0017 Score=69.14 Aligned_cols=515 Identities=11% Similarity=0.017 Sum_probs=258.0
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD 102 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 102 (706)
+|.-..+|. |-++..+.+..||-.+-+..... ......|.++....+| .|..++.+| +..||..+.+.........
T Consensus 26 ~I~qD~~G~-lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~ 102 (758)
T 3ott_A 26 CFLQDSEGL-IWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFP 102 (758)
T ss_dssp EEEECTTSC-EEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCC
T ss_pred EEEECCCCC-EEEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCC
Confidence 566677774 44566677888874332211110 1123579998888777 455566554 7899998865433111123
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee----CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCC
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK----GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 178 (706)
..|.++.. .++ .|..++.+ -|..+|..+++...... .....|.++....++. +..|+.+| |..++..++
T Consensus 103 ~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~---lWigt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 103 TDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ---IYVGTYNG-LCRYIPSNG 175 (758)
T ss_dssp SCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC---EEEEETTE-EEEEETTTT
T ss_pred ceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC---EEEEeCCC-HhhCccCCC
Confidence 45777765 344 45555555 58889988766433211 1235688888776654 55566555 778887766
Q ss_pred eeEEEe-ecc----cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC-cceeeeEEeeCCCCCccccccccc
Q 005254 179 KCVATL-DKH----FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT-YEMVEAVCAIPPGSAFDSFLSSYN 252 (706)
Q Consensus 179 ~~~~~~-~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 252 (706)
+..... ... ...|.++...+++..|..++. +-+..++..+.+....... ...+..+....++
T Consensus 176 ~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----------- 243 (758)
T 3ott_A 176 KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG----------- 243 (758)
T ss_dssp EEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC-----------
T ss_pred ceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC-----------
Confidence 543211 111 124888888777776666664 4588888766543211100 0111111111111
Q ss_pred chhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 253 QQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
.+..+... -+..++..++........
T Consensus 244 -------------~lWigT~~-Gl~~~~~~~~~~~~~~~~---------------------------------------- 269 (758)
T 3ott_A 244 -------------DLLAGTDN-GLYVYHNDTTPLQHIIHD---------------------------------------- 269 (758)
T ss_dssp -------------CEEEEETT-EEEEECCTTSCCEEECCC----------------------------------------
T ss_pred -------------CEEEEeCC-ceeEEecCCCcEEEEEcC----------------------------------------
Confidence 12222222 233333322211000000
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee-----CCcceEEEeeeeee
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-----GHSEIVLCLDTCAL 407 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~i~~~~~~~~ 407 (706)
. .....-....|.++... ....+-+++..| +.++.....-...... .....+.++. ..
T Consensus 270 --~----------~~~~~l~~~~i~~i~~D--~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~--~D 332 (758)
T 3ott_A 270 --S----------RNIQSLTNNIIWNIFAD--QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLF--RD 332 (758)
T ss_dssp --T----------TCTTSCSCSCEEEEEEC--TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEE--EC
T ss_pred --C----------CCcCcCCcCeEEEEEEc--CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEE--Ec
Confidence 0 00000012234444332 333455555555 4444322211111100 1123466654 44
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCce--EEEEEe-------CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRC--CVGVGT-------GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
.++.. -.|+.+| +..++..+++ ....+. .....|.++.-..++. |-.|+ ++-+..++......
T Consensus 333 ~~g~l--WiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt-~~GL~~~~~~~~~~-- 404 (758)
T 3ott_A 333 SKGFY--WFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ--LWIAT-DGSINRYDYATRQF-- 404 (758)
T ss_dssp TTCCE--EEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC--EEEEE-TTEEEEEETTTTEE--
T ss_pred CCCCE--EEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC--EEEEe-CCcHhhcCcCCCcE--
Confidence 55554 4445444 6666655431 111221 1234588888777776 44454 34688888654310
Q ss_pred CcccccceeEEEe----ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-----cEE---EEEee----cCCcEEEE
Q 005254 479 EQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-----VSV---VTFRG----HKRGIWSV 542 (706)
Q Consensus 479 ~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~---~~~~~----~~~~v~~~ 542 (706)
....... .....|.++...++|. |.+|+..+-+.++|..+. ... ..+.. ....|.++
T Consensus 405 ------~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 477 (758)
T 3ott_A 405 ------IHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI 477 (758)
T ss_dssp ------EEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE
T ss_pred ------EEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE
Confidence 0000000 0234578888877775 445666556888885421 111 11111 12358899
Q ss_pred EEccCCCEEEE-ecCCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEE-ec
Q 005254 543 EFSPVDQVVIT-ASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIAT-YD 617 (706)
Q Consensus 543 ~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~ 617 (706)
...++|.+.+. ++..| +..+|..+++....... ....+.++....+|...+. +.+| +..+|..+++.... ..
T Consensus 478 ~~d~~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~ 554 (758)
T 3ott_A 478 IPDNEGNVWVLLYNNKG-IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSISFG 554 (758)
T ss_dssp EECTTSCEEEEETTCSS-EEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBCCCC
T ss_pred EEcCCCCEEEEccCCCC-cEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEeccc
Confidence 99998887663 44444 88899877654432110 1245777777777766654 4555 88888766543211 11
Q ss_pred -cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 618 -KHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 618 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.....|.++... +|+ |..++..| |..++..+.
T Consensus 555 gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 555 SFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM 587 (758)
T ss_dssp C---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC
T ss_pred CCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc
Confidence 113457777763 554 44455555 666776554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00019 Score=69.89 Aligned_cols=232 Identities=8% Similarity=0.055 Sum_probs=135.2
Q ss_pred eec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCC----eEEEEEecCCCCCCCc
Q 005254 406 ALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH----TIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 406 ~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~ 480 (706)
+.| ++.. |.+....+.|+.+|...+....... .......++++++++.++++...++ .+..++.... ..
T Consensus 144 vdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-~~--- 217 (430)
T 3tc9_A 144 FDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-FK--- 217 (430)
T ss_dssp EETTEEEE-EEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-SC---
T ss_pred ECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-ee---
Confidence 555 3445 4444444789999988776554433 5567889999999884555544322 2333333221 00
Q ss_pred ccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee-cCCcEEEEEEccCCCEEE-EecCC
Q 005254 481 PMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVI-TASGD 557 (706)
Q Consensus 481 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~-~~~~d 557 (706)
....+. .......++++| +|.++++-..++.|..++...+........ .......++|+|++++|+ +-...
T Consensus 218 -----~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 218 -----VITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp -----SEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred -----eeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 011111 234467889999 677666666778999999886654222221 223467899999999554 44567
Q ss_pred CcEEEEEcCC--Cce--EEEEeec---------------ccCEE-EEEEE--------eCCCEEEEEeCCCCEEEEECCC
Q 005254 558 KTIKIWSISD--GSC--LKTFEGH---------------TSSVL-RASFL--------TRGAQIVSCGADGLVKLWTVRT 609 (706)
Q Consensus 558 g~i~iwd~~~--~~~--~~~~~~~---------------~~~i~-~~~~s--------~~~~~l~~~~~dg~i~iwd~~~ 609 (706)
+.|..++... ++. ...+.+. -.... .++.. ++|.+.++=...+.|+.++ .+
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence 8899988653 221 2222221 01223 34443 2354555555567888888 46
Q ss_pred CeEEEEecc----C-------------CCcEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 005254 610 GECIATYDK----H-------------EDKIWALAVGKK-TEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 610 ~~~~~~~~~----~-------------~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~ 650 (706)
|+.....-. . -.....|+++++ +.++++-.....|+.++++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 654433211 0 124689999995 6555555566778877754
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.51 E-value=0.0022 Score=68.31 Aligned_cols=523 Identities=10% Similarity=0.046 Sum_probs=265.4
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee----
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK---- 99 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 99 (706)
++....+| .|.++..+.+..||..+.+...........|.++.. .+| .|..++.+ .|..+|..+++......
T Consensus 67 ~i~~d~~g-~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~ 142 (758)
T 3ott_A 67 CGVIIDNT-YLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNG 142 (758)
T ss_dssp EEEEETTT-EEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHC
T ss_pred EEEEcCCC-cEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCC
Confidence 35556666 555666778999998877543311112345777765 455 45556655 68889987765433211
Q ss_pred ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC-C----CCcEEEEEEcCCCCceEEEEEecCCeEEEEE
Q 005254 100 GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG-H----KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 174 (706)
.....|.++....++.+.+. +.+ -|..++..+++....... . ...|.++...+++.. |..|+.. -+..+|
T Consensus 143 l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~--lWigt~~-Gl~~~~ 217 (758)
T 3ott_A 143 LPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC--VWIGTEG-YLFQYF 217 (758)
T ss_dssp CSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE--EEEEEEE-EEEEEE
T ss_pred cCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCE--EEEEECC-CCeEEc
Confidence 12356889988888876653 444 488889887764322111 1 224788877665554 3444443 488899
Q ss_pred CCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccch
Q 005254 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQ 254 (706)
Q Consensus 175 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (706)
..+++...........|.++....+|. |..|+.+ -+.+++..+.+......... +...+
T Consensus 218 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~---------~~~~l---------- 276 (758)
T 3ott_A 218 PSTGQIKQTEAFHNNSIKSLALDGNGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSR---------NIQSL---------- 276 (758)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEECTTCC-EEEEETT-EEEEECCTTSCCEEECCCTT---------CTTSC----------
T ss_pred CCCCeEEeccCCCCCeEEEEEEcCCCC-EEEEeCC-ceeEEecCCCcEEEEEcCCC---------CcCcC----------
Confidence 877654322222234688888887776 4555554 47788876543221110000 00000
Q ss_pred hhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 255 TIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
....+.++.... ...+-+++..| +.++...
T Consensus 277 ------------------------------------------------~~~~i~~i~~D~-~g~lWiGT~~G-l~~~~~~ 306 (758)
T 3ott_A 277 ------------------------------------------------TNNIIWNIFADQ-EHNIWLGTDYG-ISLSRYN 306 (758)
T ss_dssp ------------------------------------------------SCSCEEEEEECT-TCCEEEEESSS-EEEECCC
T ss_pred ------------------------------------------------CcCeEEEEEEcC-CCCEEEEeCCc-ccccccC
Confidence 000111111111 22244444444 2222110
Q ss_pred eccccceeeEEeeEe--cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeee-------CCcceEEEee
Q 005254 335 EVPEKKMELILSKRL--VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLA-------GHSEIVLCLD 403 (706)
Q Consensus 335 ~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~-------~~~~~i~~~~ 403 (706)
. .......... ......+.++.. +....+-+++.. .+..++..++. ....+. .....|.++.
T Consensus 307 ~----~~~~~~~~~~~~~~~~~~v~~i~~--D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~ 379 (758)
T 3ott_A 307 S----ALQFIPISQITGTGDGNQFYSLFR--DSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIY 379 (758)
T ss_dssp C-----CEEEEHHHHSCSCCCCBEEEEEE--CTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEE
T ss_pred C----ceeEEecccCCCCCCCceEEEEEE--cCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEE
Confidence 0 0000000000 001223444443 233445555554 46666655431 111111 1123466664
Q ss_pred eeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe-C-----CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCC
Q 005254 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT-G-----HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477 (706)
Q Consensus 404 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 477 (706)
...++.. -.|+ ++-+..+|..+++...... . ....|.++...+++. |..|+..+-+..++.......
T Consensus 380 --~d~~g~l--Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 380 --EDKEQQL--WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ--LWISTCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp --ECTTSCE--EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE--EEEEESSSCEEEEEHHHHHHC
T ss_pred --ECCCCCE--EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC--EEEEECCCceEEEcccccccc
Confidence 4455554 3444 4578999988876544321 1 234577777777654 666766666888875421000
Q ss_pred CCcccccceeEEEe----ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCE
Q 005254 478 AEQPMNLKAKAVVA----AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQV 550 (706)
Q Consensus 478 ~~~~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~ 550 (706)
... ......... -....|.++...++|.+.+.++..+-+..+|..+++....... ....+.++....+|.+
T Consensus 453 ~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 530 (758)
T 3ott_A 453 TSG--QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLL 530 (758)
T ss_dssp CSS--EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCE
T ss_pred CCc--ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCE
Confidence 000 000000000 0123588899999998776333344588899877654432111 1245788888888876
Q ss_pred EEEecCCCcEEEEEcCCCceEEE-Eee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 551 VITASGDKTIKIWSISDGSCLKT-FEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
.+. +..| +..+|..+++.... ..+ ....|.++... +| .|-.++.+| |..+|..+.+... +......+....+
T Consensus 531 Wig-t~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~ 604 (758)
T 3ott_A 531 WVG-FHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLF 604 (758)
T ss_dssp EEE-ETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEE
T ss_pred EEE-ecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEE
Confidence 654 4555 88888765543211 111 12457777653 55 555555656 8888988766432 2111222333344
Q ss_pred -cCCCCEEEEEeCCCcEEEEECC
Q 005254 629 -GKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 629 -s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.++|. |..|+.+|. ..++..
T Consensus 605 ~~~~G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 605 DPKEDC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp ETTTTE-EEEECBSEE-EEEEC-
T ss_pred ECCCCc-EEEecCCce-EEEChh
Confidence 34564 555777774 455554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.0001 Score=71.82 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=98.8
Q ss_pred cceEEcC-CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----C-eEEEEECCCCeEE
Q 005254 23 GPLVVSS-DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----R-EIRVWDLSTLKCL 95 (706)
Q Consensus 23 ~~~~~s~-dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~~ 95 (706)
..|+++| ++..|+++.. +.|+.+|+.+++...... .......|+|+++|++|+++... . .+.+.+ ..+...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~ 217 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFK 217 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSC
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCcee
Confidence 3789998 4556666655 689999998877654444 44567999999999977666541 1 333344 333222
Q ss_pred --EEeeccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEeeC-CCCcEEEEEEcCCCCceEEEEEecCCeEE
Q 005254 96 --RSWKGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYFKG-HKGVVSSILFHPDTDKSLLFSGSDDATVR 171 (706)
Q Consensus 96 --~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 171 (706)
..+.. ......++++| ++.++++-..++.|..++.+++........ .......++|+|+++. ++++-...+.|.
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~-lyv~d~~~~~I~ 295 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY-AYIVVVNQHYIL 295 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE-EEEEECCCCEEE
Confidence 22322 23456788999 666666655678899999987765332221 2245789999999874 355556778899
Q ss_pred EEECC
Q 005254 172 VWDLL 176 (706)
Q Consensus 172 vwd~~ 176 (706)
.++..
T Consensus 296 ~~~~d 300 (430)
T 3tc9_A 296 RSDYD 300 (430)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00057 Score=63.30 Aligned_cols=219 Identities=11% Similarity=0.011 Sum_probs=135.9
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
....+.|.+.++.++.+-...+.|..+++..... ...+.........++ +.+.++.+.++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla--vd~~~g~ly~~d~~~~~I~~~~~dG~~~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLR 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE--EETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE--EEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence 4567888876777777777778899998876532 112222222334454 6666777566666778999999876544
Q ss_pred EEEEeCCCcCeEEEEEecCCCeEEEEec-CCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe
Q 005254 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGS-SDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG 512 (706)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 512 (706)
.............+++.|.+..+..+-. ..+.|...+++... ........-.....+++++++..|..+
T Consensus 114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----------~~~~~~~~l~~Pnglavd~~~~~lY~a 183 (318)
T 3sov_A 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----------RFIIINSEIYWPNGLTLDYEEQKLYWA 183 (318)
T ss_dssp EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----------CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----------eEEEEECCCCCccEEEEeccCCEEEEE
Confidence 3334455567889999987664444442 35777777765431 111112223456899999976666555
Q ss_pred e-CCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEE
Q 005254 513 S-QDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 513 ~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 586 (706)
. ..+.|..+|+..................+++.. +..+++-...+.|..++..+++....+.........++.
T Consensus 184 D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 4 567899999864433333333345567778753 455566666788999998888776666543333333443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00044 Score=72.31 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=145.1
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCc----eEEEEEeCCCcCeEEEEE
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESR----CCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~ 449 (706)
....|+..++........... ...+..++ +.+..+.++++-...+.|+.+++... .....+.........|++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cccceeEeeccCCcceeeecC-CCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 346788888876655444433 34456676 77777776677677788998888753 223334445567788999
Q ss_pred ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCcc
Q 005254 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLV 527 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~ 527 (706)
.+.++++.++-...+.|.+.++.... ........-.....|++.|.+.+|+.... .+.|...++....
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~----------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCe----------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 98887788888888999999987542 22223334455789999997666665543 2678888886544
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCceEEEEeec--ccCEEEEEEEeCCCEEEEEe-CCCCEE
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSCLKTFEGH--TSSVLRASFLTRGAQIVSCG-ADGLVK 603 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-~dg~i~ 603 (706)
....+...-.....|++++.+..|+.+. ..+.|...++........+... -.....|++. +.+|+... ..+.|.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 4444443446788999998777666654 4567999998644433333321 2234456653 34555444 557788
Q ss_pred EEECCCCeEEEEe
Q 005254 604 LWTVRTGECIATY 616 (706)
Q Consensus 604 iwd~~~~~~~~~~ 616 (706)
..|..+|+.+..+
T Consensus 627 ~~dk~tG~~~~~l 639 (791)
T 3m0c_C 627 SANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEe
Confidence 8887777654444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00038 Score=72.78 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=119.4
Q ss_pred CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCC----eEEEEeeccCCCe
Q 005254 31 GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTL----KCLRSWKGHDGPA 105 (706)
Q Consensus 31 g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~----~~~~~~~~~~~~v 105 (706)
..+|+++....|+..++........+. ....+.+|+|++....|..+ ...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 346777777789999887766544444 34567899999966666554 44678999998753 2233333344566
Q ss_pred EEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE-ecCCeEEEEECCCCeeEEE
Q 005254 106 IGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG-SDDATVRVWDLLAKKCVAT 183 (706)
Q Consensus 106 ~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~ 183 (706)
..|++.+.++.|+.+ ...+.|.+.+++.......+.........|++.|.... ++++- +..+.|...++........
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEE
Confidence 789999887666554 45688999999866554444445566899999997555 23332 2336788888864444333
Q ss_pred eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeC
Q 005254 184 LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDL 217 (706)
Q Consensus 184 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~ 217 (706)
+...-.....|++.+.+..|+.+.. .+.|...++
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 3333456788888877666666643 345555554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00025 Score=64.70 Aligned_cols=191 Identities=12% Similarity=0.237 Sum_probs=123.1
Q ss_pred CCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccC----CCE--EEEE--ec--cCeEEEEEC--CCCeEEE
Q 005254 30 DGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPD----DKL--LFSS--GH--SREIRVWDL--STLKCLR 96 (706)
Q Consensus 30 dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~----~~~--l~s~--~~--d~~i~iwd~--~~~~~~~ 96 (706)
...+++.... +.+.+||+ +|+.++.+.. +.++.+.+-|+ |+. ||.+ .. +++|.+|++ .++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3444443333 48999999 8888888864 56777777663 322 3333 33 578999977 3443 44
Q ss_pred Eeec------cC-CCeEEEEE--CCC-CC-EEEEecCCCcEEEEECC-------CCeEEEEeeCCCCcEEEEEEcCCCCc
Q 005254 97 SWKG------HD-GPAIGMAC--HPS-GG-LLATAGADRKVLVWDVD-------GGFCTHYFKGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 97 ~~~~------~~-~~v~~~~~--s~~-~~-~l~~~~~d~~i~vw~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (706)
.+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. +.+.+..+. ..+.+..+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCe
Confidence 4421 11 45566777 774 44 67777888999999982 235566666 3467888888876665
Q ss_pred eEEEEEecCCeEEEEECC-----CCeeEEEee-cc-cceEEEEEEe--cCCC-EEEEEe-CCCEEEEEeCC-CCcceeee
Q 005254 159 SLLFSGSDDATVRVWDLL-----AKKCVATLD-KH-FSRVTSMAIT--SDGS-TLISAG-RDKVVNLWDLR-DYSCKLTV 226 (706)
Q Consensus 159 ~~l~~~~~dg~i~vwd~~-----~~~~~~~~~-~~-~~~v~~~~~~--~~~~-~l~~~~-~dg~i~~w~~~-~~~~~~~~ 226 (706)
|+.+-++.-|..++.+ +++.+..+. ++ ...+..|++. ++++ +|++++ .++.+.+||.+ +.+.+..+
T Consensus 194 --Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 --LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp --EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred --EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 8889888777777754 345554442 22 2468888884 5555 566665 56799999996 55555444
Q ss_pred c
Q 005254 227 P 227 (706)
Q Consensus 227 ~ 227 (706)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00038 Score=67.76 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=138.6
Q ss_pred eecC--CCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC---C-eEEEEEecCCCCCCC
Q 005254 406 ALSS--GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---H-TIKVWSFDGLSDDAE 479 (706)
Q Consensus 406 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~-~i~i~~~~~~~~~~~ 479 (706)
+.++ +.. |..+...+.|+.+|..++...... ........+++++++. ++++.... . .+...+.....
T Consensus 146 vd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~---- 218 (433)
T 4hw6_A 146 FDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF---- 218 (433)
T ss_dssp ECTTTTTCE-EEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT----
T ss_pred EccccCCCE-EEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe----
Confidence 6663 455 444433388999999887765543 3556688999999998 55554322 1 12222222110
Q ss_pred cccccceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcEEEEeCCCccEEEEEee--cCCcEEEEEEccCCCEEEEe-c
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTACVWRLPDLVSVVTFRG--HKRGIWSVEFSPVDQVVITA-S 555 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~-~ 555 (706)
...... ........++++| +|.+.++-..++.|+.+|..++.....+.. ....-..++|+|++++|+.+ .
T Consensus 219 -----~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 -----TERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp -----CCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred -----eccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 000111 1334567789999 676666666778899999887765333221 12223479999999955544 4
Q ss_pred CCCcEEEEEcC--CCce--EEEEeec---------------ccCEEEEEE---------EeCCCEEEEEeCCCCEEEEEC
Q 005254 556 GDKTIKIWSIS--DGSC--LKTFEGH---------------TSSVLRASF---------LTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 556 ~dg~i~iwd~~--~~~~--~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..+.|+.++.. ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56789998865 2321 1222221 123667888 566666666666788999985
Q ss_pred CCCeEEEEeccC------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 005254 608 RTGECIATYDKH------------------EDKIWALAVG-KKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 608 ~~~~~~~~~~~~------------------~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+|...... +. -.....|+++ +++.++++=...+.|+..+++
T Consensus 373 -~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66543322 11 1236789999 667666666667778887764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00025 Score=68.94 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=114.7
Q ss_pred cceEEcCC--CCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc----C-eEEEEECCCCeE
Q 005254 23 GPLVVSSD--GSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS----R-EIRVWDLSTLKC 94 (706)
Q Consensus 23 ~~~~~s~d--g~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d----~-~i~iwd~~~~~~ 94 (706)
..|+++|+ +..|+++.. +.|+.+|+.+++..... ........++++++|+ |..+... . .+...+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 37999985 444444444 78999999888765544 3445679999999999 4444431 1 233333322111
Q ss_pred -EEEeeccCCCeEEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-e-CCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 95 -LRSWKGHDGPAIGMACHP-SGGLLATAGADRKVLVWDVDGGFCTHYF-K-GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 95 -~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
...+. .......++++| ++.+.++-..++.|+.++..++.....+ . +.......++|+|+++. ++++-...+.|
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYvad~~~~~I 297 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYIIYNGKHCI 297 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEEETTTTEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEEeCCCCEE
Confidence 01122 234456789999 6665555556788999999877652222 2 12223357999999874 34555567889
Q ss_pred EEEECC--CCee--EEEeecc---------------cceEEEEEE---------ecCCCEEEEEeCCCEEEEEeC
Q 005254 171 RVWDLL--AKKC--VATLDKH---------------FSRVTSMAI---------TSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 171 ~vwd~~--~~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l~~~~~dg~i~~w~~ 217 (706)
+.+++. ++.. ...+.+. -.....+++ .++|.+.++-...+.|+.++.
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 998865 2321 1122111 123567888 566665555556678888874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00045 Score=67.07 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=144.1
Q ss_pred EEEeeeeeec-CCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC---CcCeEEEEE-------ecCCCeEEEEecCCC---
Q 005254 399 VLCLDTCALS-SGKILIVTGSKDNSVRLWDSESRCCVGVGTGH---MGAVGAVAF-------SKKLQNFLVSGSSDH--- 464 (706)
Q Consensus 399 i~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~l~~~~~d~--- 464 (706)
...+. +.| +...++++....+.|++.|..++......... ......++| ++++..++++...++
T Consensus 141 p~~la--~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLA--FDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEE--EETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCEEE--EccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 44554 666 35554555555578999999988777655432 235889999 999884444444432
Q ss_pred ---eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC-CCEEEEeeCCCcEEEEeCC-------CccE-----
Q 005254 465 ---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN-DSLVCTGSQDRTACVWRLP-------DLVS----- 528 (706)
Q Consensus 465 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~-------~~~~----- 528 (706)
.|.+++........ ..... ..... ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~-~~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFD-DRSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GEEEEEEEECCTTSCCS-TTSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred cCceEEEEecCCCCcee-ecccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 24555422211100 00000 11111 224567889995 5555566677889999987 4443
Q ss_pred ------EEE-Ee-ecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcC--CCce--EEEEeec---c------------cC
Q 005254 529 ------VVT-FR-GHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSIS--DGSC--LKTFEGH---T------------SS 580 (706)
Q Consensus 529 ------~~~-~~-~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~--~~~~--~~~~~~~---~------------~~ 580 (706)
... +. +.......++|+|++++|+.+ ...+.|+.++.. .+.. ...+-+. . ..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 122 11 223446799999999965544 556788886653 2221 1233221 0 12
Q ss_pred EE-EEEEE-------eCCCEEEEEeCCCCEEEEECCCCeEEEEeccC------------------------CCcEEEEEE
Q 005254 581 VL-RASFL-------TRGAQIVSCGADGLVKLWTVRTGECIATYDKH------------------------EDKIWALAV 628 (706)
Q Consensus 581 i~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~ 628 (706)
.. .+... ++|.+.++=..++.|+.++ .+|.. .++-+. -.....|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34 34443 4555666666678899998 46643 333221 123678999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCchhHHHHHH
Q 005254 629 GKK-TEMFATGGSDALVNLWHDSTAAEREEAF 659 (706)
Q Consensus 629 s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 659 (706)
+++ +.+.++=.....|+.++++.....+...
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 997 7666666677889999998876655443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0066 Score=66.69 Aligned_cols=570 Identities=12% Similarity=0.054 Sum_probs=283.8
Q ss_pred cceEEcCCCCEEEEeeC-CeEEEEEccCC--------eEEEeecCCCccEEEEEEccC----CCEEEEE---eccCeEEE
Q 005254 23 GPLVVSSDGSFIACACG-ESINIVDLSNA--------SIKSTIEGGSDTITALALSPD----DKLLFSS---GHSREIRV 86 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-~~i~i~d~~~~--------~~~~~l~~~~~~i~~l~~s~~----~~~l~s~---~~d~~i~i 86 (706)
.++++-.+| +|..|+. +.=.+|.+... +.+..+. .-++|..++.... ...|+++ +.+|.+++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 467777777 4445543 34344444322 3345554 4578998888642 2345544 34788888
Q ss_pred EECCCC-eEEEEeec-cCCCeEEEEEC---CCCCEEEEecCCCcEEEEECCCCeEEEEee--CCC---CcEEEEEEcCCC
Q 005254 87 WDLSTL-KCLRSWKG-HDGPAIGMACH---PSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHK---GVVSSILFHPDT 156 (706)
Q Consensus 87 wd~~~~-~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~---~~v~~~~~~~~~ 156 (706)
..-.=+ +.+..+.- .-..++.+... ....||+....+.+ .|+.+... .+.... +-. ..+.+-.+ ++
T Consensus 408 lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~- 483 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH- 483 (1158)
T ss_dssp EEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT-
T ss_pred EecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC-
Confidence 753211 22222211 22445555433 23568887766655 56665322 222221 111 11222222 22
Q ss_pred CceEEEEEecCCeEEEEECCCCeeEEEeeccc-ceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcc--eeeecCcceee
Q 005254 157 DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF-SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC--KLTVPTYEMVE 233 (706)
Q Consensus 157 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~--~~~~~~~~~~~ 233 (706)
+. ++=....+ |++.+...+..+..+.... ..|...+.. +..++.+. ++.+..+++.+++. .........+.
T Consensus 484 ~~--ivQVt~~~-Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evs 557 (1158)
T 3ei3_A 484 QQ--LIQITSAS-VRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVA 557 (1158)
T ss_dssp TE--EEEEESSC-EEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred Ce--EEEEecCE-EEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceE
Confidence 22 44444444 7888876655665554332 356666554 34666664 67888888765432 22233344555
Q ss_pred eEEeeCCCCCcccccccccchhhhccccccceEEEEecC-CCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEE
Q 005254 234 AVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGE-RGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATV 312 (706)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (706)
++...+.... ......++.+.. |++++++++++........... ...+..+.-..+
T Consensus 558 cl~i~~~~~~-----------------~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~------~~~p~si~l~~~ 614 (1158)
T 3ei3_A 558 CLDITPLGDS-----------------NGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG------EIIPRSILMTTF 614 (1158)
T ss_dssp EEECCCCSSS-----------------TTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS------SCCEEEEEEEEE
T ss_pred EEEeecCCCC-----------------cccccEEEEEECCCCEEEEEECCCCCeEEEEECCC------CCCCcEEEEEEe
Confidence 5554432110 011235666664 9999999998653332221100 011122222222
Q ss_pred ccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEee
Q 005254 313 LPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVL 392 (706)
Q Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~ 392 (706)
....++.++..||.+..+.+..... ... .......+. .++ .+...+..+..-+.+..+....+|.-.. +....
T Consensus 615 -~~~~~L~igl~dG~l~~~~~d~~tg-~l~-d~r~~~LG~-~pv-~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s- 687 (1158)
T 3ei3_A 615 -ESSHYLLCALGDGALFYFGLNIETG-LLS-DRKKVTLGT-QPT-VLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFS- 687 (1158)
T ss_dssp -TTEEEEEEEETTSEEEEEEECTTTC-CEE-EEEEEECCS-SCC-EEEEEESSSCEEEEEESSSCEEEEESSS-SEEEE-
T ss_pred -CCCcEEEEEeCCCeEEEEEEcCCCC-ccc-cceeEEcCC-Cce-EEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEe-
Confidence 3445688889999998887654221 111 111122222 222 2222222333333333344444444332 21111
Q ss_pred eCCcceEEEeeeeeecC--CCEEEEEeeCCCcEEEEeCCCce--EEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----
Q 005254 393 AGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRC--CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----- 463 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 463 (706)
.-....+..+.. |... .+. ++.. .++.+++..+.+-. .++.++ -...+..++++|..+.+.+..+..
T Consensus 688 ~l~~~~v~~~~~-F~se~~~~g-~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~ 763 (1158)
T 3ei3_A 688 NVNLKEVNYMCP-LNSDGYPDS-LALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDT 763 (1158)
T ss_dssp EBSSSCCCEEEE-ECCSSSTTE-EEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECS
T ss_pred ccChHHhceEec-cCcccCCCc-EEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEecccccc
Confidence 111122222221 2211 223 3333 34558887765322 233333 346788899999877444433221
Q ss_pred -Ce------------------------------------------EEEEEecCCCCCCCcccccceeEEE-eecCcceEE
Q 005254 464 -HT------------------------------------------IKVWSFDGLSDDAEQPMNLKAKAVV-AAHGKDINS 499 (706)
Q Consensus 464 -~~------------------------------------------i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 499 (706)
+. |++.|-.+ +...... ......+.+
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t----------~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 764 SGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT----------FEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp SSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT----------CCEEEEEECCTTEEEEE
T ss_pred ccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC----------CeEEEEEeCCCCcceEE
Confidence 10 11111100 0011000 111222444
Q ss_pred EE---EcCC-CCEEEEee----------CCCcEEEEeCCCccEEEEE-eecCCcEEEEEEccCCCEEEEecCCCcEEEEE
Q 005254 500 LA---VAPN-DSLVCTGS----------QDRTACVWRLPDLVSVVTF-RGHKRGIWSVEFSPVDQVVITASGDKTIKIWS 564 (706)
Q Consensus 500 ~~---~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 564 (706)
++ |..+ ..++++|+ ..|.|.+|++..++..... ....++|++++-- +|++|+.. ...|++|+
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 44 3222 46888886 3478999998754333222 2256788888744 35444433 36799999
Q ss_pred cCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEE--ECCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCC
Q 005254 565 ISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW--TVRTGECIATYD-KHEDKIWALAVGKKTEMFATGGSD 641 (706)
Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 641 (706)
+...+.++.-..+-..+..+.....+++++.|+.-..|.+. +...++....-+ .+...++++.|-.++ .++.+..+
T Consensus 911 l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~ 989 (1158)
T 3ei3_A 911 WTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENA 989 (1158)
T ss_dssp ECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred CCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCC
Confidence 98665444111122223334444567899999888777665 444555443333 456678888886554 67778999
Q ss_pred CcEEEEECCch
Q 005254 642 ALVNLWHDSTA 652 (706)
Q Consensus 642 g~i~vw~~~~~ 652 (706)
|.+.+.+.++.
T Consensus 990 gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 990 FNLFVCQKDSA 1000 (1158)
T ss_dssp SEEEEEEECTT
T ss_pred CcEEEEecCCC
Confidence 99999988764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00042 Score=63.17 Aligned_cols=198 Identities=11% Similarity=0.188 Sum_probs=127.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecC----CCe--E-EEEecC--CCeEEEEEecCCCCCCCccccc
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKK----LQN--F-LVSGSS--DHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~-l~~~~~--d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
++.....+-+.+||+ +++.+..+.. +.+..+..-|. ++. + +++... +++|.+|++.............
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 666677789999999 8888887753 66777777663 111 2 333334 5899999885322110000000
Q ss_pred ceeEEEeecCcceEEEEE--cCC-CC-EEEEeeCCCcEEEEeCC-------CccEEEEEeecCCcEEEEEEccCCCEEEE
Q 005254 485 KAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP-------DLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 553 (706)
.. . ....-..+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. ...+..+...+....|+.
T Consensus 120 ~~-p-v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 120 DH-P-IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp TS-C-EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred cc-C-cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 00 0 0011144566776 774 43 67788889999999882 3356666664 457889999998899999
Q ss_pred ecCCCcEEEEEcC-----CCceEEEEe-ecc-cCEEEEEEE--eCCC-EEEEEe-CCCCEEEEECC-CCeEEEEec
Q 005254 554 ASGDKTIKIWSIS-----DGSCLKTFE-GHT-SSVLRASFL--TRGA-QIVSCG-ADGLVKLWTVR-TGECIATYD 617 (706)
Q Consensus 554 ~~~dg~i~iwd~~-----~~~~~~~~~-~~~-~~i~~~~~s--~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~ 617 (706)
+-++.-|..++.+ +++.+..+. ++- ..+..|++- ++++ ||++.+ .+..+.+||.. +.+.+..+.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9998777777754 344554442 222 367888884 4555 676666 56799999997 677777774
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0027 Score=59.09 Aligned_cols=202 Identities=11% Similarity=0.189 Sum_probs=139.2
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~ 100 (706)
..+..++|..+.||.-.+..+.|+|+++.+.+....-. ..|.--.|-.+. .|+-.+ +..|+-|++.. ..++..+.-
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheec
Confidence 34678999999999999889999999999888776643 456666665543 455554 34899999974 356666665
Q ss_pred c----CCCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCc-eEEEEEec--
Q 005254 101 H----DGPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK-SLLFSGSD-- 166 (706)
Q Consensus 101 ~----~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~-- 166 (706)
| ...|..-..+++.++++..| ..|.+.+|+.+.+. -+.+.+|.+....+.+..+... .++..+..
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 4 45788888999999988754 24788999988664 4456777766655554332222 23333333
Q ss_pred -CCeEEEEECCCC---e-----eEEEe--e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 167 -DATVRVWDLLAK---K-----CVATL--D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 167 -dg~i~vwd~~~~---~-----~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
.+.+++-++... . ....+ + ...+-..+|..++.-..++..+.-|.+.+||+.++.++..-.
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 278888887432 1 11111 1 123445678888888899999999999999999988776544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.3e-05 Score=79.52 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=111.6
Q ss_pred CeEEEEEe-cCCCeEEEEecCCC----eEEEEEecCC-CCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-
Q 005254 443 AVGAVAFS-KKLQNFLVSGSSDH----TIKVWSFDGL-SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD- 515 (706)
Q Consensus 443 ~v~~~~~~-~~~~~~l~~~~~d~----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d- 515 (706)
.+...+|| |||+.++++...+| .|+++|+.++ .... . .+. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------~--~~~---~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------D--KVS---GTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------C--CEE---EECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------c--ccc---CceeeEEEecCCCEEEEEEECC
Confidence 56788999 99985555554443 4999998876 3110 0 011 113568899999888877665
Q ss_pred ----CcEEEEeCCCcc--EEEEEe-ecCCcEEEEEEccCCCEEEEecC---CCcEEEEEcCCCc-eE--EEEe-ecccCE
Q 005254 516 ----RTACVWRLPDLV--SVVTFR-GHKRGIWSVEFSPVDQVVITASG---DKTIKIWSISDGS-CL--KTFE-GHTSSV 581 (706)
Q Consensus 516 ----g~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~-~~~~~i 581 (706)
..|+++++.++. ....+. ........+.|||||++|+.... ...|+++|+.++. .. ..+. ......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 258888887763 223333 22334678899999999887653 3468889987752 22 3332 233444
Q ss_pred EEEEEEeCCCEEEEEe-CC----CCEEEEECCCCeEEEE-eccCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 582 LRASFLTRGAQIVSCG-AD----GLVKLWTVRTGECIAT-YDKHED--KIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 582 ~~~~~s~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
..+.|+. |+.|+..+ .+ ..|..+|+.++..... +-.|.. .+..+.+. .+.++++...+|...+|-
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 4444443 55554443 33 2577777765321122 223333 34555554 234556677778655554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0043 Score=57.89 Aligned_cols=268 Identities=10% Similarity=0.041 Sum_probs=141.2
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee----CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
..+.++.+.+ .+..+++ ...+.|. .....++.-.... .....+..+. +.+ +..++. +..+.|.. ...
T Consensus 36 ~~~~~v~~~~-~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~--~~~--~~~~~~-g~~g~i~~-S~D 106 (327)
T 2xbg_A 36 ATILDMSFID-RHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVS--FQG--NEGWIV-GEPPIMLH-TTD 106 (327)
T ss_dssp SCEEEEEESS-SSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEE--EET--TEEEEE-EETTEEEE-ESS
T ss_pred CcEEEEEECC-CCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEE--ecC--CeEEEE-ECCCeEEE-ECC
Confidence 4566776654 3344444 4455543 3333332211111 1234566665 544 443444 45565544 222
Q ss_pred CceEEEEEe---CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 430 SRCCVGVGT---GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 430 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
.++.-.... .....+..+.+.+++. +++.+ .++.| |....... . -..........+..+++.+++
T Consensus 107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v--~~S~DgG~------t--W~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 107 GGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAI--YRTKDSGK------N--WQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCE--EEESSTTS------S--EEEEECSCCCCEEEEEECTTS
T ss_pred CCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCccE--EEEcCCCC------C--CEEeecCCCcceEEEEEcCCC
Confidence 232222221 2234567787777654 44444 45543 33322110 1 112222334568889999999
Q ss_pred CEEEEeeCCCcEEEEeC--CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee----cccC
Q 005254 507 SLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG----HTSS 580 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~ 580 (706)
.+++++...+..+-.|- .+.+.+. ......+..+++.+++..++. +.+|.+++.+...++.-..+.. +...
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~ 251 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVG 251 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred cEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence 88877654433333442 2333332 234567889999998876654 5678777764322332222221 1235
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD---KHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+..+.+.+++..++++ .+|.+ .+....|+.-..+. .+...+.++.|.+++. +++++.+|.|.-++
T Consensus 252 ~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 252 FLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred eEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 7888898887766665 46766 34445554433343 2345678888875554 66677899776655
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0036 Score=60.85 Aligned_cols=253 Identities=11% Similarity=0.029 Sum_probs=142.6
Q ss_pred eeeEeeEeCC-CCcEEEEEecCCcEEEEeCCCceeeEeeeCCc---ceEEEeeeee-------ecCCCEEEEEeeCCC--
Q 005254 355 EILDLKFLGE-EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS---EIVLCLDTCA-------LSSGKILIVTGSKDN-- 421 (706)
Q Consensus 355 ~v~~~~~~~~-~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~-------~~~~~~~l~~~~~dg-- 421 (706)
....+++.|. ++.++++....+.|++.|+..+.......... .....++ + .++++.++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCc
Confidence 4556777774 44555555555789999999887766554322 2456666 7 788887455544442
Q ss_pred ----cEEEEeCCC-ceEE-----EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec-------CCCC-CCCcccc
Q 005254 422 ----SVRLWDSES-RCCV-----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD-------GLSD-DAEQPMN 483 (706)
Q Consensus 422 ----~i~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~-------~~~~-~~~~~~~ 483 (706)
.+.+++... +... ..+. .......++++|++..++++-..++.|..+|+. .+.. ....+..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665333 1211 1222 123445788899766677788888999999987 3321 0000000
Q ss_pred ---cceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCC--CccE--EEEEeec---------------CCcEE
Q 005254 484 ---LKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLP--DLVS--VVTFRGH---------------KRGIW 540 (706)
Q Consensus 484 ---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~v~ 540 (706)
.... ...........++++|+|++|.++ +....|+.++.. .+.. ...+-+. -....
T Consensus 297 ~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 297 PNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0011 112223456899999999965554 456778886543 3221 1222221 01234
Q ss_pred -EEEEc-------cCCCEEEEecCCCcEEEEEcCCCceEEEEeec------------------------ccCEEEEEEEe
Q 005254 541 -SVEFS-------PVDQVVITASGDKTIKIWSISDGSCLKTFEGH------------------------TSSVLRASFLT 588 (706)
Q Consensus 541 -~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~ 588 (706)
.++.. +++.++++=...+.|+.++ .++ .+.++-+. -.....+++.+
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 4566666666778899998 456 34444332 02356788887
Q ss_pred C-CCEEEEEeCCCCEEEEECCCCeEE
Q 005254 589 R-GAQIVSCGADGLVKLWTVRTGECI 613 (706)
Q Consensus 589 ~-~~~l~~~~~dg~i~iwd~~~~~~~ 613 (706)
+ |.+.++=..+..|+.+++.....+
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 6 554454445567777777655444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=83.75 Aligned_cols=240 Identities=10% Similarity=0.014 Sum_probs=137.6
Q ss_pred CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC----ceEEEEEeCCCcCeEEEEEe
Q 005254 375 IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES----RCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 375 ~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~ 450 (706)
...|+..++........+.... .+..++ +.+.++.++++-...+.|+.+++.. ......+.........+++.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~-~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR-NVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT-TCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred ccceEEEeCCCCcceeeeccCc-ceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 3577778877665543333322 334555 6777777555656678899998875 22222222222345678888
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC--CCcEEEEeCCCccE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ--DRTACVWRLPDLVS 528 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~ 528 (706)
+.+..++++-...+.|.++++.... ..............+++.|.+.+|+.... .+.|..+++.....
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~----------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVK----------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCC----------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred eeCCcEEEEeccCCeEEEEecCCCc----------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 6656566666677889998876531 11112222344678899997665555443 26787777653322
Q ss_pred EEEEeecCCcEEEEEEccCCCEEE-EecCCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
...+...-.....|+|+|++..|+ +-...+.|.++++.... ...+.. .......+++..+ ..+++....+.|..
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 222222233456899999765554 44556789999986433 333321 1122344555443 34455556689999
Q ss_pred EECCCCeEEEEeccCCCcEEEEEEc
Q 005254 605 WTVRTGECIATYDKHEDKIWALAVG 629 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~s 629 (706)
++..+|+.+..+.......+.|++.
T Consensus 610 ~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 610 ANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEccCCCceEEeecCCCCCcEEEEe
Confidence 9998998887775433334444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00096 Score=62.34 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=112.9
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCe-EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEEC--CCCeEEEEeecc
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNAS-IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDL--STLKCLRSWKGH 101 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~ 101 (706)
+++.++++.++++..+.|.. ....++ -.....++...+.+++++|++.+++.+...+..+-+|- .+.+.+. ...
T Consensus 127 i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~ 203 (327)
T 2xbg_A 127 IKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTT 203 (327)
T ss_dssp EEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCS
T ss_pred EEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCC
Confidence 67777787777765554432 223343 22223455668999999999988877654444444442 3334432 234
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 177 (706)
...+..+++++++..++++ .+|.+++.+.+.++.-..+.. +...+..+++.+++. ++.++.+|.| ++..+.
T Consensus 204 ~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~---~~~~g~~g~i-~~S~Dg 278 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE---VWLAGGAGAL-LCSQDG 278 (327)
T ss_dssp SSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC---EEEEESTTCE-EEESST
T ss_pred CCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE---EEEEeCCCeE-EEeCCC
Confidence 5788999999998866554 568777765443443332221 234588999988654 4455557766 455555
Q ss_pred CeeEEEeec---ccceEEEEEEecCCCEEEEEeCCCEEEEEeC
Q 005254 178 KKCVATLDK---HFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217 (706)
Q Consensus 178 ~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~ 217 (706)
++.-..+.. ....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 655444432 23567888887555 5777778998777653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0038 Score=58.89 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=62.0
Q ss_pred cceEEcCCCCEEEEeeCCeEEEEEccCCeEE--Eeec---CCCccEEEEEEccC---CCEEEEEec-c-----CeEEEEE
Q 005254 23 GPLVVSSDGSFIACACGESINIVDLSNASIK--STIE---GGSDTITALALSPD---DKLLFSSGH-S-----REIRVWD 88 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~--~~l~---~~~~~i~~l~~s~~---~~~l~s~~~-d-----~~i~iwd 88 (706)
..|+|.|||+++++-..+.|.+++ +++.. ..+. ........|+|+|+ +.+|.++.. . +.|..++
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 479999999977776667899998 44422 2221 22456799999998 555555433 2 6788888
Q ss_pred CCCCe-----E-EEEee---ccCCCeEEEEECCCCCEEEEec
Q 005254 89 LSTLK-----C-LRSWK---GHDGPAIGMACHPSGGLLATAG 121 (706)
Q Consensus 89 ~~~~~-----~-~~~~~---~~~~~v~~~~~s~~~~~l~~~~ 121 (706)
...+. . +..+. +.......++|.|||.+.++.+
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 87541 1 22233 1112336899999997666643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0014 Score=60.69 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=110.0
Q ss_pred CcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 421 NSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 421 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
..+.+||..+.+...............+...++. +++.|+.+ ..+.+||........ +...........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~-----W~~~~~~p~~r~ 104 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGV-----WYSVAPMNVRRG 104 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTCCTTCC-----CEEECCCSSCCB
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCE-EEEEcCCCCCccCceEEEEECCCCCCCe-----eEECCCCCCCcc
Confidence 3688889887764443221111111122223333 67777654 457888876543000 111111111111
Q ss_pred ceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEE
Q 005254 496 DINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIW 563 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw 563 (706)
....+. .++++++.|+.++ .+.+||+.+.+-... +......-..+. .+++.++.|+.+ ..+.+|
T Consensus 105 ~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 105 LAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp SCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred ceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEE
Confidence 112222 2677778877543 588899877643332 221111122222 267777777654 458899
Q ss_pred EcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEEe--ccCCCcEEEEEEcCCCCEEE
Q 005254 564 SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIATY--DKHEDKIWALAVGKKTEMFA 636 (706)
Q Consensus 564 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~ 636 (706)
|+.+.+-...-..........+...+++.++.|+.+ ..+.+||+.+.+-...- .........+.+ ++++++
T Consensus 181 d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (301)
T 2vpj_A 181 DPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA 258 (301)
T ss_dssp ETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred eCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence 987764432211111111112223366777777764 46899999887643322 211112222333 677777
Q ss_pred EEeCC-----CcEEEEECCch
Q 005254 637 TGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 637 ~~~~d-----g~i~vw~~~~~ 652 (706)
.|+.+ ..+.+||+.+.
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTT
T ss_pred EcCcCCCcccccEEEEcCCCC
Confidence 77765 34677777653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0004 Score=64.56 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=101.5
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC----CccEEEEEEccCCCEEEEEeccCeEEEEECCCCe------
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGG----SDTITALALSPDDKLLFSSGHSREIRVWDLSTLK------ 93 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~----~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~------ 93 (706)
-...+.+|+-++++.++.|+.-++.....-+.++.. -..|..+..||+|++||..+.. .|.|-.+..+.
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCH
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCccc
Confidence 355678999999999999998888744433444432 2268889999999999998765 78888886321
Q ss_pred ------EEEEeec------cCCCeEEEEECC---CCCEEEEecCCCcEEEEECCCCe--EEEEee---------CCCCcE
Q 005254 94 ------CLRSWKG------HDGPAIGMACHP---SGGLLATAGADRKVLVWDVDGGF--CTHYFK---------GHKGVV 147 (706)
Q Consensus 94 ------~~~~~~~------~~~~v~~~~~s~---~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~---------~~~~~v 147 (706)
..+.++- ...+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 1122321 257899999999 45689999999999999997521 22 222 233567
Q ss_pred EEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 148 SSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
.+++|.+++-..++++....|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 88888876555444444466666543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-05 Score=80.15 Aligned_cols=203 Identities=12% Similarity=0.041 Sum_probs=123.4
Q ss_pred cceEEcCCCCEEEEeeC--CeEEEEEccC----CeEEEeecCCCccEEEEEEccCCCEEEEE-eccCeEEEEECCCCeEE
Q 005254 23 GPLVVSSDGSFIACACG--ESINIVDLSN----ASIKSTIEGGSDTITALALSPDDKLLFSS-GHSREIRVWDLSTLKCL 95 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~--~~i~i~d~~~----~~~~~~l~~~~~~i~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~ 95 (706)
.+|+|+++++.|+++.. +.|..+++.+ ......+...-.....|++.+.+..|+.+ ...+.|.+.++......
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~ 488 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 488 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE
Confidence 37999998888877754 3799999875 22223332222344678888655444444 45678999998765444
Q ss_pred EEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 96 RSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 96 ~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
..+.........++++|.+.+|+.... .+.|.+.+++.......+...-.....|+|.|++.. ++++-...+.|..+
T Consensus 489 ~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~-LY~aD~~~~~I~~~ 567 (699)
T 1n7d_A 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR-LYWVDSKLHSISSI 567 (699)
T ss_dssp EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCC-EEEEETTTTEEEEE
T ss_pred EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCE-EEEEecCCCeEEEE
Confidence 333333345678899997766665542 267888877643322222223345678999998665 34444567889999
Q ss_pred ECCCCeeEEEee--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 174 DLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 174 d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
++........+. ........|++..+ .++++....+.|..++..+++.+..+.
T Consensus 568 d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 568 DVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 986443332222 11223445566543 344455566789999987777666554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0055 Score=55.41 Aligned_cols=193 Identities=12% Similarity=0.163 Sum_probs=119.6
Q ss_pred ceEEcCCCCEEEEee--CCeEEEEEccCCeEEE-eecC----C--CccEEEEEE---ccCCCEEEEEec-----------
Q 005254 24 PLVVSSDGSFIACAC--GESINIVDLSNASIKS-TIEG----G--SDTITALAL---SPDDKLLFSSGH----------- 80 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~--~~~i~i~d~~~~~~~~-~l~~----~--~~~i~~l~~---s~~~~~l~s~~~----------- 80 (706)
+++|.+....+.++. .+.|..||..++.... .+.+ . ...+..|.+ .|+++++++...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 588877555666655 4599999987664433 3332 1 125689999 688888776442
Q ss_pred --cCeEEEEECC---CCeEEEEee--cc-----------CCCeEEEEECCCCCEEEEecCC-CcEEEEECCCCeEEEEe-
Q 005254 81 --SREIRVWDLS---TLKCLRSWK--GH-----------DGPAIGMACHPSGGLLATAGAD-RKVLVWDVDGGFCTHYF- 140 (706)
Q Consensus 81 --d~~i~iwd~~---~~~~~~~~~--~~-----------~~~v~~~~~s~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~- 140 (706)
+..|..+|+. +++.+.... .. ......++..++|+.-++++.. +.|...+.+......-+
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence 5789999999 887766544 11 1347899999999988888877 77777776644322211
Q ss_pred eC----CCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee--EEEee-cc---cceEEE-EEEecCCCEEE-EEeC
Q 005254 141 KG----HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC--VATLD-KH---FSRVTS-MAITSDGSTLI-SAGR 208 (706)
Q Consensus 141 ~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-~~---~~~v~~-~~~~~~~~~l~-~~~~ 208 (706)
.. .....+.|+++|++.. |++....|.+..+|+.+... +..-. +. -..... +..-.+|+.|+ +...
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~--Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~ 254 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNK--LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA 254 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTE--EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred cCCCcccccCcceEEEeCCCCE--EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence 11 1223679999999865 55554499999999875433 21110 11 112333 33345777644 4444
Q ss_pred CCEEEEEeCC
Q 005254 209 DKVVNLWDLR 218 (706)
Q Consensus 209 dg~i~~w~~~ 218 (706)
.+.+.+.+.+
T Consensus 255 ~~~~~l~S~D 264 (334)
T 2p9w_A 255 PYAISFRSWD 264 (334)
T ss_dssp TEEEEEECSS
T ss_pred CCEEEEECCC
Confidence 5555555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0015 Score=59.02 Aligned_cols=199 Identities=12% Similarity=0.082 Sum_probs=124.0
Q ss_pred CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec-------CcceEEEEE---cCCCCE
Q 005254 439 GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH-------GKDINSLAV---APNDSL 508 (706)
Q Consensus 439 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~---s~~~~~ 508 (706)
.......+++|.+....++++.-..++|..|+...+. ........ ...+..+.+ .|++++
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----------~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----------HFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC----------EEEECCTTTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe----------EEEEecCCccccCCCcceeeEEEEeccCCCCcE
Confidence 3344455788888666566666689999999876432 11111111 113578999 688888
Q ss_pred EEEeeC-------------CCcEEEEeCC---CccEEEEEe--ecC-----------CcEEEEEEccCCCEEEEecCC-C
Q 005254 509 VCTGSQ-------------DRTACVWRLP---DLVSVVTFR--GHK-----------RGIWSVEFSPVDQVVITASGD-K 558 (706)
Q Consensus 509 l~~~~~-------------dg~i~i~d~~---~~~~~~~~~--~~~-----------~~v~~~~~s~~~~~l~~~~~d-g 558 (706)
+++... +..+..||+. +++.+.... ... .....++..++|+..++++.. +
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 876442 5779999998 776665544 211 247899999999999988877 8
Q ss_pred cEEEEEcCCCceEEEEeecc------cCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEec-c---CCCcEEE-
Q 005254 559 TIKIWSISDGSCLKTFEGHT------SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATYD-K---HEDKIWA- 625 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~---~~~~v~~- 625 (706)
.|...+.. ++.+..+.... ...+.+++.|+|+.|++....|.+..+|+.+... +..-. + .......
T Consensus 160 ~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi 238 (334)
T 2p9w_A 160 AIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI 238 (334)
T ss_dssp EEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE
T ss_pred eEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc
Confidence 77777754 43333332111 1356899999999998887799999999875432 21110 1 1112233
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEE
Q 005254 626 LAVGKKTEM-FATGGSDALVNLWH 648 (706)
Q Consensus 626 ~~~s~~~~~-l~~~~~dg~i~vw~ 648 (706)
+..-.+|+. |++.+..+.+.+.+
T Consensus 239 lp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 239 VTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEC
T ss_pred cccccCCEEEEEEcCCCCEEEEEC
Confidence 333347776 44555555444443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0017 Score=60.01 Aligned_cols=224 Identities=12% Similarity=0.093 Sum_probs=110.6
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCccc
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~ 482 (706)
+++.|+.+ ..+..||..+.+............ .+++. -++. +++.|+.+ ..+.+||.....
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~d~~~~~------- 88 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGL-VFAVGGFNGSLRVRTVDSYDPVKDQ------- 88 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-EEEESCBCSSSBCCCEEEEETTTTE-------
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCE-EEEEeCcCCCccccceEEECCCCCc-------
Confidence 35555543 357888888776444322111111 12222 2333 67777654 347777765432
Q ss_pred ccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEec
Q 005254 483 NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR-----TACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
+...............+. -++++++.|+.++ .+.+||+.+.+-... +.........+. -+++.++.|+
T Consensus 89 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 163 (302)
T 2xn4_A 89 -WTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGG 163 (302)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred -eeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeC
Confidence 111110111111112222 2677788887654 477888876643332 111111112222 2567777766
Q ss_pred CC-------CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEE--eccCCC
Q 005254 556 GD-------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YDKHED 621 (706)
Q Consensus 556 ~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~ 621 (706)
.+ ..+.+||+.+.+-...-......-...+...+++.++.|+.+ ..+.+||+.+.+-... +.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~ 243 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR 243 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence 43 358899987764332211111111111223367777777764 3689999988764332 211111
Q ss_pred cEEEEEEcCCCCEEEEEeCCC-----cEEEEECCch
Q 005254 622 KIWALAVGKKTEMFATGGSDA-----LVNLWHDSTA 652 (706)
Q Consensus 622 ~v~~~~~s~~~~~l~~~~~dg-----~i~vw~~~~~ 652 (706)
.-..+. .++++++.|+.++ .+.+||+.+.
T Consensus 244 ~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 244 NAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222 2677777777654 4788887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0022 Score=59.47 Aligned_cols=227 Identities=8% Similarity=0.043 Sum_probs=115.5
Q ss_pred CEEEEEeeC--CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC----CeEEEEEecCCCCCCCccccc
Q 005254 411 KILIVTGSK--DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD----HTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 411 ~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----~~i~i~~~~~~~~~~~~~~~~ 484 (706)
+.+++.|+. ...+.+||..+.+....-..........+..-++. +++.|+.+ ..+.+||..... +
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~d~~~~~--------W 82 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQLFPIKRMDCYNVVKDS--------W 82 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBSSSBCCEEEEEETTTTE--------E
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCCCCCcceEEEEeCCCCe--------E
Confidence 444666654 35788999988765543221111111112222433 67777654 567777766541 1
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecC
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG 556 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~ 556 (706)
...............+. -++++++.|+.+ ..+.+||..+.+-... +......-..+. -++++++.|+.
T Consensus 83 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 158 (306)
T 3ii7_A 83 YSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGS 158 (306)
T ss_dssp EEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred EECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCC
Confidence 11111111111112222 267788888765 4588999887653332 111111112222 25677777653
Q ss_pred ---------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEE--EeccCC
Q 005254 557 ---------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIA--TYDKHE 620 (706)
Q Consensus 557 ---------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~ 620 (706)
-..+.+||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||+.+.+-.. .+....
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 3458899988764332211111111112222366777777654 368999998875332 222222
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCch
Q 005254 621 DKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 621 ~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 652 (706)
....++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22233333 67777888754 45778887654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.02 Score=53.50 Aligned_cols=296 Identities=12% Similarity=0.110 Sum_probs=189.9
Q ss_pred CcEEEEeCCCceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 376 EQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.++.+.|+.++......+ .....+ .+|..+. ++.-. ...+.++|+++.+.+....-. ..|.--.|-.+.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAI------MnP~~~i-iALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~- 117 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAI------MNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN- 117 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEE------ECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-
T ss_pred CeEEEEECCCCCcceecccccceee------eCCCCcE-EEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-
Confidence 378889988765543222 122222 5566655 55443 779999999999988887654 356566666553
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec----CcceEEEEEcCCCCEEEEeeC-------CCcEEEEeC
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH----GKDINSLAVAPNDSLVCTGSQ-------DRTACVWRL 523 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d~ 523 (706)
.|+..+ +..|+-|++..... +...+..| +..|..-..+++.++++..+- .|.+.+|..
T Consensus 118 -~l~lVT-~taVyHWsi~~~s~---------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 118 -TVALVT-DNAVYHWSMEGESQ---------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV 186 (494)
T ss_dssp -EEEEEC-SSEEEEEESSSSCC---------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES
T ss_pred -eEEEEc-CCeeEEecccCCCC---------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec
Confidence 343333 45799999865221 22233222 456888888999998875442 367888987
Q ss_pred CCccEEEEEeecCCcEEEEEEccCC---CEEEEecC---CCcEEEEEcCCC--------ceEEEEe----ecccCEEEEE
Q 005254 524 PDLVSVVTFRGHKRGIWSVEFSPVD---QVVITASG---DKTIKIWSISDG--------SCLKTFE----GHTSSVLRAS 585 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~---dg~i~iwd~~~~--------~~~~~~~----~~~~~i~~~~ 585 (706)
+.. ....+.+|......+.+..+. +.++.+.. .+.+.|-++... +....+. ...+-..++.
T Consensus 187 er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq 265 (494)
T 1bpo_A 187 DRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (494)
T ss_dssp TTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE
T ss_pred ccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE
Confidence 644 445667776555444433211 23333333 268999998543 1111111 1123456788
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHH---
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE--- 662 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--- 662 (706)
.|+.-..+...+.-|.|++||+.++.++..-+-..+.|..-+-.....=++.....|.|.--.++............
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~ 345 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNP 345 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCH
T ss_pred ecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCH
Confidence 89888899999999999999999999999888778888777766665556777799999988888887666544211
Q ss_pred --HH-----------HHHhcchhhhhhhccchhHhhheeeecCC
Q 005254 663 --EE-----------AVLRGQELENAVLDADYTKAIQVAFELRR 693 (706)
Q Consensus 663 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (706)
.. .-+-.+..+......+|.++.+++.++..
T Consensus 346 ~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 346 DLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 00 11123446677788888888888877644
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.028 Score=52.92 Aligned_cols=191 Identities=16% Similarity=0.172 Sum_probs=106.1
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCe-EEEee---cCCCccEEEEEEccC---CCEEEEEec----c----CeEEE
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNAS-IKSTI---EGGSDTITALALSPD---DKLLFSSGH----S----REIRV 86 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~-~~~~l---~~~~~~i~~l~~s~~---~~~l~s~~~----d----~~i~i 86 (706)
...|++.|||+++++-..+.|.+++ .+++ .+..+ .........|+++|+ +..|.++.. + +.|..
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 3479999999977777667899887 4554 22222 122356799999998 555554432 3 67888
Q ss_pred EECCCC-------eEE-EEeec-cCCCeEEEEECCCCCEEEEecC-------------CCcEEEEECCCC---------e
Q 005254 87 WDLSTL-------KCL-RSWKG-HDGPAIGMACHPSGGLLATAGA-------------DRKVLVWDVDGG---------F 135 (706)
Q Consensus 87 wd~~~~-------~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~vw~~~~~---------~ 135 (706)
|+.... +.+ ..+.. .......|+|.|||.+.++.+. .+.|.-.+.+.. .
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 887654 111 22321 1123467999999987776442 145555555432 0
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEec--CC--eEEEEECCCCe------------------eEEEeecccceEEE
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSD--DA--TVRVWDLLAKK------------------CVATLDKHFSRVTS 193 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg--~i~vwd~~~~~------------------~~~~~~~~~~~v~~ 193 (706)
.+. ..++. ....++|.|+... |+++.. ++ .|.+.. .+. .+..+.........
T Consensus 190 ~i~-a~G~r-np~Gla~d~~~g~--l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 190 PIW-SYGHR-NPQGIDWHRASGV--MVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp CEE-EECCS-CCCEEEECTTTCC--EEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred cEE-EEccC-CcceEEEeCCCCC--EEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 111 12333 3467999994344 444332 22 233322 211 22222112245777
Q ss_pred EEEe-------cCCCEEEEEeCCCEEEEEeCCC
Q 005254 194 MAIT-------SDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 194 ~~~~-------~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
++|. .+|.++++.-..+.|...++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 8884 4666666555566777777664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0048 Score=56.98 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-----CcEEEEeCCCce---EEEEEeCCCcCeEEE
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRC---CVGVGTGHMGAVGAV 447 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~~v~~~ 447 (706)
..+..||+.+.+-...-..... ...... ... ++.+++.|+.+ ..+.+||..+.+ ...............
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~-r~~~~~-~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRK-RRYVAS-VSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSC-CBSCEE-EEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCCCCChh-hccccE-EEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 4688899887654332111111 000110 222 34456777654 368899988765 333322111111111
Q ss_pred EEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----Cc
Q 005254 448 AFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RT 517 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~ 517 (706)
+...++. +++.|+.+ ..+.+||..... +...............+. .++++++.|+.+ ..
T Consensus 108 ~~~~~~~-lyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 108 ATTLGDM-IYVSGGFDGSRRHTSMERYDPNIDQ--------WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNS 176 (301)
T ss_dssp EEEETTE-EEEECCBCSSCBCCEEEEEETTTTE--------EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCC
T ss_pred EEEECCE-EEEEcccCCCcccceEEEEcCCCCe--------EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccce
Confidence 2222444 66666643 357777765431 111111111111112222 267788887755 45
Q ss_pred EEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCC
Q 005254 518 ACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590 (706)
Q Consensus 518 i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 590 (706)
+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-..........+...++
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 254 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECC
Confidence 88999877644332 1111111222222 56777777764 468999998765432211111111112233367
Q ss_pred CEEEEEeCCC-----CEEEEECCCCe
Q 005254 591 AQIVSCGADG-----LVKLWTVRTGE 611 (706)
Q Consensus 591 ~~l~~~~~dg-----~i~iwd~~~~~ 611 (706)
+.++.|+.++ .+.+||+.+.+
T Consensus 255 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 255 RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 7777777653 57888987765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.019 Score=53.00 Aligned_cols=227 Identities=9% Similarity=0.055 Sum_probs=113.0
Q ss_pred cEEEEEec--CCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC----CcEEEEeCCCceEEEEEeCC
Q 005254 367 QYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD----NSVRLWDSESRCCVGVGTGH 440 (706)
Q Consensus 367 ~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~ 440 (706)
.+++.|+. ...+..||..+.+-...-..... -..... ... ++.+++.|+.+ ..+.+||..+.+........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~-~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK-RRDAAC-VFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCC-CBSCEE-EEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcc-cceeEE-EEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34444443 35788999887664432111111 001110 122 34457777654 56889999887655443322
Q ss_pred CcCeEEEEEecCCCeEEEEecCC------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC
Q 005254 441 MGAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514 (706)
Q Consensus 441 ~~~v~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 514 (706)
.......+..-+++ +++.|+.+ ..+.+||..... +............. +++. -++++++.|+.
T Consensus 90 ~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~ 158 (306)
T 3ii7_A 90 TPRDSLAACAAEGK-IYTSGGSEVGNSALYLFECYDTRTES--------WHTKPSMLTQRCSH-GMVE-ANGLIYVCGGS 158 (306)
T ss_dssp SCCBSCEEEEETTE-EEEECCBBTTBSCCCCEEEEETTTTE--------EEEECCCSSCCBSC-EEEE-ETTEEEEECCE
T ss_pred ccccceeEEEECCE-EEEECCCCCCCcEeeeEEEEeCCCCc--------eEeCCCCcCCccee-EEEE-ECCEEEEECCC
Confidence 22222222222444 66777655 457788876542 10110010011111 1222 26677777764
Q ss_pred ---------CCcEEEEeCCCccEEEEE--eecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEE--EEee
Q 005254 515 ---------DRTACVWRLPDLVSVVTF--RGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLK--TFEG 576 (706)
Q Consensus 515 ---------dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~ 576 (706)
-..+.+||+.+.+-...- ......-..+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+..
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 236 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred CCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence 345889998876433221 111111122222 56777777653 358899987764322 1111
Q ss_pred cccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCe
Q 005254 577 HTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGE 611 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 611 (706)
.......+. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 237 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 237 KGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 111222222 267777888754 468889998765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0083 Score=55.36 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=107.2
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCC-----CcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKD-----NSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
..+..||+.+.+-...-.... +...... ... ++.+++.|+.+ ..+.+||..+.+...............+..
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~-~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPS-RRCRAGM-VYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEE-EEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCc-ccccceE-EEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 457888888765433211111 1000010 112 44457777654 358889988876554432222211111122
Q ss_pred cCCCeEEEEecCCC-----eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-------CcE
Q 005254 451 KKLQNFLVSGSSDH-----TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-------RTA 518 (706)
Q Consensus 451 ~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------g~i 518 (706)
-++. +++.|+.++ .+.+||..... +............. +++. -++++++.|+.+ ..+
T Consensus 107 ~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~--------W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 107 LNGL-LYAVGGFDGSTGLSSVEAYNIKSNE--------WFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp ETTE-EEEEEEECSSCEEEEEEEEETTTTE--------EEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCE
T ss_pred ECCE-EEEEcCCCCCccCceEEEEeCCCCe--------EeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEE
Confidence 2444 666666543 46667765431 11110011111111 2222 266777777643 358
Q ss_pred EEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCC
Q 005254 519 CVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGA 591 (706)
Q Consensus 519 ~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~ 591 (706)
.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-...-..............+++
T Consensus 176 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 253 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGL 253 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCE
Confidence 8999877643332 1111111222222 57777787754 3689999877643322111111111112233677
Q ss_pred EEEEEeCCC-----CEEEEECCCCeE
Q 005254 592 QIVSCGADG-----LVKLWTVRTGEC 612 (706)
Q Consensus 592 ~l~~~~~dg-----~i~iwd~~~~~~ 612 (706)
.++.|+.++ .+.+||+.+.+-
T Consensus 254 i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 254 LYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEECCcCCCcccccEEEEcCCCCeE
Confidence 778887654 489999987764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0059 Score=56.53 Aligned_cols=222 Identities=9% Similarity=0.071 Sum_probs=109.6
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEEeCCCcCeE-EEEEecCCCeEEEEecC----C-----CeEEEEEecCCCCCC
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVGTGHMGAVG-AVAFSKKLQNFLVSGSS----D-----HTIKVWSFDGLSDDA 478 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~----d-----~~i~i~~~~~~~~~~ 478 (706)
+++.|+.+ ..+.+||..+.+....-........ +++. -++. +++.|+. + ..+.+||.....-
T Consensus 27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W-- 102 (308)
T 1zgk_A 27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQW-- 102 (308)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTE-EEEECCEEEETTEEEECCCEEEEETTTTEE--
T ss_pred EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCE-EEEECCCcCCCCCCeecceEEEECCCCCeE--
Confidence 35555532 3588888887765443221111111 2222 2333 6666665 2 3577777654320
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEE
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 551 (706)
...............+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++++
T Consensus 103 ------~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 103 ------SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLY 172 (308)
T ss_dssp ------EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred ------eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEE
Confidence 011001111111122222 67777777644 3588899877643322 1111111222222 56777
Q ss_pred EEecCC-----CcEEEEEcCCCceEEE--EeecccCEEEEEEEeCCCEEEEEeCC-----CCEEEEECCCCeEEEE--ec
Q 005254 552 ITASGD-----KTIKIWSISDGSCLKT--FEGHTSSVLRASFLTRGAQIVSCGAD-----GLVKLWTVRTGECIAT--YD 617 (706)
Q Consensus 552 ~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~ 617 (706)
+.|+.+ ..+.+||+.+.+-... +.........+ .-+++.++.|+.+ ..+.+||+.+.+-... +.
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE--EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 777654 4588999876643221 11111111222 2367777777765 4689999988764322 21
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCch
Q 005254 618 KHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDSTA 652 (706)
Q Consensus 618 ~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~ 652 (706)
........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 11112222222 67777777754 34677777543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.01 Score=55.10 Aligned_cols=222 Identities=9% Similarity=0.102 Sum_probs=109.3
Q ss_pred EEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEecCCCeEEEEecC-------C----CeEEEEEecCCCCCCCcc
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSKKLQNFLVSGSS-------D----HTIKVWSFDGLSDDAEQP 481 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~-------d----~~i~i~~~~~~~~~~~~~ 481 (706)
++.|+ ..+..||..+++-... +..........+...++. +++.|+. . ..+..||.....-
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----- 79 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----- 79 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-----
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCE-EEEEcCcccCCCCCccccccceEEecCCCCeE-----
Confidence 55555 5788999998875432 111222333333344545 6666663 1 1256666654310
Q ss_pred cccceeEEEeecCcceEEEEEcCCCCEEEEeeCC--------CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD--------RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l 551 (706)
............. +++. -++++++.|+.+ ..+.+||..+.+-... +......-..+. .+++.+
T Consensus 80 ---~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 152 (315)
T 4asc_A 80 ---LGMPPLPSPRCLF-GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY 152 (315)
T ss_dssp ---EECCCBSSCEESC-EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred ---EECCCCCcchhce-eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence 0000000000011 1222 266777777742 3588999887643221 111111112222 356777
Q ss_pred EEecC-C-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCeEEEEec--c
Q 005254 552 ITASG-D-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATYD--K 618 (706)
Q Consensus 552 ~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~ 618 (706)
+.|+. + ..+.+||..+.+-...-..........+...+++.++.|+.++ .+.+||+.+.+-...-. .
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred EEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 77775 2 3589999877643221111111111122233677778887654 48899998875433221 1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCch
Q 005254 619 HEDKIWALAVGKKTEMFATGGSDA--------------LVNLWHDSTA 652 (706)
Q Consensus 619 ~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~vw~~~~~ 652 (706)
.......+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 233 ~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 233 ERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1112222333 667777777642 3667777654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.018 Score=53.80 Aligned_cols=143 Identities=11% Similarity=0.061 Sum_probs=98.3
Q ss_pred EEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeec----CCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCc-------
Q 005254 501 AVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGH----KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------- 569 (706)
Q Consensus 501 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------- 569 (706)
..+.+|..++++- ++.||.-++......+.+... -..|..+..+|+|.+||..+.. .|.|-.+..+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccc
Confidence 4455666666554 578888888755444454433 2367889999999999998654 69998887331
Q ss_pred -----eEEEEee------cccCEEEEEEEeC---CCEEEEEeCCCCEEEEECCCC--eEEEEec---------cCCCcEE
Q 005254 570 -----CLKTFEG------HTSSVLRASFLTR---GAQIVSCGADGLVKLWTVRTG--ECIATYD---------KHEDKIW 624 (706)
Q Consensus 570 -----~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~ 624 (706)
..+.+.- ...+|..+.|+|- +..|++-..|+.|++||+... ++. .++ .+...|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 1123322 2467999999984 568999999999999999852 222 222 2336789
Q ss_pred EEEEcCCCCEEEEEe--CCCcEEE
Q 005254 625 ALAVGKKTEMFATGG--SDALVNL 646 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~--~dg~i~v 646 (706)
+++|++++-.|...+ .+|.|+-
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999887666644 7787753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.01 Score=64.41 Aligned_cols=200 Identities=13% Similarity=0.213 Sum_probs=129.1
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEeecc-
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSWKGH- 101 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~- 101 (706)
+..++|..+.||.-.+..+.|+|+.+.+.+....- ..+|.--.|-.+. .|+..+ +..|.-|++.. ..++..|.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 57789999999999988999999998877665553 3466666776554 344443 34799999964 3455555544
Q ss_pred ---CCCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE-Eec---C
Q 005254 102 ---DGPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS-GSD---D 167 (706)
Q Consensus 102 ---~~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~---d 167 (706)
...|..-..+++.+|++..| ..|.+.+|+++.+. .+.+.||.+....+....+.....+++ +.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 46788888999999988754 35789999987654 334555655544444322111111222 211 2
Q ss_pred CeEEEEECCCC---ee------EEEe-e--cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeec
Q 005254 168 ATVRVWDLLAK---KC------VATL-D--KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 168 g~i~vwd~~~~---~~------~~~~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 227 (706)
+.+.|-++... .. +..+ + ....-..+|..++.-..++..+.-|.+.++|+.++.++..-.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 67888877432 11 0011 1 112334567778777788888999999999999887765543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.1 Score=48.43 Aligned_cols=170 Identities=5% Similarity=0.037 Sum_probs=97.7
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeEEE----eecCcceEEEEEcC--CCC-EEEEe-eC--CCcEEEEeCCCc-c---
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKAVV----AAHGKDINSLAVAP--NDS-LVCTG-SQ--DRTACVWRLPDL-V--- 527 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~s~--~~~-~l~~~-~~--dg~i~i~d~~~~-~--- 527 (706)
.+|.|.++|........ ...... .........+.+.+ ++. +|+++ .. +.+|.+|++... .
T Consensus 81 ~~G~I~~~d~~~~~~~~------~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~ 154 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV------SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLL 154 (355)
T ss_dssp -CCEEEEEETTSSSCCE------EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEE
T ss_pred CCCeEEEEecCCCCCce------EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEE
Confidence 68889999986432111 011111 11223556666655 443 34443 22 456778776543 2
Q ss_pred EEEEEee-cCCcEEEEEEccCCCEEEEecC-----------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 528 SVVTFRG-HKRGIWSVEFSPVDQVVITASG-----------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 528 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
.+..+.+ .-.....+.+.++|.+.++... .|.|.-+|. ++.. .+...-...+.++|+||
T Consensus 155 ~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~-~~~~~l~~pNGia~spD 231 (355)
T 3sre_A 155 HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR-VVAEGFDFANGINISPD 231 (355)
T ss_dssp EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE-EEEEEESSEEEEEECTT
T ss_pred EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE-EeecCCcccCcceECCC
Confidence 2223332 2245789999999998877541 244554544 4332 33333456789999999
Q ss_pred CCEEEEEe-CCCCEEEEECCC-CeE--EEEeccCCCcEEEEEEcC-CCCEEEEEeCC
Q 005254 590 GAQIVSCG-ADGLVKLWTVRT-GEC--IATYDKHEDKIWALAVGK-KTEMFATGGSD 641 (706)
Q Consensus 590 ~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 641 (706)
+++|..+. ..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 99887665 467899999863 432 2233 2245567788888 58877766533
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.03 Score=52.01 Aligned_cols=146 Identities=10% Similarity=0.109 Sum_probs=74.2
Q ss_pred CCCEEEEeeCC-------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC------CCcEEEEEcCCCceE
Q 005254 505 NDSLVCTGSQD-------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSISDGSCL 571 (706)
Q Consensus 505 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~ 571 (706)
++++++.|+.+ ..+.+||..+.+-...-..........+...++++++.|+. -..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 67777777754 24788888776433221111110101111245777777764 235899998876433
Q ss_pred EEEeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCeEEE--EeccCCCcEEEEEEcCCCCEEEEEeCC---
Q 005254 572 KTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIA--TYDKHEDKIWALAVGKKTEMFATGGSD--- 641 (706)
Q Consensus 572 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 641 (706)
..-..........+..-+++.++.|+.++ .+.+||+.+.+-.. .+.........+. .++++++.||.+
T Consensus 189 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~ 266 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQ 266 (318)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC
T ss_pred ECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccC
Confidence 22111111111112223667777776543 47789988765332 2221111222222 266777777654
Q ss_pred -----------CcEEEEECCch
Q 005254 642 -----------ALVNLWHDSTA 652 (706)
Q Consensus 642 -----------g~i~vw~~~~~ 652 (706)
..+.+||+.+.
T Consensus 267 ~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 267 LESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp ----CCBCCBCCCEEEEETTTT
T ss_pred CCCceeccceeeeEEEEeCCCC
Confidence 34667776553
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.19 Score=48.84 Aligned_cols=265 Identities=12% Similarity=0.061 Sum_probs=145.4
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeC------------------------------CcceEEEeeeeeecCCCEEEEEe
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTG 417 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------~~~~i~~~~~~~~~~~~~~l~~~ 417 (706)
.+.+++..|+++++-+.+++.+..+.- |...+..-+ -..+++++++-.
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEec
Confidence 366778889999999999888776541 111122111 224566656655
Q ss_pred eCCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEe--cCCCeEEEEecCCCeEEEEEecCCCCCC-CcccccceeEEEeec
Q 005254 418 SKDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFS--KKLQNFLVSGSSDHTIKVWSFDGLSDDA-EQPMNLKAKAVVAAH 493 (706)
Q Consensus 418 ~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 493 (706)
-.+.+|...++...++-+.+. .....+..+++. |+.. +++.++... +-+= +.+.... ..+.+..........
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~-yv~~~~e~~-~P~p--ndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTK-YVFANAEFI-IPHP--NDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCC-EEEEEECSC-EESS--CSSSCCCTTSTTEEEEEEEEETT
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCcc-EEEecceee-ccCC--CCCcccccCChhhceEEEEEcCC
Confidence 567788888888877666544 345678888886 4544 666665421 1100 0000000 000000000001111
Q ss_pred ----------CcceEEEEEcCCCCEEEEeeCCC---------------cEEEEe-------------------------C
Q 005254 494 ----------GKDINSLAVAPNDSLVCTGSQDR---------------TACVWR-------------------------L 523 (706)
Q Consensus 494 ----------~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~d-------------------------~ 523 (706)
..........++|++.++.+.+. .+.+++ .
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 12233445566777777766541 133443 3
Q ss_pred CC----ccEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCC------ce-------EEEEeecccCEEEEE
Q 005254 524 PD----LVSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDG------SC-------LKTFEGHTSSVLRAS 585 (706)
Q Consensus 524 ~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~~~ 585 (706)
+. +..+..+-.-......+.++|||++++.++ .+.++.++|+... +. ..+.+ -.-.....+
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~ 384 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTT 384 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEE
Confidence 32 111111112223445688999999987765 4788999998742 11 22222 234567899
Q ss_pred EEeCCCEEEEEeCCCCEEEEECCCC----------eEEEEeccCCCcEEEEE-----EcCCCCEEEEEe
Q 005254 586 FLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWALA-----VGKKTEMFATGG 639 (706)
Q Consensus 586 ~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~-----~s~~~~~l~~~~ 639 (706)
|.++|.-..+.--|..|.-|++... ..+..+.-|-.+-.-.+ -.+||++|++..
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999955556668999999999753 46666665544322111 145666666543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.16 Score=47.61 Aligned_cols=231 Identities=13% Similarity=0.130 Sum_probs=121.7
Q ss_pred eEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce-EEEEEe---CCCcCeEEEEEecC---CCeEEEEecC---C----
Q 005254 398 IVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC-CVGVGT---GHMGAVGAVAFSKK---LQNFLVSGSS---D---- 463 (706)
Q Consensus 398 ~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~~l~~~~~---d---- 463 (706)
....++ +.+++. ++++..+|.|++++. +++ .+..+. ........++++|+ +..+.++-.. +
T Consensus 30 ~P~~ia--~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIA--PLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEE--EEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEE--EcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345565 777765 444456699999974 444 222211 22356889999997 4434444332 3
Q ss_pred CeEEEEEecCCCCCCCccccccee-EEEe-ecCcceEEEEEcCCCCEEEEeeCC-------------CcEEEEeCCCc--
Q 005254 464 HTIKVWSFDGLSDDAEQPMNLKAK-AVVA-AHGKDINSLAVAPNDSLVCTGSQD-------------RTACVWRLPDL-- 526 (706)
Q Consensus 464 ~~i~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d~~~~-- 526 (706)
..|..|+......... ..+.. .... ........++|.|||.+.++.+.. |.|.-++....
T Consensus 105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p 181 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP 181 (354)
T ss_dssp EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence 5677777654311110 00011 1111 111234679999999877764321 44555554321
Q ss_pred ------cEEEEEeecCCcEEEEEEcc-CCCEEEEecCCC---cEEEEEcCCCc------------------eEEEEeecc
Q 005254 527 ------VSVVTFRGHKRGIWSVEFSP-VDQVVITASGDK---TIKIWSISDGS------------------CLKTFEGHT 578 (706)
Q Consensus 527 ------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg---~i~iwd~~~~~------------------~~~~~~~~~ 578 (706)
.......++. ....++|+| ++.++++-...+ .|.+.. .+. ++..+....
T Consensus 182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp TTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 0111112333 345799999 566555432221 133322 111 222331122
Q ss_pred cCEEEEEEE-------eCCCEEEEEeCCCCEEEEECCCC-eEE--EEe-ccCCCcEEEEEEcCCCCEEEEEe
Q 005254 579 SSVLRASFL-------TRGAQIVSCGADGLVKLWTVRTG-ECI--ATY-DKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 579 ~~i~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.....++|. .+|.++++....+.|...++... +.. ..+ ......+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356778883 56766666666678888888753 332 222 22345789999999998766654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.17 Score=47.55 Aligned_cols=232 Identities=13% Similarity=0.067 Sum_probs=117.7
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee--Eeee---CCcceEEEeeeeeecC---CCEEEEEeeCC-----C
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS--YVLA---GHSEIVLCLDTCALSS---GKILIVTGSKD-----N 421 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~--~~~~---~~~~~i~~~~~~~~~~---~~~~l~~~~~d-----g 421 (706)
....+++.+ ++. +.++...+.|.+++ .+... ..+. ........++ +.|+ ++.+.++-... +
T Consensus 32 ~P~~ia~~p-dG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia--~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 32 VPWALAFLP-DGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLA--LHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CEEEEEECT-TSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEE--ECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CceEEEEcC-CCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEE--ECCCCCCCCEEEEEEecCCCCCcc
Confidence 456788877 445 45556669999998 33321 1111 1234556666 7776 55644444432 5
Q ss_pred cEEEEeCCCce-----EE-EEEe---CCCcCeEEEEEecCCCeEEEEecC-------------CCeEEEEEecCCCCCCC
Q 005254 422 SVRLWDSESRC-----CV-GVGT---GHMGAVGAVAFSKKLQNFLVSGSS-------------DHTIKVWSFDGLSDDAE 479 (706)
Q Consensus 422 ~i~i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------d~~i~i~~~~~~~~~~~ 479 (706)
.|..++...+. .+ ..+. ........++|.|+|. +.++.+. .|.|.-++.+.. ....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCC
Confidence 77788776431 11 1132 1122346899999986 4444332 144544444321 0000
Q ss_pred cccc----cceeEEEeecCcceEEEEEcC-CCCEEEEeeCCCcE------EEEeCCCcc------------------EEE
Q 005254 480 QPMN----LKAKAVVAAHGKDINSLAVAP-NDSLVCTGSQDRTA------CVWRLPDLV------------------SVV 530 (706)
Q Consensus 480 ~~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i------~i~d~~~~~------------------~~~ 530 (706)
.+.. ........++ .....++|+| ++.++++-...+.+ .+.-+..+. +..
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 0000 0011112222 3357789999 66655553332221 122222221 222
Q ss_pred EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce------EEEEeecccCEEEEEEEeCCCEEEEEe
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC------LKTFEGHTSSVLRASFLTRGAQIVSCG 597 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~ 597 (706)
.+. +......++| .+|..+++....+.|...+++.... ...+......+..+++.|||.++++..
T Consensus 263 ~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 221 2234567787 4677766666677788777754321 122222335788899999987666654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.16 Score=47.17 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=111.7
Q ss_pred ceEEcCCCCEEEEe-------------eCCeEEEEEccC--CeEE-EeecC-----CCccEEEEEEcc--CCC-EEEEEe
Q 005254 24 PLVVSSDGSFIACA-------------CGESINIVDLSN--ASIK-STIEG-----GSDTITALALSP--DDK-LLFSSG 79 (706)
Q Consensus 24 ~~~~s~dg~~l~~~-------------~~~~i~i~d~~~--~~~~-~~l~~-----~~~~i~~l~~s~--~~~-~l~s~~ 79 (706)
.+++.|+|..++++ ..+.|.++|+++ ++.. ..+.+ .......+.+.+ ++. +|.++.
T Consensus 54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn 133 (355)
T 3sre_A 54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 133 (355)
T ss_dssp EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence 78899988665554 345899999873 3321 22333 223567777766 454 455552
Q ss_pred c---cCeEEEEECCCC----eEEEEeecc-CCCeEEEEECCCCCEEEEecC-----------------CCcEEEEECCCC
Q 005254 80 H---SREIRVWDLSTL----KCLRSWKGH-DGPAIGMACHPSGGLLATAGA-----------------DRKVLVWDVDGG 134 (706)
Q Consensus 80 ~---d~~i~iwd~~~~----~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-----------------d~~i~vw~~~~~ 134 (706)
. +..|.+|++... ..+..+.+. -...+.+++.++|.+.++... .|.|..++. +
T Consensus 134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~ 211 (355)
T 3sre_A 134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N 211 (355)
T ss_dssp CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--T
T ss_pred CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--C
Confidence 2 467888877543 233344432 246789999999987777531 234544444 3
Q ss_pred eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-Cee--EEEeecccceEEEEEEec-CCCEEEEEeCC-
Q 005254 135 FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-KKC--VATLDKHFSRVTSMAITS-DGSTLISAGRD- 209 (706)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d- 209 (706)
+. ..+...-...+.++|+||++. ++++-+..+.|..|++.. ++. .+.+ ...+....+++.+ +|++.+++..+
T Consensus 212 ~~-~~~~~~l~~pNGia~spDg~~-lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 212 DV-RVVAEGFDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp CC-EEEEEEESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred eE-EEeecCCcccCcceECCCCCE-EEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 32 222223455789999999876 344445678899999863 332 1233 2245678888988 58866656533
Q ss_pred CEEEEEe
Q 005254 210 KVVNLWD 216 (706)
Q Consensus 210 g~i~~w~ 216 (706)
+.|..|+
T Consensus 289 ~~v~~~~ 295 (355)
T 3sre_A 289 MRIFFYD 295 (355)
T ss_dssp HHHHSCC
T ss_pred eEEEEEC
Confidence 3444443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.027 Score=52.28 Aligned_cols=188 Identities=9% Similarity=0.041 Sum_probs=95.8
Q ss_pred eEEcCCCCEEEEeeC-----C-------eEEEEEccCCeEEE--eecCCCccEEEEEEccCCCEEEEEecc--------C
Q 005254 25 LVVSSDGSFIACACG-----E-------SINIVDLSNASIKS--TIEGGSDTITALALSPDDKLLFSSGHS--------R 82 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~-----~-------~i~i~d~~~~~~~~--~l~~~~~~i~~l~~s~~~~~l~s~~~d--------~ 82 (706)
-+...+++++++|+. . .+.+||+.+++-.. .+......-.++.+ ++++++.|+.+ .
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 344467788877772 1 28889998876432 11111111122222 56666666632 4
Q ss_pred eEEEEECCCCeEE--EEeeccCCCeEEEEECCCCCEEEEecC------CCcEEEEECCCCeEEEEe--eCCCCcEEEEEE
Q 005254 83 EIRVWDLSTLKCL--RSWKGHDGPAIGMACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYF--KGHKGVVSSILF 152 (706)
Q Consensus 83 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~ 152 (706)
.+.+||..+.+-. ..+......-.++. .+++.++.|+. -..+.+||+.+.+-...- ......-.++.+
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 195 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH 195 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence 5899999876522 22221112222222 35667777765 246899999887543321 111111122222
Q ss_pred cCCCCceEEEEEecCC-----eEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEeCCC--------------E
Q 005254 153 HPDTDKSLLFSGSDDA-----TVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGRDK--------------V 211 (706)
Q Consensus 153 ~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~ 211 (706)
+ + .+++.|+.++ .+.+||+.+.+-...- ....... +++ .-+++.++.|+.++ .
T Consensus 196 --~-~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 269 (315)
T 4asc_A 196 --D-G-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLV-SLVGTLYAIGGFATLETESGELVPTELND 269 (315)
T ss_dssp --T-T-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred --C-C-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEE-EECCEEEEECCccccCcCCccccccccCc
Confidence 2 3 3455565443 5888998876543321 1111111 222 22666777776532 3
Q ss_pred EEEEeCCCCcc
Q 005254 212 VNLWDLRDYSC 222 (706)
Q Consensus 212 i~~w~~~~~~~ 222 (706)
+.+||+.+.+-
T Consensus 270 v~~yd~~~~~W 280 (315)
T 4asc_A 270 IWRYNEEEKKW 280 (315)
T ss_dssp EEEEETTTTEE
T ss_pred EEEecCCCChh
Confidence 66777776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.18 Score=47.38 Aligned_cols=136 Identities=13% Similarity=0.167 Sum_probs=77.3
Q ss_pred eccceEEcCCCC-EEEEeeCCeEEEEEccCCeEEEe---e----cCCCccEEEEEEccC---CCEEEEEe-c-------c
Q 005254 21 GGGPLVVSSDGS-FIACACGESINIVDLSNASIKST---I----EGGSDTITALALSPD---DKLLFSSG-H-------S 81 (706)
Q Consensus 21 ~~~~~~~s~dg~-~l~~~~~~~i~i~d~~~~~~~~~---l----~~~~~~i~~l~~s~~---~~~l~s~~-~-------d 81 (706)
....|+|.|||+ ++++-..+.|++++. .++.... + .........|+++|+ +.+|..+. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 344799999999 777666679999985 3433211 1 122346789999996 45554442 2 2
Q ss_pred CeEEEEECCCC-----eE--E-EEeec---cCCCeEEEEECCCCCEEEEecC-------------CCcEEEEECCCCe--
Q 005254 82 REIRVWDLSTL-----KC--L-RSWKG---HDGPAIGMACHPSGGLLATAGA-------------DRKVLVWDVDGGF-- 135 (706)
Q Consensus 82 ~~i~iwd~~~~-----~~--~-~~~~~---~~~~v~~~~~s~~~~~l~~~~~-------------d~~i~vw~~~~~~-- 135 (706)
..|..|++... .. + ..+.. ....-..|+|.|||.+.++.+. .+.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35777776533 11 1 11111 1122357999999976665433 2457777765320
Q ss_pred ----------EEEEe-eCCCCcEEEEEEcCCCCc
Q 005254 136 ----------CTHYF-KGHKGVVSSILFHPDTDK 158 (706)
Q Consensus 136 ----------~~~~~-~~~~~~v~~~~~~~~~~~ 158 (706)
....+ .++ .....++|.|+...
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~ 210 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA 210 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCC
Confidence 11111 223 34688999994344
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.026 Score=47.32 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=83.7
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE------EEEee--ccCCCeEEEEECCCCCEEEEecCCCcEEEEECC
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKC------LRSWK--GHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~ 132 (706)
..++.++|+|+|.+.++ .+|.+.-.+..+... -..+- +-. ...++.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 47789999999987666 677776666544211 11111 111 1478999999988887 56988877763
Q ss_pred CCeE-------EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe------eEEEe-ecccceEEEEEEec
Q 005254 133 GGFC-------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------CVATL-DKHFSRVTSMAITS 198 (706)
Q Consensus 133 ~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~-~~~~~~v~~~~~~~ 198 (706)
+... ...-..-=..+..|.|.|+|. |.+.. |+.++-+...++. ....+ +..-.....+.|.+
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 3110 011111225689999999987 56666 8876544333221 11111 12333455577899
Q ss_pred CCCEEEEEeCCCEEE
Q 005254 199 DGSTLISAGRDKVVN 213 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~ 213 (706)
++.+.++. +|.+.
T Consensus 192 ~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEE
T ss_pred CCcEEEEe--CCeEE
Confidence 88765555 77443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0055 Score=51.26 Aligned_cols=141 Identities=14% Similarity=0.067 Sum_probs=81.8
Q ss_pred eccceEEcCCCCEEEEeeCCeEEEEEccCCeEE------Eee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe
Q 005254 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIK------STI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK 93 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~------~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~ 93 (706)
.-..++|+|||.+.++ ..+.++-.+..++... ..+ .+.-..-.++.|.|+|.+.++ .||.|.-++-.+..
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~ 118 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD 118 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC
Confidence 3347999999998888 7778887776553221 111 111112478999999998888 56999888764321
Q ss_pred EEE------Ee-eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCe------EEEEee-CCCCcEEEEEEcCCCCce
Q 005254 94 CLR------SW-KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGF------CTHYFK-GHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 94 ~~~------~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~ 159 (706)
.-. .+ .+-=..+..|.|.|+|.+-++. |+.+.-+...++. ....+. ..-.....+.|.+++.
T Consensus 119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-- 194 (236)
T 1tl2_A 119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-- 194 (236)
T ss_dssp TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC--
T ss_pred CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc--
Confidence 110 11 1011467899999999887776 6765433332111 011111 2333445566888765
Q ss_pred EEEEEecCCeE
Q 005254 160 LLFSGSDDATV 170 (706)
Q Consensus 160 ~l~~~~~dg~i 170 (706)
|.... +|.+
T Consensus 195 -l~~v~-~g~~ 203 (236)
T 1tl2_A 195 -LFGVQ-GGKF 203 (236)
T ss_dssp -EEEEE-TTEE
T ss_pred -EEEEe-CCeE
Confidence 44444 6643
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.01 Score=54.59 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=120.7
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCC-CcCeEEEEE--ecCCCeEEEEe-cCCCeEEEEEecCCCCCCCcccccceeE
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGH-MGAVGAVAF--SKKLQNFLVSG-SSDHTIKVWSFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 488 (706)
+++.++.||.|.-+|..+|+.+..+... ..++....- .+.+...++.. ..||.+..++...+. ...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~----------~~~ 81 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL----------QKL 81 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE----------EEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc----------EEe
Confidence 3889999999999999999999887654 122221110 01122234443 578999888875441 111
Q ss_pred EEee----cCcceEE---EEE-----cCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCC-c------EEEEEEc----
Q 005254 489 VVAA----HGKDINS---LAV-----APNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR-G------IWSVEFS---- 545 (706)
Q Consensus 489 ~~~~----~~~~i~~---~~~-----s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~------v~~~~~s---- 545 (706)
.... ...++.. ..+ +..+..+++|+.+|.+...|+.+|+.+..+..... . ..|....
T Consensus 82 ~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~ 161 (339)
T 2be1_A 82 PLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL 161 (339)
T ss_dssp EEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred eeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence 1100 0111111 000 01456888999999999999999999998874211 0 0111110
Q ss_pred -cCCCEEEEecCCCcEEEEEcCCCceEEEE-----eecccC--E-EEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE-E
Q 005254 546 -PVDQVVITASGDKTIKIWSISDGSCLKTF-----EGHTSS--V-LRASFLTRGAQIVSCGADGLVKLWTVRTGECIA-T 615 (706)
Q Consensus 546 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~--i-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 615 (706)
..+..++.+..+..+.+.+ ++|+ +..+ ...... + ..-..+.|+.+ +.++.||.|.-+|..+|+.+. +
T Consensus 162 d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W~~ 238 (339)
T 2be1_A 162 QECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARWVS 238 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEEEC
T ss_pred ccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEEEe
Confidence 1235667666666666666 3443 2111 110000 0 00001124555 446788888888888887765 2
Q ss_pred eccCCCcEE--------------EEEEcC----------CCCEEEEEeCCCcEEEEECCchhHH
Q 005254 616 YDKHEDKIW--------------ALAVGK----------KTEMFATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 616 ~~~~~~~v~--------------~~~~s~----------~~~~l~~~~~dg~i~vw~~~~~~~~ 655 (706)
.+ -..++. -+.-.| +++.++..+.+|.+.-+....=...
T Consensus 239 ~~-l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~~ 301 (339)
T 2be1_A 239 PT-FPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPSL 301 (339)
T ss_dssp CC-CSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHHH
T ss_pred ec-CCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCcee
Confidence 21 122221 122223 3444444677999999987554433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.19 Score=47.25 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=123.7
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE---E----eCCCcCeEEEEEecC---CCeEEEEecC------
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---G----TGHMGAVGAVAFSKK---LQNFLVSGSS------ 462 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~~l~~~~~------ 462 (706)
...++ +.++++.++ ++...|.|++++.. +..... + .........++++|+ +..+.++-..
T Consensus 20 P~~i~--~~pdG~~l~-V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 20 PWALA--FLPDNHGML-ITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEE--ECSTTCCEE-EEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred cEEEE--EcCCCCEEE-EEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34555 788887424 44557899999854 322111 1 112345688999995 3434444332
Q ss_pred -CCeEEEEEecCCCCCCCcccccceeEEEee------cCcceEEEEEcCCCCEEEEeeCC-------------CcEEEEe
Q 005254 463 -DHTIKVWSFDGLSDDAEQPMNLKAKAVVAA------HGKDINSLAVAPNDSLVCTGSQD-------------RTACVWR 522 (706)
Q Consensus 463 -d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~i~d 522 (706)
...|..+++........ . ....+.. .......++|.|||.+.++.+.. |.|.-++
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~--~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---D--FRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---E--EEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred ceeEEEEEEECCCCCCCC---c--eEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 23566666543211000 0 1111111 11224679999999666654332 4566666
Q ss_pred CCCcc------------EEEEE-eecCCcEEEEEEcc-CCCEEEEecC-CCcEEEEEcCCC-------------------
Q 005254 523 LPDLV------------SVVTF-RGHKRGIWSVEFSP-VDQVVITASG-DKTIKIWSISDG------------------- 568 (706)
Q Consensus 523 ~~~~~------------~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~-dg~i~iwd~~~~------------------- 568 (706)
....- ....+ .++ .....++|+| ++.++++-.. ++.=.|.-+..+
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 54210 11111 122 3467899999 5554443211 111122211111
Q ss_pred ------------ceEEEEeecccCEEEEEEEe-------CCCEEEEEeCCCCEEEEECCCCeEEEEe---ccCCCcEEEE
Q 005254 569 ------------SCLKTFEGHTSSVLRASFLT-------RGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 626 (706)
Q Consensus 569 ------------~~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~ 626 (706)
.++..+. +...+..+.|.. +|.++++.-..+.|...++..++.+... ......+..+
T Consensus 250 ~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v 328 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDV 328 (353)
T ss_dssp TTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEE
T ss_pred CcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEE
Confidence 1122222 234567788864 4667776667778888888766544332 2223578999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECC
Q 005254 627 AVGKKTEMFATGG-SDALVNLWHDS 650 (706)
Q Consensus 627 ~~s~~~~~l~~~~-~dg~i~vw~~~ 650 (706)
++.|||.+.++.. .+| +||++.
T Consensus 329 ~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 329 RTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp EECTTSCEEEEECSTTE--EEEEEE
T ss_pred EECCCCcEEEEEeCCCC--EEEEEe
Confidence 9999998666433 344 566654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.018 Score=53.31 Aligned_cols=182 Identities=10% Similarity=0.116 Sum_probs=95.7
Q ss_pred CCCEEEEeeC----------CeEEEEEccCCeEEEe--ecCCCccEEEEEEccCCCEEEEEecc-----CeEEEEECCCC
Q 005254 30 DGSFIACACG----------ESINIVDLSNASIKST--IEGGSDTITALALSPDDKLLFSSGHS-----REIRVWDLSTL 92 (706)
Q Consensus 30 dg~~l~~~~~----------~~i~i~d~~~~~~~~~--l~~~~~~i~~l~~s~~~~~l~s~~~d-----~~i~iwd~~~~ 92 (706)
+++++++|+. +.+.+||+.+.+-... +......-.++.+ ++++++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6777777654 2589999988764322 2211222222333 66777776543 46889998876
Q ss_pred eEEE--EeeccCCCeEEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEE--eeCCCCcEEEEEEcCCCCceEEEE
Q 005254 93 KCLR--SWKGHDGPAIGMACHPSGGLLATAGAD-----RKVLVWDVDGGFCTHY--FKGHKGVVSSILFHPDTDKSLLFS 163 (706)
Q Consensus 93 ~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~ 163 (706)
+-.. .+......-.++.+ +++.++.|+.+ ..+.+||+.+.+-... +.........+.+ + + .+++.
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~-~iyv~ 221 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--H-N-CIYAA 221 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-T-EEEEE
T ss_pred eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--C-C-EEEEE
Confidence 5322 22222222223333 56777777643 4689999987754322 1111111222222 2 2 34566
Q ss_pred EecC-----CeEEEEECCCCeeEEE--eecccceEEEEEEecCCCEEEEEeCC-----CEEEEEeCCCCc
Q 005254 164 GSDD-----ATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGRD-----KVVNLWDLRDYS 221 (706)
Q Consensus 164 ~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~w~~~~~~ 221 (706)
|+.+ ..+.+||+.+.+-... +....... +++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 6553 5689999887654322 11111111 2222 256677777643 467788877654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.047 Score=50.71 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=103.0
Q ss_pred cEEEEeCCCceeeEe-eeCCc-ceEEEeeeeeecCCCEEEEEeeC----CC-------cEEEEeCCCceEEEEEeCCCcC
Q 005254 377 QVQVYDLSSMSCSYV-LAGHS-EIVLCLDTCALSSGKILIVTGSK----DN-------SVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~-~~~~~-~~i~~~~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
.+..||..+.+-... +.... ..-.++ ...++.. ++.|+. ++ .+..||..+.+...........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~---~~~~~~l-yv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSI---VTQQNQV-YVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEE---ECSSSCE-EEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceecccCCccCCccceEE---EEECCEE-EEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 478889887765431 11111 111111 2334444 666662 12 1778888877654432111111
Q ss_pred -eEEEEEecCCCeEEEEecCC-------CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeC-
Q 005254 444 -VGAVAFSKKLQNFLVSGSSD-------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ- 514 (706)
Q Consensus 444 -v~~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~- 514 (706)
-.+++.. ++. +++.|+.+ ..+.+||..... +............ .+++. .++++++.|+.
T Consensus 101 ~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--------W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~ 168 (318)
T 2woz_A 101 CLFGLGEV-DDK-IYVVAGKDLQTEASLDSVLCYDPVAAK--------WSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKT 168 (318)
T ss_dssp CSCEEEEE-TTE-EEEEEEEBTTTCCEEEEEEEEETTTTE--------EEEECCCSSCEES-CEEEE-ETTEEEEECCEE
T ss_pred cccceEEE-CCE-EEEEcCccCCCCcccceEEEEeCCCCC--------EeECCCCCCcccc-cEEEE-ECCEEEEEcCCC
Confidence 1122222 334 66666653 346667765431 0000000000001 11222 46777777764
Q ss_pred -----CCcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEE
Q 005254 515 -----DRTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVL 582 (706)
Q Consensus 515 -----dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~ 582 (706)
-..+.+||+.+.+-... +.........+.+ +++.++.|+.+ ..+.+||+.+.+-...-........
T Consensus 169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc
Confidence 23589999887643322 1111111122222 56777777653 3477899876643221111111111
Q ss_pred EEEEEeCCCEEEEEeCC--------------CCEEEEECCCCeEEE
Q 005254 583 RASFLTRGAQIVSCGAD--------------GLVKLWTVRTGECIA 614 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~ 614 (706)
..+...+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 247 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 247 ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 12223466777777654 357888988776443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.074 Score=58.09 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=171.0
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCe
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQN 455 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (706)
.++.+.|+.++...... ++.+=....+|..+. ++.-. ..++.++|+++...+....-. .+|.--.|-....
T Consensus 48 ~~vvIidl~~~~~~~rr-----pi~AdsAIMnP~~~i-iALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~- 118 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR-----PISADSAIMNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT- 118 (1630)
T ss_pred ceEEEEECCCCCCcccc-----cccchhhccCCCcce-EEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCe-
Confidence 37888898876544221 111111114555554 44443 778999999988877765543 3555556655433
Q ss_pred EEEEecCCCeEEEEEecCCCCCCCcccccc-eeEEEeecCcceEEEEEcCCCCEEEEee-------CCCcEEEEeCCCcc
Q 005254 456 FLVSGSSDHTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVAPNDSLVCTGS-------QDRTACVWRLPDLV 527 (706)
Q Consensus 456 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~ 527 (706)
|+..+ +..|.-|++.... .|.... ....+ .+..|..-..+++.++++..+ -.|.+.+|..+.+
T Consensus 119 -l~lVT-~~aVyHW~~~~~s----~P~k~fdR~~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~- 189 (1630)
T 1xi4_A 119 -VALVT-DNAVYHWSMEGES----QPVKMFDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK- 189 (1630)
T ss_pred -eEEEc-CCeEEEeccCCCC----ccHHHHhcchhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-
Confidence 33333 4569999996522 111111 11111 146688888899998887544 3477888887543
Q ss_pred EEEEEeecCCcEEEEEEcc--C-CCEEEEecC---CCcEEEEEcCCC---ce------EEEEee---cccCEEEEEEEeC
Q 005254 528 SVVTFRGHKRGIWSVEFSP--V-DQVVITASG---DKTIKIWSISDG---SC------LKTFEG---HTSSVLRASFLTR 589 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~--~-~~~l~~~~~---dg~i~iwd~~~~---~~------~~~~~~---~~~~i~~~~~s~~ 589 (706)
....+.+|......+.... . ...++.+.. .+.+.|-++... .. +..+.. ...-..++..++.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 3334455544433333221 1 122222211 267888888543 11 111111 1223446777877
Q ss_pred CCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCchhHHHHHHHHH-------
Q 005254 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTAAEREEAFRKE------- 662 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------- 662 (706)
-..+...+.-|.|+++|+.||.++..-+-....|...+-.....=++.....|.|.--.++......-.....
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi~~~l~~~~la~ 349 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLAL 349 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhHhhccCCHHHHH
Confidence 7788888999999999999999887766656666655554433334445567777776666655444332211
Q ss_pred ---------HHHHHhcchhhhhhhccchhHhhheeeecCC
Q 005254 663 ---------EEAVLRGQELENAVLDADYTKAIQVAFELRR 693 (706)
Q Consensus 663 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (706)
...-+-.+........+++.++.+++.+++.
T Consensus 350 ~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~ 389 (1630)
T 1xi4_A 350 RMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (1630)
T ss_pred HHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 0011222346677788888888888887754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.23 Score=45.16 Aligned_cols=179 Identities=7% Similarity=0.065 Sum_probs=107.8
Q ss_pred eccceEEcCCCCEEEEeeCC---------------eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe----cc
Q 005254 21 GGGPLVVSSDGSFIACACGE---------------SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG----HS 81 (706)
Q Consensus 21 ~~~~~~~s~dg~~l~~~~~~---------------~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~----~d 81 (706)
...+--++++|++|++.... .|+..++.+.+....... . +..|++++++|+-.. ..
T Consensus 54 ~~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 54 NDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSC
T ss_pred CCceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCC
Confidence 33355678999999999642 588888877664333222 1 237888999998775 34
Q ss_pred CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceE
Q 005254 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 82 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (706)
..|..-++.. .....+..+.. .+|+++++.|.-.+. ...|.+-+++.+.....+.+ ... ..++|+++.
T Consensus 129 ~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~-- 197 (302)
T 3s25_A 129 TSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTN-- 197 (302)
T ss_dssp EEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTE--
T ss_pred ceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCE--
Confidence 4566666654 33444543432 457888998887664 57888888887764443332 222 346688776
Q ss_pred EEEEecC--CeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC--CCEEEEEeCCCC
Q 005254 161 LFSGSDD--ATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR--DKVVNLWDLRDY 220 (706)
Q Consensus 161 l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w~~~~~ 220 (706)
|+-.... ..|..-++.... ...+.. ..+ ..|+|++..|+-+.. .+.|..-+++..
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 4433322 456666665444 333322 223 337888888876532 356666666543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.022 Score=54.06 Aligned_cols=136 Identities=8% Similarity=-0.069 Sum_probs=64.9
Q ss_pred CcEEEEeCCCccEEEE--EeecCCcEEEEEEccCCCEEEEecC------CCcEEEEEc--CCCceE--EEEeecccCEEE
Q 005254 516 RTACVWRLPDLVSVVT--FRGHKRGIWSVEFSPVDQVVITASG------DKTIKIWSI--SDGSCL--KTFEGHTSSVLR 583 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~--~~~~~~--~~~~~~~~~i~~ 583 (706)
..+.+||..+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+-. ..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 4688999887643332 22111110222222 5667777664 235777876 333221 111111111112
Q ss_pred EEEEeCCCEEEEEeCC----------------------CCEEEEECCCCe--EEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 584 ASFLTRGAQIVSCGAD----------------------GLVKLWTVRTGE--CIATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 584 ~~~s~~~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.+...+++.++.|+.+ ..+.+||+.+.+ .+..+......-.++. .++++++.||
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence 2334467777777632 257889988654 4444432222222333 3778888888
Q ss_pred CCC------cEEEEECCchhH
Q 005254 640 SDA------LVNLWHDSTAAE 654 (706)
Q Consensus 640 ~dg------~i~vw~~~~~~~ 654 (706)
.++ .+.++++++++.
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSC
T ss_pred eCCCCCEeeeEEEEEEcCcEe
Confidence 653 345557766654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.17 Score=46.50 Aligned_cols=143 Identities=8% Similarity=0.047 Sum_probs=85.5
Q ss_pred CEEEEEeccCeEEEEECCCCeEEEEeecc-CCCeEEEEE--CC-CCCEEEEe-cCCCcEEEEECCCCeEEEEeeC----C
Q 005254 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGH-DGPAIGMAC--HP-SGGLLATA-GADRKVLVWDVDGGFCTHYFKG----H 143 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--s~-~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~----~ 143 (706)
.+++.++.||.|.-.|.++|+.+.+++.. ..++....- .+ ++..++.. ..||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46788999999999999999999998764 123322110 01 23333333 5799999999988865544331 2
Q ss_pred CCcEEEEEEcCCC-------CceEEEEEecCCeEEEEECCCCeeEEEeeccc--ce-----EEEEEEe-----cCCCEEE
Q 005254 144 KGVVSSILFHPDT-------DKSLLFSGSDDATVRVWDLLAKKCVATLDKHF--SR-----VTSMAIT-----SDGSTLI 204 (706)
Q Consensus 144 ~~~v~~~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l~ 204 (706)
..++.. .=.|-- ....+++|+.+|.+...|+.+|+.+..+.... +. ..|.... ..+..++
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 222221 000000 12248999999999999999999998885331 10 1111111 1235677
Q ss_pred EEeCCCEEEEEe
Q 005254 205 SAGRDKVVNLWD 216 (706)
Q Consensus 205 ~~~~dg~i~~w~ 216 (706)
.+..+..+.+.+
T Consensus 170 ig~~~y~v~~~~ 181 (339)
T 2be1_A 170 IGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEECEECC
T ss_pred EecceEEEEEEC
Confidence 777777666666
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.073 Score=50.40 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=101.7
Q ss_pred cceeeceeee-eeeeccceEEcCCCCEEEEeeC-----------CeEEEEEccCCeEEE--eec-CCCccEEEEEEccCC
Q 005254 8 KSYGCEPVLQ-QFYGGGPLVVSSDGSFIACACG-----------ESINIVDLSNASIKS--TIE-GGSDTITALALSPDD 72 (706)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~-----------~~i~i~d~~~~~~~~--~l~-~~~~~i~~l~~s~~~ 72 (706)
..|...+.++ .-....+++. -+++++++|+. +.+.+||+.+.+-.. .+. .....-.++. .++
T Consensus 43 ~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~ 119 (357)
T 2uvk_A 43 KKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNG 119 (357)
T ss_dssp CCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETT
T ss_pred CCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECC
Confidence 5566655554 2222233333 36677776654 258999998876432 222 1112222222 567
Q ss_pred CEEEEEecc---------------------------------------CeEEEEECCCCeE--EEEeeccCCCeEEEEEC
Q 005254 73 KLLFSSGHS---------------------------------------REIRVWDLSTLKC--LRSWKGHDGPAIGMACH 111 (706)
Q Consensus 73 ~~l~s~~~d---------------------------------------~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s 111 (706)
++++.|+.+ ..+.+||..+.+- +..+......-.+++..
T Consensus 120 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 199 (357)
T 2uvk_A 120 KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK 199 (357)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE
T ss_pred EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE
Confidence 777888753 5799999987653 32222111110222222
Q ss_pred CCCCEEEEecC------CCcEEEEEC--CCCeEEEE--eeCCCCcEE-EEEEcCCCCceEEEEEecC-------------
Q 005254 112 PSGGLLATAGA------DRKVLVWDV--DGGFCTHY--FKGHKGVVS-SILFHPDTDKSLLFSGSDD------------- 167 (706)
Q Consensus 112 ~~~~~l~~~~~------d~~i~vw~~--~~~~~~~~--~~~~~~~v~-~~~~~~~~~~~~l~~~~~d------------- 167 (706)
+++.++.|+. ...+.+||+ .+.+-... +........ +++.. + +. +++.|+.+
T Consensus 200 -~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~-~~-iyv~GG~~~~~~~~~~~~g~~ 275 (357)
T 2uvk_A 200 -GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS-N-DS-LIFAGGAGFKGSRENYQNGKN 275 (357)
T ss_dssp -TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE-T-TE-EEEECCEECTTHHHHHHTTCS
T ss_pred -CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE-C-CE-EEEEcCccccCCcccccccce
Confidence 5666666653 345777887 44432221 111111111 12222 2 23 45555532
Q ss_pred ---------CeEEEEECCCCee--EEEeecccceEEEEEEecCCCEEEEEeCCC------EEEEEeCCCCcceeeec
Q 005254 168 ---------ATVRVWDLLAKKC--VATLDKHFSRVTSMAITSDGSTLISAGRDK------VVNLWDLRDYSCKLTVP 227 (706)
Q Consensus 168 ---------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~w~~~~~~~~~~~~ 227 (706)
..+.+||+.+.+- +..+...... ..+...+++.++.|+.++ .+.++++++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 276 YAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp STTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 2577899876543 2233222111 122334777888888543 46666888777665544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.65 Score=45.25 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEE--EeecC------CCccEEEEEEccC---CCEEEEEec----------
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIK--STIEG------GSDTITALALSPD---DKLLFSSGH---------- 80 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~--~~l~~------~~~~i~~l~~s~~---~~~l~s~~~---------- 80 (706)
..|+|.|||+++++-..+ .|++++..+++.. ..+.. .......|+|+|+ +.+|..+..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 479999999988877665 6998887656532 22221 2457789999995 555554432
Q ss_pred ---cCeEEEEECCCC-------eEEE-Eeec-cCCCeEEEEECCCCCEEEEecC
Q 005254 81 ---SREIRVWDLSTL-------KCLR-SWKG-HDGPAIGMACHPSGGLLATAGA 122 (706)
Q Consensus 81 ---d~~i~iwd~~~~-------~~~~-~~~~-~~~~v~~~~~s~~~~~l~~~~~ 122 (706)
...|.-|+...+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 1121 1221 1235789999999987776543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.79 Score=44.64 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=62.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE--EEee------cCCcEEEEEEccC---CCEEEEecC-------
Q 005254 495 KDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV--TFRG------HKRGIWSVEFSPV---DQVVITASG------- 556 (706)
Q Consensus 495 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~------~~~~v~~~~~s~~---~~~l~~~~~------- 556 (706)
.....|+|.|+|+++++-...+.|++++..++.... .+.. .......|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999977765444578888865554322 2221 2456779999995 555544432
Q ss_pred ------CCcEEEEEcCCC--c-----eEE-EEee-cccCEEEEEEEeCCCEEEEEeC
Q 005254 557 ------DKTIKIWSISDG--S-----CLK-TFEG-HTSSVLRASFLTRGAQIVSCGA 598 (706)
Q Consensus 557 ------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~i~~~~~s~~~~~l~~~~~ 598 (706)
...|.-+++..+ + .+. .+.. .......++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234666665432 1 111 1221 1234688999999987776553
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.78 Score=41.70 Aligned_cols=173 Identities=8% Similarity=0.116 Sum_probs=101.9
Q ss_pred EcCCCCEEEEee---CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc--------------CeEEEEEC
Q 005254 27 VSSDGSFIACAC---GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--------------REIRVWDL 89 (706)
Q Consensus 27 ~s~dg~~l~~~~---~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d--------------~~i~iwd~ 89 (706)
|+.+|.+|++.. ++.|+..+...... ..+... .+--++++|++|+-+... ..|+..++
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 456888998886 34788888654443 334322 234568999999876543 46777787
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEec----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEe
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAG----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
..++... +.. .. +..|++++++|+-.. ....|..-+++... ...+..+.. .+|+++++. +..+..
T Consensus 96 dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~-iy~t~~ 164 (302)
T 3s25_A 96 NGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY-FYYNNP 164 (302)
T ss_dssp TSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE-EEEECT
T ss_pred CCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE-EEEEeC
Confidence 7665332 221 11 236788999998775 33456666665433 334443433 456777765 333433
Q ss_pred cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC--CEEEEEeCCC
Q 005254 166 DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD--KVVNLWDLRD 219 (706)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~w~~~~ 219 (706)
....|.+-++..+.....+.+ ... ..+.|++.+|+-.... ..|..-+++.
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp TTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred CCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 467888888876654443332 222 2356888888766543 2455555443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.9 Score=42.02 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred cceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE--E----eCCCcCeEEEEEecC---CCeEEEEe--cCCC
Q 005254 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV--G----TGHMGAVGAVAFSKK---LQNFLVSG--SSDH 464 (706)
Q Consensus 396 ~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~~l~~~--~~d~ 464 (706)
-.....++ +.|++.. +++--..|.|++++..+++.... + .........++++|+ +..+.++- ..++
T Consensus 31 L~~P~~ia--~~pdG~l-lVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 31 LNSPWGLA--PLPGGDL-LVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp CSSEEEEE--ECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred CCCceEEE--EcCCCcE-EEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 33455666 7788764 55555589999998765543222 1 123456789999985 23233322 2445
Q ss_pred eEEEEEecCCCCCCCcccccceeE-EE-eecCcceEEEEEcCCCCEEEEeeC-------------CCcEEEEeCCCc---
Q 005254 465 TIKVWSFDGLSDDAEQPMNLKAKA-VV-AAHGKDINSLAVAPNDSLVCTGSQ-------------DRTACVWRLPDL--- 526 (706)
Q Consensus 465 ~i~i~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~--- 526 (706)
.|.-|.+.............+... .+ .........|+|.|||.+.++.+. .|.|.-++....
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~ 187 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP 187 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence 565566554221100110111111 11 112223567999999987777542 244554554321
Q ss_pred -----cEEEEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCc------------------eEEEEeecccCEE
Q 005254 527 -----VSVVTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGS------------------CLKTFEGHTSSVL 582 (706)
Q Consensus 527 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~------------------~~~~~~~~~~~i~ 582 (706)
.....-.+|. ....++|+|++.+.++= +.|+.=.|--+..+. ++..+..+.....
T Consensus 188 ~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 188 GNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp TCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 1111112343 34578999987765543 223322222222221 1223322223566
Q ss_pred EEEEEeCCCEEEEEeCCCCEEEEECCCCeE----EEEeccCCCcEEEEEEcCCCCEEEEEe
Q 005254 583 RASFLTRGAQIVSCGADGLVKLWTVRTGEC----IATYDKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 583 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.++|. +|..++..-..+.|....+..+.. ...+.+....+..+...|||.++++..
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 77776 455555555566777666655432 223444457899999999998766543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.05 E-value=1.2 Score=43.41 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=126.9
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCC-------------------------CcCeE--EEEEe---cCCCeEEEEec
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGH-------------------------MGAVG--AVAFS---KKLQNFLVSGS 461 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~v~--~~~~~---~~~~~~l~~~~ 461 (706)
..+.+|+..|.++++-+.+++.+..+.-. .+... .+.+. -||+.+++-.-
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 35889999999999999999988876411 11111 12222 24453344444
Q ss_pred CCCeEEEEEecCCCCCCCcccccceeE-EEeecCcceEEEEEc--CCCCEEEEeeCC-------CcE------------E
Q 005254 462 SDHTIKVWSFDGLSDDAEQPMNLKAKA-VVAAHGKDINSLAVA--PNDSLVCTGSQD-------RTA------------C 519 (706)
Q Consensus 462 ~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s--~~~~~l~~~~~d-------g~i------------~ 519 (706)
.+..|-..+++..+ ... ....+...+..+.+- |+-.+++++++. |.. .
T Consensus 151 an~RvAri~l~~~~----------~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 151 ANSRVARIRLDIMK----------CDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp TTTEEEEEETTTTE----------EEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred CCcceEEEECCcEe----------eceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 56666666665432 222 223344567777775 677777777642 221 0
Q ss_pred EEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC---------------cEEEEEc-------------------
Q 005254 520 VWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK---------------TIKIWSI------------------- 565 (706)
Q Consensus 520 i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~iwd~------------------- 565 (706)
..|..+.+...++.- .+........+++++.++.+.+. .+.++++
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 112222222222111 11222344566777776655431 2444443
Q ss_pred ------CC----Cce-EEEEeecccCEEEEEEEeCCCEEEEEeC-CCCEEEEECCC------Ce-------EEEEeccCC
Q 005254 566 ------SD----GSC-LKTFEGHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRT------GE-------CIATYDKHE 620 (706)
Q Consensus 566 ------~~----~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~------~~-------~~~~~~~~~ 620 (706)
+. +.. ...+. -....-.+.++|||++++.++. +.++.++|+.. ++ .+...+. .
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G 377 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G 377 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred eeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence 32 111 11111 1223446788999999877654 67899999873 11 1333332 3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 621 DKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 621 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
-.....+|.++|.-..|.-.|..|..|++...
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 45678899999965566678999999998543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.7 Score=48.15 Aligned_cols=191 Identities=10% Similarity=0.096 Sum_probs=99.5
Q ss_pred EEEEeeCC----CcEEEEeCCCceEEEEE-e-----CCCcC-eEEEEEec-CCCeEEEEecCC------CeEEEEEecCC
Q 005254 413 LIVTGSKD----NSVRLWDSESRCCVGVG-T-----GHMGA-VGAVAFSK-KLQNFLVSGSSD------HTIKVWSFDGL 474 (706)
Q Consensus 413 ~l~~~~~d----g~i~i~d~~~~~~~~~~-~-----~~~~~-v~~~~~~~-~~~~~l~~~~~d------~~i~i~~~~~~ 474 (706)
+++.|+.+ ..+.+||..+++..... . ..... -.+++..+ ++. +++.|+.+ ..+.+||....
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeCCCC
Confidence 35666543 45788888877654443 2 11111 12333332 444 67777654 24667776543
Q ss_pred CCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCC--cEEEEeCCCccEEEEEe-----ecCCcEEEEEEccC
Q 005254 475 SDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR--TACVWRLPDLVSVVTFR-----GHKRGIWSVEFSPV 547 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~s~~ 547 (706)
. +........ ...-.+++.-.++++++.|+.++ .+.+||..+..-...-. .......++.+..+
T Consensus 479 ~--------W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 479 E--------WSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp E--------EEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred c--------EEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 1 111110111 11112333334788888888655 68999988765332211 11122233555555
Q ss_pred -CCEEEEecC--C-----CcEEEEEcCCCce-----EEEEeec--ccCE-EEEEEEeCCCEEEEEeCC--------CCEE
Q 005254 548 -DQVVITASG--D-----KTIKIWSISDGSC-----LKTFEGH--TSSV-LRASFLTRGAQIVSCGAD--------GLVK 603 (706)
Q Consensus 548 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~--~~~i-~~~~~s~~~~~l~~~~~d--------g~i~ 603 (706)
++.++.|+. + ..+.+||+.+.+- -..+... .... .++....+++.++.|+.+ ..+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777765 2 3588999987761 1222111 1111 122333337777777743 4699
Q ss_pred EEECCCCeEE
Q 005254 604 LWTVRTGECI 613 (706)
Q Consensus 604 iwd~~~~~~~ 613 (706)
+||+.+.+-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=1.2 Score=46.45 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CCCCEEEEeeC-----CeEEEEEccCCeEEEee--------cCCCccEEEEEEccCCCEEEEEecc------CeEEEEEC
Q 005254 29 SDGSFIACACG-----ESINIVDLSNASIKSTI--------EGGSDTITALALSPDDKLLFSSGHS------REIRVWDL 89 (706)
Q Consensus 29 ~dg~~l~~~~~-----~~i~i~d~~~~~~~~~l--------~~~~~~i~~l~~s~~~~~l~s~~~d------~~i~iwd~ 89 (706)
.++.++++|+. +.+.+||+.+++-...- ......-.++.+..++++++.||.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 56777777763 36899999887643322 1111222333443377777777643 35888998
Q ss_pred CCCeE--EEEeeccCCCeEEEEECCCCCEEEEecCCC--cEEEEECCCCeEEEEee-----CCCCcEEEEEEcCCCCceE
Q 005254 90 STLKC--LRSWKGHDGPAIGMACHPSGGLLATAGADR--KVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSL 160 (706)
Q Consensus 90 ~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~ 160 (706)
.+.+- +..+...... .+++.-.+++.++.|+.++ .+.+||..+.+-...-. .......++.+..+. ..+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~-~~i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS-KQG 553 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT-TEE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC-CEE
Confidence 87542 2222211111 2233334788888887544 79999998876433211 111122334444432 334
Q ss_pred EEEEec--C-----CeEEEEECCCCee-----EEEeec---ccceEEEEEEecCCCEEEEEeC--------CCEEEEEeC
Q 005254 161 LFSGSD--D-----ATVRVWDLLAKKC-----VATLDK---HFSRVTSMAITSDGSTLISAGR--------DKVVNLWDL 217 (706)
Q Consensus 161 l~~~~~--d-----g~i~vwd~~~~~~-----~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------dg~i~~w~~ 217 (706)
++.|+. + ..+.+||+.+.+- -..+.. ....-.+++...+++.++.||. ...+.+||+
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 566654 2 4688999887761 122211 1111123333344677777764 245788888
Q ss_pred CCCcc
Q 005254 218 RDYSC 222 (706)
Q Consensus 218 ~~~~~ 222 (706)
.+.+-
T Consensus 634 ~t~~W 638 (695)
T 2zwa_A 634 LSETL 638 (695)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 76543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.23 E-value=0.83 Score=41.08 Aligned_cols=230 Identities=11% Similarity=0.032 Sum_probs=112.9
Q ss_pred EEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEE
Q 005254 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAV 447 (706)
Q Consensus 368 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 447 (706)
..+... +|.++.|-....-.+-........+..++ ......++. . ||.+..|-....-.+.....-...|..+
T Consensus 35 h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia----~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~i 107 (282)
T 3qhy_B 35 HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIA----AGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAI 107 (282)
T ss_dssp EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEE----ECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEE
T ss_pred eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEE----eCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEE
Confidence 333335 89999998664322211111122344442 122332444 4 8999999755422211111123467777
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCcc
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLV 527 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 527 (706)
+.... ..+.-. +|.|..|-........... .....|..++...+. .+.-. ||.|+.|-.....
T Consensus 108 a~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~----------~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 108 AAGAW---ASYALK-DGKVIAWGDDSDGQTTVPA----------EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp EEETT---EEEEEE-TTEEEEEECCTTSTTSCCG----------GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTS
T ss_pred ECcCC---EEEEEe-CCeEEEecCCCCCcCCCCc----------cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCC
Confidence 76655 333344 9999999876543211110 112345555554332 22223 6888888654321
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
.+..-......|..++...... ++. .||.|+.|-......+..-......|..++-... ..++ .. ||.|+.|=.
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~a-l~-~g~v~~wG~ 244 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLA-LK-NGKVIAWGS 244 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEE-EE-TTEEEEEST
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEE-EE-CCEEEEecC
Confidence 1111111235677777654333 333 5899999976543222111112235655554333 2333 33 899999965
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCC
Q 005254 608 RTGECIATYDKHEDKIWALAVGKK 631 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~ 631 (706)
....++.. ...|.+++....
T Consensus 245 n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 245 SRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp TCCCCGGG----SSCEEEEEECSS
T ss_pred CCCccccC----CCCcEEEEECcC
Confidence 54333211 335666655443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.96 E-value=0.58 Score=42.09 Aligned_cols=207 Identities=13% Similarity=0.092 Sum_probs=106.8
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
||.+..|-....-.+.........|..++..... .++. . ||.+..|-......... +.. ....|..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg~-P~~---------~~~~v~~ 106 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTTV-PAE---------ARSGVDA 106 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTCC-CGG---------GSSSEEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCCC-Ccc---------cCCCeEE
Confidence 8888888655322211111223466677765542 3333 4 89999998765432111 111 1235666
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
++...+ ..+.-. +|.|+.|-....-.+.........|..++...... ++. . ||.|+.|-......+..-..-..
T Consensus 107 ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l-~-~G~v~~wG~n~~gqlg~p~~~~~ 180 (282)
T 3qhy_B 107 IAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAV-K-NGGVIAWGDNYFGQTTVPAEAQS 180 (282)
T ss_dssp EEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-E-TTEEEEEECCTTSTTSCCGGGGS
T ss_pred EECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEE-E-CCEEEEecCCCCCCCCCceecCC
Confidence 666543 333334 88899986543221111111334577776654333 222 3 78899997654322211111134
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
.|..++...+ ..+.- .||.|+.|=....-.+..-......|..++...+...++ . ||.+..|--...
T Consensus 181 ~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 181 GVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSRT 247 (282)
T ss_dssp SEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTCC
T ss_pred CeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCCC
Confidence 5665554433 33333 589999996543322211111234577777654433333 3 999999976654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.64 E-value=2.7 Score=38.81 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=67.5
Q ss_pred EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE--Ee----eCCCCcEEEEEEcCC---CCceEEEEE--e
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH--YF----KGHKGVVSSILFHPD---TDKSLLFSG--S 165 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~----~~~~~~v~~~~~~~~---~~~~~l~~~--~ 165 (706)
.+...-.....|+|.|||.++++--..|.|++++..+++... .+ .........|+|+|+ ... +.++- .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~-lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHM-VYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCE-EEEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCE-EEEEEecC
Confidence 344344667899999999987776558999999876665322 12 123566899999996 233 23322 2
Q ss_pred cCCeEEEEECCCC----------eeE-EEeec-ccceEEEEEEecCCCEEEEEeCC
Q 005254 166 DDATVRVWDLLAK----------KCV-ATLDK-HFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 166 ~dg~i~vwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
.++.|.-|.+..+ +.+ ..+.. ....-..|.|.|||.+.++.+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 4556666766541 111 12221 11134568999999877776543
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.12 E-value=4.5 Score=36.01 Aligned_cols=186 Identities=9% Similarity=0.019 Sum_probs=108.4
Q ss_pred cCCCCEEEEeeCCe---EEEEEccCCeEEEeecCCCccEEEEEEcc-CCCEEEEEeccCeEEEEECCCC------eEEEE
Q 005254 28 SSDGSFIACACGES---INIVDLSNASIKSTIEGGSDTITALALSP-DDKLLFSSGHSREIRVWDLSTL------KCLRS 97 (706)
Q Consensus 28 s~dg~~l~~~~~~~---i~i~d~~~~~~~~~l~~~~~~i~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~------~~~~~ 97 (706)
+....++++...+. +.+|+++.++....+. ....|.++.... +..+++.++.+|.++...+... .....
T Consensus 33 ~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~ 111 (276)
T 3no0_A 33 PFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIK 111 (276)
T ss_dssp ETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSC
T ss_pred CCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEe
Confidence 34445556665554 3345555443222243 345666665422 5678999999999999987553 22223
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC---------CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG---------GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDA 168 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 168 (706)
++. ...+..+....+...++..+..|.+..++... |.....+. ....|..+...++++. ++..+..|
T Consensus 112 lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~--ll~~T~~G 187 (276)
T 3no0_A 112 LTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY--LLVITAKG 187 (276)
T ss_dssp CCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE--EEEEETTS
T ss_pred cCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE--EEEEeCCC
Confidence 332 34555555555666788888889988887632 22222233 2355666655554444 78888999
Q ss_pred eEEEEECCCC-------eeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEE--EeCCC
Q 005254 169 TVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL--WDLRD 219 (706)
Q Consensus 169 ~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--w~~~~ 219 (706)
.++...+..- +-+..+ ...+.+..+....+...++..+.+|.+.. ++..+
T Consensus 188 ~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 188 RVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp CEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred cEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 9988876432 222223 23344555444444456777777887777 76543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.35 E-value=6.6 Score=35.98 Aligned_cols=239 Identities=9% Similarity=0.060 Sum_probs=126.3
Q ss_pred CEEEEEeccCeEEEEECCCCe---------EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC---C------CC
Q 005254 73 KLLFSSGHSREIRVWDLSTLK---------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV---D------GG 134 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~---~------~~ 134 (706)
..+++.+.+|.|+--.+.+.+ .-..++ ....+..+........|+.-+..|.++-... . .|
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 456677778877765543211 111122 2234444444445555665566676655443 2 23
Q ss_pred eEEEEee--CCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCe-------eEEEeecccceEEEEEEecCCCEEE
Q 005254 135 FCTHYFK--GHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 135 ~~~~~~~--~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
..+..+- .....|..+...++ .+..+++..+.+|.++--.+.... ....++. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 3321111 13455655544432 123359999999999998765422 1122333 34555555555666788
Q ss_pred EEeCCCEEEEEeCC--CCccee---------eecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 205 SAGRDKVVNLWDLR--DYSCKL---------TVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 205 ~~~~dg~i~~w~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
..+..|.+..+... ...... .+...+.+..+...++ ...++..+..
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~-----------------------~~~ll~~T~~ 218 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE-----------------------GTYLLVATSG 218 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT-----------------------TCEEEEEETT
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC-----------------------CCEEEEEeCC
Confidence 88999999888876 322111 1111122222222211 2267888888
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecc
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVP 337 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 337 (706)
|.++.-.+..-...... ...............+..+....+...++..+.+|.+..+...+.+
T Consensus 219 G~~Krt~l~e~~~~~R~-~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~ 281 (327)
T 3uc1_A 219 GYAKRTAIEEYPVQGRG-GKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVR 281 (327)
T ss_dssp SEEEEEEGGGSCBCCTT-SCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSC
T ss_pred CcEEEEEHHHccccCcC-CCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhcc
Confidence 88887765432111110 0111122232323445555556677789999999999988877654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.25 E-value=6.8 Score=35.90 Aligned_cols=235 Identities=9% Similarity=0.039 Sum_probs=123.7
Q ss_pred EEEEeeCCCcEEEEeCCCc-------eEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCc--cc
Q 005254 413 LIVTGSKDNSVRLWDSESR-------CCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ--PM 482 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~--~~ 482 (706)
.+++-+.+|.|+--.+.+- +-+.... .....+..+....... .++.-++.|.++-............ -.
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 3677778888876543211 1111111 1233444444444434 4666666676655443322111000 00
Q ss_pred ccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCccE-------EEEEeecCCcEEEEEEccCCCEEE
Q 005254 483 NLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLVS-------VVTFRGHKRGIWSVEFSPVDQVVI 552 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~ 552 (706)
.......+ .....|..+..-+ +..+++..+.+|.++...+..... ...++. .+.+..+........|+
T Consensus 84 ~i~~~l~l-~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 84 HVANLLAF-QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EHHHHTTC-CTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EHHHccCC-CCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 00000001 1234455554333 578999999999999887654321 112332 34555555555566788
Q ss_pred EecCCCcEEEEEcC--CC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC-------eEEE
Q 005254 553 TASGDKTIKIWSIS--DG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG-------ECIA 614 (706)
Q Consensus 553 ~~~~dg~i~iwd~~--~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~ 614 (706)
..+..|.+..+... .- .....+. ....|.++...+++.+|+..+..|.++.-.+... +-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88889988888765 21 1111122 3456777776667779999999999988876432 2122
Q ss_pred Eec--cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCc
Q 005254 615 TYD--KHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651 (706)
Q Consensus 615 ~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 651 (706)
.++ .-.+.+..+....+...++..+.+|.+.-+++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 222 2133455544444445566677788777776543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.74 E-value=17 Score=39.41 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.5
Q ss_pred cEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe
Q 005254 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE 575 (706)
Q Consensus 538 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 575 (706)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999987754
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.97 E-value=8.2 Score=37.52 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=61.0
Q ss_pred ccceEEcCCCC--EEEEeeCCeEEEEEccCCe---EEEeec---------CCCccEEEEEEccC----CCEEEEEec--c
Q 005254 22 GGPLVVSSDGS--FIACACGESINIVDLSNAS---IKSTIE---------GGSDTITALALSPD----DKLLFSSGH--S 81 (706)
Q Consensus 22 ~~~~~~s~dg~--~l~~~~~~~i~i~d~~~~~---~~~~l~---------~~~~~i~~l~~s~~----~~~l~s~~~--d 81 (706)
..+|+|.|||+ ++++-..+.|++++..... .+..+. +.......|+|+|+ +.+.++-+. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 34799999996 7776666789999754321 112111 12457889999996 433333221 1
Q ss_pred ----------CeEEEEECCC----------CeEEEEee--ccCCCeEEEEECCCCCEEEEecCCC
Q 005254 82 ----------REIRVWDLST----------LKCLRSWK--GHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 82 ----------~~i~iwd~~~----------~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 2455566542 23333333 1223467899999998777766544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.49 E-value=16 Score=35.47 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=116.9
Q ss_pred EEEeeeeeecCCC-EEEEEeeCCCcEEEEeCCCc---eEEEEEeC---------CCcCeEEEEEecC----CCeEEEEec
Q 005254 399 VLCLDTCALSSGK-ILIVTGSKDNSVRLWDSESR---CCVGVGTG---------HMGAVGAVAFSKK----LQNFLVSGS 461 (706)
Q Consensus 399 i~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---~~~~~~~~---------~~~~v~~~~~~~~----~~~~l~~~~ 461 (706)
...++ +.|++. . ++++...|.|++++.... ..+..+.. .......|+++|+ +. +.++-+
T Consensus 16 P~~~a--~~pdG~~r-l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~-lYv~yt 91 (463)
T 2wg3_C 16 PVGAL--HSGDGSQR-LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGK-LYVSYT 91 (463)
T ss_dssp EEEEE--CCSSSSCC-EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCE-EEEEEE
T ss_pred ceEEE--ECCCCCeE-EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCE-EEEEEe
Confidence 34555 778885 4 445567899999975432 12222211 1356788999985 33 333322
Q ss_pred C--C----------CeEEEEEecCCCCCCCcccccceeEEE--eecCcceEEEEEcCCCCEEEEeeCCC-----------
Q 005254 462 S--D----------HTIKVWSFDGLSDDAEQPMNLKAKAVV--AAHGKDINSLAVAPNDSLVCTGSQDR----------- 516 (706)
Q Consensus 462 ~--d----------~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg----------- 516 (706)
. + ..|.-|.+.............+..... .........|+|.|||.+.++.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccC
Confidence 1 1 134445554321111111111111111 12233467899999998777655433
Q ss_pred ------cEEEEeCCCc--------------------cEEEEEeecCCcEEEEEEccC-----CC-EEEEecCCC----cE
Q 005254 517 ------TACVWRLPDL--------------------VSVVTFRGHKRGIWSVEFSPV-----DQ-VVITASGDK----TI 560 (706)
Q Consensus 517 ------~i~i~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~-----~~-~l~~~~~dg----~i 560 (706)
.|.-.+.... ....--.+|.. ...++|.|. |. ++..+...| .-
T Consensus 172 ~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ 250 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSA 250 (463)
T ss_dssp CCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CE
T ss_pred cCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCC
Confidence 2222333221 00011112322 346899986 33 444443212 12
Q ss_pred EEEEcCCC------ceEEEEeecc-cCEEEEEEEeC-------CCEEEEEeCCCCEEEEECCCCe---EEEEe-c-----
Q 005254 561 KIWSISDG------SCLKTFEGHT-SSVLRASFLTR-------GAQIVSCGADGLVKLWTVRTGE---CIATY-D----- 617 (706)
Q Consensus 561 ~iwd~~~~------~~~~~~~~~~-~~i~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~----- 617 (706)
.|..+..+ .++..+..|. ..+..+.|-.. |.+ +.+...+.|....+.... ....+ .
T Consensus 251 ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~-f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~ 329 (463)
T 2wg3_C 251 RILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSY-VFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGS 329 (463)
T ss_dssp EEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCE-EEEETTSCEEEEEC-----CCEEEEECEEETTS
T ss_pred eEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceE-EEecCCCcEEEEEeCCCCceeeEEEeecCCccc
Confidence 33333322 2344443221 46777777432 334 445555776666654332 11111 1
Q ss_pred ---cCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCc
Q 005254 618 ---KHEDKIWALAVGKKTEMFATGGSD-----ALVNLWHDST 651 (706)
Q Consensus 618 ---~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~ 651 (706)
.....+..+.+.|||.++++.... ..=+||++..
T Consensus 330 ~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 330 CRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp SCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred ccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 123578999999999987766521 2236788763
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.80 E-value=16 Score=34.57 Aligned_cols=248 Identities=11% Similarity=0.105 Sum_probs=119.0
Q ss_pred EEEEecCCCeEEEEECCCCeEEeeccC-cccccccc-CCCccceeEEEEccCCCeeEEEeeCCceEEEEeeecccc----
Q 005254 266 HFITVGERGIVRMWNADSACLYEQKSS-DVTISFEM-DDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK---- 339 (706)
Q Consensus 266 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 339 (706)
+.+....+|.|..|-....-.+-.... ........ ......+....+.......++.+.+|.++.|-.....+.
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 566777899999997543211000000 00000000 111223344566777788889999999999976543211
Q ss_pred ceeeEEeeEeccc-CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeC-CcceEEEeeeee
Q 005254 340 KMELILSKRLVGY-NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA 406 (706)
Q Consensus 340 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~ 406 (706)
.........+... ...+..++. .....++.+.+|.++.|-....- ....+.. ....+..++ .
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia--~ 218 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA--C 218 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--E
T ss_pred CccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE--E
Confidence 0111112222222 224555554 45566777788999999764311 0111111 122344443 2
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCc----------eEE-EEEeC-CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESR----------CCV-GVGTG-HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
-..... .+.-..+|.|..|-.... ... ..+.. ....|..++.... ..++-..+|.|..|-....
T Consensus 219 G~g~~~-t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~ 294 (389)
T 3kci_A 219 GSGDAQ-TLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ---FSVALTKSGAVYTWGKGDY 294 (389)
T ss_dssp CCSSCE-EEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT---EEEEEETTSCEEEEECCGG
T ss_pred cCCCcE-EEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCC
Confidence 111233 555567899999954321 111 11111 2224666665444 4555578899999976532
Q ss_pred CCCCCcccc-cceeEEEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 475 SDDAEQPMN-LKAKAVVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 475 ~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
......... ........ .....|..++.. ....++...||.|+.|=..
T Consensus 295 GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 295 HRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp GTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCC
Confidence 211100000 00011111 112345555543 3344555678888888654
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.52 E-value=14 Score=33.49 Aligned_cols=233 Identities=9% Similarity=-0.006 Sum_probs=120.4
Q ss_pred EEEEeeCCCcEEEEeCCCceEEE---------EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccc
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVG---------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMN 483 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 483 (706)
.+++.+.+|.|+--.+..-+... .+.. ...+..+....... .++..+..|.++-+.............-
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~-~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHD-HILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCC-EEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 37778888888776654322111 1122 23333333333333 5666777787666655432211110000
Q ss_pred c--ceeEEEeecCcceEEEEEc---CCCCEEEEeeCCCcEEEEeCCCcc-------EEEEEeecCCcEEEEEEccCCCEE
Q 005254 484 L--KAKAVVAAHGKDINSLAVA---PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 484 ~--~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
. .....+ .....|.++..- .++.+++..+.+|.++...+.... ....+..+ +.+..+........+
T Consensus 83 ~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 83 RPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp EEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred eEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 0 000011 233445555432 356678899999999988764221 11123333 555555555555667
Q ss_pred EEecCCCcEEEEEcCCC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC---------eEE
Q 005254 552 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG---------ECI 613 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~ 613 (706)
+..+.+|.+..++...- ...-.+. ....|.++....++..|++.+..|.++-.++... ...
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 77788888888876421 1111222 3356766655556678899999999988877321 112
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 614 ATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 614 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
..+..-.+.+..+....+...++..+.+|.+.-..+.
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 2222223455554443344455566777777666554
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.60 E-value=22 Score=33.66 Aligned_cols=291 Identities=10% Similarity=0.075 Sum_probs=125.5
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccC-ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc---
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSS-DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK--- 340 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 340 (706)
..++....+|.|..|-....-.+-.... ........ ..........+.-.....++.+.+|.++.|-......-.
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v-~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPC-EALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEEC-HHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEec-ccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 4677888999999996544211100000 00000000 000011222334455667788899999999755432110
Q ss_pred -eeeEEeeEecccCc-eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce-----------eeEeeeC-CcceEEEeeeee
Q 005254 341 -MELILSKRLVGYNE-EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS-----------CSYVLAG-HSEIVLCLDTCA 406 (706)
Q Consensus 341 -~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~-~~~~i~~~~~~~ 406 (706)
........+..... .+..+.. .......+..+.+|.|+.|-....- ....+.. ....+..++
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i-~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--- 165 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAV-NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--- 165 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEE-CTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE---
T ss_pred cCCccCCEEcccccCCceeEEEE-CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE---
Confidence 11111222222222 1222222 2355666777888999999754311 1111111 112344443
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCc----------e-EEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCC
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESR----------C-CVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGL 474 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~----------~-~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 474 (706)
..... .+.-..+|.|+.|-.... . ...... .....|..++...... ..+....+|.|..|-....
T Consensus 166 -~G~~h-s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~-~t~~l~~~G~v~~wG~n~~ 242 (389)
T 3kci_A 166 -AGGAH-SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDA-QTLCLTDDDTVWSWGDGDY 242 (389)
T ss_dssp -ECSSE-EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSC-EEEEEETTTEEEEEECCGG
T ss_pred -eCcCe-EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCc-EEEEEccCCEEEEEeCCCC
Confidence 12223 455567899999964321 0 111111 1233455665543212 5566678899999975432
Q ss_pred CCCCCcccccceeE-EEe-ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--------c---EEEEEee-cCCcEE
Q 005254 475 SDDAEQPMNLKAKA-VVA-AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL--------V---SVVTFRG-HKRGIW 540 (706)
Q Consensus 475 ~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--------~---~~~~~~~-~~~~v~ 540 (706)
.............. ... .....|..++.. ....++-..+|.|+.|-.... . ....+.. ....|.
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 21111000000111 111 112235555543 334445567888999864321 0 1111111 123466
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCC
Q 005254 541 SVEFSPVDQVVITASGDKTIKIWSISD 567 (706)
Q Consensus 541 ~~~~s~~~~~l~~~~~dg~i~iwd~~~ 567 (706)
.++... ...+....||.|+.|-...
T Consensus 321 ~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 321 AIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEECS--SEEEEEETTCCEEEEECCT
T ss_pred EEEecc--CeEEEECCCCCEEEeeCCC
Confidence 665543 3344446788888887643
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=23 Score=33.17 Aligned_cols=181 Identities=12% Similarity=0.185 Sum_probs=106.1
Q ss_pred ceEEcCCCCEEEEeeC----------------CeEEEEEccCC--eEEEeecCC------CccEEEEEEc---cC----C
Q 005254 24 PLVVSSDGSFIACACG----------------ESINIVDLSNA--SIKSTIEGG------SDTITALALS---PD----D 72 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~----------------~~i~i~d~~~~--~~~~~l~~~------~~~i~~l~~s---~~----~ 72 (706)
.+.+.+++++-+.=.+ -.|.+||+.++ ++++++.-. ...+..+++. |+ +
T Consensus 91 ~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~ 170 (381)
T 3q6k_A 91 QPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSE 170 (381)
T ss_dssp EEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCS
T ss_pred EEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCc
Confidence 4888888877664433 26899999999 888766542 3468889988 22 3
Q ss_pred CEEEEEe-ccCeEEEEECCCCeEEEEeec----c--------------CCCeEEEEECCC----CCEEEEecCCCcEEEE
Q 005254 73 KLLFSSG-HSREIRVWDLSTLKCLRSWKG----H--------------DGPAIGMACHPS----GGLLATAGADRKVLVW 129 (706)
Q Consensus 73 ~~l~s~~-~d~~i~iwd~~~~~~~~~~~~----~--------------~~~v~~~~~s~~----~~~l~~~~~d~~i~vw 129 (706)
.++..+. ..+.|.|+|+.+++.-+.+.. . ...|..|++||+ +++|....-.+ -++|
T Consensus 171 ~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly 249 (381)
T 3q6k_A 171 TFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVY 249 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEE
T ss_pred cEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEE
Confidence 4444443 367899999999876655421 0 247888999998 77777665433 2344
Q ss_pred ECCC-----C---eEEEEeeCC--CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCC-C---eeEEEeec--ccceEEE
Q 005254 130 DVDG-----G---FCTHYFKGH--KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA-K---KCVATLDK--HFSRVTS 193 (706)
Q Consensus 130 ~~~~-----~---~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~---~~~~~~~~--~~~~v~~ 193 (706)
.+.+ . ..+..+... ...-..++..+ .+..++++--..+.|..|+..+ . +....+.. .-.....
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~-~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~ 328 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDP-KTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTD 328 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECT-TTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEE
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeC-CCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCe
Confidence 4421 1 112222111 12334455542 2344566777788899999865 1 12222211 2234666
Q ss_pred EEEecCCCEEEEE
Q 005254 194 MAITSDGSTLISA 206 (706)
Q Consensus 194 ~~~~~~~~~l~~~ 206 (706)
+.+.++|.+.+..
T Consensus 329 ~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 329 ISVDSKGGLWFMS 341 (381)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCeEEEEE
Confidence 7666666543433
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.70 E-value=49 Score=35.91 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=33.5
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+.+++..++..++++.+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777788888899999999999999999999988764
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=84.55 E-value=21 Score=31.65 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=116.5
Q ss_pred CccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC-CCcEEEEEecCCcEEEE
Q 005254 303 SKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE-EEQYLAVATNIEQVQVY 381 (706)
Q Consensus 303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~~~~i~~~ 381 (706)
....+..+......+.++..++.|.++.....+.|.....- +....+.+..+.. .+ ++..++..+..|.+...
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-----ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~ 95 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-----LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKI 95 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-----CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-----cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEE
Confidence 45667777777888899999999999987766655332111 1334566666644 32 56789999999999998
Q ss_pred eCCCce------eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC---------ceEEEEEeCCCcCeEE
Q 005254 382 DLSSMS------CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES---------RCCVGVGTGHMGAVGA 446 (706)
Q Consensus 382 d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~ 446 (706)
.+.... ....+... +.+..+. ....... ++..+..|.+..+.... |.....+. ....|.+
T Consensus 96 ~l~~~~~~~~G~~~i~lkeg-D~l~~~~--~~~~~~~-ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~ 170 (276)
T 3no0_A 96 PLAEFEYKAQGMPIIKLTEG-DEVVSIA--SSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSG 170 (276)
T ss_dssp EGGGTTTCSTTEECSCCCTT-CCEEEEE--ECCSSCE-EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEE
T ss_pred EHHHhhhhcCCeEEEecCCC-CEEEEEE--EeCCCCE-EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEE
Confidence 875432 11122222 3333332 2233444 77778888887776432 21211222 2355666
Q ss_pred EEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEE--EeC
Q 005254 447 VAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACV--WRL 523 (706)
Q Consensus 447 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~ 523 (706)
+...+++. .++..+..|.++...+.......... +....+ .....+..+....+...++..+.+|.+.. ++.
T Consensus 171 ~~~~~~~~-~ll~~T~~G~~kr~~~~e~~~~~R~g---kGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 171 LRIWNGEP-YLLVITAKGRVKKISHEEIPKTNRGV---KGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEEESSCS-EEEEEETTSCEEEEEGGGSCCCCTTC---CCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEeCCCC-EEEEEeCCCcEEEeEHHHcccCCCCC---cceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 55555444 67888889999888876543211100 011111 22333444433333445566666676666 654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=83.33 E-value=26 Score=31.78 Aligned_cols=239 Identities=13% Similarity=0.136 Sum_probs=125.1
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEE---------EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC-------
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLR---------SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG------- 133 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~------- 133 (706)
++..++++.+.+|.|+--.+...+... .++.. ..+..+........++..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 456778888999999887664432111 12322 3344444444555677777788777666532
Q ss_pred --CeE---EEEeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCCe-------eEEEeecccceEEEEEEecCC
Q 005254 134 --GFC---THYFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAKK-------CVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 134 --~~~---~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~ 200 (706)
|.. ...+. ....|..+...++ .....++..+..|.++...+.... ....+.. .+.+..+....++
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 111 01122 2344555544331 112237788999999988774322 2222333 4566666665556
Q ss_pred CEEEEEeCCCEEEEEeCCCCcce-------eee--cCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEec
Q 005254 201 STLISAGRDKVVNLWDLRDYSCK-------LTV--PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (706)
..++..+.+|.+..+...+-... ..+ ...+.+..+....+ ...+++.+
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~-----------------------~~~l~~vt 219 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE-----------------------NPYLLIVS 219 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT-----------------------CSEEEEEE
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC-----------------------CCeEEEEE
Confidence 67889999999999887642211 111 11112222221111 12577788
Q ss_pred CCCeEEEEECCCCeEEeeccCccccccccC-CCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 272 ERGIVRMWNADSACLYEQKSSDVTISFEMD-DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 272 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
..|..+...+..-......... ....... .....+.......++..++..+..|.+.-.....
T Consensus 220 ~~G~~kr~~~~e~~~~~R~~kG-v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 220 ENGYGKRLNMSKISELKRGATG-YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp TTSEEEEEEGGGSCBCCTTCCC-EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCCceEEEEHHHhcccCCCCCC-EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 8888888776543221111111 1111222 2233444444556677788888888765554443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=82.67 E-value=3.9 Score=40.92 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=44.3
Q ss_pred ceEEcCCCCEEEEeeCC-------------eEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEE
Q 005254 24 PLVVSSDGSFIACACGE-------------SINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSS 78 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~-------------~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~ 78 (706)
+|+|+|+|++++.-.++ .+.+.+..+++..+.+.++ ...++.++|+||++.|.+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 79999999977665432 4677788889988888776 4589999999999988765
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.51 E-value=28 Score=31.50 Aligned_cols=249 Identities=12% Similarity=0.085 Sum_probs=125.3
Q ss_pred cCCCEEEEEeccCeEEEEECCCCeEEE---------EeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECC--------
Q 005254 70 PDDKLLFSSGHSREIRVWDLSTLKCLR---------SWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD-------- 132 (706)
Q Consensus 70 ~~~~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~-------- 132 (706)
|+..++++.+.+|.|+--.+.+.+..+ .++.. ..+..+........|+..+..|.++-....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 455678888999999877765433221 12222 333344444445556666677876665542
Q ss_pred -CCeEEE---EeeCCCCcEEEEEEcCC-CCceEEEEEecCCeEEEEECCCC-------eeEEEeecccceEEEEEEecCC
Q 005254 133 -GGFCTH---YFKGHKGVVSSILFHPD-TDKSLLFSGSDDATVRVWDLLAK-------KCVATLDKHFSRVTSMAITSDG 200 (706)
Q Consensus 133 -~~~~~~---~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~ 200 (706)
.|..+. .+. ....|..+...++ .+...++..+.+|.++--.+... .....+..+ +.+..+....+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 223221 122 3445666544321 12234888899999999876422 122223333 556565555556
Q ss_pred CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEE
Q 005254 201 STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280 (706)
Q Consensus 201 ~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 280 (706)
..++..+.+|.+..++..+-..... ....+..+... ++........ ......++..+..|..+-.+
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr--~a~Gv~~i~L~-~~d~Vv~~~~-----------~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGC--NTTGVRGIRLG-EGDKVVSLIV-----------PRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCT--TCCCEECCCCC-TTCCEEEEEC-----------CCSSCEEEEEETTSEEEEEC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCC--CCCCeEeEEeC-CCCEEEEEEE-----------ecCCCEEEEEEcCCceEEEE
Confidence 6788888999988887654322111 00111111111 1111100000 00012577788888888776
Q ss_pred CCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeec
Q 005254 281 ADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336 (706)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (706)
+..-... ..................+..+....+...++..+.+|.+..+.....
T Consensus 224 ~~e~~~~-~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 224 VAEYPTK-SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp GGGSCCC-CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred HHHhccC-CCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 5431111 000111112223333455556555566777889999998887776654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=81.53 E-value=31 Score=31.32 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=106.1
Q ss_pred EEEEeeCCCcEEEEeCCCceE-------EE--EEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcc--
Q 005254 413 LIVTGSKDNSVRLWDSESRCC-------VG--VGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP-- 481 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-- 481 (706)
.+++.+.+|.|+-..+..-+. +. .+.. ...+..+....... .++..+..|.++-+............
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~-~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHD-YLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTC-EEEEEETTSEEEEEEGGGSCC-------
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCC-EEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 377888899988775432211 11 1122 23344444443333 57777888887777654321110000
Q ss_pred cccceeEEEeecCcceEEEEEcC---CCCEEEEeeCCCcEEEEeCCCcc-------EEEEEeecCCcEEEEEEccCCCEE
Q 005254 482 MNLKAKAVVAAHGKDINSLAVAP---NDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 482 ~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
........+. ....|..+...+ +..+++..+.+|.++...+.... ....+.. .+.+..+....++..+
T Consensus 88 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred cChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 0000000111 223444444332 46678888999999988774332 2222332 4556666655556678
Q ss_pred EEecCCCcEEEEEcCCC---------ceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC
Q 005254 552 ITASGDKTIKIWSISDG---------SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 608 (706)
+..+.+|.+..+....- .....+. ....+..+....++..|++.+..|..+..++.
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 88889999888887431 1112222 23456666655566788899999999988875
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=5.4 Score=39.36 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=43.9
Q ss_pred ceEEcCCCCEEEEeeC-------------CeEEEEEccCCeEEEeecCC-CccEEEEEEccCCCEEEEEe
Q 005254 24 PLVVSSDGSFIACACG-------------ESINIVDLSNASIKSTIEGG-SDTITALALSPDDKLLFSSG 79 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-------------~~i~i~d~~~~~~~~~l~~~-~~~i~~l~~s~~~~~l~s~~ 79 (706)
.|+|+++|.+.+.... +.+..++..++++...+.+. ...++.++||||++.|.++-
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 7999999988774432 25788888889887777654 35799999999999988763
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.43 E-value=78 Score=35.28 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=31.7
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEec
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
.+.+++..++..+|++.+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788899999999999999999999887753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 706 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-37 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-30 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-29 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-31 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-29 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-25 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-24 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-19 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-18 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-18 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-24 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-22 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-22 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-22 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-22 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-20 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-16 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-22 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-21 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-16 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-18 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-11 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-16 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-15 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-13 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-15 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-14 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-15 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-15 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-15 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-14 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-14 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-14 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-12 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-13 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-12 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-13 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-12 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-10 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-09 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-12 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 6e-11 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-10 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-11 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-11 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-11 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-11 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-09 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 8e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 9e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 7e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-07 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-07 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 7e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.002 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 9e-06 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-05 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 4e-05 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 138 bits (348), Expect = 7e-37
Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 74/319 (23%)
Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
Y L+GH V + ++V+ S+D ++++WD E+ GH +V ++F
Sbjct: 11 YALSGHRSPVTRV---IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 450 SKKLQ-----------------------------------------NFLVSGSSDHTIKV 468
+ + +VS S D TIK+
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528
W H + + + + +L+ + S D+T VW +
Sbjct: 128 WEVQ----------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 177
Query: 529 VVTFRGHKRGIWSVEF--------------------SPVDQVVITASGDKTIKIWSISDG 568
R H+ + + + +++ S DKTIK+W +S G
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237
Query: 569 SCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
CL T GH + V F + G I+SC D +++W + C+ T + HE + +L
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297
Query: 629 GKKTEMFATGGSDALVNLW 647
K TG D V +W
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 119 bits (297), Expect = 4e-30
Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 23/210 (10%)
Query: 28 SSDGSFIACACGESINIVD-LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
+G I A + + + T G + + + + D L+ S + + +RV
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACH--------------------PSGGLLATAGADRKV 126
W ++T +C + H ++ G L + D+ +
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229
Query: 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186
+WDV G C GH V +LFH + S +DD T+RVWD K+C+ TL+
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 187 HFSRVTSMAITSDGSTLISAGRDKVVNLWD 216
H VTS+ +++ D+ V +W+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (287), Expect = 8e-29
Identities = 76/375 (20%), Positives = 128/375 (34%), Gaps = 67/375 (17%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
K + G +T + P ++ S+ I+VWD T R+ KGH ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
SG LLA+ AD + +WD G C GH VSS+ P+ D + S S D T+++
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKM 127
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
W++ CV T H V + DG+ + S D+ V +W + CK + + V
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
+ P S+ + G + S
Sbjct: 188 VECISWAPESS----------------------YSSISEATGSETKKSGKPGPFLLSGSR 225
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
D TI + LVG+
Sbjct: 226 DKTIKMWDVSTGM---------------------------------------CLMTLVGH 246
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
+ + + F +++ + + ++V+D + C L H V L
Sbjct: 247 DNWVRGVLFH-SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL---DFHKTAP 302
Query: 413 LIVTGSKDNSVRLWD 427
+VTGS D +V++W+
Sbjct: 303 YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.9 bits (216), Expect = 1e-19
Identities = 62/234 (26%), Positives = 93/234 (39%), Gaps = 31/234 (13%)
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
+GH V V F + +VS S D TIKVW ++ + + H +
Sbjct: 14 SGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYE----------TGDFERTLKGHTDSV 62
Query: 498 NSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGD 557
++ + L+ + S D T +W + T GH + SV P +++AS D
Sbjct: 63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122
Query: 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
KTIK+W + G C+KTF GH V G I SC D V++W V T EC A
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 618 KHEDKIWALA--------------------VGKKTEMFATGGSDALVNLWHDST 651
+H + ++ GK +G D + +W ST
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.3 bits (204), Expect = 6e-18
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%)
Query: 10 YGCEPVLQQFYGGGPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALAL 68
+ + G G F+ + +I + D+S T+ G + + +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255
Query: 69 SPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLV 128
K + S + +RVWD +C+++ H+ + H + + T D+ V V
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
Query: 129 WD 130
W+
Sbjct: 316 WE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.6 bits (197), Expect = 4e-17
Identities = 43/165 (26%), Positives = 77/165 (46%)
Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
K ++ H + + P S++ + S+D T VW T +GH + + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 547 VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606
+++ + S D TIK+W C++T GH +V S + G IVS D +K+W
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 607 VRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
V+TG C+ T+ H + + + + + A+ +D V +W +T
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 123 bits (309), Expect = 2e-31
Identities = 58/332 (17%), Positives = 113/332 (34%), Gaps = 44/332 (13%)
Query: 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413
+I D + + + NI+ V M L GH + + + L
Sbjct: 16 NQIRDARKACADATLSQITNNIDPV---GRIQMRTRRTLRGHLAKIYAM---HWGTDSRL 69
Query: 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473
+V+ S+D + +WDS + V V A++ N++ G D+ +++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKT 128
Query: 474 LSDDAEQPMNLKAKA-----------------------------------VVAAHGKDIN 498
+ L H D+
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558
SL++AP+ L +G+ D +A +W + + + TF GH+ I ++ F P T S D
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 559 TIKI--WSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
T ++ + + + SF G +++ D +W +
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 617 DKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
H++++ L V ATG D+ + +W+
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 116 bits (291), Expect = 4e-29
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 72 DKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131
+L S ++WD+ C +++ GH+ + P+G AT D ++D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 132 DGGFCTHYFKGHKGV--VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS 189
+ + ++S+ F LL +G DD VWD L L H +
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 190 RVTSMAITSDGSTLISAGRDKVVNLWD 216
RV+ + +T DG + + D + +W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 105 bits (261), Expect = 3e-25
Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 60/328 (18%)
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
AD L T P ++++ + L G+ +I + + G + + L A+ ++ ++D
Sbjct: 26 ADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDS 84
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443
+ + + + S V+ CA + + G DN +++ ++R + +
Sbjct: 85 YTTNKVHAIPLRSSWVMT---CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 444 VGAVAFSKKLQ--------------------------------------------NFLVS 459
+ VS
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201
Query: 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTAC 519
G+ D + K+W + H DIN++ PN + TGS D T
Sbjct: 202 GACDASAKLWDVR----------EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 520 V--WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 577
+ R + + GI SV FS ++++ D +W GH
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 578 TSSVLRASFLTRGAQIVSCGADGLVKLW 605
+ V G + + D +K+W
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.6 bits (205), Expect = 5e-18
Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%)
Query: 85 RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHK 144
+WD+ T + ++ GH G + ++ P L + D +WDV G C F GH+
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 145 GVVSSILFHPDTDKSLLFSGSDDATVRV--WDLLAKKCVATLDKHFSRVTSMAITSDGST 202
+++I F P+ + +GSDDAT R+ + + D +TS++ + G
Sbjct: 227 SDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 203 LISAGRDKVVNLWDLRDYSCKLTVPTYE-MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261
L++ D N+WD + ++ V + G
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM------------------- 325
Query: 262 SLEIHFITVGERGIVRMWN 280
T +++WN
Sbjct: 326 ----AVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.9 bits (203), Expect = 9e-18
Identities = 49/336 (14%), Positives = 97/336 (28%), Gaps = 40/336 (11%)
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSIL 151
++ R+ +GH M LL +A D K+++WD H V +
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 152 FHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKV 211
+ P + + G D +++L ++ + + + T D
Sbjct: 105 YAPSGN--YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR-------FLDDN 155
Query: 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVG 271
+ D +C L G L+ + F++
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR------------LFVSGA 203
Query: 272 ERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331
++W+ + A P+ + D L+
Sbjct: 204 CDASAKLWDVREG----------MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV 391
E I + F + + L + V+D + V
Sbjct: 254 DLRADQELMT-----YSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
LAGH V CL ++ + + TGS D+ +++W+
Sbjct: 308 LAGHDNRVSCL---GVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.8 bits (195), Expect = 1e-16
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 3/109 (2%)
Query: 25 LVVSSDGSFIACACGES---INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS 81
+ +G+ A ++ + + + + + IT+++ S +LL +
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 82 REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWD 130
VWD GHD + G +AT D + +W+
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 3e-24
Identities = 56/267 (20%), Positives = 99/267 (37%), Gaps = 25/267 (9%)
Query: 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM 441
+ VL GH + V+ TC G IV+GS DN++++W + + C+ GH
Sbjct: 2 RRGELKSPKVLKGHDDHVI---TCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501
G V + + T + + V +
Sbjct: 58 GGVWSSQMRDNIIIS------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
D+ + + C+ L V+ V + + V++ + D +K
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG-----------RRVVSGAYDFMVK 160
Query: 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED 621
+W +CL T +GHT+ V F G +VS D +++W V TG CI T H+
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218
Query: 622 KIWALAVGKKTEMFATGGSDALVNLWH 648
+ + K + +G +D+ V +W
Sbjct: 219 LTSGMEL--KDNILVSGNADSTVKIWD 243
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.3 bits (230), Expect = 4e-21
Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 23/353 (6%)
Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188
W KGH V + L + + SGSDD T++VW + KC+ TL H
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 189 SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248
V S + + + + + T +
Sbjct: 58 GGVWSSQMRDNIII-----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 308
S + + + + +G VR D + + D + + D +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVK--VWDPETETC 169
Query: 309 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368
T+ + + D ++ +++ + ++ + + ++
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDS 428
L V+++D+ + C L G ++ + + ++T S D +V+LWD
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDL 287
Query: 429 ESRCCV-----GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHT----IKVWSFD 472
++ + G G V + S + GS + T + V FD
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.2 bits (227), Expect = 8e-21
Identities = 56/346 (16%), Positives = 118/346 (34%), Gaps = 17/346 (4%)
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
W K L H V + + G+ ++S D + +W C T+ +
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT-- 57
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
V + S+ + IH + + M + + + +
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
+ + V V+V + + E L L G+
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL-HTLQGH 176
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
+ L+F G ++ + ++V+D+ + +C + L GH + +
Sbjct: 177 TNRVYSLQFDG---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDN 228
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
++V+G+ D++V++WD ++ C+ G AV + +NF+++ S D T+K+W
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL- 287
Query: 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518
E NL G + + + + GS++ T
Sbjct: 288 ---KTGEFIRNLVTLE-SGGSGGVVWRIRASNTKLVCAVGSRNGTE 329
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.7 bits (218), Expect = 1e-19
Identities = 39/194 (20%), Positives = 75/194 (38%), Gaps = 14/194 (7%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL 92
++ A + + D + T++G ++ + +L D + S IRVWD+ T
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG 207
Query: 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
C+ + GH +L + AD V +WD+ G C +G S++
Sbjct: 208 NCIHTLTGHQSLT--SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-T 264
Query: 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-----DKHFSRVTSMAITSDGSTLISAG 207
+K+ + + SDD TV++WDL + + L V + ++
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324
Query: 208 RDK----VVNLWDL 217
R+ + + D
Sbjct: 325 RNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (209), Expect = 2e-18
Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 58/316 (18%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD----------------------- 403
+ ++ ++V+ + C L GH+ V
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87
Query: 404 ------------TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK 451
+ + +V+GS+D ++R+WD E+ C+ V MG V AV +
Sbjct: 88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV---LMGHVAAVRCVQ 144
Query: 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511
+VSG+ D +KVW + + G ++ + V +
Sbjct: 145 YDGRRVVSGAYDFMVKVWDPE------------TETCLHTLQGHTNRVYSLQFDGIHVVS 192
Query: 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571
GS D + VW + + T GH+ +E ++++ + D T+KIW I G CL
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL 250
Query: 572 KTFEGHTSSVLRASFLT-RGAQIVSCGADGLVKLWTVRTGECIATY-----DKHEDKIWA 625
+T +G + L +++ DG VKLW ++TGE I +W
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310
Query: 626 LAVGKKTEMFATGGSD 641
+ + A G +
Sbjct: 311 IRASNTKLVCAVGSRN 326
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 9e-18
Identities = 51/239 (21%), Positives = 93/239 (38%), Gaps = 30/239 (12%)
Query: 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV 436
++V+D+ + C +VL GH V C+ +V+G+ D V++WD E+ C+
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYD-----GRRVVSGAYDFMVKVWDPETETCLHT 172
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496
GH V ++ F +VSGS D +I+VW + + G
Sbjct: 173 LQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVE------------TGNCIHTLTGHQ 217
Query: 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG-HKRGIWSVEFSPVDQVVITAS 555
+ + D+++ +G+ D T +W + + T +G +K VIT+S
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277
Query: 556 GDKTIKIWSISDGSCLKTF-----EGHTSSVLRASFLTRGAQIVSCGADGL----VKLW 605
D T+K+W + G ++ G V R +G + +
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 4e-13
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 521 WRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSS 580
WR +L S +GH + + +++ S D T+K+WS G CL+T GHT
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 581 VLRASF 586
V +
Sbjct: 60 VWSSQM 65
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 6e-07
Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 27 VSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREI 84
+ + + + ++ I D+ T++G + L + + +S +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 85 RVWDLSTLKCLRSWK-----GHDGPAIGMACHPSGGLLATAGAD----RKVLVWDVD 132
++WDL T + +R+ G G + + + A + K+LV D D
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 102 bits (253), Expect = 8e-24
Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 22/210 (10%)
Query: 417 GSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD 476
GS D +VR+WD + C + G ++ +GS D ++VW +
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSE---T 236
Query: 477 DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV------- 529
H + S+ + V +GS DR+ +W L + +
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 530 -----VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL-- 582
VT+ GHK + SV + D+ +++ S D+ + W G+ L +GH +SV+
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356
Query: 583 ----RASFLTRGAQIVSCGADGLVKLWTVR 608
+S + D ++W +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.9 bits (242), Expect = 2e-22
Identities = 61/311 (19%), Positives = 105/311 (33%), Gaps = 32/311 (10%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV-----LCLDTCALSSGKILIVTGSKDN 421
+YLA N + QVY +S S L+ S L + S I V S D
Sbjct: 75 EYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133
Query: 422 SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQP 481
+E R + V + ++ + V +
Sbjct: 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS-LDYFPSGDKLVSGSGDRTVRIWDL 192
Query: 482 MNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDL-------VSVVTFRG 534
+ ++ + + GS DR VW + G
Sbjct: 193 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 252
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS------------CLKTFEGHTSSVL 582
HK ++SV F+ Q V++ S D+++K+W++ + + C T+ GH VL
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 583 RASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV------GKKTEMFA 636
+ I+S D V W ++G + H + + ++AV G + +FA
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 637 TGGSDALVNLW 647
TG D +W
Sbjct: 373 TGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.2 bits (240), Expect = 3e-22
Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 27/175 (15%)
Query: 69 SPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-------GHDGPAIGMACHPSGGLLATAG 121
D K + + R +RVWD T + GH + G + +
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 122 ADRKVLVWDVDGG------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169
DR V +W++ C + GHK V S+ + + + SGS D
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRG 331
Query: 170 VRVWDLLAKKCVATLDKHFSRVTSMAITS------DGSTLISAGRDKVVNLWDLR 218
V WD + + L H + V S+A+ + + + + D +W +
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.1 bits (232), Expect = 3e-21
Identities = 54/373 (14%), Positives = 113/373 (30%), Gaps = 36/373 (9%)
Query: 117 LATAGADRKVLVWDVDGGFCT----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
+ ++++ H H VV + F D L +G + T +V
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG--EYLATGCNK-TTQV 87
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
+ + VA L + + +T S D + K E
Sbjct: 88 YRVSDGSLVARLSDDSAANKDP---ENLNTSSSPSSDLYIRSVCF-SPDGKFLATGAEDR 143
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
L + Q ++ VR+W+ + S
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
+ ++ G A S + V + L ++ ++ G+
Sbjct: 204 EDGVTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLVERLDSE--------NESGTGH 253
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL---------CLD 403
+ + + F + Q + + V++++L + + + +
Sbjct: 254 KDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 404 TCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ-----NFLV 458
+ A + I++GSKD V WD +S + + GH +V +VA + N
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 459 SGSSDHTIKVWSF 471
+GS D ++W +
Sbjct: 373 TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.8 bits (226), Expect = 2e-20
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 28 SSDGSFIACACGE-SINIVDLSNASIKSTIE-------GGSDTITALALSPDDKLLFSSG 79
DG +IA + ++ + D + ++ G D++ ++ + D + + S
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 80 HSREIRVWDLSTLK------------CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL 127
R +++W+L C ++ GH + +A + + + DR VL
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 128 VWDVDGGFCTHYFKGHKGVVSSILFHPDT----DKSLLFSGSDDATVRVWDL 175
WD G +GH+ V S+ + + ++ +GS D R+W
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (212), Expect = 1e-18
Identities = 67/335 (20%), Positives = 109/335 (32%), Gaps = 97/335 (28%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGS------------------DTITAL 66
+ S+DG ++A C ++ + +S+ S+ + + S I ++
Sbjct: 68 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127
Query: 67 ALSPDDKLLFSSGHSRE------------------------------------------I 84
SPD K L + R +
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187
Query: 85 RVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH------ 138
R+WDL T +C + DG G +A DR V VWD + GF
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247
Query: 139 -YFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK------------CVATLD 185
GHK V S++F D + SGS D +V++W+L C T
Sbjct: 248 ESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245
H V S+A T + ++S +D+ V WD + + L + + A+ GS+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWN 280
+ F T R+W
Sbjct: 366 PEYN----------------VFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.9 bits (203), Expect = 2e-17
Identities = 55/284 (19%), Positives = 93/284 (32%), Gaps = 30/284 (10%)
Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453
H+ +V C S+ + TG + + +++ V + A
Sbjct: 60 DHTSVVCC---VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115
Query: 454 QNFL-------VSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506
+ V S D + N K ++ H +DI SL P+
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
+ +GS DRT +W L +T + + S D+ +++W
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 567 DGSC-------LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGE-------- 611
G ++ GH SV F G +VS D VKLW ++
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295
Query: 612 ----CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
C TY H+D + ++A + E +G D V W +
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.3 bits (191), Expect = 6e-16
Identities = 53/261 (20%), Positives = 105/261 (40%), Gaps = 21/261 (8%)
Query: 414 IVTGSKDNSVRLWDSESRCCVGVG----TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
+ ++ L++ + V H V V FS +L +G + T +V+
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND-GEYLATGC-NKTTQVY 88
Query: 470 SFDGLS--------DDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521
S A + + + I S+ +P+ + TG++DR +W
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Query: 522 RLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581
+ + V+ +GH++ I+S+++ P +++ SGD+T++IW + G C T
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208
Query: 582 LRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-------HEDKIWALAVGKKTEM 634
A G I + D V++W TG + D H+D ++++ + +
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268
Query: 635 FATGGSDALVNLWHDSTAAER 655
+G D V LW+ A +
Sbjct: 269 VVSGSLDRSVKLWNLQNANNK 289
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 8/75 (10%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALA------LSPDDKLLFS 77
+ + + +I + + D + + ++G +++ ++A L P+ + +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 78 SGHSREIRVWDLSTL 92
+ R+W +
Sbjct: 374 GSGDCKARIWKYKKI 388
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.1 bits (237), Expect = 2e-22
Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 48/300 (16%)
Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444
S+ + + S+ V CL + IV+G +DN++++WD + C + TGH G+V
Sbjct: 4 SLQRIHCRSETSKGVYCLQ----YDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58
Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA- 503
+ + +++ S S+ V + + L+ + +
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 504 ---------------------------PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHK 536
+D + + S DRT VW V T GHK
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 537 RGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC 596
RGI +++ ++V++ S D TI++W I G+CL+ EGH L +IVS
Sbjct: 179 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRFDNKRIVSG 234
Query: 597 GADGLVKLWTVRTGE---------CIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
DG +K+W + C+ T +H +++ L + + D + +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 2e-13
Identities = 47/281 (16%), Positives = 85/281 (30%), Gaps = 74/281 (26%)
Query: 67 ALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP---------------------- 104
L DD+ + S I++WD +TL+C R GH G
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 105 ----------------AIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS 148
+ + G++ T DR + VWD+ +
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHR 138
Query: 149 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208
+ + D D + S S D T++VW+ + V TL+ H + + ++S
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSS 196
Query: 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK----------- 257
D + LWD+ +C + +E + +S IK
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFD----NKRIVSGAYDGKIKVWDLVAALDPR 252
Query: 258 -----KKRRSLEIH-------------FITVGERGIVRMWN 280
R+L H ++ + +W+
Sbjct: 253 APAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 8e-13
Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 36/261 (13%)
Query: 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW---------SFDGLSDDAEQPMNLKAKA 488
+ V + + +VSG D+TIK+W G + +
Sbjct: 12 SETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 489 VVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVE----- 543
+ + + V + L R + + V + +W +
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128
Query: 544 ---------------FSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLT 588
D+ +++ASGD+TIK+W+ S ++T GH + +
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-- 186
Query: 589 RGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
R +VS +D ++LW + G C+ + HE+ + + + +G D + +W
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWD 244
Query: 649 DSTAAEREEAFRKEEEAVLRG 669
A + L
Sbjct: 245 LVAALDPRAPAGTLCLRTLVE 265
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 2e-11
Identities = 40/299 (13%), Positives = 88/299 (29%), Gaps = 23/299 (7%)
Query: 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197
H V + + D + SG D T+++WD +C L H V +
Sbjct: 9 HCRSETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257
+I G + L + + + +
Sbjct: 65 ER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 258 KKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQ 317
+ + S D TI ++ ++ T+ +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI--KVWNTSTCEFVRTLNGHKR 179
Query: 318 GLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQ 377
G+ C+ +L++ + + + ++ L ++ + + + + +
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 378 VQVYDLSSM---------SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
++V+DL + C L HS V L IV+ S D+++ +WD
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ----FDEF-QIVSSSHDDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 96.9 bits (239), Expect = 2e-22
Identities = 53/377 (14%), Positives = 117/377 (31%), Gaps = 35/377 (9%)
Query: 99 KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDK 158
+GH I + T D+ + V+D GH G V ++ +
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--- 64
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAGRDKVVNLWD 216
+L SGS D TVRVWD+ C + H S R + + +++ RD +++W
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 217 LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
L S V P + + + + ++
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-------------------- 164
Query: 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336
+ + S D T+ + + +++ + +++
Sbjct: 165 -RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 223
Query: 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHS 396
+ +L + + + L +++L A ++ +D + S + +
Sbjct: 224 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283
Query: 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVAFSKKLQN 455
+ ++V+GS +N +++ S V + +V F K
Sbjct: 284 LSAIT----TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--T 336
Query: 456 FLVSGSSDHTIKVWSFD 472
+ + D + D
Sbjct: 337 LVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.3 bits (227), Expect = 1e-20
Identities = 58/376 (15%), Positives = 118/376 (31%), Gaps = 30/376 (7%)
Query: 53 KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHP 112
++T+ G ++ L +D + + + IRV+D K L GHDG +
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 113 SGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
GG+L + DR V VWD+ G CTH F+GH V + + + +GS D T+ V
Sbjct: 64 -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
W L + V + + + R + ++ + + + +Y+
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
V + ++ + + I + +Y +
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
+ K +AA + + +
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF----------------------SYH 280
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYV-LAGHSEIVLCLDTCALSSGK 411
+ + + + L + Q +Y+L S + + ++ + ++ GK
Sbjct: 281 HTNLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVN----FKGK 335
Query: 412 ILIVTGSKDNSVRLWD 427
L+ KD L
Sbjct: 336 TLVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.8 bits (192), Expect = 3e-16
Identities = 61/333 (18%), Positives = 114/333 (34%), Gaps = 54/333 (16%)
Query: 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
E+ Y+ + + ++VYD + L+GH V L + G IL+ +
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL---KYAHGGILVSGSTDRTVRV 78
Query: 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
+ C + K ++V+GS D+T+ VW S +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 485 KAKAVVAAHGKDINSLAVAPNDS-----------LVCTGSQDRTACVWRLPDLVSVVTFR 533
V ++ + V +V +GS D T VW + + +
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
Query: 534 GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE------------------ 575
GH I+S + + I+AS D TI+IW + +G + T +
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258
Query: 576 --------------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECI-A 614
H +++ + I+ G++ ++ +R+G+ + A
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318
Query: 615 TYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
K D+IW++ KT + A D L
Sbjct: 319 NILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.0 bits (164), Expect = 8e-13
Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 35/255 (13%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450
L GH V+ TC ++TG+ D +R++DS ++ + +GH G V A+ ++
Sbjct: 7 TLRGHMTSVI---TCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
LVSGS+D T++VW + + N +
Sbjct: 63 H--GGILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVRCLDIVEYKNIKYIV 112
Query: 511 TGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI------------------ 552
TGS+D T VW+LP SV + +
Sbjct: 113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172
Query: 553 ---TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
+ S D T+ +W ++ CL GHT + + + +S D +++W +
Sbjct: 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 232
Query: 610 GECIATYDKHEDKIW 624
GE + T H +
Sbjct: 233 GELMYTLQGHTALVG 247
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
T RGH + + D VIT + DK I+++ + L GH V + G
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 64
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEM--FATGGSDALVNLW 647
+VS D V++W ++ G C ++ H + L + + + TG D +++W
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 7e-12
Identities = 23/140 (16%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP 546
+ + H + + + D+ V TG+ D+ V+ + ++ GH G+W+++++
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 547 VDQVVITASGDKTIKIWSISD--GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604
++++ S D+T+++W I + + T L IV+ D + +
Sbjct: 64 -GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 605 WTVRTGECIATYDKHEDKIW 624
W + + + + D
Sbjct: 123 WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 8e-09
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 573 TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKT 632
T GH +SV+ +++ D +++++ + + H+ +WAL
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 633 EMFATGGSDALVNLWHDS 650
+ + +
Sbjct: 66 ILVSGSTDRTVRVWDIKK 83
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 10/75 (13%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV-VTFRGHKRGIWSVEFSPVDQVV 551
H +++++ + + ++ L V IWSV F +V
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-KTLV 338
Query: 552 ITASGDKTIKIWSIS 566
D + +
Sbjct: 339 AAVEKDGQSFLEILD 353
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 96.9 bits (239), Expect = 3e-22
Identities = 48/379 (12%), Positives = 102/379 (26%), Gaps = 31/379 (8%)
Query: 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPSGGL 116
+ I+ A + D + ++ E+ +++ S + K H+G G+ P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 117 LATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
+ T G DR VW + G + ++ ++ GS + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 177 AKK----CVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
+ C S V S+ + L + D ++ +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292
+ S + V V + +AD +S
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGS----RVAWVSHDSTVCLADADKKMAVATLAS 241
Query: 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGY 352
+ + L+ D +L+T +L RL
Sbjct: 242 ETLPLLAVTFITES-----------SLVAAGHDCFPVLFT---YDSAAGKLSFGGRLDVP 287
Query: 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412
+ N+++ + S+ + + + + H V + + K
Sbjct: 288 KQSSQR------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 413 -LIVTGSKDNSVRLWDSES 430
T D + +WD S
Sbjct: 342 SQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.8 bits (218), Expect = 2e-19
Identities = 51/396 (12%), Positives = 110/396 (27%), Gaps = 42/396 (10%)
Query: 147 VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK--CVATLDKHFSRVTSMAITSDGSTLI 204
+S ++ D ++ + ++ V +++ K V L +H +VT + D + ++
Sbjct: 10 ISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264
+ G D+ +W L+ + K T+ + A + F + I
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY---- 123
Query: 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA 324
N C + +K T+ AA +
Sbjct: 124 -----------FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172
Query: 325 DQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLS 384
+ K L + + F +A ++ V + D
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF-SANGSRVAWVSHDSTVCLADAD 231
Query: 385 SMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444
LA + +L + L+ G D L+ +S G +
Sbjct: 232 KKMAVATLASETLPLLA---VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVP 287
Query: 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504
+ ++ + S+ + + + H ++ ++V
Sbjct: 288 KQSSQR--------GLTARERFQNLDKKASSEGSAAA----GAGLDSLHKNSVSQISVLS 335
Query: 505 ND----SLVCTGSQDRTACVWRLPDLVSVVTFRGHK 536
S CT D +W + L S + K
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.6 bits (189), Expect = 7e-16
Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 33/283 (11%)
Query: 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT--GHMGAVGAVAFS 450
A HS +V + A + + I ++ V +++ V V H G V V ++
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
N +V+ +D VW+ + K V+ + + APN+
Sbjct: 61 PD-SNRIVTCGTDRNAYVWTL--------KGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 511 TGSQDRTACVWRLPDLVS----VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSIS 566
GS R + + + + S+++ P ++ S D +I+S
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 567 DGS------------------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR 608
+ V F G+++ D V L
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 609 TGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
+AT + A+ ++ + A G V +DS
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.2 bits (162), Expect = 2e-12
Identities = 43/342 (12%), Positives = 97/342 (28%), Gaps = 66/342 (19%)
Query: 367 QYLAVATNIEQVQVYDLSS--MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424
+A+ N +V +Y+ S + L H+ V + + IVT D +
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV---DWAPDSNRIVTCGTDRNAY 76
Query: 425 L----------------------------------------------WDSESRCCVGVGT 438
+ ++ E+ V
Sbjct: 77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136
Query: 439 GHMGAVGAVAFSKKLQNFLVSGSSDH-TIKVWSFDGLSDDAEQP--------MNLKAKAV 489
++ + L++ S +++S + +
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196
Query: 490 VAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549
++ ++ + + N S V S D T C+ ++V T + +V F +
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ES 255
Query: 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
++ A D +++ + +F G ++S A+ D
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-GSA 314
Query: 610 GECIATYDKHEDKIWALAV----GKKTEMFATGGSDALVNLW 647
H++ + ++V K F T G D +++W
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 8e-11
Identities = 35/267 (13%), Positives = 72/267 (26%), Gaps = 12/267 (4%)
Query: 25 LVVSSDGSFIACACGE-SINIVDLSNASIK--STIEGGSDTITALALSPDDKLLFSSGHS 81
+ D + IA ++I + S ++ + +T + +PD + + G
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 82 REIRVWDLSTL--KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG--GFCT 137
R VW L K + A + P+ A R + + + +
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197
+ + + LL +GS D R++ K+ + T
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV-----EERPAPTPWGSK 187
Query: 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIK 257
L+ + + + V VC + +
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247
Query: 258 KKRRSLEIHFITVGERGIVRMWNADSA 284
E + G ++ DSA
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSA 274
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 49/363 (13%), Positives = 90/363 (24%), Gaps = 38/363 (10%)
Query: 266 HFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325
V ++ + E+ + T P + ++ D
Sbjct: 21 QIAICPNNHEVHIYEKSG--------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE------EEQYLAVATNIEQVQ 379
+ ++T K +IL + +
Sbjct: 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 380 VYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI-------VTGSKDNSVRLWDSESRC 432
+ S VL+ L K I V +
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192
Query: 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492
+ + G V V FS + + S D T+ + D A
Sbjct: 193 LMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATLAS---------- 241
Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
+ ++ SLV G D ++ ++F G +
Sbjct: 242 ETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG----AQIVSCGADGLVKLWTVR 608
+ DK + H +SV + S L+ G +Q + G DG + +W VR
Sbjct: 301 FQNLDKKASSEGSAAAGA-GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Query: 609 TGE 611
+ E
Sbjct: 360 SLE 362
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.2 bits (227), Expect = 8e-21
Identities = 51/343 (14%), Positives = 94/343 (27%), Gaps = 21/343 (6%)
Query: 139 YFKGHKGVVSSILFHPDTDKSLL-FSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197
YF+G G + FH D + DA + + + TL+ H V ++ I+
Sbjct: 2 YFQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM------VEAVCAIPPGSAFDSFLSSY 251
+ + + G V +WD+ K V + + + +P G
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEA 118
Query: 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAAT 311
+ +I + A S S + + D
Sbjct: 119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178
Query: 312 VLPSNQGLLCVTADQQLLLYTTV----EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367
G C+ T V + + + +I L + E
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW 238
Query: 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
+ Y L H VL + V+ KDN + W
Sbjct: 239 L--AVGMESSNVEVLHVNKPDKYQLHLHESCVLS---LKFAYCGKWFVSTGKDNLLNAWR 293
Query: 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
+ + + +V + S ++V+GS D V+
Sbjct: 294 TPYGASIFQ-SKESSSVLSCDISVD-DKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.8 bits (187), Expect = 9e-16
Identities = 43/293 (14%), Positives = 83/293 (28%), Gaps = 47/293 (16%)
Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-----GTGHMGAVGAVA 448
H E+V + +S+ + TG V++WD + +
Sbjct: 49 NHGEVVCAV---TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104
Query: 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA---------------- 492
L+ G T+ +W + + + A A A
Sbjct: 105 LLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 493 ------------------HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG 534
H + + ++ + + + TG D T W +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHD 222
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594
I+S+ + P + + +++ ++ H S VL F G V
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFV 281
Query: 595 SCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
S G D L+ W G I K + + + + TG D ++
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.2 bits (183), Expect = 3e-15
Identities = 45/334 (13%), Positives = 92/334 (27%), Gaps = 14/334 (4%)
Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
PA G + ++ + H VV ++ T
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT--RH 65
Query: 161 LFSGSDDATVRVWDL-----LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLW 215
+++G V+VWD+ + + + S + DG TLI G +++W
Sbjct: 66 VYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 216 DLRDYSCKLT--VPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273
DL + ++ + + AI P S S + +
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333
G + ++ D T+ R L + L +
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244
Query: 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA 393
E K + +E + ++ + + + +
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Query: 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
S ++ +C +S IVTGS D +++
Sbjct: 305 ESSSVL----SCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (175), Expect = 3e-14
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 4/124 (3%)
Query: 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFH 153
+ P+G LA V V V+ H+ V S+ F
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFA 274
Query: 154 PDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
S D + W + K S V S I+ D +++ DK
Sbjct: 275 YCGK--WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKAT 331
Query: 214 LWDL 217
++++
Sbjct: 332 VYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (175), Expect = 3e-14
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 2/115 (1%)
Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
I SL P + G + V + H+ + S++F+ + +
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKWFV 281
Query: 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
+ D + W G+ + +SSVL IV+ D ++ V
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.8 bits (174), Expect = 5e-14
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATA 120
I +L P + L S + V ++ H+ + + G +
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283
Query: 121 GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL 176
G D + W G V S D + +GS D V++++
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV--DDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 47/296 (15%), Positives = 98/296 (33%), Gaps = 37/296 (12%)
Query: 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR-----SWKGHDGPAIGMACHPSG 114
+ + A+ +S + +++ G ++VWD+S D P G
Sbjct: 51 GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
L G + +WD+ + + D + FS D + VWD
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
L + V H + + I++DG+ L + G D V WDLR+ + +
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH------------------FITVGERGIV 276
+ P G + S N + + + F++ G+ ++
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 277 RMWNADS-ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331
W A +++ K S + + ++ ++ + D++ +Y
Sbjct: 290 NAWRTPYGASIFQSKESS------------SVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 3e-09
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 6/137 (4%)
Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
K S V + + +P + H + +V S + V
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY 67
Query: 553 TASGDKTIKIWSISDGSCLKT-----FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
T +K+W IS + + L G ++ G + +W +
Sbjct: 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126
Query: 608 RTGECIATYDKHEDKIW 624
+
Sbjct: 127 AAPTPRIKAELTSSAPA 143
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 4e-09
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 440 HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499
H V ++ F+ + VS D+ + W A + + S
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY-----------GASIFQSKESSSVLS 311
Query: 500 LAVAPNDSLVCTGSQDRTACVWRL 523
++ +D + TGS D+ A V+ +
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 4e-09
Identities = 41/301 (13%), Positives = 76/301 (25%), Gaps = 68/301 (22%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIE-----GGSDTITALALSPDDKLLFSSG 79
+ +S+ + + + D+S+ KS + + I + L PD L G
Sbjct: 57 VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Query: 80 HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHY 139
+ + +WDL+ + A S + D T
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176
Query: 140 FKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-------------- 185
+ + D + L++G D TVR WDL + + D
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 186 --------------------------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
H S V S+ G +S G+D ++N W
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296
Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279
+ V + + +T ++
Sbjct: 297 GASIFQSKESSSVLSCDISVDDK-----------------------YIVTGSGDKKATVY 333
Query: 280 N 280
Sbjct: 334 E 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 25 LVVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83
L + G + + +N + S ++ + +S DDK + + ++
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 84 IRVWDL 89
V+++
Sbjct: 330 ATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 36/341 (10%), Positives = 87/341 (25%), Gaps = 29/341 (8%)
Query: 59 GSDTITALALSPDDKLL-FSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLL 117
GS + ++ D ++ I + + + H + +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66
Query: 118 ATAGADRKVLVWDVDGGFC-----THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRV 172
T G V VWD+ + S P D L G + +T+ +
Sbjct: 67 YT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSI 123
Query: 173 WDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMV 232
WDL A + S A+ + + N+ ++ L
Sbjct: 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183
Query: 233 EAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIV----------RMWNAD 282
+ I + + T++ + +
Sbjct: 184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243
Query: 283 SACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME 342
+ E + +++ + + + + D L + T
Sbjct: 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-----PYGA 298
Query: 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
I + +L +++Y+ + ++ VY++
Sbjct: 299 SI---FQSKESSSVLSCDIS-VDDKYIVTGSGDKKATVYEV 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 82.9 bits (203), Expect = 9e-18
Identities = 30/316 (9%), Positives = 72/316 (22%), Gaps = 30/316 (9%)
Query: 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425
Y+ +++ V D M+ V+ + G+I T +K S+
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 426 WDSESRCCVGVGTGHMG-----AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQ 480
D + +G ++ A S + + S + A
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 481 PMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRG-- 538
++ + I LA A + S + +D LV + +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180
Query: 539 -------------------IWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT-FEGHT 578
+ + + G
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 579 SSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638
+ + +++ + + I +++ V G
Sbjct: 241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297
Query: 639 GSDALVNLWHDSTAAE 654
G+ + + T +
Sbjct: 298 GALGDLAAYDAETLEK 313
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 62.9 bits (151), Expect = 4e-11
Identities = 26/396 (6%), Positives = 72/396 (18%), Gaps = 68/396 (17%)
Query: 158 KSLLFSGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTL-ISAGRDKVVNL 214
+ + + + + V D + + G + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 215 WDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERG 274
DL + + S + +T+ I
Sbjct: 61 IDLVTGETLGRIDLS------TPEERVKSLFGAALSPDGKTL----------AIYESPVR 104
Query: 275 IVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334
+ ++ + ++ R T L + D ++
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA- 163
Query: 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394
G + + + +
Sbjct: 164 ----------------------------GTLVEDKPIQS---WEAETYAQPDVLAVWNQH 192
Query: 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454
S V+ + + D E+ M +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQ 514
+ + ++ + + + P S+ V+ + S V G
Sbjct: 253 TRAF--GAYNVLESFDLEKNASIKRVP-----------LPHSYYSVNVSTDGSTVWLGGA 299
Query: 515 DRTACVWRLPDLVSVVTFR----GHKRGIWSVEFSP 546
+ L F+
Sbjct: 300 LGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 34/388 (8%), Positives = 88/388 (22%), Gaps = 63/388 (16%)
Query: 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132
+ + ++ V D + + D
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD------------------------------ 31
Query: 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH----- 187
+ P + + + ++ DL+ + + +D
Sbjct: 32 ----------AGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80
Query: 188 FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSF 247
+ A++ DG TL + L ++ + E + A
Sbjct: 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITML 140
Query: 248 LSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGF 307
+ + + R L + G +V S DV + +S
Sbjct: 141 AWARDGSKLYGLGRDLHVMDPEAGT--LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM 198
Query: 308 TAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQ 367
+ T + + + + + + +
Sbjct: 199 ATPFYTARKDIDPADPTAYR----TGLLTMDLETGEMAMREVRIMDVFYFSTAVNP---A 251
Query: 368 YLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
++ +DL + + + +S+ + G + +D
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSV---NVSTDGSTVWLGGALGDLAAYD 307
Query: 428 SESRCCVGV----GTGHMGAVGAVAFSK 451
+E+ G G M F++
Sbjct: 308 AETLEKKGQVDLPGNASMSLASVRLFTR 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 61.7 bits (148), Expect = 9e-11
Identities = 27/188 (14%), Positives = 49/188 (26%), Gaps = 23/188 (12%)
Query: 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP------AIGMACHPSG 114
IT LA + D L+ R++ V D + +A
Sbjct: 135 RQITMLAWARDGSKLYG--LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGHK------GVVSSILFHPDTD--------KSL 160
D+D T Y G G ++ +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252
Query: 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220
+ + +DL + + S+ +++DGST+ G + +D
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311
Query: 221 SCKLTVPT 228
K V
Sbjct: 312 EKKGQVDL 319
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.4 bits (142), Expect = 5e-10
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 4/137 (2%)
Query: 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118
G D + + + DL T + A
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178
GA + +D++ S+ D S ++ G + +D
Sbjct: 256 -FGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETL 311
Query: 179 KCVATLDKHFSRVTSMA 195
+ +D + S+A
Sbjct: 312 EKKGQVDLPGNASMSLA 328
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.6 bits (132), Expect = 8e-09
Identities = 26/293 (8%), Positives = 68/293 (23%), Gaps = 39/293 (13%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGSD--TITALALSPDDKLLFSSG-HSREIRVWDL 89
+A A + + ++D ++ I T ++P ++ +++ S + DL
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 90 STLKCLRSWKGHDGPAIG-----MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--- 141
T + L A P G LA + ++ + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 142 --------GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC------------- 180
++ + + D K L +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 181 ------VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
D + DL + V
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243
Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287
+ +F + ++ ++ + I + + + D + ++
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVW 295
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 39/316 (12%), Positives = 78/316 (24%), Gaps = 27/316 (8%)
Query: 339 KKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC--SYVLAGHS 396
+KM + + + A E + DL + L+
Sbjct: 19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78
Query: 397 EIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-----------VGVGTGHMGAVG 445
E V L ALS + + L E + +
Sbjct: 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT 138
Query: 446 AVAFSKKLQNFLVSGSSDHTIKVWS------FDGLSDDAEQPMNLKAKAVVAA----HGK 495
+A+++ G H + + S +AE AV
Sbjct: 139 MLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM 198
Query: 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPD-LVSVVTFRGHKRGIWSVEFSPVDQVVITA 554
+ + L +++ R +S +P
Sbjct: 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA--F 256
Query: 555 SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614
++ + + + +K S + T G+ + GA G + + T E
Sbjct: 257 GAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315
Query: 615 TYDKHEDKIWALAVGK 630
D + +LA +
Sbjct: 316 QVDLPGNASMSLASVR 331
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 26 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
+ A + DL + + + ++ +S D ++ G ++
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA 304
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMA 109
+D TL+ ++ +A
Sbjct: 305 AYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 79.1 bits (193), Expect = 2e-16
Identities = 27/377 (7%), Positives = 92/377 (24%), Gaps = 34/377 (9%)
Query: 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
P G L + + + DV G + + + DT + + + +
Sbjct: 12 PLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69
Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEM 231
++D +++ V +M + + + + ++ E
Sbjct: 70 IYD-YRTGKAEKFEENLGNVFAMGVDRN------------GKFAVVANDRFEIMTVDLET 116
Query: 232 VEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291
+ A + + + L+ + +++ + ++ +
Sbjct: 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176
Query: 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVG 351
+ D ++ L ++ V + + +
Sbjct: 177 ENSHDYAPAFD-----------ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 352 YNEEILDLKFLGEEEQYLAVA---TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408
K + A ++ + ++ +L
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 409 SGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468
+ + +D ++R T + + S + ++ D I
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSAD-RKTVMVRKDDGKIYT 340
Query: 469 WSFDGLSDDAEQPMNLK 485
+ + D+ + +
Sbjct: 341 FPLEKPEDERTVETDKR 357
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 76.1 bits (185), Expect = 2e-15
Identities = 18/213 (8%), Positives = 43/213 (20%), Gaps = 16/213 (7%)
Query: 418 SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDD 477
++ ++D E R T + + L S L+
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSYRSLDPSPDRVVLNFS 213
Query: 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT-------ACVWRLPDLVSVV 530
E + N + P G D D ++
Sbjct: 214 FEVVSKPFV---IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 531 TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRG 590
A + + + +++
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADR 326
Query: 591 AQIVSCGADGLVKLWTVRTGECIATYDKHEDKI 623
++ DG + + + E T + + +
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 71.4 bits (173), Expect = 8e-14
Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 16/171 (9%)
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKC-------LRSWKGHDGPAIGMACHPSGGLLATA-- 120
D K L+ + D L G P
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247
Query: 121 ---GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLA 177
++ +VD G ++ + + + + +D+
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307
Query: 178 KKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
+K + + + +T + +++D T++ D + + L + TV T
Sbjct: 308 RK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 68.7 bits (166), Expect = 6e-13
Identities = 11/173 (6%), Positives = 38/173 (21%), Gaps = 7/173 (4%)
Query: 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
+ S + D + + S + + + D
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 473 GLSDDAEQPM---NLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 529
+ + + + + + + + + + +
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--- 308
Query: 530 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVL 582
K + + S + V+ D I + + +T E ++
Sbjct: 309 -KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 15/144 (10%), Positives = 34/144 (23%), Gaps = 13/144 (9%)
Query: 55 TIEGGSDTITALALSPDDKLLFSSGHSRE-------IRVWDLSTLKCLRSWKGHDGPAIG 107
I + L P + + D + + +
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDD 167
A +L +DV T K ++ + D + + DD
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSAD--RKTVMVRKDD 335
Query: 168 ATVRVWDLLAKKCVATLDKHFSRV 191
+ + L + T++ +
Sbjct: 336 GKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 31/204 (15%), Positives = 64/204 (31%), Gaps = 14/204 (6%)
Query: 29 SDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--REIRV 86
DG IA I D+S + E I + D K+ F G + +
Sbjct: 13 LDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLR--IRYVRRGGDTKVAFIHGTREGDFLGI 70
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
+D T ++ + G M +G A +++ D++ G T + + +
Sbjct: 71 YDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129
Query: 147 VSSILFHPDTDKSLLFS--------GSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198
++ ++ G + V+D+ +K A ++ + A +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH-DYAPAFDA 188
Query: 199 DGSTLISAGRDKVVNLWDLRDYSC 222
D L + D +
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNF 212
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 12/158 (7%), Positives = 28/158 (17%), Gaps = 18/158 (11%)
Query: 504 PNDSLVCTGSQDRTACVWRLPDLV-------SVVTFRGHKRGIWSVEFSPVDQVVITASG 556
+ + S L + P
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247
Query: 557 DKTIKIW-------SISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
D D + E A G++ + V+T
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307
Query: 610 GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ ++ + L + + D + +
Sbjct: 308 RKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 540 WSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD 599
++ +FSP+D +I I +S LK + G
Sbjct: 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 600 G--LVKLWTVRTGECIATYDKHEDKIWALA 627
+ ++ RTG+ ++++ ++A+
Sbjct: 64 EGDFLGIYDYRTGK-AEKFEENLGNVFAMG 92
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 28 SSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRV 86
++ A + + D+ + + +T L LS D K + +I
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
Query: 87 WDLSTLKCLRS 97
+ L + R+
Sbjct: 341 FPLEKPEDERT 351
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 76.1 bits (185), Expect = 1e-15
Identities = 44/292 (15%), Positives = 89/292 (30%), Gaps = 22/292 (7%)
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426
+ V + S++ + + HS S +G +VR+W
Sbjct: 30 DKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTV---AKTSPSGYYCASGDVHGNVRIW 85
Query: 427 --DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484
+ G V +++ + + G
Sbjct: 86 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG- 144
Query: 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF 544
+ + +GS D T ++ P TF H + + SV +
Sbjct: 145 -------QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRY 197
Query: 545 SPVDQVVITASGDKTIKIWSISDGSCLKT-------FEGHTSSVLRASFLTRGAQIVSCG 597
+P + + GD TI +++ DG+ H+ SV ++ G +I S
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257
Query: 598 ADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTEMFATGGSDALVNLWH 648
AD +K+W V T + T + L + + + ++ +N +
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 72.6 bits (176), Expect = 2e-14
Identities = 37/332 (11%), Positives = 84/332 (25%), Gaps = 40/332 (12%)
Query: 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL 203
+G + P DK + + +V + + +H + T + G
Sbjct: 17 RGTAVVLGNTPAGDK--IQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSL 263
S V +WD + +++ + G D S +++
Sbjct: 74 ASGDVHGNVRIWDTTQTTH--------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125
Query: 264 EIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVT 323
+ + + G A + F + T A
Sbjct: 126 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 185
Query: 324 ADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDL 383
+ +++ P+ + +D G E
Sbjct: 186 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGH 440
S + + + S D ++++W+ + VGT
Sbjct: 246 WSPDGTKIA-----------------------SASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 441 MGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472
+ ++K LVS S++ I + +
Sbjct: 283 EDQQLGIIWTK---QALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.6 bits (150), Expect = 4e-11
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHD-------GPAIGMACHPSGGLLATAGA 122
PD L S+G I +++ ++ G G+ P G +A+A A
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 123 DRKVLVWDVDGGFCTHYFKGHKGVVSSIL-FHPDTDKSLLFSGSDDATVRVWDL 175
D+ + +W+V + L L S S + + +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 5e-11
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIG-MACHPSGGLLATAGADRKVLV 128
PD + S+ + I++W+++TLK ++ + + L + A+ +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 129 WDVD 132
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.1 bits (146), Expect = 1e-10
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSS 149
+ L G A+ + P+G + V V T + H +
Sbjct: 7 ALFPSLPRTAR--GTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTV 63
Query: 150 ILFHPDTDKSLLFSGSDDATVRVW 173
P SG VR+W
Sbjct: 64 AKTSPSGY--YCASGDVHGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 6/107 (5%)
Query: 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA 109
S+ T G T L +P + + + + +L + H
Sbjct: 10 PSLPRTARG---TAVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAK 65
Query: 110 CHPSGGLLATAGADRKVLVWDVDGG--FCTHYFKGHKGVVSSILFHP 154
PSG A+ V +WD G V I +
Sbjct: 66 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 6/126 (4%)
Query: 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-----FCTHYFKGHKGVVSSILF 152
+ H + +P G L A+ G D +++++ G F K S
Sbjct: 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244
Query: 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTLISAGRDKV 211
D + + S S D T+++W++ K T+ + I L+S +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 212 VNLWDL 217
+N +
Sbjct: 305 INFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 5e-09
Identities = 38/310 (12%), Positives = 82/310 (26%), Gaps = 27/310 (8%)
Query: 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREI 84
L + G I G S+ V + + + S T SP S +
Sbjct: 23 LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82
Query: 85 RVW--DLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKG 142
R+W +T + GP ++ +A G R+ T
Sbjct: 83 RIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL 142
Query: 143 HKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR-VTSMAITSDGS 201
+ + D + ++ V S+ DGS
Sbjct: 143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 202
Query: 202 TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRR 261
S G D + L++ D + + +++
Sbjct: 203 LFASTGGDGTIVLYNGVDGTKTGVFEDDSL---------------KNVAHSGSVFGLTWS 247
Query: 262 SLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLC 321
+ +++WN + + + TI ++ ++ + Q L+
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEK------TIPV---GTRIEDQQLGIIWTKQALVS 298
Query: 322 VTADQQLLLY 331
++A+ +
Sbjct: 299 ISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Query: 531 TFRGHKRGIW-SVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589
+ RG + +P + +G ++ + + + + H+ A
Sbjct: 11 SLPRTARGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69
Query: 590 GAQIVSCGADGLVKLWTVRTGEC 612
G S G V++W
Sbjct: 70 GYYCASGDVHGNVRIWDTTQTTH 92
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558
L P + + + + L + H + SP +
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80
Query: 559 TIKIWSISDGSC 570
++IW + +
Sbjct: 81 NVRIWDTTQTTH 92
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 38/249 (15%), Positives = 71/249 (28%), Gaps = 15/249 (6%)
Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
G + SV S + T H S + SG +++W
Sbjct: 29 GDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIW 85
Query: 470 SFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV 529
+ V + KDI+ + + + V G + +
Sbjct: 86 DTTQ-----TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140
Query: 530 VTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589
+ +I+ S D T+ I+ TF HT V +
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200
Query: 590 GAQIVSCGADGLVKLWTVRTGECIATYDKHE-------DKIWALAVGKKTEMFATGGSDA 642
G+ S G DG + L+ G ++ ++ L A+ +D
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260
Query: 643 LVNLWHDST 651
+ +W+ +T
Sbjct: 261 TIKIWNVAT 269
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (99), Expect = 9e-05
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 30 DGSFIACACGE-SINIVDLSNASIKSTIEGGSD-TITALALSPDDKLLFSSGHSREIRVW 87
DG+ IA A + +I I +++ ++ TI G+ L + + L S + I
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Query: 88 DL 89
+
Sbjct: 309 NP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 2/88 (2%)
Query: 564 SISDGSCLKTFEGHTSSVLRA-SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622
S + + G +I C V V + Y +H +
Sbjct: 2 EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQ 60
Query: 623 IWALAVGKKTEMFATGGSDALVNLWHDS 650
A+G V +W +
Sbjct: 61 TTVAKTSPSGYYCASGDVHGNVRIWDTT 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.4 bits (186), Expect = 2e-15
Identities = 31/323 (9%), Positives = 72/323 (22%), Gaps = 65/323 (20%)
Query: 386 MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV---GTGHMG 442
M + + + + + K L++ S D S+ ++ + + +
Sbjct: 1 MQIVQIEQAPKDYISDI---KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH 57
Query: 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG----------------------------- 473
+ F + G+ I G
Sbjct: 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA 117
Query: 474 ----------LSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523
+ + + N S + G + +RL
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177
Query: 524 PDLVSVVTFR----GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGS---------- 569
P + + +S D + + D
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237
Query: 570 -----CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIW 624
V F R + + G+DG++ W ++T + I + K ++
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296
Query: 625 ALAVGKKTEMFATGGSDALVNLW 647
+ + + SD
Sbjct: 297 VVKIACSDNILCLATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.5 bits (168), Expect = 3e-13
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 22/159 (13%)
Query: 80 HSREIRVWDLSTLKCLRSWKGHDGPAIGM----ACHPSGGLLATAGADRKVLVWDVDGGF 135
++ +++ + L + G + A + D +V V D
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227
Query: 136 ---------------CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180
V+SI F P L++ D + W+L +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--FLYTAGSDGIISCWNLQTRKK 285
Query: 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
+ K + + + I + L A D D
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 3e-13
Identities = 45/331 (13%), Positives = 93/331 (28%), Gaps = 33/331 (9%)
Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
PS LL + D L +Y ++ K ++L + + Y +L F+ + + V T
Sbjct: 21 PSKSLLLITSWDGSLTVYK-FDIQAKNVDL---LQSLRYKHPLLCCNFIDNTDLQIYVGT 76
Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
++ DL L + + C K++ + V +
Sbjct: 77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136
Query: 434 VGVG---TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVV 490
+ V + + + + L+ G ++ ++ + DD
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE------S 190
Query: 491 AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT---------------FRGH 535
+ + + S D V D
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250
Query: 536 KRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVS 595
+ S+EFSP + + TA D I W++ +K F + +
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIACSDNILCL 309
Query: 596 CGADGLVKLWTVRTGECIATYDKHEDKIWAL 626
+D K T + + I+ +
Sbjct: 310 ATSDDTFKTN----AAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.0 bits (164), Expect = 8e-13
Identities = 37/343 (10%), Positives = 88/343 (25%), Gaps = 42/343 (12%)
Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY----EMVEA 234
+ V ++ + I S L+ D + ++ + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV 294
I + + S +T E + +S
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 295 TI-------SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347
+ ++ + + + + L+ + L L +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 348 RLV------GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-------- 393
G +I D+ L +E++ A ++ +V V Y +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 394 ----GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449
+ + +++ S + T D + W+ ++R + V
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKI 300
Query: 450 SKKLQNFLVSGSSDHTIKVWSFDGLS-----------DDAEQP 481
+ N L +SD T K + + D E P
Sbjct: 301 ACS-DNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 9/180 (5%)
Query: 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC---LRSWKGHDGPAIGMACH 111
+ D I+ + + P LL + + V+ L + P +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 112 PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
+ L G + ++ G + + I L + S D +
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 172 VWDLLAKKCVATLDKHFSRV------TSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225
V D K+ + + ++ S LI + V + L
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 39/348 (11%), Positives = 95/348 (27%), Gaps = 40/348 (11%)
Query: 92 LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVS 148
++ ++ + + PS LL D + V+ D +K +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60
Query: 149 SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208
F +TD + ++V + + A + + LI+A
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFI 268
D ++ + D R+Y + ++ + + I
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNS----------------NNTKVKNKIFTMDTNSSRLI 164
Query: 269 TVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328
V+ + D E + A + +G C + D ++
Sbjct: 165 VGMNNSQVQWFR------LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218
Query: 329 LLY--------TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380
+ L+ + + ++F ++L A + +
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRHKFLYTAGSDGIISC 277
Query: 381 YDLSSMSCSYVLAGHSEIVLCLDTCALS-SGKILIVTGSKDNSVRLWD 427
++L + A +E ++ S IL + D++ +
Sbjct: 278 WNLQTRKKIKNFAKFNEDS----VVKIACSDNIL-CLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 6e-10
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 22/141 (15%)
Query: 69 SPDDKLLFSSGHSREIRVWDLST---------------LKCLRSWKGHDGPAIGMACHPS 113
+ + S + V + P + P
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
L TAG+D + W++ F S + + +L + D T +
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDN--ILCLATSDDTFKTN 319
Query: 174 DLLAKKCVATLDKHFSRVTSM 194
T++ + S + +
Sbjct: 320 ----AAIDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (135), Expect = 3e-09
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 57 EGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGL 116
+ + ++ SP K L+++G I W+L T K ++++ + ++ + S +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIACSDNI 306
Query: 117 LATAGADRKVLVWDV 131
L A +D
Sbjct: 307 LCLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 5e-06
Identities = 5/82 (6%), Positives = 23/82 (28%), Gaps = 3/82 (3%)
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY---DKHEDKIWAL 626
++ + + + + ++ DG + ++ +++ +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 627 AVGKKTEMFATGGSDALVNLWH 648
T++ G+ L
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKV 84
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 75.5 bits (184), Expect = 2e-15
Identities = 35/359 (9%), Positives = 82/359 (22%), Gaps = 27/359 (7%)
Query: 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGS 165
G A + + V DV K + + PD +++ +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNN 59
Query: 166 DDATVRVWDLLAKKCVATLD------KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219
+ DL K + + + S AI+ DG + +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFD---SFLSSYNQQTIKKKRRSLEIHFITVGERGIV 276
+L V + + ++ + ++ T +
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179
Query: 277 RMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEV 336
+ N + ++
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY-----GYLS 234
Query: 337 PEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC-SYVLAGH 395
+ K ++ E ++ + N ++ YDL H
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAANLDH 292
Query: 396 SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGHMGAVGAVAFSK 451
+ C+ A + G N + +++ ++ V + G M F +
Sbjct: 293 T--YYCV---AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 69.0 bits (167), Expect = 4e-13
Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 26/241 (10%)
Query: 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI-GMACHPSGG-LLATAGAD 123
AL + + + + + V D+++ +S D P
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 124 RKVLVWDVDGGFCTHYF------KGHKGVVSSILFHP----------DTDKSLLFSGSDD 167
+ D+D T + + S P T +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 168 ATVRVWDLLAKKCVATLDKHFS--RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLT 225
+ V+ + +V M DGS ++ +++ + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK---YTVA 178
Query: 226 VPTYEMVEAVCAIPPGSAFDSFLSSYNQQT---IKKKRRSLEIHFITVGERGIVRMWNAD 282
+P + P F S ++ + + + + T +
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
Query: 283 S 283
+
Sbjct: 239 T 239
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 66.3 bits (160), Expect = 3e-12
Identities = 18/211 (8%), Positives = 47/211 (22%), Gaps = 27/211 (12%)
Query: 42 INIVDLSNASIKSTIEGGS--DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK 99
+ + ++ + + + + D L + ++ V L
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 100 GHDGPAIGMACH----------------------PSGGLLATAGADRKVLVWDVDGGFCT 137
+ ATA L D+ G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 138 HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197
+ D + ++ + + +DL +K + + +A
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAKYDLKQRKLIKAAN-LDHTYYCVAFD 300
Query: 198 SDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228
G L G + +++ +
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 56.3 bits (134), Expect = 5e-09
Identities = 36/398 (9%), Positives = 91/398 (22%), Gaps = 55/398 (13%)
Query: 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253
A+ + +I +++ D+ + V C +P + + + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDT----------VYKSCVMPDKFGPGTAMMAPDN 51
Query: 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVL 313
+T ++ G + + D+ +S + R + +
Sbjct: 52 RTA----------YVLNNHYGDIYGIDLDTCKNTFH----ANLSSVPGEVGRSMYSFAIS 97
Query: 314 PSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373
P + T + L V ++E+ + E ++ Q +
Sbjct: 98 PDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTAD----GLEAKPVRTFPMPRQVYLMRA 152
Query: 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433
+ + V G + L L S + + W +S
Sbjct: 153 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK-------GYSAPDVLYFWPHQSPRH 205
Query: 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
+ + + A
Sbjct: 206 EFSMLYTIARFKDDKQD------PATADLLYGYLSVDLK---------TGKTHTQEFADL 250
Query: 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVIT 553
+ + +P D G + + L + + V F +
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYL 308
Query: 554 ASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTR 589
+ +++ +K + G S R
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.9 bits (133), Expect = 7e-09
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 26 VVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIR 85
+ S + DL + T +A L+ G ++
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLA 316
Query: 86 VWDLSTLKCLRSWKGHDGP 104
V++ TL+ +++ K G
Sbjct: 317 VFNPDTLEKVKNIKLPGGD 335
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 16/224 (7%), Positives = 44/224 (19%), Gaps = 16/224 (7%)
Query: 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTI- 466
+ ++ K + ++ + L D
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168
Query: 467 ------KVWSFDGLSDDAEQPMNLKAKAVVAAHGKD------INSLAVAPNDSLVCTGSQ 514
+ + + + + T
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 515 DRTACVWRLP-DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKT 573
L F ++ SP D I + + + + +K
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA 287
Query: 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYD 617
+ +F +G ++ G + ++ T E +
Sbjct: 288 AN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.7 bits (117), Expect = 7e-07
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 4/114 (3%)
Query: 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGH 101
VDL + + L G + +DL K +++
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-L 290
Query: 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK---GHKGVVSSILF 152
D +A G L G + V++ D K G + +F
Sbjct: 291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVF 344
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 73.5 bits (178), Expect = 9e-15
Identities = 42/296 (14%), Positives = 87/296 (29%), Gaps = 6/296 (2%)
Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVC-A 237
H +T+++ ++DG TL SA + +N WD+ P
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 238 IPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTIS 297
+ + + + ++ + + A SA ++
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 298 FEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEIL 357
K + S L + + K +S+ + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 358 DLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTG 417
+L +V Y +++ + + + S + + TG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 418 SKDNSVRLWDSES---RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
S DNSV +W+ + G M +V +V + + +VS D IK W+
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 70.8 bits (171), Expect = 7e-14
Identities = 29/299 (9%), Positives = 88/299 (29%), Gaps = 9/299 (3%)
Query: 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL-DKHFSRVT 192
G GH ++++ D LFS + + WD+ D H + +T
Sbjct: 2 GSIDQVRYGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
Query: 193 SMAITSDGSTLISAGRDKVVNLWD----LRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248
+ TS G + D + + + + + + + A +
Sbjct: 60 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119
Query: 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFT 308
+ K + + + + A + ++ + +
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179
Query: 309 AATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368
A + EL + + ++ + + + +
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239
Query: 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
+ + V V++++ S ++ + + +++ + IV+ +D++++ W+
Sbjct: 240 ATGSLD-NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.9 bits (161), Expect = 1e-12
Identities = 33/298 (11%), Positives = 71/298 (23%), Gaps = 42/298 (14%)
Query: 387 SCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVG 445
S V GH++ + L + S+ + + + + WD + V H +
Sbjct: 3 SIDQVRYGHNKAITAL---SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
Query: 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
+ + + L + S D +KV G D+ + + K + +
Sbjct: 60 GIKTTS--KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117
Query: 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565
+ S V K+ + V + + +
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177
Query: 566 SDGSCLKTFEGHTSSVLRASFLTRGAQI-------------------------------- 593
+ + L A+ +R
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237
Query: 594 --VSCGADGLVKLWTVRTGEC--IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLW 647
+ D V +W + I H + + G D+ + W
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.7 bits (150), Expect = 3e-11
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 568 GSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATY-DKHEDKIWAL 626
GS + GH ++ S G + S A+G + W + TG + D H I +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 627 AVGKKTEMFATGGSDALVNLWHDST 651
K ++F D L + +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGS 86
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.8 bits (145), Expect = 1e-10
Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 41/299 (13%)
Query: 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLD 403
+ + G+N+ I L + + L A + +D+S+ + V H+ ++ +
Sbjct: 4 IDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 404 TCALSSGKILIVTGSKDNSVRLWD---SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSG 460
T K + T S D+ +++ S V +A S + +
Sbjct: 63 TT----SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118
Query: 461 SS---------------DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN 505
+ + V G ++ + +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178
Query: 506 DSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWS---------------VEFSPVDQV 550
+ + + + D V V +SP +
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238
Query: 551 VITASGDKTIKIWSISDGSC--LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607
+ T S D ++ +W+++ S + H S + + IVS G D +K W V
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.0 bits (143), Expect = 3e-10
Identities = 29/123 (23%), Positives = 42/123 (34%)
Query: 51 SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMAC 110
SI G + ITAL+ S D K LFS+ I WD+ST R + I
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 111 HPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170
S G L T D + V G + S L + + + +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 171 RVW 173
++
Sbjct: 123 AIY 125
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.0 bits (130), Expect = 1e-08
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 127 LVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL--LAKKCVATL 184
+ H D L +GS D +V VW++ + +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 185 DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDL 217
H + I + +T++SAG+D + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 1e-08
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC---THYFKGHKGVVSSI 150
SW H ++ P LAT D V+VW+++ V+S+
Sbjct: 216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV 275
Query: 151 LFHPDTDKSLLFSGSDDATVRVWDL 175
++ + + + S D+ ++ W++
Sbjct: 276 IWLNE---TTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 504 PNDSLVCTGSQDRTACVWRL--PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIK 561
P++ + TGS D + VW + P ++ H + + +++A D IK
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 562 IWSIS 566
W++
Sbjct: 294 FWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 70 PDDKLLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL 127
PD+ L + + VW+++ + H ++ + + +AG D +
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293
Query: 128 VWDV 131
W+V
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 2e-05
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS 513
L +GS D+++ VW+ + SD + AH + + N++ + +
Sbjct: 236 NVRLATGSLDNSVIVWNMNKPSD--------HPIIIKGAHAMSSVNSVIWLNETTIVSAG 287
Query: 514 QDRTACVWRLP 524
QD W +P
Sbjct: 288 QDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.002
Identities = 7/60 (11%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 33 FIACACGESINIVDLSNASIKSTI--EGGSDTITALALSPDDKLLFSSGHSREIRVWDLS 90
+ S+ + +++ S I + + + ++ + S+G I+ W++
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.1 bits (180), Expect = 1e-14
Identities = 44/418 (10%), Positives = 101/418 (24%), Gaps = 64/418 (15%)
Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSR----- 190
+ K H + S+ S S D ++VWD DK +S
Sbjct: 6 TANAGKAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61
Query: 191 --------VTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGS 242
+ + + + + + V ++ + S
Sbjct: 62 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121
Query: 243 AFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS------ACLYEQKSSDVTI 296
+ + N + + + +G +W + +
Sbjct: 122 FWALKWGASNDRLLSH-------RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174
Query: 297 SFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEI 356
A +V S +GL+ + + + + ++ + I
Sbjct: 175 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234
Query: 357 LDLKFLGEEEQYLAVATN--IEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL- 413
+KF + + + +Y+ L+ + S ++
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 414 ---------IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDH 464
+ + D +R WD +++ + H + G S
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA---VDEHGDSLA 351
Query: 465 TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522
V+ V K S A + +C DR+ +R
Sbjct: 352 EPGVFD-------------------VKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.2 bits (175), Expect = 5e-14
Identities = 38/383 (9%), Positives = 106/383 (27%), Gaps = 64/383 (16%)
Query: 312 VLPSNQGLLCVTADQQLLLY-----TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366
V N + + D L ++ +K + K + + + + ++ E
Sbjct: 20 VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79
Query: 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVL------------CLDTCALSSGKILI 414
+A + + Y ++ + + +L +
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 415 VTGSKDNSVRLWD------------------SESRCCVGVGTGHMGAVGAVAFSKKLQNF 456
V + +W E + V +V S++
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GL 197
Query: 457 LVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDR 516
+ +G ++ T+++ N +++ + + I S+ +P SL+
Sbjct: 198 IATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253
Query: 517 TACVWRLPD----------------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560
+ L + + + H + S+ F+ + + +A D +
Sbjct: 254 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313
Query: 561 KIWSISDGSCLKTFEGHTSSVLRA----SFLTRGAQIVSCGADGLVKLWTVRTGECIATY 616
+ W + + T H + + G + G+ + ++ G
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE---PGVFDVKFLKKGWRSGMG 370
Query: 617 DKHEDKIWALAVGKKTEMFATGG 639
+ + + + + F G
Sbjct: 371 ADLNESLCCVCLDRSIRWFREAG 393
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 8e-12
Identities = 25/213 (11%), Positives = 50/213 (23%), Gaps = 47/213 (22%)
Query: 54 STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-KGHDGPAIGMACH- 111
+ + I +++ S ++VWD L K + H
Sbjct: 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 112 -----------PSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
L+AT +L + + T K + + +L
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 161 -------------LFSGSDDATVRVWDLLAKK------------------CVATLDKHFS 189
L + T +W V +
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 190 RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSC 222
TS+ I+ G + + + V + +L
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQISELSTLRP 217
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 6e-07
Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 21/133 (15%)
Query: 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGV 146
+ + H + ++ + SG L +AG D K+ WDV H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333
Query: 147 VS----SILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST 202
+ + G A V+D V L K S +
Sbjct: 334 IEIEEDILAVDEH--------GDSLAEPGVFD------VKFLKK---GWRSGMGADLNES 376
Query: 203 LISAGRDKVVNLW 215
L D+ + +
Sbjct: 377 LCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 6e-06
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 60 SDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGP----AIGMACHPSGG 115
S + +L+ + + L S+G ++R WD+ T + + + H +A G
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 116 LLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
LA G V+DV K K S + + L D ++R +
Sbjct: 349 SLAEPG------VFDV---------KFLKKGWRSGMGADLNE--SLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 38/316 (12%), Positives = 81/316 (25%), Gaps = 66/316 (20%)
Query: 28 SSDGSFIACAC-GESINIVDLSNASIKSTIEGGSD----------TITALALSPDD---- 72
+ + +A + ++ + + AL +
Sbjct: 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 135
Query: 73 -KLLFSSGHSREIRVWDLSTLK------------------CLRSWKGHDGPAIGMACHPS 113
L ++ +W + S A +
Sbjct: 136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER 195
Query: 114 GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF----HPDTDKSLLFSGSDDAT 169
G L+AT + V + ++ + F+ ++++ SLL D +
Sbjct: 196 G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS 254
Query: 170 VRVW----------------DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213
+ + H S V S++ G TL SAG D +
Sbjct: 255 FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 314
Query: 214 LWDLRDYSCKLTV-----PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIH-- 266
WD++ T+ + + G + ++ + +KK RS
Sbjct: 315 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE-PGVFDVKFLKKGWRSGMGADL 373
Query: 267 ---FITVGERGIVRMW 279
V +R +
Sbjct: 374 NESLCCVCLDRSIRWF 389
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.6 bits (176), Expect = 2e-14
Identities = 38/337 (11%), Positives = 86/337 (25%), Gaps = 42/337 (12%)
Query: 103 GPAIGMACHPSGGLLATAGADRKVL-VWDVDGGF--CTHYFKGHKG-VVSSILFHPDTDK 158
++ P+ +A + D F GH VV+++ F P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATL--------DKHFSRVTSMAITSDGSTLISAGRDK 210
L SG + V VW K ++ ++ ++ +G L G +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270
+ S + + A + + +
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ--------- 188
Query: 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+ ++ K E F + + L
Sbjct: 189 -----GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243
Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390
+ P + LS + Q A ++V+D+++ C
Sbjct: 244 IEDDQEPVQGGIFALSWL----------------DSQKFATVGADATIRVWDVTTSKCVQ 287
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
+ + +++G I++ S D ++ ++
Sbjct: 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 7e-12
Identities = 36/281 (12%), Positives = 77/281 (27%), Gaps = 24/281 (8%)
Query: 384 SSMSCSYVLAGH-SEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCV-------- 434
S + GH S +V + + + + +G + V +W
Sbjct: 50 SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVK 108
Query: 435 GVGTGHMGAVGAVAFSKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493
G + +++ + + +V D+ S+D + E + +
Sbjct: 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168
Query: 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP----VDQ 549
V S T + VEFSP
Sbjct: 169 QSRPMRSMT------VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222
Query: 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRT 609
V + S ++ + + A + + GAD +++W V T
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282
Query: 610 GECIATYDKHEDKIWALAVG---KKTEMFATGGSDALVNLW 647
+C+ + + ++ VG + D +N +
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.5 bits (147), Expect = 8e-11
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 18/165 (10%)
Query: 48 SNASIKSTIEGGSDT----ITALALSPD-DKLLFSSGHSREIRVWDLST--LKCLRSWKG 100
S+ S+K I T T L+ P + + + G S +R D + + + G
Sbjct: 1 SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60
Query: 101 HDGPAI-GMACHP--SGGLLATAGADRKVLVWDVDGGFCTHYF--------KGHKGVVSS 149
H + + P L + KV+VW ++ + G +S
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194
I + + + + D + + + H R+ +
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 4e-10
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVS--SIL 151
+ + I AT GAD + VWDV C + K + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
Query: 152 FHPDTDKSLLFSGSDDATVRVWDL 175
+ + S S D T+ ++L
Sbjct: 303 VVATGNG-RIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 4e-09
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHF 188
G F + + V I D + DAT+RVWD+ KCV
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293
Query: 189 SRVTSMAIT---SDGSTLISAGRDKVVNLWDL 217
++ + + + +IS D +N ++L
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.2 bits (128), Expect = 2e-08
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 70 PDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMA---CHPSGGLLATAGADRKV 126
D + + G IRVWD++T KC++ W G + + D +
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 127 LVWDV 131
+++
Sbjct: 321 NFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 7e-07
Identities = 46/284 (16%), Positives = 76/284 (26%), Gaps = 18/284 (6%)
Query: 384 SSMSCSYVLAGHSEIVLCLDTCALSS--GKILIVTGSKDNSVRLWDSESRC--CVGVGTG 439
SS+S ++ T + K VR D V TG
Sbjct: 1 SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60
Query: 440 HMG-AVGAVAFSKKL-QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDI 497
H V V FS +L SG + VW + D + + K+ I
Sbjct: 61 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPI 118
Query: 498 NSLAVAPNDS--LVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS 555
+ ++ V +D S+ GH + I + +
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178
Query: 556 GDKTIK----IWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW----TV 607
GD + +T S V F + V +
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238
Query: 608 RTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDST 651
+ I + ++ FAT G+DA + +W +T
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 9e-06
Identities = 56/346 (16%), Positives = 106/346 (30%), Gaps = 39/346 (11%)
Query: 2 ASLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIK----STIE 57
+S+ LK+ +P Q+ + L + IA CG+S + L + K
Sbjct: 1 SSISLKEIIPPQPSTQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT 59
Query: 58 G-GSDTITALALSP--DDKLLFSSGHSREIRVWDLST--------LKCLRSWKGHDGPAI 106
G GS +T + SP + L S S ++ VW + + ++ GP
Sbjct: 60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 119
Query: 107 GMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166
++ G L G R + + H + +
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
Query: 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTV 226
D V+ + D+ + S + S V + + + K
Sbjct: 180 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239
Query: 227 PTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286
+ + + G S+L S F TVG +R+W+
Sbjct: 240 FLKYIEDDQEPVQGGIFALSWLDSQ--------------KFATVGADATIRVWDV----- 280
Query: 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQG-LLCVTADQQLLLY 331
+S + +D + G V+ + G ++ ++ D L Y
Sbjct: 281 ---TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.002
Identities = 29/267 (10%), Positives = 66/267 (24%), Gaps = 27/267 (10%)
Query: 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS 81
L + + + ++KS + + I+ ++ + + L G
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 82 RE--IRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVL----VWDVDGGF 135
R+ + L GH S + + D +
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196
Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR--VWDLLAKKCVATLDKHFSRVTS 193
V + F PD+ + ++ GSD K + +
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256
Query: 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253
D + G D + +WD+ C + + +++ N
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV-------GVVATGNG 309
Query: 254 QTIKKKRRSLEIHFITVGERGIVRMWN 280
I++ G + +
Sbjct: 310 ------------RIISLSLDGTLNFYE 324
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.7 bits (163), Expect = 7e-13
Identities = 33/293 (11%), Positives = 82/293 (27%), Gaps = 12/293 (4%)
Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238
+ + T+ H +T++ + + LIS D + W + + +
Sbjct: 4 EVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59
Query: 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298
++D L + + G ++ + ++
Sbjct: 60 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119
Query: 299 EMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD 358
S + V + + + L + ++ + I
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179
Query: 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGS 418
+G+ Y +++ +V + + S + L+ TGS
Sbjct: 180 GDVMGKILLY-----DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234
Query: 419 KDNSVRLWD-SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
D ++ ++ + H V + + + LVS +D IK W+
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.2 bits (154), Expect = 9e-12
Identities = 37/296 (12%), Positives = 82/296 (27%), Gaps = 19/296 (6%)
Query: 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMA 195
GH ++++ +P L SGS D + W + H + + S+
Sbjct: 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSS-----SSMHQDHSNLIVSLD 53
Query: 196 ITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255
+ + D + + + A+ L S+
Sbjct: 54 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113
Query: 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPS 315
IK R + +++ + + + + S + + ++ PS
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173
Query: 316 NQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILD---LKFLGEEEQYLAVA 372
+ ++LLY K + EE +A
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233
Query: 373 TNIEQVQVYDLSS-MSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427
+ + +Y + M L H + V L + +V+ D ++ W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNL--LWETPST--LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.1 bits (151), Expect = 2e-11
Identities = 31/291 (10%), Positives = 76/291 (26%), Gaps = 46/291 (15%)
Query: 391 VLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450
++GH++ + L L ++GS D + W S S + H + ++ S
Sbjct: 8 TISGHNKGITALTVNPL-------ISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55
Query: 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510
K + +S + + + D + + ++
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 511 TGSQDRTACVWRLPD---------------------LVSVVTFRGHKRGIWSVEFSP--- 546
+ + L VS + + SP
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 547 --------VDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA 598
++ + S + + + +
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 599 DGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648
D + +++V+ + I + H+D + L + G+DA + W+
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.5 bits (147), Expect = 6e-11
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 2/141 (1%)
Query: 426 WDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485
S+ + T ++ S + +
Sbjct: 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206
Query: 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEF 544
++ + + + LV TGS D ++ + + ++ HK G+ ++ +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266
Query: 545 SPVDQVVITASGDKTIKIWSI 565
++++ D IK W++
Sbjct: 267 ET-PSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.4 bits (144), Expect = 1e-10
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 94 CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV-DGGFCTHYFKGHKGVVSSILF 152
+ + L+AT D + ++ V HK V+++L+
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266
Query: 153 HPDTDKSLLFSGSDDATVRVWDLL 176
S L S DA ++ W+++
Sbjct: 267 ETP---STLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.2 bits (141), Expect = 4e-10
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 535 HKRGIWSVEFSPVDQVVITASGDKTIKIWSISD-GSCLKTFEGHTSSVLRASFLTRGAQI 593
+ E + +V T S D I I+S+ +K H V + T +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272
Query: 594 VSCGADGLVKLWTV 607
VS GAD +K W V
Sbjct: 273 VSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 1e-09
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLL-AKKCVATLDKH 187
+ + ++ L+ +GS D + ++ + K + L+ H
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257
Query: 188 FSRVTSMAITSDGSTLISAGRDKVVNLWD 216
V ++ + TL+S+G D + W+
Sbjct: 258 KDGVNNLLWETPS-TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
+ L++ GH+ + +P L + D +++ W H ++ S+
Sbjct: 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54
Query: 153 HPDT 156
Sbjct: 55 SKAQ 58
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 1e-05
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 570 CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVG 629
LKT GH + + ++S DG + W+ + H + I +L
Sbjct: 5 VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55
Query: 630 KKTEMF 635
K E
Sbjct: 56 KAQEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 2e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 55 TIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG 114
TI G + ITAL ++P L S + I W S++ H + + +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQ 58
Query: 115 GLLATAGADRKVLVWDVDGGFCTHYFKGH 143
+ + D + F +
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVAS 87
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 67.9 bits (164), Expect = 9e-13
Identities = 48/422 (11%), Positives = 87/422 (20%), Gaps = 103/422 (24%)
Query: 61 DTITALALSPDDKLLFSS-----GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG 115
+ A +PD + ++ + + V D + + G P G
Sbjct: 2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS 59
Query: 116 LLATAGA----------DRKVLVWDVDGGFCTHYFKGHKGVVS-------SILFHPDTDK 158
+A A V V+D T + PD
Sbjct: 60 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119
Query: 159 SLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGSTLISAG-RDK 210
L + S V V DL K LD + T DGS A +
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179
Query: 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITV 270
+ + + +
Sbjct: 180 TPEITHTEVFHPEDEFL----INHPAYSQKA----------------------------- 206
Query: 271 GERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLL 330
+V + S D ++ A P + +
Sbjct: 207 --GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY 264
Query: 331 YTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSY 390
++ T V V D +
Sbjct: 265 LLV------------------------------DQRDEWRHKTASRFVVVLDAKTGERLA 294
Query: 391 VLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448
EI D+ +S +L + D ++ + D+ES + +
Sbjct: 295 KFEMGHEI----DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350
Query: 449 FS 450
+
Sbjct: 351 TA 352
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 31/209 (14%), Positives = 53/209 (25%), Gaps = 26/209 (12%)
Query: 14 PVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK 73
+ + DGS A G I A S
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---EDEFLINHPAYSQKAG 207
Query: 74 LLFSSGHSREIRVWDLST--LKCLRSWKGHDGPAIGMACHPS------------------ 113
L ++ +I DLS+ K L + + P
Sbjct: 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 267
Query: 114 --GGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVR 171
A R V+V D G F+ + SI D L + D T+
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLY 326
Query: 172 VWDLLAKKCVATLDKHFSRVTSMAITSDG 200
+ D + + + ++++ + G
Sbjct: 327 IHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 26/185 (14%), Positives = 49/185 (26%), Gaps = 21/185 (11%)
Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVW 469
G + V + + + +E + A+S+K LV + I
Sbjct: 168 GSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQK-AGRLVWPTYTGKIHQI 221
Query: 470 SFDGLSDDAEQPMNLKAKAV------------VAAHGKDINSLAVAPNDSLVCTGSQDRT 517
+ +A VA H + + R
Sbjct: 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 281
Query: 518 ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ--VVITASGDKTIKIWSISDGSCLKTFE 575
V + F I S+ S ++ + ++GDKT+ I G L++
Sbjct: 282 VVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340
Query: 576 GHTSS 580
Sbjct: 341 QLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 30/289 (10%), Positives = 67/289 (23%), Gaps = 40/289 (13%)
Query: 27 VSSDGSFIACACGES------INIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG- 79
+ D + ++D + I+GG + ++ D + +
Sbjct: 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHAST 66
Query: 80 ---------HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSG---------GLLATAG 121
+ + V+D TL + D P + +P L
Sbjct: 67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126
Query: 122 ADRKVLVWDVDGGFCTHYFKGH-------KGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
V V D++G + + D + + T +
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD-GSLAKVAFGTEGTPEITH 185
Query: 175 LLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEA 234
+ A + L+ ++ DL K + EA
Sbjct: 186 TEVFHPE-----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240
Query: 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283
A ++ + + V + +A +
Sbjct: 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.1 bits (136), Expect = 3e-09
Identities = 26/272 (9%), Positives = 65/272 (23%), Gaps = 21/272 (7%)
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCL----DTCALS--SGKILIVTGSKDNSVRLWDSESR 431
V+V+D ++ + + + +L+ +L S +V + D E +
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 432 CCV-------GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS-------FDGLSDD 477
+ V+ ++ T ++ + L +
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199
Query: 478 AEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKR 537
GK + + + A H+
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 538 GIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-GHTSSVLRASFLTRGAQIVSC 596
+ + + + G L FE GH + S +
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319
Query: 597 GADGLVKLWTVRTGECIATYDKHEDKIWALAV 628
D + + +GE + + ++ +
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQLGHGPQVITT 351
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 65.7 bits (159), Expect = 6e-12
Identities = 43/349 (12%), Positives = 100/349 (28%), Gaps = 36/349 (10%)
Query: 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124
L + + + +I + D + K ++ SG L G D
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDA 83
Query: 125 KVLVWDVDGGFCT-----HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK 179
++ + D+ T + V SS + D+ + + D +
Sbjct: 84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLE 142
Query: 180 CVATLDKHFSRVTSMAITSDGST-LISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238
+ V + + I A + + ++++ L V ++
Sbjct: 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT- 201
Query: 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISF 298
+I + + + + N++ + + K ++
Sbjct: 202 ----------------SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245
Query: 299 EMDDSKRGFTAATVLPSNQGLLCVTA---DQQLLLYTTVEVPEKKMELILSKRLVGYNEE 355
++ + A + G + T+ D + L T + L G
Sbjct: 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 305
Query: 356 ILDLKFLGEEEQYLAVATNI-------EQVQVYDLSSMSCSYVLAGHSE 397
L +K + +L V T + V V+DL ++ Y + +E
Sbjct: 306 SLFIKT-HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE 353
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 62.7 bits (151), Expect = 6e-11
Identities = 60/462 (12%), Positives = 121/462 (26%), Gaps = 96/462 (20%)
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
L D + D + + D +KK V +D ++ V +++ G L+ GRD
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRD 82
Query: 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269
+++ DL +E F ++ TI
Sbjct: 83 ARIDMIDLWAKEPTKVAEIKIGIE-----ARSVESSKFKGYEDRYTI-----------AG 126
Query: 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLL 329
+ + ++ + T P + + + +
Sbjct: 127 AYWPPQFAIMDGETLEPK----------QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 176
Query: 330 LYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389
V+ K + V D+ +++ +
Sbjct: 177 FIVNVKETGK-----------------------------------VLLVNYKDIDNLTVT 201
Query: 390 YVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVG-TGHMGAVGAVA 448
+ A D SS + + + N V + DS+ R + G G A
Sbjct: 202 SIGAAPFLADGGWD----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508
+ V +S S G K A + G + P S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 509 VC-------TGSQDRTACVWRLPDLVSVVTFRGHK---------RGIWSVEFSPV-DQVV 551
+ ++ V+ L +L + + + E++ D+V
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 552 ITASG------------DKTIKIWSISDGSCLKTFEGHTSSV 581
+ DKT+K+ ++ L T G +
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFNVY 419
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 61.5 bits (148), Expect = 1e-10
Identities = 23/197 (11%), Positives = 51/197 (25%), Gaps = 8/197 (4%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW-- 98
I +VD + I I+ G + +S + L G I + DL + +
Sbjct: 43 QIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 99 ---KGHDGPAIGMACHPSG-GLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154
+A A + + D + V + +HP
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 155 DTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNL 214
+ + + S + + ++ V ++ ++ L G D
Sbjct: 162 EPRVAAI-IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 215 WDLRDYSCKLTVPTYEM 231
+ +
Sbjct: 221 FMTAANNSNKVAVIDSK 237
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.0 bits (87), Expect = 0.003
Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 6/109 (5%)
Query: 546 PVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLW 605
+ +T I + +K + +V + G ++ G D + +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMI 88
Query: 606 TVRTGEC-----IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649
+ E I + + G + G D
Sbjct: 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 137
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 64.0 bits (155), Expect = 2e-11
Identities = 53/447 (11%), Positives = 119/447 (26%), Gaps = 68/447 (15%)
Query: 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209
+ D + + D + + D + LD ++ V +++ G L GRD
Sbjct: 24 QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRD 82
Query: 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269
VN+ DL + + ++
Sbjct: 83 GKVNMIDLWMKEPTTVAEI-----KIGSEARSIETSKMEGWEDKY-----------AIAG 126
Query: 270 VGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTA--DQQ 327
+ + ++ + +S+ E + AA + + V +
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186
Query: 328 LLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS 387
+LL ++ K I E L L +Y A N V +
Sbjct: 187 ILLVDYTDLNNLKTTEI-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239
Query: 388 CSYVLAGHSEIVLCLDTCA----LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443
+ A + G + + D+SV L ++ +
Sbjct: 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----GHPDNAWK 295
Query: 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVA 503
+ + + + + ++ ++ + +N + S+AV
Sbjct: 296 ILDSFPALGGGSLFI-KTHPNSQYLY--------VDATLN--------PEAEISGSVAV- 337
Query: 504 PNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSP-VDQVVITASG------ 556
+ + D + + + G R + EF+ +V +
Sbjct: 338 FDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPR-VVQGEFNKDGTEVWFSVWNGKDQES 394
Query: 557 ------DKTIKIWSISDGSCLKTFEGH 577
DKT+++ + L T G
Sbjct: 395 ALVVVDDKTLELKHVIKDERLVTPTGK 421
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 64.0 bits (155), Expect = 3e-11
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 18/196 (9%)
Query: 41 SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----L 95
I ++D S IK+ ++ G + LS + LF G ++ + DL + +
Sbjct: 43 QIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI 101
Query: 96 RSWKGHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHP 154
+ A A + ++ D + +HP
Sbjct: 102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP 161
Query: 155 DTD----------KSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS-MAITSDGSTL 203
+ + + + + + D + T + R +
Sbjct: 162 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221
Query: 204 ISAGRDKVVNLWDLRD 219
I+A + +
Sbjct: 222 ITAANARNKLVVIDTK 237
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (89), Expect = 0.002
Identities = 28/188 (14%), Positives = 55/188 (29%), Gaps = 17/188 (9%)
Query: 13 EPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDD 72
+ V + GG +F+ G + + S+ + I + A D
Sbjct: 240 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV-ALIGTDPEGHPDNAWKILD 298
Query: 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVD 132
G S I+ S + + + G + G+D + +
Sbjct: 299 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 358
Query: 133 GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGS------------DDATVRVWDLLAKKC 180
+G VV F+ D + + FS DD T+ + ++ +
Sbjct: 359 EWAGIT--EGQPRVVQ-GEFNKDGTE-VWFSVWNGKDQESALVVVDDKTLELKHVIKDER 414
Query: 181 VATLDKHF 188
+ T F
Sbjct: 415 LVTPTGKF 422
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 63.5 bits (153), Expect = 3e-11
Identities = 17/234 (7%), Positives = 53/234 (22%), Gaps = 33/234 (14%)
Query: 23 GPLVVSSDGSFIACACGES--INIVDLSNASIKSTIEGG-------SDTITALALSPDDK 73
+ + + + S + + AS + T S
Sbjct: 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS 186
Query: 74 LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG 133
L S + + + + + + G L+ + G
Sbjct: 187 LAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAG 242
Query: 134 GFCTHYFKGHKGVVSSILFHPD--------TDKSLLF---------SGSDDATVRVWDLL 176
G++ + F + + +
Sbjct: 243 ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302
Query: 177 AKKCVATLDKHFSRVTSMAITSDGSTLI--SAGRDKVVNLWDLRDYSCKLTVPT 228
+ + ++ DG++ ++ +V++++D + +V
Sbjct: 303 VGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 62.7 bits (151), Expect = 5e-11
Identities = 19/265 (7%), Positives = 54/265 (20%), Gaps = 33/265 (12%)
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDT-----CALSSGKILIVTGSKDNSVRLWDSESRC 432
V+V+D + + + +S L+ ++
Sbjct: 98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS 157
Query: 433 CVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA 492
+ GS ++ A + A
Sbjct: 158 DDQLTKSA----SCFHIHPGAAATHYLGSCPASLAASD----LAAAPAAAGIVGAQCTGA 209
Query: 493 HGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI 552
+ LV + G++ G + F ++
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV 269
Query: 553 TASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI------------------- 593
+ + + S +S + AS I
Sbjct: 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN 329
Query: 594 -VSCGADGLVKLWTVRTGECIATYD 617
+ ++ ++ + + ++ +
Sbjct: 330 YANSAGTEVLDIYDAASDQDQSSVE 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.7 bits (125), Expect = 8e-08
Identities = 16/191 (8%), Positives = 51/191 (26%), Gaps = 26/191 (13%)
Query: 20 YGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTI------EGGSDTITALALSPDDK 73
+ + + +C S+ DL+ A + I + + A +
Sbjct: 165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224
Query: 74 LLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAI----------GMACHPSGGLLATA--- 120
L+++ S + + G++ +A + +
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284
Query: 121 ------GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWD 174
A G + + +I+ D + + + ++D
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 175 LLAKKCVATLD 185
+ + ++++
Sbjct: 344 AASDQDQSSVE 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.7 bits (120), Expect = 3e-07
Identities = 38/357 (10%), Positives = 78/357 (21%), Gaps = 43/357 (12%)
Query: 100 GHDGPAIGMACHPSGG-----LLATAGADRKVLVWDVDGGFCTHYFKGHK--GVVSS--- 149
DG + L A + V G + G V+
Sbjct: 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76
Query: 150 -ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH-------FSRVTSMAITSDGS 201
T + G V V+D + +A ++ RV + + +
Sbjct: 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136
Query: 202 TL-ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260
L + S + I PG+A +L S
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----HIHPGAAATHYLGSCPASLA---- 188
Query: 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLL 320
+ + C Q S A+++L +
Sbjct: 189 -------ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241
Query: 321 CVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQV 380
T + + + + + + D + E + E
Sbjct: 242 GATMKAAIDGNESGRKADNFRS---AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298
Query: 381 YDLSSMSCSYVLAGHSEIVLCLDTCALSSG--KILIVTGSKDNSVRLWDSESRCCVG 435
S S ++ + D + + + ++D+ S
Sbjct: 299 VTASVGQTSGPISNGHDS----DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.0 bits (118), Expect = 6e-07
Identities = 21/229 (9%), Positives = 52/229 (22%), Gaps = 22/229 (9%)
Query: 413 LIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAV-------AFSKKLQNFLVSGSSD 463
+ + + W + +G G ++ A + G
Sbjct: 36 ITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRT 95
Query: 464 HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS-LVCTGSQDRTACVWR 522
++V+ A+ + A + G ++ + + + L+ A
Sbjct: 96 DYVEVFDPVTFLPIADIEL---PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152
Query: 523 LPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL------KTFEG 576
+P + S ++ ++ +
Sbjct: 153 VPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA 209
Query: 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWA 625
S A G + + + L A D +E A
Sbjct: 210 QNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.6 bits (117), Expect = 7e-07
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 21 GGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDK--LLFSS 78
G ++++ + S A E+ + V S I G A+ + D +S
Sbjct: 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANS 333
Query: 79 GHSREIRVWDLSTLKCLRSWKGHDGP 104
+ + ++D ++ + S + GP
Sbjct: 334 AGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 42/279 (15%), Positives = 96/279 (34%), Gaps = 11/279 (3%)
Query: 163 SGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRDYS 221
+ S+ + V D+ + K AT+ S I+ DG+ + ++ V++ D +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNA 281
TVP + V P G + + ++ + + G+ + +
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125
Query: 282 DSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKM 341
D LY + D T+S +K +V S +G+ ++ + + +
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185
Query: 342 ELILSKRLVGYNEE----ILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSE 397
+ + + + E + + G + V V + D + + + +
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245
Query: 398 IVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVG 435
A++ GK + V S N+V + D+ +
Sbjct: 246 P----AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 77 SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGA-DRKVLVWDVDGGF 135
++ S I V D+++ K + P G P G + A A V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 136 CTHYFKGHKG 145
Sbjct: 66 VIATVPAGSS 75
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.1 bits (115), Expect = 8e-07
Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLST 91
+IA + ++I+++D+++ + +TI GS+ +SPD ++ ++ HS ++ + D +T
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 92 LKCLRSWKGHDGPAIGMACHP 112
+ + P
Sbjct: 64 NNVIATVPAGSSPQGVAVSPD 84
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 49.1 bits (115), Expect = 9e-07
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLST 91
+++++D I + I G D +A++PD K ++ + + V D +T
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
Query: 92 LKCLRSWKGHDGP-AIG 107
+ P A G
Sbjct: 276 NTITATMAVGKNPYASG 292
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 46.8 bits (109), Expect = 4e-06
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470
+ S+ +++ + D S +G S V+ + + + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIID 60
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 26/273 (9%), Positives = 58/273 (21%), Gaps = 40/273 (14%)
Query: 378 VQVYDLSSMSCSYVLAGHSEIVLCLDTCALSS-GKILIVTGSKDNSVRLWDSESRCCVGV 436
+ V D++S + + S + +S G + V + N V + D+ + +
Sbjct: 14 ISVIDVTSNKVTATIPVGSNPM----GAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69
Query: 437 GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKD 496
G Q ++ + +S + + + ++ GK
Sbjct: 70 VPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKK 129
Query: 497 INSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT------------------------- 531
+ V + +
Sbjct: 130 LYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189
Query: 532 --------FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLR 583
GI V T+ +
Sbjct: 190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAG 248
Query: 584 ASFLTRGAQI-VSCGADGLVKLWTVRTGECIAT 615
+ G ++ V+ V + T AT
Sbjct: 249 IAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL 184
D T + I PD K + + S TV V D AT+
Sbjct: 229 IDTGTNKITARIPVGPDP-AGIAVTPD-GKKVYVALSFCNTVSVIDTATNTITATM 282
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 44.9 bits (104), Expect = 2e-05
Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 2/169 (1%)
Query: 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAK 178
+ V DV T + + PD + + + V + D
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPD-GTKVYVANAHSNDVSIIDTATN 64
Query: 179 KCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAI 238
+AT+ S ++ +++ D + TV T + +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124
Query: 239 PPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLY 287
P G + ++ I+ ++VG D +Y
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 2/137 (1%)
Query: 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILF 152
+ + P + + V D K +
Sbjct: 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN 208
Query: 153 HPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKV 211
T + TV + D K A + +A+T DG + ++
Sbjct: 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNT 267
Query: 212 VNLWDLRDYSCKLTVPT 228
V++ D + T+
Sbjct: 268 VSVIDTATNTITATMAV 284
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 6/67 (8%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ-VVITASGDKTIKIWSISDG 568
T + + +P + V + S T+ + +
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276
Query: 569 SCLKTFE 575
+ T
Sbjct: 277 TITATMA 283
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 550 VVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI-VSCGADGLVKLWTVR 608
I S I + ++ T S+ + A G ++ V+ V +
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62
Query: 609 TGECIATYDKHEDKIW 624
T IAT
Sbjct: 63 TNNVIATVPAGSSPQG 78
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.7 bits (88), Expect = 0.002
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 80 HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGG-LLATAGADRKVLVWDVDGGFCTH 138
+ + + D T K PA G+A P G + V V D T
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
Query: 139 YFKGHKG 145
K
Sbjct: 281 TMAVGKN 287
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 39/339 (11%), Positives = 83/339 (24%), Gaps = 31/339 (9%)
Query: 116 LLATAGADRKVLVWDVD--GGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173
+ + +++ VW+++ G G V ++ PD + L + V +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAY 64
Query: 174 DLLAKKCVATLDKHF---SRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYE 230
+ T +T ++ G + + + + V
Sbjct: 65 RIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV 124
Query: 231 MVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290
SA S + K+ R G +
Sbjct: 125 E----GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT----TVEG 176
Query: 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLV 350
+ + F ++ + L + T +PE
Sbjct: 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----------F 226
Query: 351 GYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS-S 409
D+ + A + V+ +S G + S
Sbjct: 227 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 286
Query: 410 GKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448
GK LI G K + + +++ + G + G A
Sbjct: 287 GKYLIAAGQKSHHISVYE------IVGEQGLLHEKGRYA 319
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 4e-07
Identities = 30/317 (9%), Positives = 72/317 (22%), Gaps = 24/317 (7%)
Query: 163 SGSDDATVRVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRD 219
+ + + VW+L + + +V M ++ D L R + V + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68
Query: 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMW 279
LT + P S + + +
Sbjct: 69 DDGALTFAAESAL------PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122
Query: 280 NADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEK 339
+ + + + S+ G L ++
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP--- 179
Query: 340 KMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399
R + ++ + E + V + + + + S+
Sbjct: 180 --------RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QTLDMMPENFSDTR 230
Query: 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVG---AVAFSKKLQNF 456
D G+ L + + ++ V G +
Sbjct: 231 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYL 290
Query: 457 LVSGSSDHTIKVWSFDG 473
+ +G H I V+ G
Sbjct: 291 IAAGQKSHHISVYEIVG 307
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 7e-06
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 69 SPDDKLLFSSGHSREIRVWDLSTLKCLRSWK--GHDGPAIGMACHPSGGLLATAG-ADRK 125
S + +S S++I VW+L+ L + G M P L + +
Sbjct: 1 SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60
Query: 126 VLVWDVDGGFCTHYFKGHKGVVSS---ILFHPD 155
VL + + F + S I
Sbjct: 61 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 11/134 (8%), Positives = 30/134 (22%), Gaps = 9/134 (6%)
Query: 411 KILIVTGSKDNSVRLW--DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKV 468
+ + + + + +W + E + G V + S + V + +
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528
+ + ++ V GS + +
Sbjct: 64 YRIAPDDGALTFAAESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116
Query: 529 VVTFRGHKRGIWSV 542
V G+
Sbjct: 117 PVGVVDVVEGLDGC 130
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 38.7 bits (88), Expect = 0.002
Identities = 10/118 (8%), Positives = 36/118 (30%), Gaps = 8/118 (6%)
Query: 33 FIACACGESINIVDLSNA---SIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWD 88
+IA + I++ +L++ ++ ++ + + +SPD + L+ + +
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 89 LSTLKC---LRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH 143
++ + G ++ G + + +
Sbjct: 66 IAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 46.1 bits (109), Expect = 9e-06
Identities = 23/190 (12%), Positives = 44/190 (23%), Gaps = 21/190 (11%)
Query: 42 INIVDLSNASIKSTIEGGSDTITALALSPDDKLLF-SSGHSREIRVWDLSTLKCLRSWKG 100
+D + + + + K + +S +
Sbjct: 158 FTAIDAETMDVAWQVIVDGN-LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV 216
Query: 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSL 160
+ I A +G + V V T Y K PD K
Sbjct: 217 FNVERI-AAAVKAGNFKTIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTS-PD-GKYF 272
Query: 161 LFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM-------------AITSDGSTLISAG 207
+ +G TV V + K + ++ G+ +
Sbjct: 273 IANGKLSPTVSVIAI--DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330
Query: 208 RDKVVNLWDL 217
D V W++
Sbjct: 331 IDSQVCKWNI 340
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 45.3 bits (107), Expect = 2e-05
Identities = 23/158 (14%), Positives = 39/158 (24%), Gaps = 32/158 (20%)
Query: 27 VSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-SREIR 85
G+F + + + I + SPD K ++G S +
Sbjct: 225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGL-NTSPDGKYFIANGKLSPTVS 283
Query: 86 VWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA-------------TAGADRKVLVWDVD 132
V + L L ++ + P GL T D +V W++
Sbjct: 284 VIAIDKLDDL--FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341
Query: 133 GGFC---------------THYFKGHKGVVSSILFHPD 155
Y GH + D
Sbjct: 342 DAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD 379
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 44.1 bits (104), Expect = 4e-05
Identities = 50/424 (11%), Positives = 106/424 (25%), Gaps = 78/424 (18%)
Query: 71 DDKLLF-SSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129
D+ F S GH E+RV + +++ L I + + + K +
Sbjct: 9 DEYYGFWSGGHQGEVRVLGVPSMRELMR--------IPVF-NVDSATGWGITNESKEI-- 57
Query: 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLD-KHF 188
+ G H +S D K L + + V L K +
Sbjct: 58 -LGGDQQYLNGDCHHPHISMTDGRYD-GKYLFINDKANTRVARIRLDIMKTDKITHIPNV 115
Query: 189 SRVTSMAITSDGSTL--ISAGRDKVVNLWDLRDYSCKLTVPTYEMV-----EAVCAIPPG 241
+ + + T + D D+S + + + + +
Sbjct: 116 QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD 175
Query: 242 SAFDS----------FLSSYNQQTIKK--KRRSLEIHFITVGERGIVRMWNADSACLYEQ 289
D+ + YN + + ++ V +
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG 235
Query: 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY------TTVEVPEKKMEL 343
S + D + T+ TV V
Sbjct: 236 DSKVPVV----DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSV------- 284
Query: 344 ILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLD 403
+ LD F + E + E L + ++ G+
Sbjct: 285 --------IAIDKLDDLFEDKIELRDTIVAEPELG----LGPLHTTFDGRGN-----AYT 327
Query: 404 TCALSSGKILIVTGSKDNSVRLWDSES------RCCVGVGTGHMGAVGAVAFSKKLQNFL 457
T + S + + ++++ ++ + + V GH A + + +L
Sbjct: 328 TLFIDSQ---VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK-WL 383
Query: 458 VSGS 461
V S
Sbjct: 384 VVLS 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.98 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.98 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.92 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.76 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.68 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.61 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.2 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.19 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.18 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.12 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.11 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.08 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.96 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.91 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.49 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.43 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.34 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.31 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.3 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.3 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.22 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.21 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.21 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 98.21 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.19 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.13 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.09 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.03 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.99 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.89 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.47 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.46 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.13 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.8 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.77 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.34 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.25 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.01 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.92 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.45 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.01 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.98 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.75 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 88.26 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.88 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.5 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 85.11 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 84.11 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.41 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.8e-42 Score=327.93 Aligned_cols=315 Identities=24% Similarity=0.452 Sum_probs=267.3
Q ss_pred EEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC
Q 005254 45 VDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR 124 (706)
Q Consensus 45 ~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 124 (706)
|.+ .....+.|+||.++|++|+|+|++++||+|+.||.|+|||+++++++.++.+|...|.+++|+|++.++++++.++
T Consensus 3 w~p-~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~ 81 (317)
T d1vyhc1 3 WIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81 (317)
T ss_dssp CCC-CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCC-CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence 533 3445578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEE
Q 005254 125 KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLI 204 (706)
Q Consensus 125 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 204 (706)
.+.+|+....+....+.+|...+.++.|+|+++. +++++.|+.+++||+++++.+..+..|...+.+++|++++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 159 (317)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccccccccccccceeeeccCCCce--EEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEE
Confidence 9999999999999989999999999999998876 99999999999999999999999999999999999999999999
Q ss_pred EEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCC
Q 005254 205 SAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSA 284 (706)
Q Consensus 205 ~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 284 (706)
+++.|+.|++|+..+.+...
T Consensus 160 ~~~~d~~v~~~~~~~~~~~~------------------------------------------------------------ 179 (317)
T d1vyhc1 160 SCSNDQTVRVWVVATKECKA------------------------------------------------------------ 179 (317)
T ss_dssp EEETTSCEEEEETTTCCEEE------------------------------------------------------------
T ss_pred EEeCCCeEEEEeeccceeeE------------------------------------------------------------
Confidence 99999988888875432111
Q ss_pred eEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCC
Q 005254 285 CLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGE 364 (706)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 364 (706)
T Consensus 180 -------------------------------------------------------------------------------- 179 (317)
T d1vyhc1 180 -------------------------------------------------------------------------------- 179 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV 444 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 444 (706)
.+..+...+
T Consensus 180 -----------------------------------------------------------------------~~~~~~~~i 188 (317)
T d1vyhc1 180 -----------------------------------------------------------------------ELREHRHVV 188 (317)
T ss_dssp -----------------------------------------------------------------------EECCCSSCE
T ss_pred -----------------------------------------------------------------------EEecCCCCc
Confidence 111223334
Q ss_pred EEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 005254 445 GAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLP 524 (706)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~ 524 (706)
.++.++|++.. ...... ..........++.++++++.|+.|++||+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 189 ECISWAPESSY-SSISEA--------------------------------TGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp EEEEECCSCGG-GGGGGC--------------------------------CSCC-------CCEEEEEETTSEEEEEETT
T ss_pred eEEEEeecccc-ceeecc--------------------------------ccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 44444444321 000000 011122334467789999999999999999
Q ss_pred CccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEE
Q 005254 525 DLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKL 604 (706)
Q Consensus 525 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 604 (706)
+++++..+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|..+|++++|+|++++|++|+.||+|++
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i 315 (317)
T d1vyhc1 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315 (317)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 005254 605 WT 606 (706)
Q Consensus 605 wd 606 (706)
||
T Consensus 316 Wd 317 (317)
T d1vyhc1 316 WE 317 (317)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-41 Score=324.36 Aligned_cols=312 Identities=20% Similarity=0.333 Sum_probs=252.4
Q ss_pred eEEcCCCCEEEEeeCCeEEEEE--ccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE-----EEE
Q 005254 25 LVVSSDGSFIACACGESINIVD--LSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC-----LRS 97 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d--~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~ 97 (706)
+.+++||+.........-.+.. ....+.++.+ +|...|+|++|+|+|++||+|+ ||.|+|||+.++.. ...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~ 92 (337)
T d1gxra_ 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred ccCCCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee
Confidence 7889999887776655222111 1233455666 6999999999999999999987 78999999976532 223
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCC--CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEEC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDG--GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDL 175 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 175 (706)
..+|...|.+++|+||+++|++++.|+.|++||+.. ++....+..|...+..++|+|++.. +++++.|+.|++|++
T Consensus 93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~i~~~~~ 170 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV--CFSCCSDGNIAVWDL 170 (337)
T ss_dssp CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE--EEEEETTSCEEEEET
T ss_pred ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence 456899999999999999999999999999999874 4566778889999999999998775 999999999999999
Q ss_pred CCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchh
Q 005254 176 LAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQT 255 (706)
Q Consensus 176 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (706)
.+++.......|...+.+++|++++..+++++.|+.+++||+++++.+...
T Consensus 171 ~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~----------------------------- 221 (337)
T d1gxra_ 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH----------------------------- 221 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeccc-----------------------------
Confidence 999999999999999999999999999999999999999987653311100
Q ss_pred hhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeee
Q 005254 256 IKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVE 335 (706)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 335 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T d1gxra_ 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEE
Q 005254 336 VPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIV 415 (706)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 415 (706)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T d1gxra_ 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCc
Q 005254 416 TGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGK 495 (706)
Q Consensus 416 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (706)
.+...|.+++|+|+++ ++++++.|+.+++||+... .......|..
T Consensus 222 -----------------------~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~ 266 (337)
T d1gxra_ 222 -----------------------DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKP-----------DKYQLHLHES 266 (337)
T ss_dssp -----------------------ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSS-----------CEEEECCCSS
T ss_pred -----------------------ccccceEEEEEccccc-ccceecccccccccccccc-----------cccccccccc
Confidence 0223345555666654 5666666666666666543 2234456788
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 496 DINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 496 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
.|++++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.||+|+|||+
T Consensus 267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 89999999999999999999999999999999887765 7899999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.9e-42 Score=320.90 Aligned_cols=302 Identities=21% Similarity=0.227 Sum_probs=252.9
Q ss_pred cccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCe
Q 005254 4 LPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSRE 83 (706)
Q Consensus 4 ~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~ 83 (706)
.+=+..|++.|...+-. ...++++|+|+.||++.++.|.+||+.+++..+.+.+|...|++++|+|+|++||+|+.||.
T Consensus 3 ~~~~~~~~~~p~~~r~~-~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~ 81 (311)
T d1nr0a1 3 FSQTALFPSLPRTARGT-AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81 (311)
T ss_dssp CEEEEEECCCCCCCTTC-CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccccCCCCCCCCC-eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCce
Confidence 34445565555444421 23799999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEEECCCCeE--EEEeeccCCCeEEEEECCCCCEEEEecC--CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCce
Q 005254 84 IRVWDLSTLKC--LRSWKGHDGPAIGMACHPSGGLLATAGA--DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKS 159 (706)
Q Consensus 84 i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 159 (706)
|+|||+.++.. ...+..|..+|.+++|+|++++|++++. +..+++|++++++....+.+|...|.+++|+|+++.
T Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~- 160 (311)
T d1nr0a1 82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF- 160 (311)
T ss_dssp EEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC-
T ss_pred EeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccee-
Confidence 99999988764 3567889999999999999999999875 456999999999999999999999999999998764
Q ss_pred EEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 160 LLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 160 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
++++|+.||.|++||+++++....+..|...|.++.|+|+++++++++.|+.|++||..++.....+...
T Consensus 161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---------- 230 (311)
T d1nr0a1 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD---------- 230 (311)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT----------
T ss_pred eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccc----------
Confidence 5788999999999999999999999999999999999999999999999999999998765433222100
Q ss_pred CCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCee
Q 005254 240 PGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGL 319 (706)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 319 (706)
T Consensus 231 -------------------------------------------------------------------------------- 230 (311)
T d1nr0a1 231 -------------------------------------------------------------------------------- 230 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceE
Q 005254 320 LCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIV 399 (706)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i 399 (706)
.....+|...|
T Consensus 231 ---------------------------------------------------------------------~~~~~~h~~~V 241 (311)
T d1nr0a1 231 ---------------------------------------------------------------------SLKNVAHSGSV 241 (311)
T ss_dssp ---------------------------------------------------------------------TSSSCSSSSCE
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 00234577778
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCc---CeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMG---AVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
.++. ++|+++. |++|+.||.|++||+++++++..+..+.. .+.++.|++ . .+++++.||.|++||.+
T Consensus 242 ~~~~--~s~~~~~-l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~--~-~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 242 FGLT--WSPDGTK-IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--Q-ALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEE--ECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS--S-CEEEEETTCCEEEEETT
T ss_pred cccc--cCCCCCE-EEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecC--C-EEEEEECCCEEEEEeCC
Confidence 8887 7788876 89999999999999999999988876543 344455444 3 68899999999999963
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-40 Score=313.56 Aligned_cols=240 Identities=18% Similarity=0.310 Sum_probs=214.6
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC--ceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEE
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES--RCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWS 470 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~ 470 (706)
.+|...|.+++ ++|+++. |++++.||.|++||+.. .+....+..|...+..++|+|++. ++++++.|+.+++|+
T Consensus 94 ~~h~~~I~~v~--~s~dg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~ 169 (337)
T d1gxra_ 94 LNRDNYIRSCK--LLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWD 169 (337)
T ss_dssp SCTTSBEEEEE--ECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCCCCcEEEEE--EcCCCCE-EEEeecccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 45677788887 7888877 89999999999999874 455667788999999999999987 899999999999999
Q ss_pred ecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE
Q 005254 471 FDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 550 (706)
+.... .......|...+.+++|++++..+++++.|+.+++||+++++.+..+. |...|.+++|+|++++
T Consensus 170 ~~~~~----------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~ 238 (337)
T d1gxra_ 170 LHNQT----------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW 238 (337)
T ss_dssp TTTTE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred ccccc----------ccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccc
Confidence 87653 555667788999999999999999999999999999999998877665 8899999999999999
Q ss_pred EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 551 VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
|++++.|+.+++||+.+++... ...|...|++++|+|++++|++++.||.|++||+.+++++..+ .|.+.|.+++|+|
T Consensus 239 l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~ 316 (337)
T d1gxra_ 239 LAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT
T ss_pred cceecccccccccccccccccc-ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeC
Confidence 9999999999999998887764 4569999999999999999999999999999999999998776 5788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 005254 631 KTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 631 ~~~~l~~~~~dg~i~vw~~ 649 (706)
++++|++++.||.|++||+
T Consensus 317 d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 317 DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEE
Confidence 9999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.4e-40 Score=320.15 Aligned_cols=325 Identities=23% Similarity=0.356 Sum_probs=255.9
Q ss_pred EeeCCeEEEEEccCCeE----EEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee------------
Q 005254 36 CACGESINIVDLSNASI----KSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK------------ 99 (706)
Q Consensus 36 ~~~~~~i~i~d~~~~~~----~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------ 99 (706)
-...+...+|+....+. +....+|.+.|+||+|||||++||+|+ |+.|+|||+.+++.+..+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~ 112 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112 (388)
T ss_dssp EECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------
T ss_pred cCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccc
Confidence 33444677888754432 223336999999999999999999986 8899999999998887764
Q ss_pred ------ccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 100 ------GHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 100 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
.|...|.+++|+|++++|++|+.|+.|++||...++.+..+.+|...|.+++|++++.. +++++.++.+++|
T Consensus 113 ~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~~~~~~~~i~~~ 190 (388)
T d1erja_ 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDRTVRIW 190 (388)
T ss_dssp ------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE--EEEEETTSEEEEE
T ss_pred ccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc--ccccccceeeeee
Confidence 35667999999999999999999999999999999999999999999999999998776 9999999999999
Q ss_pred ECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccc
Q 005254 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQ 253 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (706)
|..+.........+...+....+.+++++|++++.||.|++|+..++.....+..
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~------------------------- 245 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS------------------------- 245 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------------
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc-------------------------
Confidence 9999988887776666555555556889999999999999999876553332210
Q ss_pred hhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEe
Q 005254 254 QTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTT 333 (706)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (706)
T Consensus 246 -------------------------------------------------------------------------------- 245 (388)
T d1erja_ 246 -------------------------------------------------------------------------------- 245 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEE
Q 005254 334 VEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKIL 413 (706)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 413 (706)
......+|...|.++. +.+++..
T Consensus 246 ------------------------------------------------------~~~~~~~h~~~v~~l~--~s~~~~~- 268 (388)
T d1erja_ 246 ------------------------------------------------------ENESGTGHKDSVYSVV--FTRDGQS- 268 (388)
T ss_dssp -----------------------------------------------------------CCCSSCEEEEE--ECTTSSE-
T ss_pred ------------------------------------------------------ccccccCCCCCEEEEE--ECCCCCE-
Confidence 0002335667777777 7777776
Q ss_pred EEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeec
Q 005254 414 IVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAH 493 (706)
Q Consensus 414 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (706)
+++++.||.|++||+.++.......... ..........|
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~ 307 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPN-----------------------------------------SGTCEVTYIGH 307 (388)
T ss_dssp EEEEETTSEEEEEEC--------------------------------------------------------CEEEEEECC
T ss_pred EEEEECCCcEEEEeccCCcccccccccc-----------------------------------------ccceeeecccc
Confidence 8899999999999987654332211100 00023334457
Q ss_pred CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEE------ccCCCEEEEecCCCcEEEEEcC
Q 005254 494 GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEF------SPVDQVVITASGDKTIKIWSIS 566 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~i~iwd~~ 566 (706)
...|.+++|+|++++|++|+.||.|++||+.+++++..+++|.+.|+++++ +|++++|++|+.||+|+||+++
T Consensus 308 ~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 788999999999999999999999999999999999999999999999985 5789999999999999999984
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-39 Score=316.35 Aligned_cols=243 Identities=26% Similarity=0.482 Sum_probs=207.5
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..|...|.+++ ++|+++. |++|+.||.|++||...++.+....+|...|.++++++++. .+++++.++.+++||..
T Consensus 118 ~~~~~~V~~l~--~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~ 193 (388)
T d1erja_ 118 PSSDLYIRSVC--FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLR 193 (388)
T ss_dssp -CCCCBEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT
T ss_pred cCCCCCEEEEE--ECCCCCc-ceecccccccccccccccccccccccccccccccccccccc-cccccccceeeeeeecc
Confidence 45667788887 7888777 99999999999999999999999999999999999999977 88999999999999987
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEc-CCCCEEEEeeCCCcEEEEeCCCccEEEEEe-------ecCCcEEEEEE
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVA-PNDSLVCTGSQDRTACVWRLPDLVSVVTFR-------GHKRGIWSVEF 544 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~ 544 (706)
... ...... +.....++.+. +++++|++++.||.|++||..++.....+. +|...|.+++|
T Consensus 194 ~~~----------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 262 (388)
T d1erja_ 194 TGQ----------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262 (388)
T ss_dssp TTE----------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred ccc----------cccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence 642 233333 34444455554 588999999999999999999987776653 57889999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCc------------eEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 545 SPVDQVVITASGDKTIKIWSISDGS------------CLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 545 s~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
+|++++|++++.||.|++||+.++. +......|...|.+++|+|++++|++|+.||.|++||+.++++
T Consensus 263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 9999999999999999999997653 3345556889999999999999999999999999999999999
Q ss_pred EEEeccCCCcEEEEEE------cCCCCEEEEEeCCCcEEEEECC
Q 005254 613 IATYDKHEDKIWALAV------GKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 613 ~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+..+++|.+.|.++++ +|++++|+||+.||+|++|+++
T Consensus 343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999975 6789999999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.2e-39 Score=303.87 Aligned_cols=287 Identities=26% Similarity=0.454 Sum_probs=269.0
Q ss_pred eEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 347 KRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 347 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
..+.+|.+.|.+++|+| ++++|++++.|+.|++||+.+++....+.+|...|.++. +.+++.. ++++..++.+..|
T Consensus 11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~--~~~~~~~-~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKL-LASCSADMTIKLW 86 (317)
T ss_dssp CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSCCCEE
T ss_pred EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEe--eeccccc-ccccccccccccc
Confidence 35778999999999987 678999999999999999999999999999999999998 7787777 8999999999999
Q ss_pred eCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 427 DSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 427 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
+....+....+..|...+.++.+++++. .+++++.|+.+++|++.... ....+..|...+.+++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 155 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY----------CVKTFTGHREWVRMVRPNQDG 155 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC----------EEEEEECCSSCEEEEEECTTS
T ss_pred cccccccccccccccccceeeeccCCCc-eEEeeccCcceeEeecccce----------eeeEEccCCCcceeeecccCC
Confidence 9999999888899999999999999987 89999999999999998653 566677899999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC--------------------CEEEEecCCCcEEEEEcC
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD--------------------QVVITASGDKTIKIWSIS 566 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~~dg~i~iwd~~ 566 (706)
++|++++.|+.|++|++.+++....+..|...+.+++|+|++ ..+++++.|+.|++||+.
T Consensus 156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 999999999999999999999999999999999999998764 478999999999999999
Q ss_pred CCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 005254 567 DGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNL 646 (706)
Q Consensus 567 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 646 (706)
+++++..+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|++
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i 315 (317)
T d1vyhc1 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315 (317)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 005254 647 WH 648 (706)
Q Consensus 647 w~ 648 (706)
||
T Consensus 316 Wd 317 (317)
T d1vyhc1 316 WE 317 (317)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-38 Score=307.91 Aligned_cols=343 Identities=24% Similarity=0.354 Sum_probs=253.4
Q ss_pred EEEeeccCCCe-EEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 95 LRSWKGHDGPA-IGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 95 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
..++++|...| +|++| ++++||+|+.|++|++||+.+++++..+.+|.+.|.+++|+|+ + ++++++.|+.|++|
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~--~l~s~s~D~~i~iw 79 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G--ILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-T--EEEEEETTCCEEEE
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-C--EEEEEecccccccc
Confidence 45789998876 55555 6889999999999999999999999999999999999999986 3 39999999999999
Q ss_pred ECCCCeeEEEeecc--cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccc
Q 005254 174 DLLAKKCVATLDKH--FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSY 251 (706)
Q Consensus 174 d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (706)
+....+.......+ ........+.+++.++++++.|+.|++|++.+.................
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~--------------- 144 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF--------------- 144 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE---------------
T ss_pred cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce---------------
Confidence 99998877666443 3345566778899999999999999999987654322111000000000
Q ss_pred cchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEE
Q 005254 252 NQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLY 331 (706)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 331 (706)
T Consensus 145 -------------------------------------------------------------------------------- 144 (355)
T d1nexb2 145 -------------------------------------------------------------------------------- 144 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC
Q 005254 332 TTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 411 (706)
..+...
T Consensus 145 --------------------------------------------------------------------------~~~~~~ 150 (355)
T d1nexb2 145 --------------------------------------------------------------------------HTPEEN 150 (355)
T ss_dssp --------------------------------------------------------------------------SCTTTC
T ss_pred --------------------------------------------------------------------------eccccc
Confidence 000000
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEe
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA 491 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (706)
.........|...+... .+++. +++++..|+.+++||+.... ......
T Consensus 151 -------------------~~~~~~~~~~~~~v~~~--~~~~~-~~~~~~~d~~i~~~d~~~~~----------~~~~~~ 198 (355)
T d1nexb2 151 -------------------PYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMK----------CLYILS 198 (355)
T ss_dssp -------------------TTEEEEEECCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTE----------EEEEEC
T ss_pred -------------------cceeeeeeecccccccc--ccccc-eeeeecccceeeeeeccccc----------ceeeee
Confidence 00000111122222222 22333 66777777777777765432 344455
Q ss_pred ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceE
Q 005254 492 AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCL 571 (706)
Q Consensus 492 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 571 (706)
.+...+.++.++|++.++++++.|+.|++||+.++..+..+.+|...|.+++|+ +++|++++.||.|++||++++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 276 (355)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee
Confidence 566778899999999999999999999999999999999999999999999997 478999999999999999877654
Q ss_pred EEEeecccCEEEE-EEEeCCCEEEEEeCCCCEEEEECCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 572 KTFEGHTSSVLRA-SFLTRGAQIVSCGADGLVKLWTVRTGECIA-TYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 572 ~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
+..|...+..+ .+++++++|++| .||.|++||+++++++. .+.+|.+.|++++|+|+ .++++++.||.+++|.+
T Consensus 277 --~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 277 --FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp --EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred --cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 44466666655 556777766665 58999999999999885 46789999999999986 57888999999777654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.8e-39 Score=298.87 Aligned_cols=280 Identities=19% Similarity=0.306 Sum_probs=240.1
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC 432 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 432 (706)
.+....+++.| +++.++.+. ++.+.+|++.+......+.+|...|.+++ ++|+++. |++|+.||.|++||+.++.
T Consensus 17 r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~--~sp~g~~-latg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 17 RGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAK--TSPSGYY-CASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp TTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEE--ECTTSSE-EEEEETTSEEEEEESSSTT
T ss_pred CCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEE--EeCCCCe-EeccccCceEeeeeeeccc
Confidence 34555677776 566666664 56799999999999999999999999999 8898877 9999999999999998875
Q ss_pred EE--EEEeCCCcCeEEEEEecCCCeEEEEecC--CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 433 CV--GVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 433 ~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
.. ..+..|...|.+++|+|+++ ++++++. +..+++|+++... ....+..|...|++++|+|++++
T Consensus 92 ~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~----------~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 92 HILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT----------SNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC----------BCBCCCCCSSCEEEEEECSSSSC
T ss_pred cccccccccccCcccccccccccc-cccccccccccccccccccccc----------cccccccccccccccccccccee
Confidence 43 45788999999999999988 6666654 5669999988654 33445678899999999999885
Q ss_pred -EEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe-------ecccC
Q 005254 509 -VCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE-------GHTSS 580 (706)
Q Consensus 509 -l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~ 580 (706)
+++|+.||.|++||+++++....+..|..+|++++|+|++++|++++.|+.|++||+.+++....+. +|...
T Consensus 161 ~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~ 240 (311)
T d1nr0a1 161 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240 (311)
T ss_dssp EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999999999999988877764 47889
Q ss_pred EEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC---cEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 581 VLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED---KIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 581 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
|++++|+|++++|++|+.||.|+|||+.+++++..+..|.. .+.++.| ++.+|++++.||.|++||++
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 99999999999999999999999999999999999986643 3444554 56679999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-38 Score=306.11 Aligned_cols=343 Identities=24% Similarity=0.423 Sum_probs=256.0
Q ss_pred EEeecCCCccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 53 KSTIEGGSDTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 53 ~~~l~~~~~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
..+|+||...| +|++| ++++||+|+.||.|+|||+.+++++.++.+|.++|.+++|+|+ .+|++++.|+.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 46799998875 66655 5889999999999999999999999999999999999999986 58999999999999999
Q ss_pred CCCeEEEEeeCCCCc--EEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 132 DGGFCTHYFKGHKGV--VSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
...+.......+... .....+.+++. .+++++.|+.|++||+.+............. ......+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---- 154 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFV---- 154 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------CC-CEEESCTTTCTTEE----
T ss_pred cccccccccccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccccee-ccceecccccccee----
Confidence 999887766654444 44555666544 5999999999999999877655443221111 11111111100000
Q ss_pred CEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEee
Q 005254 210 KVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQ 289 (706)
Q Consensus 210 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 289 (706)
.....
T Consensus 155 ---~~~~~------------------------------------------------------------------------ 159 (355)
T d1nexb2 155 ---GVLRG------------------------------------------------------------------------ 159 (355)
T ss_dssp ---EEEEC------------------------------------------------------------------------
T ss_pred ---eeeee------------------------------------------------------------------------
Confidence 00000
Q ss_pred ccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEE
Q 005254 290 KSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYL 369 (706)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 369 (706)
+...+.. ...++..+
T Consensus 160 --------------------------------------------------------------~~~~v~~---~~~~~~~~ 174 (355)
T d1nexb2 160 --------------------------------------------------------------HMASVRT---VSGHGNIV 174 (355)
T ss_dssp --------------------------------------------------------------CSSCEEE---EEEETTEE
T ss_pred --------------------------------------------------------------ccccccc---ccccccee
Confidence 0000000 11255678
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
+.+..++.+++||+.+++......++...+.++. +.+.+.. +++++.|+.|++||..++..+..+.+|...|.++++
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI--YDHERKR-CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--EETTTTE-EEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred eeecccceeeeeecccccceeeeecccccccccc--cccccee-eecccccceEEeeecccccccccccccccccccccc
Confidence 8888889999999998888888888888888876 7788887 899999999999999999999999999999999999
Q ss_pred ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEE-EEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSL-AVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
+++ ++++++.||.|++||++.. ......|...+.++ .++++++++++|+ ||.|++||+++++.
T Consensus 252 ~~~---~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 252 SDK---FLVSAAADGSIRGWDANDY------------SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL 315 (355)
T ss_dssp CSS---EEEEECTTSEEEEEETTTC------------CEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCB
T ss_pred ccc---eeeeeeccccccccccccc------------ceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCE
Confidence 864 8999999999999998754 23344555666655 4567777776665 89999999999988
Q ss_pred EE-EEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 529 VV-TFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 529 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
+. .+.+|..+|.+++|+|+ .++++++.||+++||.+
T Consensus 316 ~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 316 VHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 75 46779999999999986 57888899999776654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.4e-37 Score=295.78 Aligned_cols=294 Identities=24% Similarity=0.414 Sum_probs=249.8
Q ss_pred CeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEE
Q 005254 134 GFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVN 213 (706)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 213 (706)
.+..+.+++|.+.|++++|+|+++. |++|+.||.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.+.
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~--l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~ 122 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRL--LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSE--EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCE--EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceee
Confidence 3456778999999999999998876 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCc
Q 005254 214 LWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSD 293 (706)
Q Consensus 214 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 293 (706)
+|+..........
T Consensus 123 ~~~~~~~~~~~~~------------------------------------------------------------------- 135 (340)
T d1tbga_ 123 IYNLKTREGNVRV------------------------------------------------------------------- 135 (340)
T ss_dssp EEESSSSCSCCCE-------------------------------------------------------------------
T ss_pred ccccccccccccc-------------------------------------------------------------------
Confidence 9997543211100
Q ss_pred cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe
Q 005254 294 VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT 373 (706)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 373 (706)
T Consensus 136 -------------------------------------------------------------------------------- 135 (340)
T d1tbga_ 136 -------------------------------------------------------------------------------- 135 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCC
Q 005254 374 NIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKL 453 (706)
Q Consensus 374 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (706)
...+.+|....... ....+.. +.....+.....+.............+...+....+.+.+
T Consensus 136 ---------------~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (340)
T d1tbga_ 136 ---------------SRELAGHTGYLSCC---RFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ---------------EEEECCCSSCEEEE---EEEETTE-EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred ---------------ceeccccccccccc---ccccccc-cccccccccccccccccccccccccccceeEeeecccccc
Confidence 00111222222222 2222333 6677778888888888888888888888999999999987
Q ss_pred CeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe
Q 005254 454 QNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR 533 (706)
Q Consensus 454 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 533 (706)
. ++++++.|+.|++||++... ....+..|...|++++|+|++++|++|+.||.|++||+........+.
T Consensus 197 ~-~~~~~~~d~~v~i~d~~~~~----------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 265 (340)
T d1tbga_ 197 R-LFVSGACDASAKLWDVREGM----------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265 (340)
T ss_dssp S-EEEEEETTTEEEEEETTTTE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred c-eeEEeecCceEEEEECCCCc----------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccc
Confidence 6 89999999999999987653 566677899999999999999999999999999999999988877664
Q ss_pred --ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEE
Q 005254 534 --GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWT 606 (706)
Q Consensus 534 --~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 606 (706)
.+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 4667899999999999999999999999999999999999999999999999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-36 Score=289.44 Aligned_cols=327 Identities=26% Similarity=0.488 Sum_probs=259.2
Q ss_pred EECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEec
Q 005254 87 WDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSD 166 (706)
Q Consensus 87 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 166 (706)
|+..+.++...+++|...|.+ +++++|++||+|+.||+|+|||+.+++++..+.+|...|.+++|+|+ ++++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~----~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN----IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT----EEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC----cccccee
Confidence 566677888899999999865 46778999999999999999999999999999999999999999874 4999999
Q ss_pred CCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccc
Q 005254 167 DATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDS 246 (706)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (706)
|+.+++|+............+...+...... ...+..+..|+.+.+|+..+++....+...
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~----------------- 136 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH----------------- 136 (342)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-----------------
T ss_pred cccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecc-----------------
Confidence 9999999999888877776666666665554 357888889999999998765432221100
Q ss_pred ccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 247 FLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
T Consensus 137 -------------------------------------------------------------------------------- 136 (342)
T d2ovrb2 137 -------------------------------------------------------------------------------- 136 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 406 (706)
...... .
T Consensus 137 ---------------------------------------------------------------------~~~~~~----~ 143 (342)
T d2ovrb2 137 ---------------------------------------------------------------------VAAVRC----V 143 (342)
T ss_dssp ---------------------------------------------------------------------SSCEEE----E
T ss_pred ---------------------------------------------------------------------ccccee----e
Confidence 000000 1
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccce
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKA 486 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 486 (706)
...... +++++.|+.+++||....+.+..+..|...+..+.+. +. ++++++.||.|++||++... .
T Consensus 144 ~~~~~~-~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~s~~~dg~i~~~d~~~~~----------~ 209 (342)
T d2ovrb2 144 QYDGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI-HVVSGSLDTSIRVWDVETGN----------C 209 (342)
T ss_dssp EECSSC-EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--SS-EEEEEETTSCEEEEETTTCC----------E
T ss_pred ccccce-eeeecCCCeEEEeecccceeeEEEcCcccccccccCC--CC-EEEEEeCCCeEEEeecccce----------e
Confidence 222233 7778888888888888888888888777766665554 33 78899999999999987653 5
Q ss_pred eEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee---cCCcEEEEEEccCCCEEEEecCCCcEEEE
Q 005254 487 KAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG---HKRGIWSVEFSPVDQVVITASGDKTIKIW 563 (706)
Q Consensus 487 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 563 (706)
......|...+.++++++ ++|++++.||.|++||+...+....+.. |...+.++.++ ++++++++.||.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iw 285 (342)
T d2ovrb2 210 IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 285 (342)
T ss_dssp EEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred eeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEE
Confidence 566677888888777654 5899999999999999998888887765 45567666665 5799999999999999
Q ss_pred EcCCCceEEEEe-----ecccCEEEEEEEeCCCEEEEEeCCCC----EEEEECC
Q 005254 564 SISDGSCLKTFE-----GHTSSVLRASFLTRGAQIVSCGADGL----VKLWTVR 608 (706)
Q Consensus 564 d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~----i~iwd~~ 608 (706)
|++++++++.+. +|...|++++|+|++.+|++|+.||+ |++||+.
T Consensus 286 d~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 999999998875 46778999999999999999999986 9999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-37 Score=300.54 Aligned_cols=313 Identities=16% Similarity=0.211 Sum_probs=241.3
Q ss_pred CCccEEEEEEccCCCEEEEEeccCeEEEEECCCCe--EEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE
Q 005254 59 GSDTITALALSPDDKLLFSSGHSREIRVWDLSTLK--CLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC 136 (706)
Q Consensus 59 ~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~ 136 (706)
+.++|+|++|+|||++||+|+.|+.|+|||.++++ .+..+++|.++|.+++|+|++++|++++.|++|++||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 35789999999999999999999999999998775 6778899999999999999999999999999999999987764
Q ss_pred E--EEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeE----EEeecccceEEEEEEecCCCEEEEEeCCC
Q 005254 137 T--HYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCV----ATLDKHFSRVTSMAITSDGSTLISAGRDK 210 (706)
Q Consensus 137 ~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 210 (706)
. ..+.+|...|.+++|+|+++. +++++.|+.|++|++...... .....|...|.+++|+|++++|++++.|+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~--l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~ 163 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKK--FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSE--EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccccccccc--ceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence 4 445678999999999999876 999999999999998765532 33456889999999999999999999999
Q ss_pred EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeec
Q 005254 211 VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQK 290 (706)
Q Consensus 211 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 290 (706)
.+++|+...............
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~----------------------------------------------------------- 184 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPW----------------------------------------------------------- 184 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTT-----------------------------------------------------------
T ss_pred EEEEEeeccCccccccccccc-----------------------------------------------------------
Confidence 999999865432211100000
Q ss_pred cCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEE
Q 005254 291 SSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLA 370 (706)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 370 (706)
.
T Consensus 185 --------------------------------------------------------------------------~----- 185 (371)
T d1k8kc_ 185 --------------------------------------------------------------------------G----- 185 (371)
T ss_dssp --------------------------------------------------------------------------B-----
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred EEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEe
Q 005254 371 VATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFS 450 (706)
Q Consensus 371 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 450 (706)
.+...+........|...+.++. ++|+++. +++++.|+.|++||+.+++.+..+..|..+|.+++|+
T Consensus 186 ----------~~~~~~~~~~~~~~~~~~v~~~~--~s~~g~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs 252 (371)
T d1k8kc_ 186 ----------SKMPFGELMFESSSSCGWVHGVC--FSANGSR-VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI 252 (371)
T ss_dssp ----------SCCCTTCEEEECCCCSSCEEEEE--ECSSSSE-EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred ----------ccccceeeeeeccCccCcEEEEE--eeccccc-ccccccCCcceEEeeecccceeeeecccccceeeeec
Confidence 00011222334556777888887 8888887 8999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCeEEEEEecCCCCCCC------cccc-------------------------cceeEEEeecCcceEE
Q 005254 451 KKLQNFLVSGSSDHTIKVWSFDGLSDDAE------QPMN-------------------------LKAKAVVAAHGKDINS 499 (706)
Q Consensus 451 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~------~~~~-------------------------~~~~~~~~~~~~~i~~ 499 (706)
|+++ +++ ++.|+.+++|.......... .+.. .........|...|++
T Consensus 253 ~d~~-~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~ 330 (371)
T d1k8kc_ 253 TESS-LVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 330 (371)
T ss_dssp ETTE-EEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred CCCC-EEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEE
Confidence 9986 555 45578788877654321100 0000 0000011237888999
Q ss_pred EEEcCCC----CEEEEeeCCCcEEEEeCCCc
Q 005254 500 LAVAPND----SLVCTGSQDRTACVWRLPDL 526 (706)
Q Consensus 500 ~~~s~~~----~~l~~~~~dg~i~i~d~~~~ 526 (706)
+++.+.+ ..+++++.||.|++||+++.
T Consensus 331 i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred EEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 9998754 46899999999999998643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-36 Score=289.92 Aligned_cols=329 Identities=28% Similarity=0.516 Sum_probs=257.8
Q ss_pred EECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 129 WDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 129 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
|+..+.++...+++|...|.+ +++++|+. |++|+.||+|++||+.+++++.++.+|.+.|.+++|+++ +|++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~--l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~ 75 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST 75 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTE--EEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEET
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCE--EEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccccee
Confidence 555666777889999999865 46666665 999999999999999999999999999999999999875 8999999
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.+++|+...........
T Consensus 76 D~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 94 (342)
T d2ovrb2 76 DRTLKVWNAETGECIHTLY------------------------------------------------------------- 94 (342)
T ss_dssp TSCEEEEETTTTEEEEEEC-------------------------------------------------------------
T ss_pred cccccccccccccceeccc-------------------------------------------------------------
Confidence 9999999976533221110
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 95 -------------------------------------------------------------------------------- 94 (342)
T d2ovrb2 95 -------------------------------------------------------------------------------- 94 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
.+...+.. ....... +..+..|+.+.+|+..+++....+...........
T Consensus 95 -------------------------~~~~~~~~----~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
T d2ovrb2 95 -------------------------GHTSTVRC----MHLHEKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 144 (342)
T ss_dssp -------------------------CCSSCEEE----EEEETTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred -------------------------ccceeEee----eeccccc-ccccccceeEEEeecccccceeeeecccccceeec
Confidence 00001111 1111222 66777888888998888877777665554444333
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccE
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
+... .++.++.|+.+++|+..... ....+..|...+. .+++++.++++++.||.|++||+..++.
T Consensus 145 --~~~~-~~~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~ 209 (342)
T d2ovrb2 145 --YDGR-RVVSGAYDFMVKVWDPETET----------CLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNC 209 (342)
T ss_dssp --ECSS-CEEEEETTSCEEEEEGGGTE----------EEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCE
T ss_pred --cccc-eeeeecCCCeEEEeecccce----------eeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeeccccee
Confidence 2323 68899999999999987542 4455555655554 4455788999999999999999999999
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee---cccCEEEEEEEeCCCEEEEEeCCCCEEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG---HTSSVLRASFLTRGAQIVSCGADGLVKLW 605 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 605 (706)
+..+.+|...+.++.++ +++|++++.|+.|++||+...+....+.. |...+.++.+ +++++++++.||.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iw 285 (342)
T d2ovrb2 210 IHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLW 285 (342)
T ss_dssp EEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEE
T ss_pred eeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEE
Confidence 99999999999988876 46999999999999999999988888765 3445655554 56799999999999999
Q ss_pred ECCCCeEEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEECCch
Q 005254 606 TVRTGECIATYD-----KHEDKIWALAVGKKTEMFATGGSDAL----VNLWHDSTA 652 (706)
Q Consensus 606 d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~----i~vw~~~~~ 652 (706)
|++++++++.+. +|.+.|++++|+|++.+|++|+.||+ |.+||++..
T Consensus 286 d~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 999999988774 57788999999999999999999986 999998753
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.2e-36 Score=287.47 Aligned_cols=290 Identities=21% Similarity=0.352 Sum_probs=257.9
Q ss_pred eEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCc
Q 005254 343 LILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNS 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~ 422 (706)
....+.+.+|.+.|.+++|+| ++.+|++++.||.|++||+.+++....+..|...|.++. +.|++.. +++++.|+.
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~--~~~~~~~-l~~~~~d~~ 120 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA--YAPSGNY-VACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEE--ECTTSSE-EEEEETTCC
T ss_pred eeeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeE--eecccee-eeeecccce
Confidence 345567889999999999997 788999999999999999999999999999999999998 8888887 999999999
Q ss_pred EEEEeCCCc----eEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 423 VRLWDSESR----CCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 423 i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
+++|+.... .....+..|...........+. .+.....+.....+...... .......+...+.
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ----------QTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTE----------EEEEEECCSSCEE
T ss_pred eecccccccccccccceeccccccccccccccccc--cccccccccccccccccccc----------ccccccccceeEe
Confidence 999997654 3455566777777766666653 57788888888888776432 4455566778899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEe--e
Q 005254 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFE--G 576 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~ 576 (706)
...+.+.+.++++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+.....+..+. .
T Consensus 189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~ 268 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877664 3
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||.|++||
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.8e-36 Score=282.94 Aligned_cols=235 Identities=16% Similarity=0.236 Sum_probs=180.5
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE---EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC---VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
|...|.++. +.+++. +++++.|+.+++|+...... ......+...+.++++++++. + ++++.++.+.+|+.
T Consensus 54 h~~~v~~v~--~~~~g~--~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~-~~~~~~~~i~~~~~ 127 (299)
T d1nr0a2 54 HATMITGIK--TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-I-AVAACYKHIAIYSH 127 (299)
T ss_dssp CSSCEEEEE--ECTTSC--EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-C-EEEEESSEEEEEET
T ss_pred CCCcEEEEE--eeccce--eecccceeeEEEeccCCccccccccccccccccccccccccccc-c-cccccccccccccc
Confidence 445566665 556554 45566778888887654321 112234667888999999987 3 44455678999985
Q ss_pred cCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEE-EEeecCCcEEEEEEccCCCE
Q 005254 472 DGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVV-TFRGHKRGIWSVEFSPVDQV 550 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~ 550 (706)
.. . ........+.+++++|+++++++++.||.|++||+.+++... ....|...|++++|+|++++
T Consensus 128 ~~------------~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 128 GK------------L--TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193 (299)
T ss_dssp TE------------E--EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred cc------------c--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 32 1 122344567899999999999999999999999998876544 34568999999999999999
Q ss_pred EEEecCCCcEEEEEcCCCceE---EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEeccC-CCcEE
Q 005254 551 VITASGDKTIKIWSISDGSCL---KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATYDKH-EDKIW 624 (706)
Q Consensus 551 l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~ 624 (706)
|++++.|+.|++||+.++... ..+.+|..+|++++|+|++++|++|+.||.|++||+.++.. +.....| ...+.
T Consensus 194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 273 (299)
T d1nr0a2 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273 (299)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE
Confidence 999999999999999887654 34567899999999999999999999999999999987653 3333344 45566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 625 ALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 625 ~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
++.| +++++|++++.||.|++||++
T Consensus 274 ~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 274 SVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEE-EETTEEEEEETTSCEEEEECC
T ss_pred EEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 6655 667899999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-36 Score=290.52 Aligned_cols=288 Identities=20% Similarity=0.199 Sum_probs=238.3
Q ss_pred CceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCce--eeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCC
Q 005254 353 NEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMS--CSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSES 430 (706)
Q Consensus 353 ~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 430 (706)
.++|.+++|+| +++++++++.++.|++||..+++ ....+.+|.++|.+++ ++|+++. |++++.|+.|++||+.+
T Consensus 7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~--fsp~~~~-l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD--WAPDSNR-IVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEE--EETTTTE-EEEEETTSCEEEEEEET
T ss_pred CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEE--ECCCCCE-EEEEECCCeEEEEeecc
Confidence 46799999987 78899999999999999998765 5667889999999998 8898887 89999999999999987
Q ss_pred ceEE--EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCE
Q 005254 431 RCCV--GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSL 508 (706)
Q Consensus 431 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 508 (706)
+... ..+..|...|.+++|+|+++ .+++++.|+.+++|++..... ..........|...|.+++|+|++++
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~------~~~~~~~~~~~~~~v~~v~~~p~~~~ 155 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQEND------WWVCKHIKKPIRSTVLSLDWHPNSVL 155 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTT------EEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccccc-cceeecccCcceeeeeecccc------cccccccccccccccccccccccccc
Confidence 7644 34567889999999999987 899999999999999876531 11123344567889999999999999
Q ss_pred EEEeeCCCcEEEEeCCC------------------ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCce
Q 005254 509 VCTGSQDRTACVWRLPD------------------LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSC 570 (706)
Q Consensus 509 l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 570 (706)
|++|+.|+.+++|+... +........|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence 99999999999999753 245666778999999999999999999999999999999999999
Q ss_pred EEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECC--CCeEEEE---------------------------------
Q 005254 571 LKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVR--TGECIAT--------------------------------- 615 (706)
Q Consensus 571 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~--------------------------------- 615 (706)
+..+..|..+|.+++|+|++++|++| .|+.+++|... .+.....
T Consensus 236 ~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
T d1k8kc_ 236 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314 (371)
T ss_dssp EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred eeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccc
Confidence 99999999999999999999877765 47766665443 2221100
Q ss_pred ------eccCCCcEEEEEEcCCC----CEEEEEeCCCcEEEEECCch
Q 005254 616 ------YDKHEDKIWALAVGKKT----EMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 616 ------~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vw~~~~~ 652 (706)
...|.+.|+++++.+.+ ..|+|+|.||.|++|++++.
T Consensus 315 ~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 01388899999997754 35899999999999998543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.1e-36 Score=281.74 Aligned_cols=289 Identities=21% Similarity=0.267 Sum_probs=222.1
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-ccCCCeEEEEECCCCCEEEEecCCCcEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHPSGGLLATAGADRKVLV 128 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~v 128 (706)
|+..+.+.||..+|++|+|+||+++||+|+.||.|++||+++++.+..+. +|...|++++|+|++++++ ++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-VSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-EETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-ccceeeEEE
Confidence 57789999999999999999999999999999999999999999988884 6899999999999998655 556899999
Q ss_pred EECCCCeE---EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEE
Q 005254 129 WDVDGGFC---THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLIS 205 (706)
Q Consensus 129 w~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 205 (706)
|+...... ......+...+.+++|+|+++ +++++.++.+.+|+.. +..... ....+.+++|+|+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~---~~~~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD---IAVAACYKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS---CEEEEESSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred eccCCccccccccccccccccccccccccccc---cccccccccccccccc--cccccc--ccccccccccccccccccc
Confidence 99865432 122345788899999999987 3445556789999853 333322 3346788999999999999
Q ss_pred EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCe
Q 005254 206 AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSAC 285 (706)
Q Consensus 206 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 285 (706)
++.||.|++||+++.+....
T Consensus 154 g~~dg~i~~~d~~~~~~~~~------------------------------------------------------------ 173 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEV------------------------------------------------------------ 173 (299)
T ss_dssp EETTSEEEEEEEETTEEEEE------------------------------------------------------------
T ss_pred cccccccccccccccccccc------------------------------------------------------------
Confidence 99999999999754321100
Q ss_pred EEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCC
Q 005254 286 LYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEE 365 (706)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 365 (706)
T Consensus 174 -------------------------------------------------------------------------------- 173 (299)
T d1nr0a2 174 -------------------------------------------------------------------------------- 173 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE---EEeCCCc
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG---VGTGHMG 442 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~ 442 (706)
....|...+.++. +.|++.. +++++.|+.|++||..++.... .+..|..
T Consensus 174 -------------------------~~~~~~~~i~~~~--~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~ 225 (299)
T d1nr0a2 174 -------------------------KTIVHPAEITSVA--FSNNGAF-LVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225 (299)
T ss_dssp -------------------------EEEECSSCEEEEE--ECTTSSE-EEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred -------------------------ccccccccccccc--ccccccc-cccccccccccccccccccccccccccccccc
Confidence 1112444566665 6677766 8888999999999987765543 3456889
Q ss_pred CeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 443 AVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 443 ~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
.|++++|+|+++ ++++++.||.|++||+...... ....... +...+.++.+ +++++|++++.||.|++|
T Consensus 226 ~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iW 295 (299)
T d1nr0a2 226 KVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDH--------PIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFW 295 (299)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSC--------CEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEE
T ss_pred cccccccccccc-ceEEEcCCCEEEEEECCCCCcc--------eEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEE
Confidence 999999999987 8999999999999999865321 1112222 3345666654 567899999999999999
Q ss_pred eCC
Q 005254 522 RLP 524 (706)
Q Consensus 522 d~~ 524 (706)
|+.
T Consensus 296 dl~ 298 (299)
T d1nr0a2 296 NVP 298 (299)
T ss_dssp ECC
T ss_pred ecc
Confidence 984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-34 Score=272.33 Aligned_cols=299 Identities=19% Similarity=0.236 Sum_probs=230.7
Q ss_pred CcccccceeeceeeeeeeeccceEEcCCCCEEEEeeCCeEEEEEcc--CC--eEEEeecCC-CccEEEEEEcc--CCCEE
Q 005254 3 SLPLKKSYGCEPVLQQFYGGGPLVVSSDGSFIACACGESINIVDLS--NA--SIKSTIEGG-SDTITALALSP--DDKLL 75 (706)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~d~~--~~--~~~~~l~~~-~~~i~~l~~s~--~~~~l 75 (706)
.++||..+++.|.-++.+ ..+++|+|+|+.|++++++.+.++.+. .. .....+.+| ...|++++|+| ++++|
T Consensus 2 ~~~l~~~~p~~p~t~~~~-~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 2 SISLKEIIPPQPSTQRNF-TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CEEEEEEECCCCCCCTTC-CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred ccccccccCCcCCCCCCC-eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 467888888777554433 247999999999999998865554443 32 345677787 46899999998 67899
Q ss_pred EEEeccCeEEEEECCCCeE--------EEEeeccCCCeEEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEeeCCCC
Q 005254 76 FSSGHSREIRVWDLSTLKC--------LRSWKGHDGPAIGMACHPSGGLLATAG--ADRKVLVWDVDGGFCTHYFKGHKG 145 (706)
Q Consensus 76 ~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~ 145 (706)
|+|+.||+|+|||+..++. ...+..|.++|.+++|++++++|++++ .++.+.+|++++++.+..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 9999999999999975432 233556889999999999999998875 467899999999999999999999
Q ss_pred cEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe---ecccceEEEEEEecC-CCEEEEEeCCCEEEEEeCCCCc
Q 005254 146 VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL---DKHFSRVTSMAITSD-GSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 146 ~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.|.+++|+|+++. ++++++.|+.|++||...++..... ..|...|.+++|+|+ +.++++++.||.|++||+++++
T Consensus 161 ~v~~~~~~~~~~~-~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~ 239 (325)
T d1pgua1 161 RINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239 (325)
T ss_dssp CEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccccccccccccc-eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence 9999999998654 4678999999999999888776665 356778999999996 6789999999999999998776
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
.+..+..+
T Consensus 240 ~~~~l~~~------------------------------------------------------------------------ 247 (325)
T d1pgua1 240 FLKYIEDD------------------------------------------------------------------------ 247 (325)
T ss_dssp EEEECCBT------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 55443221
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEe--CCCCcEEEEEecCCcEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFL--GEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~~~~i~ 379 (706)
...+..+.|. .+++++|++++.|+.|+
T Consensus 248 ---------------------------------------------------~~~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 248 ---------------------------------------------------QEPVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp ---------------------------------------------------TBCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred ---------------------------------------------------ccccccceeeeeccCCCEEEEEeCCCeEE
Confidence 1111111111 13677899999999999
Q ss_pred EEeCCCceeeEeeeCCcceE--EEeeeeeecCCCEEEEEeeCCCcEEEEeC
Q 005254 380 VYDLSSMSCSYVLAGHSEIV--LCLDTCALSSGKILIVTGSKDNSVRLWDS 428 (706)
Q Consensus 380 ~~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 428 (706)
+||+.+++.+..+..+...+ ..+.+.+. .+.. +++++.||.|++||+
T Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR-IISLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE-EEEEETTSCEEEEET
T ss_pred EEECCCCCEEEEEEecCCcccCeEEEEEEC-CCCE-EEEEECCCEEEEEEC
Confidence 99999999888877665543 33332222 2334 889999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=259.77 Aligned_cols=289 Identities=15% Similarity=0.157 Sum_probs=227.6
Q ss_pred cEEEEEEccCCCEEEEEeccC-eEEEEECCCC--eEEEEeecc-CCCeEEEEECC--CCCEEEEecCCCcEEEEECCCCe
Q 005254 62 TITALALSPDDKLLFSSGHSR-EIRVWDLSTL--KCLRSWKGH-DGPAIGMACHP--SGGLLATAGADRKVLVWDVDGGF 135 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d~-~i~iwd~~~~--~~~~~~~~~-~~~v~~~~~s~--~~~~l~~~~~d~~i~vw~~~~~~ 135 (706)
.+++++|+|+++.||.++.+. .|+.||.... ..+..+.+| ...|++++|+| ++.+||+|+.||+|++||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 568899999999999886553 3566665443 456677787 46899999998 67899999999999999996543
Q ss_pred E--------EEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCE-EEEE
Q 005254 136 C--------THYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGST-LISA 206 (706)
Q Consensus 136 ~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 206 (706)
. ...+..|.++|.+++|++++...+.++++.++.+.+|++++++.+..+.+|...|.+++|+|++.+ ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 2 233557899999999999988743444456888999999999999999999999999999999875 6788
Q ss_pred eCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeE
Q 005254 207 GRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACL 286 (706)
Q Consensus 207 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 286 (706)
+.|+.+++|+....+......
T Consensus 179 ~~d~~v~~~d~~~~~~~~~~~----------------------------------------------------------- 199 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSASDR----------------------------------------------------------- 199 (325)
T ss_dssp ETTTEEEEEETTTBEEEEEEC-----------------------------------------------------------
T ss_pred ecccccccccccccccceecc-----------------------------------------------------------
Confidence 899999999987544322211
Q ss_pred EeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCC
Q 005254 287 YEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEE 366 (706)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 366 (706)
....+...+.+++|.|+.+
T Consensus 200 -------------------------------------------------------------~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 200 -------------------------------------------------------------THHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp -------------------------------------------------------------SSSCTTCCEEEEEECSTTC
T ss_pred -------------------------------------------------------------cccCCCCccEEeeeccccc
Confidence 1123456678889988888
Q ss_pred cEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee-ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC--
Q 005254 367 QYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA-LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-- 443 (706)
Q Consensus 367 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 443 (706)
.++++++.|+.|++||+.+++....+.+|..++..+.+.. .++++. |++++.|+.|++||+++++.+..+..+...
T Consensus 219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-FATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE-EEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCE-EEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence 9999999999999999999999999998888776554322 366666 899999999999999999999887766544
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEe
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSF 471 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~ 471 (706)
+..+++.+.+..++++++.||.|++||+
T Consensus 298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 3444554443347999999999999985
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1.4e-32 Score=265.66 Aligned_cols=190 Identities=17% Similarity=0.169 Sum_probs=165.3
Q ss_pred eEEcC-CCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEecc--CeEEEEECCCCeEEEEeecc
Q 005254 25 LVVSS-DGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHS--REIRVWDLSTLKCLRSWKGH 101 (706)
Q Consensus 25 ~~~s~-dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~ 101 (706)
--||| ||+++|++..+.|++||..+++.++. +|...|++++|||||++|++++.+ ..|++||+++++.. .+..|
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~ 84 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 84 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCC
Confidence 66999 99999999999999999998887663 689999999999999999887654 37999999887765 56679
Q ss_pred CCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE----------ecCCeEE
Q 005254 102 DGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG----------SDDATVR 171 (706)
Q Consensus 102 ~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~----------~~dg~i~ 171 (706)
...|.+++|+||+++|++++.++.+++|++.+++....+..|...+.+++|+|+++. ++.+ ..++.++
T Consensus 85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~--la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF--IAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE--EEEEEEECSSTTCSCCEEEEE
T ss_pred CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceee--eeeeccccccceeecccccee
Confidence 999999999999999999999999999999999999999999999999999999886 5533 3456799
Q ss_pred EEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 172 VWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
+||..+++... +..+...+..++|+|+|++|++++.++.+.+|+....
T Consensus 163 v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 163 VYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 99998877654 4456778899999999999999999999999987543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-31 Score=248.14 Aligned_cols=281 Identities=15% Similarity=0.207 Sum_probs=209.6
Q ss_pred CeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEE
Q 005254 50 ASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVW 129 (706)
Q Consensus 50 ~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw 129 (706)
.+++++|+||.++|++++|+| |++|+.||+|++||+.++. .+|...|.+++|++++ .+++++.|+++++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 467788999999999999987 8899999999999987643 5688889999988765 56788888999999
Q ss_pred ECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCC
Q 005254 130 DVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRD 209 (706)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 209 (706)
++...+ ....+..+++++++. ++..+.++.+.+|+..+++.+..+..+. .+ .++++++..+++++.+
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~ 139 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGF---TAVLTNDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEE 139 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSE---EEEEETTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETT
T ss_pred cccccc-------cccceeeeeeccCCc---eEEEeecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccc
Confidence 865422 345577788887654 4444566678888888888777765432 22 3556677777777665
Q ss_pred C-EEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 210 K-VVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 210 g-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
+ .+++|++...+...
T Consensus 140 ~~~v~~~~~~~~~~~~---------------------------------------------------------------- 155 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSF---------------------------------------------------------------- 155 (287)
T ss_dssp TSCEEEEETTEEEEEE----------------------------------------------------------------
T ss_pred cceeeeeeccccceee----------------------------------------------------------------
Confidence 4 57777754211100
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 156 -------------------------------------------------------------------------------- 155 (287)
T d1pgua2 156 -------------------------------------------------------------------------------- 155 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAV 447 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~ 447 (706)
.....+...+.++. ++|++.. |++|+.||.|++||+.+++.... +..|...|.++
T Consensus 156 ---------------------~~~~~~~~~v~~~~--~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~ 211 (287)
T d1pgua2 156 ---------------------DLKTPLRAKPSYIS--ISPSETY-IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 211 (287)
T ss_dssp ---------------------ECSSCCSSCEEEEE--ECTTSSE-EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred ---------------------eeeeccCCceeEEE--eccCccc-cccccccccccceeeccccccccccccccccccee
Confidence 01122445667776 7788877 99999999999999999876653 57788999999
Q ss_pred EEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC-c
Q 005254 448 AFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD-L 526 (706)
Q Consensus 448 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~ 526 (706)
+|+|.+.. ...+.+++.++++|+.|+.|++||+.+ .
T Consensus 212 ~~~p~~~~-------------------------------------------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 212 SWKPAEKG-------------------------------------------ANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp EECCCC-------------------------------------------------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred eecccccc-------------------------------------------cccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 99987541 122345778999999999999999976 5
Q ss_pred cEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEc
Q 005254 527 VSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSI 565 (706)
Q Consensus 527 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 565 (706)
+.+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus 249 ~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 249 KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 5677778899999999999986 5889999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-31 Score=261.21 Aligned_cols=286 Identities=20% Similarity=0.263 Sum_probs=207.7
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCcee------eEeeeCCcceEEEeee---e-eecCCCEEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSC------SYVLAGHSEIVLCLDT---C-ALSSGKILI 414 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~i~~~~~---~-~~~~~~~~l 414 (706)
......+|...|.++++. ++++++++.|+.|++||..+... ......|...+..+.. . .......++
T Consensus 6 ~~~~~~~H~~~I~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EEEESSCSSSCEEEEEEC---SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred eeecCCcccCccEEEEEe---CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence 445667899999999975 36899999999999999765431 2222233332221111 0 122233457
Q ss_pred EEeeCCCcEEEEeCCCceEE----E-EE-----eCCCcCeEEEEEecCCC----eEEEEecCCCeEEEEEecCCCCCCCc
Q 005254 415 VTGSKDNSVRLWDSESRCCV----G-VG-----TGHMGAVGAVAFSKKLQ----NFLVSGSSDHTIKVWSFDGLSDDAEQ 480 (706)
Q Consensus 415 ~~~~~dg~i~i~d~~~~~~~----~-~~-----~~~~~~v~~~~~~~~~~----~~l~~~~~d~~i~i~~~~~~~~~~~~ 480 (706)
++++.||.+++|++...... . .. ..+...+..+++.++.. .++++++.||.+++|++.........
T Consensus 83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~ 162 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 162 (393)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence 89999999999986543211 1 11 12445677788876542 47899999999999998654221110
Q ss_pred c-----cccc---eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe------ecCCcEEEEEEcc
Q 005254 481 P-----MNLK---AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR------GHKRGIWSVEFSP 546 (706)
Q Consensus 481 ~-----~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~s~ 546 (706)
. .... .......+...+.+++|+|++ +|++|+.||.|++||+.+++++..+. +|..+|.+++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 0 0000 111122344568899999998 88999999999999999998876554 5889999999999
Q ss_pred CCCEEEEecCCCc---EEEEEcCCCceEEEEe-------------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC
Q 005254 547 VDQVVITASGDKT---IKIWSISDGSCLKTFE-------------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG 610 (706)
Q Consensus 547 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 610 (706)
++++|++|+.|++ |++||+.+++++..+. +|...|++++|+|++++|++++.|++|++||+.+|
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999999874 9999999998888774 79999999999999999999999999999999999
Q ss_pred eEEEEeccCCCcEE----EEEEcCCCCE
Q 005254 611 ECIATYDKHEDKIW----ALAVGKKTEM 634 (706)
Q Consensus 611 ~~~~~~~~~~~~v~----~~~~s~~~~~ 634 (706)
+++.++++|.+.|. .++|+|++..
T Consensus 322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred CEEEEECCcCCcccCCccEEEECCCCCE
Confidence 99999999976553 2444444443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-29 Score=237.28 Aligned_cols=284 Identities=26% Similarity=0.451 Sum_probs=218.6
Q ss_pred EEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 52 IKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 52 ~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
.++....|...|+|++ +||++||+|+.||.|+|||+.+++++.++++|...|.+++| ++++|++|+.|+.|++|++
T Consensus 7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 4456677889999875 57999999999999999999999999999999999999887 5789999999999999999
Q ss_pred CCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee---EEEeecccceEEEEEEecCCCEEEEEeC
Q 005254 132 DGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC---VATLDKHFSRVTSMAITSDGSTLISAGR 208 (706)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 208 (706)
..+........+........ +.... ++++..++.+.+|+..+... ...+..|...+..+.+.+ ..+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~ 156 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLR--FNNGM--MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG 156 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEE--CCTTE--EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEET
T ss_pred cccccccccccccccccccc--ccccc--eeecccccceeEeeccccccccccccccccccccccceecc--cccccccC
Confidence 99988877765555544433 33344 89999999999999877653 345567778887777654 46788888
Q ss_pred CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEe
Q 005254 209 DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYE 288 (706)
Q Consensus 209 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 288 (706)
|+.+++||.++++.+..
T Consensus 157 d~~i~~~d~~~~~~~~~--------------------------------------------------------------- 173 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRT--------------------------------------------------------------- 173 (293)
T ss_dssp TSEEEEEETTTCCEEEE---------------------------------------------------------------
T ss_pred CCceeeecCCCCcEEEE---------------------------------------------------------------
Confidence 88888888765443222
Q ss_pred eccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcE
Q 005254 289 QKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQY 368 (706)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 368 (706)
T Consensus 174 -------------------------------------------------------------------------------- 173 (293)
T d1p22a2 174 -------------------------------------------------------------------------------- 173 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEE
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVA 448 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 448 (706)
+.++...+..+. + .+.. +++++.||.|++||+.+.+.+.....+...+..+.
T Consensus 174 -----------------------~~~~~~~v~~~~--~--~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 225 (293)
T d1p22a2 174 -----------------------LNGHKRGIACLQ--Y--RDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 225 (293)
T ss_dssp -----------------------EECCSSCEEEEE--E--ETTE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -----------------------Eccccccccccc--C--CCCe-EEEecCCCEEEEEecccceeeeeecccceeeeecc
Confidence 222222333332 2 2334 88999999999999999999998888888887654
Q ss_pred EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEe
Q 005254 449 FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWR 522 (706)
Q Consensus 449 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d 522 (706)
+++. +|++++.||.|++||+........ .........+.+|...|++++|+ +++|++++.||+|++||
T Consensus 226 --~~~~-~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 226 --FDNK-RIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --CCSS-EEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred --ccce-EEEEEcCCCEEEEEECCCCccccc-cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 4434 899999999999999876433221 12233556778899999999984 67899999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-29 Score=237.36 Aligned_cols=273 Identities=27% Similarity=0.546 Sum_probs=228.0
Q ss_pred cccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCC
Q 005254 350 VGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSE 429 (706)
Q Consensus 350 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 429 (706)
..+...|.++.+ ++++|++++.||.|++||+.+++....+.+|...|.++. + +++. |++|+.|+.+++|+..
T Consensus 12 ~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~--~--~~~~-l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--Y--DERV-IITGSSDSTVRVWDVN 83 (293)
T ss_dssp CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--C--CSSE-EEEEETTSCEEEEESS
T ss_pred CCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee--c--ccce-eecccccccccccccc
Confidence 345566776654 678999999999999999999999999999999999886 3 4454 9999999999999999
Q ss_pred CceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 430 SRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
.+........+........ +... .++++..++.+.+|+...... .........|...+..+.+.+ ..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~--~~~ 151 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVLHLR--FNNG-MMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFDD--KYI 151 (293)
T ss_dssp SCCEEEEECCCCSCEEEEE--CCTT-EEEEEETTSCEEEEECSSSSC-------CEEEEEECCCSSCEEEEEEET--TEE
T ss_pred ccccccccccccccccccc--cccc-ceeecccccceeEeecccccc-------ccccccccccccccccceecc--ccc
Confidence 9988877665555444433 3323 689999999999999876532 224445566777787777664 478
Q ss_pred EEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 510 CTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 510 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
++++.|+.+++||+.+++.+..+.++...+..+.++ +..+++++.||.|++||+.+.+.+..+.+|...+. .++++
T Consensus 152 ~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~ 227 (293)
T d1p22a2 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFD 227 (293)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECC
T ss_pred ccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee--ecccc
Confidence 889999999999999999999999999999888776 56899999999999999999999999998888875 46678
Q ss_pred CCEEEEEeCCCCEEEEECCC---------CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005254 590 GAQIVSCGADGLVKLWTVRT---------GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWH 648 (706)
Q Consensus 590 ~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 648 (706)
+.+|++++.||.|++||+.+ ..++..+.+|.+.|++++| ++++|+|++.||+|++||
T Consensus 228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 89999999999999999743 3578889999999999999 567899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.4e-30 Score=241.95 Aligned_cols=268 Identities=16% Similarity=0.174 Sum_probs=214.9
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
+.+.+.+|..+|.+++|.+ |++++.||.|++||+.++ ..+|...|.++. +.+ +.. +++++.|++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~--~~~-~~~-~~s~s~D~~v~ 70 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLD--NSK-AQE-YSSISWDDTLK 70 (287)
T ss_dssp EEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEE--CCS-TTC-CEEEETTTEEE
T ss_pred eeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEE--ecC-CCe-EEEEeeccccc
Confidence 4567889999999999965 899999999999998764 357889999986 444 445 78999999999
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcC
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAP 504 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 504 (706)
+|+....+ ....+..+++++++. ++..+.++.+.+|+..... ...... ... ...++++
T Consensus 71 ~w~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~--~~~~~~~ 128 (287)
T d1pgua2 71 VNGITKHE-------FGSQPKVASANNDGF--TAVLTNDDDLLILQSFTGD----------IIKSVR-LNS--PGSAVSL 128 (287)
T ss_dssp ETTEEEEE-------CSSCEEEEEECSSSE--EEEEETTSEEEEEETTTCC----------EEEEEE-CSS--CEEEEEE
T ss_pred cccccccc-------cccceeeeeeccCCc--eEEEeecccceeeecccee----------eeeecc-ccc--eeeeeec
Confidence 99975432 345677888888865 4444556678888876542 222222 223 3456677
Q ss_pred CCCEEEEeeCCC-cEEEEeCCCccEEEEEe-ecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEE-EEeecccCE
Q 005254 505 NDSLVCTGSQDR-TACVWRLPDLVSVVTFR-GHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLK-TFEGHTSSV 581 (706)
Q Consensus 505 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i 581 (706)
++..+++++.++ .+++|++...+....+. .|...+++++|+|++.+|++++.||.|++||+.+++... .+.+|..+|
T Consensus 129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v 208 (287)
T d1pgua2 129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 208 (287)
T ss_dssp CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence 888888888775 69999998776666554 477889999999999999999999999999999887654 467799999
Q ss_pred EEEEEEeC----------CCEEEEEeCCCCEEEEECCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005254 582 LRASFLTR----------GAQIVSCGADGLVKLWTVRT-GECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHD 649 (706)
Q Consensus 582 ~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 649 (706)
.+++|+|+ +.+|++|+.|+.|++||+.+ ++.+..+.+|.+.|++++|+|++ .|++++.||.|++|++
T Consensus 209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999874 46899999999999999977 56777788999999999999986 5889999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.98 E-value=1e-30 Score=255.13 Aligned_cols=361 Identities=11% Similarity=0.021 Sum_probs=259.1
Q ss_pred EEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeE--EEEe---e
Q 005254 26 VVSSDGSFIACACGE-SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKC--LRSW---K 99 (706)
Q Consensus 26 ~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~---~ 99 (706)
+.+++.-++++..++ .|.|||..+++++..+..| ..+..++|||||+++++++.|+.|.+||+.+++. +..+ .
T Consensus 27 ~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 27 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred cCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 334443334555544 8999999999999999877 4689999999999999999999999999988763 3333 3
Q ss_pred ccCCCeEEEEECCCCCEE-EEecCCCcEEEEECCCCeEEEEeeC-----------CCCcEEEEEEcCCCCceEEEEEecC
Q 005254 100 GHDGPAIGMACHPSGGLL-ATAGADRKVLVWDVDGGFCTHYFKG-----------HKGVVSSILFHPDTDKSLLFSGSDD 167 (706)
Q Consensus 100 ~~~~~v~~~~~s~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~l~~~~~d 167 (706)
+|.+.+.+.+|+|||++| ++++.++.|.+||..+++++..+.. +......+.++|++.. ++++...+
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-~~vs~~~~ 184 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKET 184 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEEETTT
T ss_pred CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE-EEEEEccC
Confidence 466677777889999987 6677899999999999998877654 3456778899998764 55677788
Q ss_pred CeEEEEECCCCeeEEEee-cccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcc
Q 005254 168 ATVRVWDLLAKKCVATLD-KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFD 245 (706)
Q Consensus 168 g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (706)
+.|.+||..+++...... .+...+..++|+|+|+++++++. ++.+.+++..+.+....+......
T Consensus 185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~------------- 251 (432)
T d1qksa2 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT------------- 251 (432)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS-------------
T ss_pred CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc-------------
Confidence 999999998877554333 34457889999999998887765 457888888766544333211100
Q ss_pred cccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeC
Q 005254 246 SFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTAD 325 (706)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 325 (706)
T Consensus 252 -------------------------------------------------------------------------------- 251 (432)
T d1qksa2 252 -------------------------------------------------------------------------------- 251 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeee
Q 005254 326 QQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTC 405 (706)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 405 (706)
.+.......
T Consensus 252 --------------------------------------------------------------------~~~~~~~~~--- 260 (432)
T d1qksa2 252 --------------------------------------------------------------------PHPGRGANF--- 260 (432)
T ss_dssp --------------------------------------------------------------------BCCTTCEEE---
T ss_pred --------------------------------------------------------------------cccCcccce---
Confidence 000000000
Q ss_pred eecCCCEEEEEe-eCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCccccc
Q 005254 406 ALSSGKILIVTG-SKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNL 484 (706)
Q Consensus 406 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 484 (706)
..+.......+. ..++.+.+|+..... ...+...+....+++++. .+++++.++..++|.......
T Consensus 261 ~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~-~~~~~s~p~~~~lw~~~~~~~-------- 327 (432)
T d1qksa2 261 VHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGG-SLFIKTHPNSQYLYVDATLNP-------- 327 (432)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSC-CCCEECCTTCSEEEEECTTCS--------
T ss_pred ecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCC-eEEEEecCCccceeecccCCC--------
Confidence 112222212222 246788888766542 235667788899999877 688888899999998654321
Q ss_pred ceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec-----CCCc
Q 005254 485 KAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS-----GDKT 559 (706)
Q Consensus 485 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~ 559 (706)
+.....++++ ||++.+++++.|+.+++|++.++..+ ..|...+.+++|||||++++.+. .+|.
T Consensus 328 --------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~ 395 (432)
T d1qksa2 328 --------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 395 (432)
T ss_dssp --------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCE
T ss_pred --------CCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCc
Confidence 2222334554 89999999999999999998655332 34777899999999999886553 4788
Q ss_pred EEEEEcCCCceEEEEeec
Q 005254 560 IKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 560 i~iwd~~~~~~~~~~~~~ 577 (706)
|+|||..+.++...+.+.
T Consensus 396 i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 396 LVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEETTTTEEEEEECCT
T ss_pred EEEEECCCceEEeEecCC
Confidence 999999999998888753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.98 E-value=5.4e-31 Score=254.37 Aligned_cols=337 Identities=12% Similarity=0.011 Sum_probs=240.3
Q ss_pred EEEEcc-CCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC--cEEEEECCCCeEEEEee
Q 005254 65 ALALSP-DDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR--KVLVWDVDGGFCTHYFK 141 (706)
Q Consensus 65 ~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~ 141 (706)
+-.||| ||+++|+++ +|.|++||++++..++. +|...|.+++|+|||++|++++.+. .|++||+++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 357999 999999886 56999999998877653 5899999999999999999876543 7999999988755 567
Q ss_pred CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCc
Q 005254 142 GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYS 221 (706)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~ 221 (706)
.|...|.+++|+|+++. +++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.+..++....
T Consensus 83 ~~~~~v~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~------- 153 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKF--AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET------- 153 (360)
T ss_dssp CCCCSEEEEEECTTSSE--EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT-------
T ss_pred CCCceEEeeeecccccc--cceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccce-------
Confidence 79999999999999887 999999999999999999999999999999999999999999987653321000
Q ss_pred ceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccC
Q 005254 222 CKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMD 301 (706)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (706)
.+..
T Consensus 154 -----------------------------------------------~~~~----------------------------- 157 (360)
T d1k32a3 154 -----------------------------------------------DGYV----------------------------- 157 (360)
T ss_dssp -----------------------------------------------CSCC-----------------------------
T ss_pred -----------------------------------------------eecc-----------------------------
Confidence 0011
Q ss_pred CCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEE
Q 005254 302 DSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVY 381 (706)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~ 381 (706)
++.+++|
T Consensus 158 -------------------------------------------------------------------------~~~~~v~ 164 (360)
T d1k32a3 158 -------------------------------------------------------------------------MQAIHVY 164 (360)
T ss_dssp -------------------------------------------------------------------------EEEEEEE
T ss_pred -------------------------------------------------------------------------ccceeee
Confidence 1334455
Q ss_pred eCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-------EEEEeCCCcCeEEEEEecCCC
Q 005254 382 DLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-------VGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 382 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~ 454 (706)
+..+++.... ..+...+..+. ++|+++. |++++.++.+.+|+...... ......+...+..+.+++++.
T Consensus 165 d~~~~~~~~~-~~~~~~~~~~~--~spdg~~-l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 165 DMEGRKIFAA-TTENSHDYAPA--FDADSKN-LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp ETTTTEEEEC-SCSSSBEEEEE--ECTTSCE-EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred ccccCceeee-ccccccccccc--ccCCCCE-EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence 5554444322 23344445555 7888887 88899999999998765432 223334444555555666654
Q ss_pred eEEEEecCCC---eEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCC---CCEEEEeeCCCcEEEEeCCCccE
Q 005254 455 NFLVSGSSDH---TIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPN---DSLVCTGSQDRTACVWRLPDLVS 528 (706)
Q Consensus 455 ~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~~ 528 (706)
.+.++..+. ..++|.+.... .....+..+...+..+.+.+. +.++++++.++.+++||+.+++.
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 310 (360)
T d1k32a3 241 -TSEAGEYDLNDMYKRSSPINVDP---------GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV 310 (360)
T ss_dssp -SCCCCCCCCTTGGGGCEECSCCC---------BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE
T ss_pred -cccccceeecccccceeecccCc---------CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE
Confidence 233322211 11223222110 022233344445555555544 34677888899999999988765
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
. .|...|.+++|||||++|++++.||.|++||+++++...++..+..++
T Consensus 311 ~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 311 T----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp E----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred E----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 3 244568999999999999999999999999999998888776655554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.98 E-value=2e-30 Score=253.05 Aligned_cols=357 Identities=12% Similarity=0.011 Sum_probs=252.2
Q ss_pred ccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeE--EEEee---CC
Q 005254 69 SPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFC--THYFK---GH 143 (706)
Q Consensus 69 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~---~~ 143 (706)
+++.-++++.+.+|.|.|||.++++++..+..+ ..+..++|||||+++++++.|+.|.+||+.+++. ...+. .|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 444444678899999999999999999999977 5699999999999999999999999999988763 33332 45
Q ss_pred CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEE-----------EEEecCCCEEE-EEeCCCE
Q 005254 144 KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTS-----------MAITSDGSTLI-SAGRDKV 211 (706)
Q Consensus 144 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~-~~~~dg~ 211 (706)
.+.+.+.+|+|||+. ++++++.++.|++||..+++.+..+..|...+.. +.++|+|..++ +...++.
T Consensus 108 ~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~ 186 (432)
T d1qksa2 108 RSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186 (432)
T ss_dssp EEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe
Confidence 556666778888875 4578888999999999999999888766544433 34444443322 2222333
Q ss_pred EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeecc
Q 005254 212 VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKS 291 (706)
Q Consensus 212 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 291 (706)
|.+|+..+
T Consensus 187 i~~~d~~~------------------------------------------------------------------------ 194 (432)
T d1qksa2 187 ILLVDYTD------------------------------------------------------------------------ 194 (432)
T ss_dssp EEEEETTC------------------------------------------------------------------------
T ss_pred EEEEEccC------------------------------------------------------------------------
Confidence 44443322
Q ss_pred CccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEE
Q 005254 292 SDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAV 371 (706)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 371 (706)
T Consensus 195 -------------------------------------------------------------------------------- 194 (432)
T d1qksa2 195 -------------------------------------------------------------------------------- 194 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCcEEEEeCCCceeeEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-----CCcCeE
Q 005254 372 ATNIEQVQVYDLSSMSCSYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-----HMGAVG 445 (706)
Q Consensus 372 ~~~~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~ 445 (706)
.+...... .+...+..+. ++|+++.++++...+..+.++|..+++.+..... +.....
T Consensus 195 --------------~~~~~~~~i~~g~~~~~~~--~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~ 258 (432)
T d1qksa2 195 --------------LNNLKTTEISAERFLHDGG--LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 258 (432)
T ss_dssp --------------SSEEEEEEEECCSSEEEEE--ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred --------------CCcceEEEEcccCccccce--ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccc
Confidence 11111110 1122344555 8899998777777788999999999988876543 333344
Q ss_pred EEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 005254 446 AVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPD 525 (706)
Q Consensus 446 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 525 (706)
...+...+.........++.+.+|...... ...+...+....++|++..+++++.+...++|+..+
T Consensus 259 ~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~ 324 (432)
T d1qksa2 259 NFVHPTFGPVWATSHMGDDSVALIGTDPEG--------------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 324 (432)
T ss_dssp EEEETTTEEEEEEEBSSSSEEEEEECCTTT--------------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred ceecCCCCceecccccCCceEEeccccccc--------------ccccccEEEEEEEcCCCCeEEEEecCCccceeeccc
Confidence 444444443222233357889999865432 123445678889999999999999999999998665
Q ss_pred ccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-----CCC
Q 005254 526 LVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-----ADG 600 (706)
Q Consensus 526 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg 600 (706)
... |......+++ ||++.|++++.|+.+++|++.++..+ ..|...+.+++|||||++++.+. .+|
T Consensus 325 ~~~------~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g 394 (432)
T d1qksa2 325 LNP------EAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 394 (432)
T ss_dssp TCS------SHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred CCC------CCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCC
Confidence 432 3333334554 89999999999999999998655433 24667899999999999886553 468
Q ss_pred CEEEEECCCCeEEEEeccC
Q 005254 601 LVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 601 ~i~iwd~~~~~~~~~~~~~ 619 (706)
.|.|||..+++....+++.
T Consensus 395 ~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 395 ALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEEEETTTTEEEEEECCT
T ss_pred cEEEEECCCceEEeEecCC
Confidence 8999999999998888664
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.2e-29 Score=243.60 Aligned_cols=108 Identities=14% Similarity=0.277 Sum_probs=93.8
Q ss_pred EeecCcceEEEEEcCCCCEEEEeeCCCc---EEEEeCCCccEEEEEe-------------ecCCcEEEEEEccCCCEEEE
Q 005254 490 VAAHGKDINSLAVAPNDSLVCTGSQDRT---ACVWRLPDLVSVVTFR-------------GHKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 490 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~ 553 (706)
+.+|..+|.+++|+|||++|++|+.|++ |++||+.+++.+..+. +|...|++++|+|++++|++
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S 306 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence 4568888999999999999999998874 8999999998887764 69999999999999999999
Q ss_pred ecCCCcEEEEEcCCCceEEEEeecccCEE----EEEEEeCCCEEEEEe
Q 005254 554 ASGDKTIKIWSISDGSCLKTFEGHTSSVL----RASFLTRGAQIVSCG 597 (706)
Q Consensus 554 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~----~~~~s~~~~~l~~~~ 597 (706)
++.|++|++||+.+++++.++.+|...|. .++|++++..+++++
T Consensus 307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 99999999999999999999999987765 467888887766443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=2.3e-29 Score=247.03 Aligned_cols=358 Identities=13% Similarity=0.044 Sum_probs=254.1
Q ss_pred EccCC--CEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEE--Ee---
Q 005254 68 LSPDD--KLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTH--YF--- 140 (706)
Q Consensus 68 ~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~--- 140 (706)
++.|. -++++.+.||.|+|||+.+++.+.++..| ..+..++|||||++|++++.|++|++||+.+++... .+
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 44543 34567788999999999999999999977 468999999999999999999999999999887443 22
Q ss_pred eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEE-EEEeCCCEEEEEeCCC
Q 005254 141 KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTL-ISAGRDKVVNLWDLRD 219 (706)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~w~~~~ 219 (706)
.+|.+.+.+++|+|||+. +++++..++.+++||..+++....+..|...+..+.+.+++... +..+.++...++....
T Consensus 105 ~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp SEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence 245566777888899875 34566689999999999999999988888777777787777643 3444555444433221
Q ss_pred CcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccc
Q 005254 220 YSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFE 299 (706)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 299 (706)
.+.+.+++.
T Consensus 184 -----------------------------------------------------~~~i~~~~~------------------ 192 (426)
T d1hzua2 184 -----------------------------------------------------TGKVLLVNY------------------ 192 (426)
T ss_dssp -----------------------------------------------------TTEEEEEEC------------------
T ss_pred -----------------------------------------------------CCeEEEEEe------------------
Confidence 111111111
Q ss_pred cCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEE
Q 005254 300 MDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQ 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~ 379 (706)
T Consensus 193 -------------------------------------------------------------------------------- 192 (426)
T d1hzua2 193 -------------------------------------------------------------------------------- 192 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCcee-eEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCC--CcCeEEEEEecCCCe-
Q 005254 380 VYDLSSMSC-SYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGH--MGAVGAVAFSKKLQN- 455 (706)
Q Consensus 380 ~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~- 455 (706)
..... ......+...+..+. +.++++.++++...+..+.+++..+++.+...... ........+...+..
T Consensus 193 ----~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (426)
T d1hzua2 193 ----KDIDNLTVTSIGAAPFLADGG--WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 266 (426)
T ss_dssp ----SSSSSCEEEEEECCSSEEEEE--ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEE
T ss_pred ----ccccceeeEEeccCCccEeee--ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCc
Confidence 11000 001112333455555 88999997777788889999999999988776532 222333444433332
Q ss_pred -EEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE-------eeCCCcEEEEeCCCcc
Q 005254 456 -FLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT-------GSQDRTACVWRLPDLV 527 (706)
Q Consensus 456 -~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~i~d~~~~~ 527 (706)
..+..+.|+.+.+|+....... ....+....+.+|...+..++|+||+++|++ +..+++|++||+.+++
T Consensus 267 ~~~~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 267 VWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp EEEEECTTTCEEEEEECCTTTCT---TTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred eEEeccCCCceEEEeeccccccc---cccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence 3344566889999887654321 1233466778889999999999999999995 4567899999999987
Q ss_pred EEEEEe---------ecCCcEEEEEEccCCCEEEEe-----cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEE
Q 005254 528 SVVTFR---------GHKRGIWSVEFSPVDQVVITA-----SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQI 593 (706)
Q Consensus 528 ~~~~~~---------~~~~~v~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 593 (706)
...++. .|...|.+++|||||++++.+ +.+|.|+|||.++++....+.++. .++|+|+|-
T Consensus 344 ~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 344 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp SCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred cCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 765543 356679999999999977542 468889999999999999988764 335777663
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-29 Score=242.25 Aligned_cols=309 Identities=16% Similarity=0.129 Sum_probs=221.8
Q ss_pred eEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEE---EEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 93 KCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCT---HYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 93 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
+++...++|+..|++|+|+|++++||+|+.|++|+|||++++... ....+|..+|.+++|+|++. .++++|+.||.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~-~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD-LQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS-EEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC-CEEEEcccccc
Confidence 567778899999999999999999999999999999999765432 23336999999999999743 46899999999
Q ss_pred EEEEECCCCeeEEEeecccc-eEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCccccc
Q 005254 170 VRVWDLLAKKCVATLDKHFS-RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFL 248 (706)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (706)
|++|++..+........+.. ......+.+++..+++++.++.+++||++............
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~------------------ 142 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL------------------ 142 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES------------------
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccc------------------
Confidence 99999988887766655443 33455567788899999999999999975432211100000
Q ss_pred ccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCce
Q 005254 249 SSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQL 328 (706)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 328 (706)
T Consensus 143 -------------------------------------------------------------------------------- 142 (342)
T d1yfqa_ 143 -------------------------------------------------------------------------------- 142 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeec
Q 005254 329 LLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALS 408 (706)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 408 (706)
..+ .......... ..+
T Consensus 143 ---------------------~~~-----------------------------------------~~~~~~~~~~--~~~ 158 (342)
T d1yfqa_ 143 ---------------------NSN-----------------------------------------NTKVKNKIFT--MDT 158 (342)
T ss_dssp ---------------------CSS-----------------------------------------SSSSCCCEEE--EEE
T ss_pred ---------------------ccc-----------------------------------------cccceeeeee--eec
Confidence 000 0000000111 334
Q ss_pred CCCEEEEEeeCCCcEEEEeCCCceEE---EEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 409 SGKILIVTGSKDNSVRLWDSESRCCV---GVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 409 ~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
.... +++++.|+.+++|++...... .........+.+..+.+.....+++++.||.+.+|++..............
T Consensus 159 ~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~ 237 (342)
T d1yfqa_ 159 NSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp CSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred cCCc-eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence 4444 888888999999998765432 233445566677777666666899999999999999876543222111100
Q ss_pred -----eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcE
Q 005254 486 -----AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTI 560 (706)
Q Consensus 486 -----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 560 (706)
.......|...+++++|+|++++|++|+.||.|++||+.+++.+..+..+ ..+..++|+|++++|++++.|+.+
T Consensus 238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHH
T ss_pred eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcE
Confidence 11112346667899999999999999999999999999999998887643 345567888999999999999988
Q ss_pred EEEEcC
Q 005254 561 KIWSIS 566 (706)
Q Consensus 561 ~iwd~~ 566 (706)
++|...
T Consensus 317 ~~~~~~ 322 (342)
T d1yfqa_ 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred EEeeee
Confidence 888653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-29 Score=243.05 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=182.2
Q ss_pred CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecC
Q 005254 394 GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDG 473 (706)
Q Consensus 394 ~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 473 (706)
+|..+|.+++ +.+++..++++|+.||.|++|+............+........+.+.+...+++++.++.+++||++.
T Consensus 54 ~h~~~V~~v~--f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~ 131 (342)
T d1yfqa_ 54 RYKHPLLCCN--FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp ECSSCEEEEE--EEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred CCCCCEEEEE--EeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence 4666777777 77777777999999999999999988777776666555555444444445899999999999999875
Q ss_pred CCCCCCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEE---EEEeecCCcEEEEEEcc-C
Q 005254 474 LSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSV---VTFRGHKRGIWSVEFSP-V 547 (706)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~s~-~ 547 (706)
...... ...... ..........+.+++..+++++.|+.|++||+...... .....+...+.+..+.+ +
T Consensus 132 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 132 YGDGVI------AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp HTTBCE------EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred ccccee------eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCC
Confidence 432110 111111 12233456677888999999999999999999766433 22333445566655554 6
Q ss_pred CCEEEEecCCCcEEEEEcCCCce------EEE---------EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE
Q 005254 548 DQVVITASGDKTIKIWSISDGSC------LKT---------FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC 612 (706)
Q Consensus 548 ~~~l~~~~~dg~i~iwd~~~~~~------~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 612 (706)
+..+++++.||.+.+|+...... ... ...|...+++++|+|++++|++|+.||.|++||+.+++.
T Consensus 206 ~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~ 285 (342)
T d1yfqa_ 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE
Confidence 77899999999999999864321 111 124566899999999999999999999999999999999
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 613 IATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 613 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
+..+..+ ..+..++|+|++++|++++.|+.+++|...
T Consensus 286 l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 286 IKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 9888643 344567788899999999999888877653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=9.8e-29 Score=242.55 Aligned_cols=351 Identities=13% Similarity=0.076 Sum_probs=237.4
Q ss_pred EEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCc
Q 005254 150 ILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTY 229 (706)
Q Consensus 150 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~ 229 (706)
..+..+.+..++++.+.||.|++||+.+++.+..+..|. .+..++|+|||++|++++.|+.+++||+.+++.......
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i- 101 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI- 101 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE-
Confidence 346666677677889999999999999999999998774 589999999999999999999999999988764332110
Q ss_pred ceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeE
Q 005254 230 EMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTA 309 (706)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (706)
T Consensus 102 -------------------------------------------------------------------------------- 101 (426)
T d1hzua2 102 -------------------------------------------------------------------------------- 101 (426)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceee
Q 005254 310 ATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCS 389 (706)
Q Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~ 389 (706)
....++...+.++.|+|+...+++.+..++.+.+||..++...
T Consensus 102 -------------------------------------~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~ 144 (426)
T d1hzua2 102 -------------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144 (426)
T ss_dssp -------------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred -------------------------------------eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee
Confidence 0011122333444555544444566668899999999999888
Q ss_pred EeeeCCcceEEEee---------eeeecCCCEEEEEeeCCCcEEEEeCCCceEEE-EEeCCCcCeEEEEEecCCCeEEEE
Q 005254 390 YVLAGHSEIVLCLD---------TCALSSGKILIVTGSKDNSVRLWDSESRCCVG-VGTGHMGAVGAVAFSKKLQNFLVS 459 (706)
Q Consensus 390 ~~~~~~~~~i~~~~---------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~ 459 (706)
.....+...+.... ...++++..++.+....+.+.+++........ ....+...+..++++|+++.++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a 224 (426)
T d1hzua2 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTA 224 (426)
T ss_dssp EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred EEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEee
Confidence 87776655443332 11334444433333344445555444433222 233566778899999999977777
Q ss_pred ecCCCeEEEEEecCCCCCCCcccccceeEEEe--ecCcceEEEEEcCCCC--E-EEEeeCCCcEEEEeCC-------Ccc
Q 005254 460 GSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVA--AHGKDINSLAVAPNDS--L-VCTGSQDRTACVWRLP-------DLV 527 (706)
Q Consensus 460 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~--~-l~~~~~dg~i~i~d~~-------~~~ 527 (706)
...+..+.+++...... ..... ..........+.+.+. . .+..+.|+.+.+|+.. .++
T Consensus 225 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~ 294 (426)
T d1hzua2 225 ANNSNKVAVIDSKDRRL----------SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK 294 (426)
T ss_dssp ETTCSEEEEEETTTTEE----------EEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred eecccceeeeecccccE----------EEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence 77888899999876531 11111 0111111222222111 1 1122335555555543 347
Q ss_pred EEEEEeecCCcEEEEEEccCCCEEEE-------ecCCCcEEEEEcCCCceEEEEe---------ecccCEEEEEEEeCCC
Q 005254 528 SVVTFRGHKRGIWSVEFSPVDQVVIT-------ASGDKTIKIWSISDGSCLKTFE---------GHTSSVLRASFLTRGA 591 (706)
Q Consensus 528 ~~~~~~~~~~~v~~~~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~---------~~~~~i~~~~~s~~~~ 591 (706)
....+.+|...+..++|+|++++|++ ++.|++|+|||+.+++...++. .|...+.+++|||||+
T Consensus 295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk 374 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 374 (426)
T ss_dssp EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence 88889999999999999999999995 4568899999999998766553 3455799999999999
Q ss_pred EEEEE-----eCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 005254 592 QIVSC-----GADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMF 635 (706)
Q Consensus 592 ~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 635 (706)
+++.. +.+|.|+|||.++++....+.++. .++|+|++-
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 87442 357889999999999999998765 346777663
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=4.9e-23 Score=192.41 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=159.3
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+++..+++++..++.+.+|+..+++....+..+ .....++++|++..+++++..++.+.+|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----------- 148 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----------- 148 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----------
T ss_pred cccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeecccc-----------
Confidence 66777776778888899999999999988887654 567889999999977788888999999998765
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCC-CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEec---CCCcEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITAS---GDKTIK 561 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~ 561 (706)
.......+...+..++++|++..+++++.+ +.+.+|+....+...... ....+..++|+++++.++.+. .++.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~ 227 (301)
T d1l0qa2 149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (301)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred ceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeee
Confidence 222233345567899999999988887765 567777777666666555 446678899999999887654 346899
Q ss_pred EEEcCCCceEEEEeecccCEEEEEEEeCCCEE-EEEeCCCCEEEEECCCCeEEEEec
Q 005254 562 IWSISDGSCLKTFEGHTSSVLRASFLTRGAQI-VSCGADGLVKLWTVRTGECIATYD 617 (706)
Q Consensus 562 iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 617 (706)
+||+.+++.+..+.. ...+..++|+|||++| ++++.|+.|++||+.+++.+.++.
T Consensus 228 v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 228 MIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999999999888874 4568999999999987 567788999999999999998886
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=7e-23 Score=191.32 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=216.9
Q ss_pred EEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEE
Q 005254 370 AVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAF 449 (706)
Q Consensus 370 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 449 (706)
++...++.|.+||+.+++.+..+..... +..++ ++|+++.+++++..++.|++||+.+++.+..+..+. .+..+++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~-p~~va--~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~ 81 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSS-EEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCC-ceEEE--EeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence 4456789999999999999888876544 45666 899999977888899999999999999999887665 5688999
Q ss_pred ecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE-eeCCCcEEEEeCCCccE
Q 005254 450 SKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT-GSQDRTACVWRLPDLVS 528 (706)
Q Consensus 450 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~ 528 (706)
++++..+++++..++.+.+|+.... .......+.....++.++|+++.++. +..++.+.+|+..+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T d1l0qa2 82 SPDGKQVYVTNMASSTLSVIDTTSN-----------TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTT-----------EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccccccccccccccceeeecccccc-----------eeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence 9999978888888999999998765 22333345567789999999988765 45678899999999988
Q ss_pred EEEEeecCCcEEEEEEccCCCEEEEecCC-CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeC---CCCEEE
Q 005254 529 VVTFRGHKRGIWSVEFSPVDQVVITASGD-KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGA---DGLVKL 604 (706)
Q Consensus 529 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i 604 (706)
...+..+ ..+..++++|++..+++++.+ +.+.+|+....+....+. ....+..++|+++++.++.++. ++.|++
T Consensus 151 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v 228 (301)
T d1l0qa2 151 INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (301)
T ss_dssp EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred eeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeee
Confidence 8887744 567889999999988777665 567788877776666665 4456778999999998876654 367999
Q ss_pred EECCCCeEEEEeccCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCchhHH
Q 005254 605 WTVRTGECIATYDKHEDKIWALAVGKKTEMF-ATGGSDALVNLWHDSTAAER 655 (706)
Q Consensus 605 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~ 655 (706)
||+.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|.+||+.+++..
T Consensus 229 ~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 229 IDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 999999999888654 467999999999987 57778999999999988654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=1.6e-24 Score=207.29 Aligned_cols=311 Identities=10% Similarity=0.004 Sum_probs=205.7
Q ss_pred EEEccCCCEEEEEeccCeEEEEECCCCeEEEEee-ccCCCeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEeeCC
Q 005254 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWK-GHDGPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGH 143 (706)
Q Consensus 66 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~ 143 (706)
++|+++++||++++.++.|.+||+++++++.+++ .|...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 5789999999999999999999999999999887 4566788999999999875 4567899999999999988877643
Q ss_pred CC------cEEEEEEcCCCCceEEEEEe------------cCCeEEEEECCCCeeEEEeeccc--ceEEEEEEecCCCEE
Q 005254 144 KG------VVSSILFHPDTDKSLLFSGS------------DDATVRVWDLLAKKCVATLDKHF--SRVTSMAITSDGSTL 203 (706)
Q Consensus 144 ~~------~v~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 203 (706)
.. .+..++|+|||+. +++++ .++.+.+|+..+++....+..+. ..+..+.+++++..+
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~--l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKE--VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccCCceEEEEEecCCCE--EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence 32 3567899999887 44433 35556666666555443332221 223333444444333
Q ss_pred EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 204 ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 204 ~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
+. ++.+.+|++.+++...
T Consensus 160 ~~---~~~~~~~~~~~~~~~~----------------------------------------------------------- 177 (346)
T d1jmxb_ 160 VA---GPDIYKMDVKTGKYTV----------------------------------------------------------- 177 (346)
T ss_dssp EE---SSSEEEECTTTCCEEE-----------------------------------------------------------
T ss_pred Ee---CCcceEEEccCCCEEE-----------------------------------------------------------
Confidence 22 1234445544433222
Q ss_pred CeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeC
Q 005254 284 ACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLG 363 (706)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 363 (706)
T Consensus 178 -------------------------------------------------------------------------------- 177 (346)
T d1jmxb_ 178 -------------------------------------------------------------------------------- 177 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcC
Q 005254 364 EEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGA 443 (706)
Q Consensus 364 ~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 443 (706)
.+..+... ..+. +.+++..+.+....++.+.+++..
T Consensus 178 ---------------------------~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------------- 213 (346)
T d1jmxb_ 178 ---------------------------ALPLRNWN-RKGY--SAPDVLYFWPHQSPRHEFSMLYTI-------------- 213 (346)
T ss_dssp ---------------------------EECSTTCC-CTTB--CCCBCCCCCCCCCTTCEEEEEEEE--------------
T ss_pred ---------------------------EEecCCCc-cceE--EeccccEEEEEecCCCceEeeeee--------------
Confidence 22221111 0011 333444323333334444443311
Q ss_pred eEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 005254 444 VGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRL 523 (706)
Q Consensus 444 v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~ 523 (706)
..+.+. ...+.++..++.+.+|++..... .......+...+..+.+++++.+++.... +.|.+||.
T Consensus 214 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~ 279 (346)
T d1jmxb_ 214 ---ARFKDD-KQDPATADLLYGYLSVDLKTGKT---------HTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDL 279 (346)
T ss_dssp ---EEC--------CCCEEEEEEEEEETTTCCE---------EEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEET
T ss_pred ---eeeccC-ceeEeeccCCceEEEEECCCCce---------EEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEEC
Confidence 111111 22455666677788888876531 23345567778889999999888887664 57999999
Q ss_pred CCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 524 PDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 524 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
.+++.+..+. +...+.+++|+|||++|++++.|+.|++||+.+++.+.++..+.+
T Consensus 280 ~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 280 KQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp TTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred CCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 9999888776 556799999999999999999999999999999999999885443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=2.5e-25 Score=212.92 Aligned_cols=324 Identities=11% Similarity=-0.009 Sum_probs=225.7
Q ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 108 MACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 108 ~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
++|+++++||++++.+++|.+||+++++.+..+. .+...+.+++|+||++. +++++..++.|.+||+.+++.+..+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeeeecc
Confidence 4789999999999999999999999999999887 45667899999999875 446677899999999999998877643
Q ss_pred c------cceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 187 H------FSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 187 ~------~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
. ...+..++|+|||+++++++.+.....|..
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~------------------------------------------- 117 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY------------------------------------------- 117 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE-------------------------------------------
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeee-------------------------------------------
Confidence 2 234567899999999988765432222110
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccc
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKK 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 340 (706)
...++.+.+|+..
T Consensus 118 ---------~~~~~~i~~~~~~---------------------------------------------------------- 130 (346)
T d1jmxb_ 118 ---------VVKPPRLEVFSTA---------------------------------------------------------- 130 (346)
T ss_dssp ---------EECCCEEEEEEGG----------------------------------------------------------
T ss_pred ---------ccCcceEEEEecc----------------------------------------------------------
Confidence 1112223333222
Q ss_pred eeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCC--cceEEEeeeeeecCCCEEEEEee
Q 005254 341 MELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGH--SEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 341 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
+++....+..+ ...+..+ ..+++..+++.
T Consensus 131 --------------------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-- 161 (346)
T d1jmxb_ 131 --------------------------------------------DGLEAKPVRTFPMPRQVYLM---RAADDGSLYVA-- 161 (346)
T ss_dssp --------------------------------------------GGGGBCCSEEEECCSSCCCE---EECTTSCEEEE--
T ss_pred --------------------------------------------cceeeeEEEeeeccCceEEE---EecCCCEEEEe--
Confidence 21111111000 0011111 23334442333
Q ss_pred CCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceE
Q 005254 419 KDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDIN 498 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (706)
++.+.+|+..+++.+..+..+ .....+.++|++..+.+....++.+.+++..
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 213 (346)
T d1jmxb_ 162 -GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI-------------------------- 213 (346)
T ss_dssp -SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE--------------------------
T ss_pred -CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee--------------------------
Confidence 256889999999888877654 3455667788877555555666666665432
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeec
Q 005254 499 SLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGH 577 (706)
Q Consensus 499 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 577 (706)
..+.+....++++..++.+.+||+.++..... ...|...+..+.+++++.+++.... +.|.+||..+++.+..+. +
T Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~ 290 (346)
T d1jmxb_ 214 -ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-L 290 (346)
T ss_dssp -EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-C
T ss_pred -eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-C
Confidence 12233444566666777899999998876554 5568888999999999888887654 569999999999988886 5
Q ss_pred ccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc
Q 005254 578 TSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK 622 (706)
Q Consensus 578 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 622 (706)
...+.+++|+|||++|++++.|+.|++||+.+++.+..++.+.+.
T Consensus 291 ~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 567899999999999999999999999999999999999855443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.2e-23 Score=200.17 Aligned_cols=298 Identities=12% Similarity=0.021 Sum_probs=209.5
Q ss_pred CEEEEEeccCeEEEEECCCCeEEEEeecc--CCCeEEEEECCCCCEEE-EecCCCcEEEEECCCCeEEEEeeCCCC----
Q 005254 73 KLLFSSGHSREIRVWDLSTLKCLRSWKGH--DGPAIGMACHPSGGLLA-TAGADRKVLVWDVDGGFCTHYFKGHKG---- 145 (706)
Q Consensus 73 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~---- 145 (706)
+|+++++.|++|.|||+++++.+.++..+ ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 58999999999999999999999998754 45678999999999874 567889999999999999988876543
Q ss_pred -cEEEEEEcCCCCceEEEEEe------------cCCeEEEEECCCCeeEEEeecccceEEEEEEecCCCEEEEEeCCCEE
Q 005254 146 -VVSSILFHPDTDKSLLFSGS------------DDATVRVWDLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGRDKVV 212 (706)
Q Consensus 146 -~v~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 212 (706)
.+..++|+|+++. ++++. .++.+.+||..+++....+.. ...+..++|+|+|+++++++.+ +
T Consensus 82 ~~~~~v~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~ 156 (337)
T d1pbyb_ 82 KSLFGAALSPDGKT--LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--L 156 (337)
T ss_dssp ECTTCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--E
T ss_pred cceeeEEEcCCCcE--EEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--c
Confidence 3457899999887 54443 467899999999998888864 4568889999999999998644 6
Q ss_pred EEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC
Q 005254 213 NLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS 292 (706)
Q Consensus 213 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 292 (706)
.+||..+++....++.........+.+++....
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 189 (337)
T d1pbyb_ 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW----------------------------------------------- 189 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC-----------------------------------------------
T ss_pred ceeeeecCcEEEEeecCCccccceecCCcceee-----------------------------------------------
Confidence 789998887666554432211111111110000
Q ss_pred ccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEE
Q 005254 293 DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVA 372 (706)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 372 (706)
...
T Consensus 190 -----------------------------------------------------------------------------~~~ 192 (337)
T d1pbyb_ 190 -----------------------------------------------------------------------------NQH 192 (337)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred ecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEE-EeCCCcCeEEEEEec
Q 005254 373 TNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGV-GTGHMGAVGAVAFSK 451 (706)
Q Consensus 373 ~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~ 451 (706)
...+....++ .. ...+... ...+..++.+.+|+..++..... ...+...+..+++++
T Consensus 193 ~~~~~~~~~~-------------------~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (337)
T d1pbyb_ 193 ESSGVMATPF-------------------YT--ARKDIDP-ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp TTTTEEEEEE-------------------EE--EBTTSCT-TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred cccceeeeee-------------------ee--eeeccce-eeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc
Confidence 0000000000 00 1111111 22333455688888887765543 455677788889999
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
++. +++.+ ++.+++||+.... ......+...+.+++|+|||++|++++.++.|++||..+++.+..
T Consensus 251 ~~~-~~~~~--~~~i~v~d~~~~~-----------~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 251 AKT-RAFGA--YNVLESFDLEKNA-----------SIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp TSS-EEEEE--ESEEEEEETTTTE-----------EEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred cce-EEEEc--cccEEEEECCCCc-----------EEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 977 45443 5889999998752 222334567789999999999999999999999999999999988
Q ss_pred Eeec
Q 005254 532 FRGH 535 (706)
Q Consensus 532 ~~~~ 535 (706)
++..
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
Confidence 8753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=4.6e-24 Score=203.18 Aligned_cols=310 Identities=12% Similarity=0.071 Sum_probs=218.6
Q ss_pred CEEEEecCCCcEEEEECCCCeEEEEeeCC--CCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccc---
Q 005254 115 GLLATAGADRKVLVWDVDGGFCTHYFKGH--KGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFS--- 189 (706)
Q Consensus 115 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--- 189 (706)
+|+++++.|++|.+||+++++.+..+..+ ...+..++|+|||+. ++++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 58999999999999999999999988653 456789999999875 345677899999999999999888765532
Q ss_pred --eEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 190 --RVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 190 --~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.+..++|+|++++++++..+.....|...
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~------------------------------------------------- 111 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFE------------------------------------------------- 111 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEE-------------------------------------------------
T ss_pred ccceeeEEEcCCCcEEEEeecCCcceeeecc-------------------------------------------------
Confidence 34578999999999888765543333210
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
T Consensus 112 -------------------------------------------------------------------------------- 111 (337)
T d1pbyb_ 112 -------------------------------------------------------------------------------- 111 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
..+..+.+||..+++....+..+. .+.++. ++++++. +++++ +.+.+||
T Consensus 112 -------------------------~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~--~s~dg~~-l~~~~--~~~~~~d 160 (337)
T d1pbyb_ 112 -------------------------VQPTRVALYDAETLSRRKAFEAPR-QITMLA--WARDGSK-LYGLG--RDLHVMD 160 (337)
T ss_dssp -------------------------ECCCEEEEEETTTTEEEEEEECCS-SCCCEE--ECTTSSC-EEEES--SSEEEEE
T ss_pred -------------------------ccccceeeccccCCeEEEeccccC-CceEEE--EcCCCCE-EEEEc--CCcceee
Confidence 111344555555555554444332 233444 7788887 55554 3477899
Q ss_pred CCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCC
Q 005254 428 SESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDS 507 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 507 (706)
..+++....+..+.. .....+.+++..+...+...+....+.. ....+..
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~ 210 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY-----------------------------TARKDID 210 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE-----------------------------EEBTTSC
T ss_pred eecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeee-----------------------------eeeeccc
Confidence 998888777654432 2223344444322222222222222221 1122233
Q ss_pred EEEEeeCCCcEEEEeCCCccEEEE-EeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEE
Q 005254 508 LVCTGSQDRTACVWRLPDLVSVVT-FRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASF 586 (706)
Q Consensus 508 ~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 586 (706)
....+..++.+.+|+..++..... +..+...+..+.++|++.+++.+ ++.|++||+.+++.+..+. +...+.+++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 287 (337)
T d1pbyb_ 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNV 287 (337)
T ss_dssp TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEE
T ss_pred eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEE
Confidence 333444566799999988876553 55677888999999999998876 5789999999999998886 6677899999
Q ss_pred EeCCCEEEEEeCCCCEEEEECCCCeEEEEecc
Q 005254 587 LTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 587 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
+|||++|++++.|+.|++||..+++.+.+++.
T Consensus 288 s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 99999999999999999999999999988874
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.92 E-value=1.5e-21 Score=188.17 Aligned_cols=329 Identities=11% Similarity=-0.049 Sum_probs=227.5
Q ss_pred cCCCccEEEEEEccCCCEEEEE-----eccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec----------
Q 005254 57 EGGSDTITALALSPDDKLLFSS-----GHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG---------- 121 (706)
Q Consensus 57 ~~~~~~i~~l~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------- 121 (706)
..+..++.+++++|||+.+++. +..+.|.+||.++++.+.++..+..+ .++|||||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 3577889999999999998765 23467999999999999998876554 799999999999875
Q ss_pred CCCcEEEEECCCCeEEEEeeCCCCcE-------EEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEE
Q 005254 122 ADRKVLVWDVDGGFCTHYFKGHKGVV-------SSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSM 194 (706)
Q Consensus 122 ~d~~i~vw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 194 (706)
.++.|.+||..+++.+..+..+.... ..+.|+++++..++.....++.+.+|+....+..... ....++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCY 170 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeE
Confidence 35789999999999988877665543 4578899988866666677788999998877765433 345678
Q ss_pred EEecCCCEE-EEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEEecCC
Q 005254 195 AITSDGSTL-ISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGER 273 (706)
Q Consensus 195 ~~~~~~~~l-~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (706)
.++|+|+.+ ++.+.|+.+.+|+............... .
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~-------~---------------------------------- 209 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAML-------T---------------------------------- 209 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecc-------c----------------------------------
Confidence 899998765 5677899999999876543322110000 0
Q ss_pred CeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccC
Q 005254 274 GIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYN 353 (706)
Q Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (706)
T Consensus 210 -------------------------------------------------------------------------------- 209 (373)
T d2madh_ 210 -------------------------------------------------------------------------------- 209 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
.......... ....+.. ++..+.++.+.+|+..+...
T Consensus 210 ---------------------------------------~~~~~~~~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 210 ---------------------------------------AAQNLLTQPA---QANKSGR-IVWPVYSGKILQADISAAGA 246 (373)
T ss_pred ---------------------------------------cCccceeeeE---EECCCce-EEEecCCceEEEEEcCCCeE
Confidence 0000000000 1112222 44555667777777766543
Q ss_pred EEE--EeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEE
Q 005254 434 VGV--GTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCT 511 (706)
Q Consensus 434 ~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 511 (706)
... ...+........+.|... ..++.+.|+.. ...+.+++..++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~--------------------------------~~~~~~~~~~~~~ 293 (373)
T d2madh_ 247 TNKAPIDALSGGRKADTWRPGGW-QQVAYLKSSDG--------------------------------IYLLTSEQSAWKL 293 (373)
T ss_pred EEEEeeccccCcEEeeeeccCcc-eeeEEecCCCe--------------------------------EEEecCCCceEEe
Confidence 322 222333344444444432 23333333221 1223345667777
Q ss_pred eeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCE--EEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeC
Q 005254 512 GSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQV--VITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTR 589 (706)
Q Consensus 512 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~ 589 (706)
...++.+.+||..+++.+..+. +...+..++|+|||+. +++++.|+.|++||+.+++.+.++..+....+.+++.++
T Consensus 294 ~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 294 HAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 8888999999999999988776 6677899999999984 467889999999999999999999988777777877654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=2.3e-20 Score=179.81 Aligned_cols=324 Identities=12% Similarity=-0.008 Sum_probs=214.2
Q ss_pred eccCCCeEEEEECCCCCEEEEec-----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEE---------
Q 005254 99 KGHDGPAIGMACHPSGGLLATAG-----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSG--------- 164 (706)
Q Consensus 99 ~~~~~~v~~~~~s~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~--------- 164 (706)
..+.+++..++++|||+.+++.. ..+.|.+||.++++.+..+..+..+ .++|+|||+. ++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~--l~va~~~~~~~~~ 92 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSE--FALASTSFSRIAK 92 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCE--EEEEeecCCcccc
Confidence 34778999999999999988753 3467999999999999988766554 7999999987 4444
Q ss_pred -ecCCeEEEEECCCCeeEEEeecccceEEE-------EEEecCCCEEEEEeC--CCEEEEEeCCCCcceeeecCcceeee
Q 005254 165 -SDDATVRVWDLLAKKCVATLDKHFSRVTS-------MAITSDGSTLISAGR--DKVVNLWDLRDYSCKLTVPTYEMVEA 234 (706)
Q Consensus 165 -~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~l~~~~~--dg~i~~w~~~~~~~~~~~~~~~~~~~ 234 (706)
..++.|.+||..+++.+..+..+...... +.|+++++.++.... ++.+.+|+..
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~---------------- 156 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG---------------- 156 (373)
T ss_pred cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc----------------
Confidence 34688999999999998887766554433 344444443333221 2223333322
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEcc
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP 314 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (706)
T Consensus 157 -------------------------------------------------------------------------------- 156 (373)
T d2madh_ 157 -------------------------------------------------------------------------------- 156 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeC
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAG 394 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 394 (706)
..+......
T Consensus 157 ----------------------------------------------------------------------~~~~~~~~~- 165 (373)
T d2madh_ 157 ----------------------------------------------------------------------GSSDDQLLS- 165 (373)
T ss_pred ----------------------------------------------------------------------CCeEEEEec-
Confidence 111111111
Q ss_pred CcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCC------cCeEEEEEecCCCeEEEEecCCCeEEE
Q 005254 395 HSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHM------GAVGAVAFSKKLQNFLVSGSSDHTIKV 468 (706)
Q Consensus 395 ~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~d~~i~i 468 (706)
...++. +.++++.++++.+.|+.+.+|+...+........+. .......+.+++ .++..+.++.+.+
T Consensus 166 ---~~~~~~--~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~ 238 (373)
T d2madh_ 166 ---SPTCYH--IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQ 238 (373)
T ss_pred ---cceeEE--EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEE
Confidence 112222 566777767788888888888888776665543221 122334444443 4667778889999
Q ss_pred EEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCC
Q 005254 469 WSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVD 548 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 548 (706)
|+...... ........+........+.|.+...+..+.|+... ..+.+++
T Consensus 239 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------------------~~~~~~~ 288 (373)
T d2madh_ 239 ADISAAGA--------TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI----------------------YLLTSEQ 288 (373)
T ss_pred EEcCCCeE--------EEEEeeccccCcEEeeeeccCcceeeEEecCCCeE----------------------EEecCCC
Confidence 98775421 11112222233334444444444444444443221 2234456
Q ss_pred CEEEEecCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE--EEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEE
Q 005254 549 QVVITASGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ--IVSCGADGLVKLWTVRTGECIATYDKHEDKIWAL 626 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 626 (706)
..++....++.+.+||..+++.+..+. +...+..++|+|||++ +++++.|+.|++||+.+++.+..+..+....+.|
T Consensus 289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l 367 (373)
T d2madh_ 289 SAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred ceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence 667778888999999999999998886 6678899999999985 4678899999999999999999999888777888
Q ss_pred EEcCC
Q 005254 627 AVGKK 631 (706)
Q Consensus 627 ~~s~~ 631 (706)
++.++
T Consensus 368 ~~~~~ 372 (373)
T d2madh_ 368 SVMNE 372 (373)
T ss_pred EEecC
Confidence 77543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.7e-20 Score=179.44 Aligned_cols=123 Identities=20% Similarity=0.123 Sum_probs=96.7
Q ss_pred EEEEEEccCCCEEEEEe-----ccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEec----------CCCcEE
Q 005254 63 ITALALSPDDKLLFSSG-----HSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAG----------ADRKVL 127 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~ 127 (706)
+...+.+|||+.+++.. .++.|.+||..+++++.++..+..+ .++|||||++|++.+ .++.|.
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence 34446789999988763 3567999999999999999876554 799999999888753 368899
Q ss_pred EEECCCCeEEEEeeCCCC-------cEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc
Q 005254 128 VWDVDGGFCTHYFKGHKG-------VVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH 187 (706)
Q Consensus 128 vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 187 (706)
+||..+++.+..+..+.. ....++|+|+++..+++..+.+..+.+|+..+++.+..+..+
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence 999999998887654332 235689999998855555567889999999999988877644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3.2e-20 Score=177.53 Aligned_cols=121 Identities=21% Similarity=0.127 Sum_probs=90.7
Q ss_pred CeEEEEECCCCCEEEEec-----CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE--------EecCCeE
Q 005254 104 PAIGMACHPSGGLLATAG-----ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--------GSDDATV 170 (706)
Q Consensus 104 ~v~~~~~s~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--------~~~dg~i 170 (706)
++...+.+||++++++.. .+..|.+||..+++.+..+..+..+ .++|+||++..+++. +..++.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 344446789999988753 3567999999999999988766554 699999998744332 3457899
Q ss_pred EEEECCCCeeEEEeecccc-------eEEEEEEecCCCEEEEEe--CCCEEEEEeCCCCcceeee
Q 005254 171 RVWDLLAKKCVATLDKHFS-------RVTSMAITSDGSTLISAG--RDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~dg~i~~w~~~~~~~~~~~ 226 (706)
++||..+++.+..+..+.. ....++|++++++++++. .+..+.+|+..+++....+
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 145 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence 9999999998887754332 234578999999888765 4568888998877655544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=6.8e-18 Score=159.55 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=104.6
Q ss_pred EEEEeccCeEEEEECCCCeE---EEEeeccCCCeEEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEE---eeCCCCcE
Q 005254 75 LFSSGHSREIRVWDLSTLKC---LRSWKGHDGPAIGMACHPSGGLLATA-GADRKVLVWDVDGGFCTHY---FKGHKGVV 147 (706)
Q Consensus 75 l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~---~~~~~~~v 147 (706)
+++++.++.|++|++.+... +..+ .|.+.+..|+|||||++|+++ ..|+.|.+|++........ ...+...+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 46667899999999975433 3333 478999999999999999655 4589999999976532222 22355667
Q ss_pred EEEEEcCCCCceEEEEEe-cCCeEEEEECCCCeeEEE--eecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCC
Q 005254 148 SSILFHPDTDKSLLFSGS-DDATVRVWDLLAKKCVAT--LDKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRD 219 (706)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~ 219 (706)
..++|+|||+. +++++ .++.|.+|+......... ...+...+.++.++|++++++.++. +..+.+|+...
T Consensus 86 ~~l~~spDg~~--l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 86 THISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp SEEEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eEEEEcCCCCE--EeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence 88999999886 66665 577899998876654433 3446667888999999998888774 45688887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.3e-17 Score=157.53 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=183.9
Q ss_pred ceEEEEEecCCeEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCcceeee
Q 005254 158 KSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTYEMVEA 234 (706)
Q Consensus 158 ~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~ 234 (706)
+.++++++.|++|++|++.+...+..+ ..|.+.+..++|+|||++|++++. ++.|.+|++...........
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~------ 77 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------ 77 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEee------
Confidence 456788889999999998765433333 357789999999999999976664 89999999875432211100
Q ss_pred EEeeCCCCCcccccccccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEcc
Q 005254 235 VCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLP 314 (706)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (706)
T Consensus 78 -------------------------------------------------------------------------------- 77 (333)
T d1ri6a_ 78 -------------------------------------------------------------------------------- 77 (333)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeEEEeeCCceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEe-cCCcEEEEeCCCceeeE--e
Q 005254 315 SNQGLLCVTADQQLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVAT-NIEQVQVYDLSSMSCSY--V 391 (706)
Q Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~i~~~d~~~~~~~~--~ 391 (706)
.......+..++++| ++++++++. .++.+.+|+........ .
T Consensus 78 ----------------------------------~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~ 122 (333)
T d1ri6a_ 78 ----------------------------------ESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122 (333)
T ss_dssp ----------------------------------EEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred ----------------------------------ecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceeccc
Confidence 000112233455555 444444444 45677777776554433 2
Q ss_pred eeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEE------EEeCCCcCeEEEEEecCCCeEEEEecCCCe
Q 005254 392 LAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVG------VGTGHMGAVGAVAFSKKLQNFLVSGSSDHT 465 (706)
Q Consensus 392 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 465 (706)
...+...+.++. ++++++.++.....+..+.+|+........ ...........++|++++.....+....+.
T Consensus 123 ~~~~~~~~~~v~--~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~ 200 (333)
T d1ri6a_ 123 VVEGLDGCHSAN--ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS 200 (333)
T ss_dssp EECCCTTBCCCE--ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred ccCCCccceEEE--eeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCc
Confidence 334445555665 889999866666677789999987643222 122345567889999999866677777888
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCCcEEEEeCCCccEEEE---EeecCCcEEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDRTACVWRLPDLVSVVT---FRGHKRGIWS 541 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~ 541 (706)
..+++.............................+++++++++++.. ..++.+.+|++........ .......+..
T Consensus 201 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 280 (333)
T d1ri6a_ 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG 280 (333)
T ss_dssp EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC
T ss_pred eEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeE
Confidence 88888764422111000000000001123456778999999877655 4567899998876543332 2334456788
Q ss_pred EEEccCCCEEEEec-CCCcEEEEEc--CCCce
Q 005254 542 VEFSPVDQVVITAS-GDKTIKIWSI--SDGSC 570 (706)
Q Consensus 542 ~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~ 570 (706)
++|+|||++|++++ .++.|++|++ .+|++
T Consensus 281 ~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 281 FNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 99999999887765 4688999954 56654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=9.7e-17 Score=158.97 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=106.0
Q ss_pred ceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecC-----CCccEEEEEEccCCCEEEEEec---------cCeEEEEEC
Q 005254 24 PLVVSSDGSFIACACGESINIVDLSNASIKSTIEG-----GSDTITALALSPDDKLLFSSGH---------SREIRVWDL 89 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~-----~~~~i~~l~~s~~~~~l~s~~~---------d~~i~iwd~ 89 (706)
.+.+.+|++++.. .++.|.+||+.+++....+.. |...|.++.|||||++|+.++. ++.+.|||+
T Consensus 21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 4889999987754 466899999999987665544 4578999999999999998753 568899999
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCC------------------CCcEEEEE
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGH------------------KGVVSSIL 151 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~------------------~~~v~~~~ 151 (706)
++++. ..+..|...+..+.|||||+++|... ++.+++|+..+++.......+ .+....+.
T Consensus 100 ~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 100 NKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 99875 55777899999999999999999965 678999999988765543221 12234566
Q ss_pred EcCCCCceEEEEEe
Q 005254 152 FHPDTDKSLLFSGS 165 (706)
Q Consensus 152 ~~~~~~~~~l~~~~ 165 (706)
|+|||+. ++...
T Consensus 178 wSPDGk~--ia~~~ 189 (470)
T d2bgra1 178 WSPNGTF--LAYAQ 189 (470)
T ss_dssp ECTTSSE--EEEEE
T ss_pred ECCCCCc--cceeE
Confidence 7777776 44443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.76 E-value=3.8e-16 Score=154.69 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=110.3
Q ss_pred EEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec-----cCCCeEEEEECCCCCEEEEecC---------CCcEEEEE
Q 005254 65 ALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG-----HDGPAIGMACHPSGGLLATAGA---------DRKVLVWD 130 (706)
Q Consensus 65 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~---------d~~i~vw~ 130 (706)
.+.|.++++++.. .++.+.+||+.+++....+.. |...|.++.|||||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 5789999988764 577899999999987765544 4578999999999999998753 46789999
Q ss_pred CCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecc------------------cceEE
Q 005254 131 VDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKH------------------FSRVT 192 (706)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~ 192 (706)
+++++. ..+..+...+..+.|||||+. ++. ..++.+.+|+..+++..+....+ .+...
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~--ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGHK--LAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTTC--EEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCcc-cccccCCccccccccccCcce--eeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 999874 557789999999999999997 655 45678999999888766543221 12345
Q ss_pred EEEEecCCCEEEEEeCCC
Q 005254 193 SMAITSDGSTLISAGRDK 210 (706)
Q Consensus 193 ~~~~~~~~~~l~~~~~dg 210 (706)
.+.|+|||++|+....|.
T Consensus 175 ~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp CEEECTTSSEEEEEEEEC
T ss_pred ccEECCCCCccceeEecC
Confidence 678999999999886543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=7.3e-16 Score=147.09 Aligned_cols=124 Identities=14% Similarity=-0.032 Sum_probs=89.4
Q ss_pred cCCCeEEEEECCCCCEEEE---ecCC--CcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEE--------EecC
Q 005254 101 HDGPAIGMACHPSGGLLAT---AGAD--RKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFS--------GSDD 167 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~---~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--------~~~d 167 (706)
+.++...++..++++.... ...+ ..|.+||..+++.+..+..+... .++|+||++..+++. |..|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 4455556677888885432 2333 45778899999999888877665 589999998733333 2347
Q ss_pred CeEEEEECCCCeeEEEeecccc-------eEEEEEEecCCCEEEEEe-CCCEEEEEeCCCCcceeee
Q 005254 168 ATVRVWDLLAKKCVATLDKHFS-------RVTSMAITSDGSTLISAG-RDKVVNLWDLRDYSCKLTV 226 (706)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~dg~i~~w~~~~~~~~~~~ 226 (706)
+.|.+||..+++.+..+..+.. ....++|+|||++|+++. .++.+.+||+.+++....+
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe
Confidence 8899999999999888764432 234689999999998876 5688999998877655443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.68 E-value=1.3e-16 Score=148.77 Aligned_cols=308 Identities=13% Similarity=0.090 Sum_probs=202.3
Q ss_pred EEEEeccCeEEEEECCCCeEEEEeec------------------------------cCCCeEEEEECCCCCEEEEe-cCC
Q 005254 75 LFSSGHSREIRVWDLSTLKCLRSWKG------------------------------HDGPAIGMACHPSGGLLATA-GAD 123 (706)
Q Consensus 75 l~s~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~~~~l~~~-~~d 123 (706)
+++++.+|.|.+|++.+++.+.++.. |........++|||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45677899999999999998887532 22334555568999999766 467
Q ss_pred CcEEEEECCCCeEEEEee-CCCCcEEEEEEcCCCCceEEEEEecCC-----------------eEEEEECCCCeeEEEee
Q 005254 124 RKVLVWDVDGGFCTHYFK-GHKGVVSSILFHPDTDKSLLFSGSDDA-----------------TVRVWDLLAKKCVATLD 185 (706)
Q Consensus 124 ~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg-----------------~i~vwd~~~~~~~~~~~ 185 (706)
..|.++|+++++....+. .+...+..++|+|+++..+++..+.+. .+..+|..+.+...++.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999999887765 367789999999999887777766543 24568888888777765
Q ss_pred cccceEEEEEEecCCCEEEEEeCCCE-EEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccc
Q 005254 186 KHFSRVTSMAITSDGSTLISAGRDKV-VNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLE 264 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
.. +....+.|+|+|+++++.+.+.. +..++..+....
T Consensus 174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~----------------------------------------- 211 (441)
T d1qnia2 174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR----------------------------------------- 211 (441)
T ss_dssp ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB-----------------------------------------
T ss_pred cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceE-----------------------------------------
Confidence 43 45788999999999998876531 111111110000
Q ss_pred eEEEEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeE
Q 005254 265 IHFITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELI 344 (706)
Q Consensus 265 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (706)
T Consensus 212 -------------------------------------------------------------------------------- 211 (441)
T d1qnia2 212 -------------------------------------------------------------------------------- 211 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEE
Q 005254 345 LSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVR 424 (706)
Q Consensus 345 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~ 424 (706)
..+.+.+.. .... +.++++. +.. +.++.+.
T Consensus 212 -------------------------------d~i~v~n~p---------------~~~~--~~~dGk~-~~v-~~~~v~v 241 (441)
T d1qnia2 212 -------------------------------DWVVVFNVE---------------RIAA--AVKAGNF-KTI-GDSKVPV 241 (441)
T ss_dssp -------------------------------CEEEEEEHH---------------HHHH--HHHTTCC-BCC-TTCCCCE
T ss_pred -------------------------------EEEEeCCcc---------------ceEE--EecCCCE-EEe-CCCCcEE
Confidence 000000000 0001 3444543 222 3355666
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc-eeEEEeecCcceEEEEEc
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK-AKAVVAAHGKDINSLAVA 503 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s 503 (706)
+++......+..+.... ....+.++|||+.+++++..++++.+||+.......+...... .........-.....+|.
T Consensus 242 vd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd 320 (441)
T d1qnia2 242 VDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD 320 (441)
T ss_dssp EECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC
T ss_pred EEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec
Confidence 77666666666666544 3578999999997788899999999999875321111111111 111111222334567899
Q ss_pred CCCCEEEEeeCCCcEEEEeCCC----------ccEEEEE-----eecCCcEEEEEEccCCCEEEEec
Q 005254 504 PNDSLVCTGSQDRTACVWRLPD----------LVSVVTF-----RGHKRGIWSVEFSPVDQVVITAS 555 (706)
Q Consensus 504 ~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~ 555 (706)
++|..+.+.+.|..|..|++.. ...+..+ .+|...+.+.+++|||++|++++
T Consensus 321 ~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 321 GRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred CCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 9999999999999999999741 1233334 46766677778999999999994
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=1.1e-15 Score=145.79 Aligned_cols=203 Identities=8% Similarity=-0.012 Sum_probs=129.4
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
++|+++.++++...++.+.+||+.+++.......+.... +.+.++..++..+.||.+.++++..........
T Consensus 131 ~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~---- 202 (368)
T d1mdah_ 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIV---- 202 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEEC----
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeee----
Confidence 667777755554567788888888887777765544332 233334466777778888887776543211100
Q ss_pred eeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--e----------cCCcEEEEEEccCCCEEEE
Q 005254 486 AKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--G----------HKRGIWSVEFSPVDQVVIT 553 (706)
Q Consensus 486 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----------~~~~v~~~~~s~~~~~l~~ 553 (706)
.......+...+....+.+++..+... ++.+++++........... . .......+++++++..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v 280 (368)
T d1mdah_ 203 GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence 001111233344556777777665543 4556677765554332211 1 1112235788999887766
Q ss_pred ecCC---------CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCE--EEEEeCCCCEEEEECCCCeEEEEeccC
Q 005254 554 ASGD---------KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQ--IVSCGADGLVKLWTVRTGECIATYDKH 619 (706)
Q Consensus 554 ~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~ 619 (706)
...+ ..|.+||..+++.+..+. +...+..++|+|||+. ++++..|+.|++||..+++.+..++..
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g 356 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence 5322 359999999999888876 4467888999999973 456677899999999999999998753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.61 E-value=3.3e-14 Score=132.54 Aligned_cols=257 Identities=12% Similarity=0.070 Sum_probs=175.3
Q ss_pred EEEEecCCcEEEEeCCCceeeEeeeC------------------------------CcceEEEeeeeeecCCCEEEEEee
Q 005254 369 LAVATNIEQVQVYDLSSMSCSYVLAG------------------------------HSEIVLCLDTCALSSGKILIVTGS 418 (706)
Q Consensus 369 l~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------~~~~i~~~~~~~~~~~~~~l~~~~ 418 (706)
+++++.+|++.+|++.+++.+..+.- |........ ..|+++++++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~--gtpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTD--GRYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEET--TEEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceec--ccCCCCEEEEEcC
Confidence 55667899999999999887776532 222333343 5688999778888
Q ss_pred CCCcEEEEeCCCceEEEEEe-CCCcCeEEEEEecCCCeEEEEecCCCeEE------------------EEEecCCCCCCC
Q 005254 419 KDNSVRLWDSESRCCVGVGT-GHMGAVGAVAFSKKLQNFLVSGSSDHTIK------------------VWSFDGLSDDAE 479 (706)
Q Consensus 419 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~------------------i~~~~~~~~~~~ 479 (706)
.+.+|.++|+.+++....+. .+...+..++|+|+++...+++..+..+. .+|..+..
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~---- 167 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD---- 167 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS----
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce----
Confidence 89999999999999887765 45678999999999885444443333332 23332211
Q ss_pred cccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-----------------------------------------CcE
Q 005254 480 QPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-----------------------------------------RTA 518 (706)
Q Consensus 480 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------------------------------------g~i 518 (706)
...... -......++++|+|+++++.+.+ +.+
T Consensus 168 ------v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~ 240 (441)
T d1qnia2 168 ------VAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP 240 (441)
T ss_dssp ------EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred ------eeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence 112222 23457789999999998887654 234
Q ss_pred EEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-EecCCCcEEEEEcCCCce--------EEEEeecc---cCEEEEEE
Q 005254 519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASGDKTIKIWSISDGSC--------LKTFEGHT---SSVLRASF 586 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~--------~~~~~~~~---~~i~~~~~ 586 (706)
.+++....+.+..+..... ...+.++|||++++ ++..+++|.|||+.+... ...+.++. -.....+|
T Consensus 241 vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f 319 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF 319 (441)
T ss_dssp EEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred EEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence 4444455555666665444 56799999999875 567799999999865321 11111111 13456789
Q ss_pred EeCCCEEEEEeCCCCEEEEECCC----------CeEEEEe-----ccCCCcEEEEEEcCCCCEEEEEe
Q 005254 587 LTRGAQIVSCGADGLVKLWTVRT----------GECIATY-----DKHEDKIWALAVGKKTEMFATGG 639 (706)
Q Consensus 587 s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~ 639 (706)
.++|..+.+...|..|..|++.. ...+..+ .+|...+.+.+++|||+||++++
T Consensus 320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 99998888899999999999741 1244444 36766677778999999999994
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=3e-10 Score=100.83 Aligned_cols=236 Identities=8% Similarity=-0.037 Sum_probs=152.0
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
...++ ..+++..+++.....+.+..++...................+++++++. +.++....+.+++++-....
T Consensus 16 P~~va--vd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~--- 89 (260)
T d1rwia_ 16 PSGVA--VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ--- 89 (260)
T ss_dssp EEEEE--ECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC---
T ss_pred CCEEE--EcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccce---
Confidence 34555 7788877555566667777777665443333223334567899999986 66666666666655432211
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDK 558 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 558 (706)
.............+++.++++++++-..+..+..++...................++++++++.+++...++
T Consensus 90 --------~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~ 161 (260)
T d1rwia_ 90 --------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN 161 (260)
T ss_dssp --------EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT
T ss_pred --------eeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccc
Confidence 111111224568899999999888776677788887655443332222334567899999999888888888
Q ss_pred cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
.|..+|...................+++.++|+++++....+.|..++.............-.....|+++++|.++++-
T Consensus 162 ~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 162 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred cccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence 99999976554433222344567889999999888888778888888875543222222333567899999999887776
Q ss_pred eCCCcEEEEE
Q 005254 639 GSDALVNLWH 648 (706)
Q Consensus 639 ~~dg~i~vw~ 648 (706)
..++.|+..+
T Consensus 242 ~~~~rI~~i~ 251 (260)
T d1rwia_ 242 RGNDRVVKLT 251 (260)
T ss_dssp GGGTEEEEEC
T ss_pred CCCCEEEEEe
Confidence 6666555443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=1e-08 Score=95.79 Aligned_cols=159 Identities=8% Similarity=0.086 Sum_probs=104.9
Q ss_pred CcceEEEEEcCCCCEEEEeeC-CCcEEEEeCCCc-cEE--EEEe--ecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcC
Q 005254 494 GKDINSLAVAPNDSLVCTGSQ-DRTACVWRLPDL-VSV--VTFR--GHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSIS 566 (706)
Q Consensus 494 ~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~-~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 566 (706)
...+.++.|+|||+++++++. ...|.+|+.... ... .... ........++|+|+++++++.. .+++|.+|++.
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 345789999999998888764 346888876543 222 1222 2346789999999999886555 57889999987
Q ss_pred CCceEEEE--ee-----------------cccCEEEEEEEeCCCEEEEEeC------CCCEEEEECCCC-eEEE-----E
Q 005254 567 DGSCLKTF--EG-----------------HTSSVLRASFLTRGAQIVSCGA------DGLVKLWTVRTG-ECIA-----T 615 (706)
Q Consensus 567 ~~~~~~~~--~~-----------------~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~-~~~~-----~ 615 (706)
.++..... .. +......+.++|||++|+++.. .+.|..|++... .... .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 66432221 10 1123567899999999987643 123777777543 2211 1
Q ss_pred eccCCCcEEEEEEcC-CCCEEEEE-eCCCcEEEEECCch
Q 005254 616 YDKHEDKIWALAVGK-KTEMFATG-GSDALVNLWHDSTA 652 (706)
Q Consensus 616 ~~~~~~~v~~~~~s~-~~~~l~~~-~~dg~i~vw~~~~~ 652 (706)
..........++++| +|++|+++ ..++.|.+|+++..
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 112234456799998 78987766 56799999988654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.1e-08 Score=98.65 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=95.6
Q ss_pred EEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec---cCCCeEEEEECCCCCEEEEec---------CCCcEEEEECCC
Q 005254 66 LALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG---HDGPAIGMACHPSGGLLATAG---------ADRKVLVWDVDG 133 (706)
Q Consensus 66 l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~---------~d~~i~vw~~~~ 133 (706)
..|.+++.++.. ..+|.|.+||+.+++....+.. ....+....||||+++++... ..+.+.++|+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 357888877653 4578899999998876444443 234677889999999988764 346789999998
Q ss_pred CeEEEEe--eCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec-ccc-----------------eEEE
Q 005254 134 GFCTHYF--KGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK-HFS-----------------RVTS 193 (706)
Q Consensus 134 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~-----------------~v~~ 193 (706)
++..... ......+....|||||+. +|-. .++.|.+.+..++...+.... ..+ .-.+
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~--iafv-~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQ--LIFI-FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTC--EEEE-ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CceeeccCccCCccccceeeeccCCce--EEEE-ecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 8754332 223445667899999997 4443 366788888877765544321 111 1246
Q ss_pred EEEecCCCEEEEEe
Q 005254 194 MAITSDGSTLISAG 207 (706)
Q Consensus 194 ~~~~~~~~~l~~~~ 207 (706)
+.|||||++|+...
T Consensus 178 ~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 178 HWWSPDGTRLAYAA 191 (465)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEECCCCCeEEEEE
Confidence 78999999998875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.19 E-value=7e-08 Score=89.91 Aligned_cols=151 Identities=10% Similarity=0.028 Sum_probs=78.2
Q ss_pred EEEEccCCeEE--Eee-cCCCccEEEEEEccCCCEEEEEeccCeEEEEECCC-CeEEEEe-eccCCCeEEEEECCCCCEE
Q 005254 43 NIVDLSNASIK--STI-EGGSDTITALALSPDDKLLFSSGHSREIRVWDLST-LKCLRSW-KGHDGPAIGMACHPSGGLL 117 (706)
Q Consensus 43 ~i~d~~~~~~~--~~l-~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l 117 (706)
..+|.++++.. ... ......+.-|+|+|++++|.++.. +.+..|.+.. +...... .........++++++++.+
T Consensus 19 ~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~ 97 (365)
T d1jofa_ 19 VQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI 97 (365)
T ss_dssp EEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE
T ss_pred EEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEE
Confidence 34565666532 222 224455678999999999988764 4677776653 3332222 2233445678888988854
Q ss_pred EEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 118 ATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 118 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
.....+ .+...|....+.+++....+......+.+ .. .....-+.....+.++.|+
T Consensus 98 ~v~~a~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~q~~~h~h~v~~s 153 (365)
T d1jofa_ 98 FLLAAK------------------QPPYAVYANPFYKFAGYGNVFSVSETGKL--EK----NVQNYEYQENTGIHGMVFD 153 (365)
T ss_dssp EEEECS------------------STTCCEEEEEESSSCCEEEEEEECTTCCE--EE----EEEEEECCTTCCEEEEEEC
T ss_pred EEEEec------------------CCCCEEEEeEccCCCCcceeEeeeeccee--cC----cccCcccCCCCcceEEEEC
Confidence 332211 02223333344443332111111111111 10 0011111223457899999
Q ss_pred cCCCEEEEEeC-CCEEEEEeCC
Q 005254 198 SDGSTLISAGR-DKVVNLWDLR 218 (706)
Q Consensus 198 ~~~~~l~~~~~-dg~i~~w~~~ 218 (706)
|||++++++.. ...|.+|+..
T Consensus 154 PdG~~l~v~d~g~d~v~~~~~~ 175 (365)
T d1jofa_ 154 PTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEeeCCCCEEEEEEcc
Confidence 99999888864 3467776643
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=5.6e-08 Score=86.90 Aligned_cols=235 Identities=12% Similarity=0.179 Sum_probs=162.2
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC------CCcCeEEEEEecCCCeEEE-EecCCCeEEEEEe
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTG------HMGAVGAVAFSKKLQNFLV-SGSSDHTIKVWSF 471 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~~~ 471 (706)
...++ ..++++. +++-..+..|++||.+ ++.+..+.. .......+++.++....++ ..+.++.|..++.
T Consensus 25 P~gva--vd~dg~i-~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 25 PSGVA--VNAQNDI-IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp EEEEE--ECTTCCE-EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ccEEE--EcCCCCE-EEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 45555 6677665 6666677889999865 555555432 1123445666655443444 3445567777665
Q ss_pred cCCCCCCCcccccceeEEE-eecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEe--ecCCcEEEEEEccCC
Q 005254 472 DGLSDDAEQPMNLKAKAVV-AAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFR--GHKRGIWSVEFSPVD 548 (706)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~s~~~ 548 (706)
... ..... .........+++.++|+++++....+.+.+++. +++.+..+. .+......+++.+++
T Consensus 101 ~g~-----------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 101 YGQ-----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp TSC-----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred ccc-----------ceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce
Confidence 432 11111 123345678999999998888887888888885 455666553 355678899999999
Q ss_pred CEEEEecCCCcEEEEEcCCCceEEEEe--ecccCEEEEEEEeCCCEEEEEeC-CCCEEEEECCCCeEEEEeccC--CCcE
Q 005254 549 QVVITASGDKTIKIWSISDGSCLKTFE--GHTSSVLRASFLTRGAQIVSCGA-DGLVKLWTVRTGECIATYDKH--EDKI 623 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~v 623 (706)
+.+++....+.|++||. +++.+.++. +.......+++.++|+.+++-.. ++.|.+|+ .+|+.+..+... ....
T Consensus 169 ~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p 246 (279)
T d1q7fa_ 169 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQC 246 (279)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCE
T ss_pred eEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCE
Confidence 99888888999999996 577777763 23446788999999997776543 45799998 478888777532 3457
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCch
Q 005254 624 WALAVGKKTEMFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 624 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 652 (706)
..|++.+||.+++ ++.+..|++|+....
T Consensus 247 ~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 247 FDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred eEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 8999999997555 567899999998654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.19 E-value=2.5e-08 Score=90.48 Aligned_cols=237 Identities=11% Similarity=0.063 Sum_probs=150.3
Q ss_pred eecCCCEEEEEee------CCCcEEEEeCCCceEEEEEeC----CCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCC
Q 005254 406 ALSSGKILIVTGS------KDNSVRLWDSESRCCVGVGTG----HMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLS 475 (706)
Q Consensus 406 ~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 475 (706)
+.++++.+++... .+++|..||..++........ ..+....+++.+++. .++++...+.+..++.....
T Consensus 25 ~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~-~l~vad~~~~i~~~~~~g~~ 103 (314)
T d1pjxa_ 25 FDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLLVVQTDGTF 103 (314)
T ss_dssp ECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEEEEETTSCE
T ss_pred EeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC-EEEEEECCCeEEEEeCCCcE
Confidence 6777776444322 246799999888765544332 223466899999987 55555555667777765431
Q ss_pred CCCCcccccceeEEEee-cCcceEEEEEcCCCCEEEEeeC---------------CCcEEEEeCCCccEEEEEeecCCcE
Q 005254 476 DDAEQPMNLKAKAVVAA-HGKDINSLAVAPNDSLVCTGSQ---------------DRTACVWRLPDLVSVVTFRGHKRGI 539 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v 539 (706)
..... ....+ .-...+.+++.++|++.++-.. .|.|..++. .++... +...-...
T Consensus 104 ~~~~~-------~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~-~~~~~~~p 174 (314)
T d1pjxa_ 104 EEIAK-------KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ-VDTAFQFP 174 (314)
T ss_dssp EECCS-------BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE-EEEEESSE
T ss_pred EEEEe-------ccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeE-eeCCccee
Confidence 00000 00000 0113577999999988876432 233444443 233333 23333445
Q ss_pred EEEEEccCCC-----EEEEecCCCcEEEEEcCCCceEEE------Eee-cccCEEEEEEEeCCCEEEEEeCCCCEEEEEC
Q 005254 540 WSVEFSPVDQ-----VVITASGDKTIKIWSISDGSCLKT------FEG-HTSSVLRASFLTRGAQIVSCGADGLVKLWTV 607 (706)
Q Consensus 540 ~~~~~s~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~------~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 607 (706)
..++|+|++. +.++-+..+.|..||+.....+.. +.+ +....-.+++..+|+..++....+.|.+||.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 7899999764 445556788899998764433221 111 1223567899999998888888899999999
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCch
Q 005254 608 RTGECIATYDKHEDKIWALAVGKKTE-MFATGGSDALVNLWHDSTA 652 (706)
Q Consensus 608 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~ 652 (706)
..++.+..+..+....++++|.||++ +.+|.+.+|.|...++...
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 88887777777667889999999987 4566677888887776543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2e-08 Score=89.88 Aligned_cols=212 Identities=16% Similarity=0.088 Sum_probs=135.1
Q ss_pred ceEEcCCCCEEEEeeCC----eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-cC--eEEEEECCCCeEEE
Q 005254 24 PLVVSSDGSFIACACGE----SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-SR--EIRVWDLSTLKCLR 96 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~~----~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d~--~i~iwd~~~~~~~~ 96 (706)
.-+|||||+.||+.... .+.+.+..++... .+..+...+....|||+|+.++.... ++ .+..+.........
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~ 121 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 121 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccccccccee
Confidence 57899999999998654 4888887777654 45557788899999999999887643 32 23333333333333
Q ss_pred EeeccCCCeEEEEECCCCCEEEEec-CCC--cEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEE
Q 005254 97 SWKGHDGPAIGMACHPSGGLLATAG-ADR--KVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVW 173 (706)
Q Consensus 97 ~~~~~~~~v~~~~~s~~~~~l~~~~-~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 173 (706)
............++++++.++..+ .++ .|.+.++..+... .+..+........|+|+++. +++.....+...+|
T Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~i~ 198 (269)
T d2hqsa1 122 -VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKF-MVMVSSNGGQQHIA 198 (269)
T ss_dssp -CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSE-EEEEEECSSCEEEE
T ss_pred -eeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccccccccccce-eEEEeecCCceeee
Confidence 333445556677888887665543 333 5666676665433 33446677888999999876 33334444555555
Q ss_pred ECCCCeeEEEeecccceEEEEEEecCCCEEEEEeC---CCEEEEEeCCCCcceeeecCcceeeeEEeeC
Q 005254 174 DLLAKKCVATLDKHFSRVTSMAITSDGSTLISAGR---DKVVNLWDLRDYSCKLTVPTYEMVEAVCAIP 239 (706)
Q Consensus 174 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 239 (706)
..........+..+........|+|||+.|+..+. ...|.+++++.+...........+....++|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 199 KQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred EeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 43322222233345556677899999998876553 3478899998776554444444444555554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=1e-08 Score=90.69 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=129.3
Q ss_pred cceEEcCCCCEEEEeeCC--eEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 23 GPLVVSSDGSFIACACGE--SINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
..|++++||++.++.... .|..++..+........+.......++++++|++.++....+.+++++-.++..+....+
T Consensus 17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~ 96 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG 96 (260)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS
T ss_pred CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee
Confidence 369999999977665433 566665544333222222223457899999999877776676777776666555544432
Q ss_pred cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCee
Q 005254 101 HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKC 180 (706)
Q Consensus 101 ~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 180 (706)
......+++.++++++++-..+..+..++...................+++.++++ ++++...++.|..++......
T Consensus 97 -~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 97 -LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp -CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC--EEEEEGGGTEEEEECTTTCCE
T ss_pred -eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC--Eeeecccccccccccccccee
Confidence 35678999999999887766667777777665443322222234557899999776 367777788899999765544
Q ss_pred EEEeecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 181 VATLDKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 181 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
.............+++.++|+++++....+.|..++....
T Consensus 174 ~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 174 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 4333344566789999999988777777888888876544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.5e-08 Score=94.95 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=95.9
Q ss_pred eEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCC---CccEEEEEEccCCCEEEEEe---------ccCeEEEEECCCC
Q 005254 25 LVVSSDGSFIACACGESINIVDLSNASIKSTIEGG---SDTITALALSPDDKLLFSSG---------HSREIRVWDLSTL 92 (706)
Q Consensus 25 ~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~---~~~i~~l~~s~~~~~l~s~~---------~d~~i~iwd~~~~ 92 (706)
..+.+|+.++....++.|.+||+.+++....+..+ ...+....||||+++|+... ..+.+.++|++++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 56788988877666678999999988765445443 33677889999999988764 3578999999988
Q ss_pred eEEEEe--eccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-CCCCc-----------------EEEEEE
Q 005254 93 KCLRSW--KGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-GHKGV-----------------VSSILF 152 (706)
Q Consensus 93 ~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~-----------------v~~~~~ 152 (706)
...... ......+....|||||+.||... ++.|.+.+..++..++... +.... -..+.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 754432 22345566789999999999876 5789988887776554332 11111 257789
Q ss_pred cCCCCc
Q 005254 153 HPDTDK 158 (706)
Q Consensus 153 ~~~~~~ 158 (706)
||||+.
T Consensus 181 SPDgk~ 186 (465)
T d1xfda1 181 SPDGTR 186 (465)
T ss_dssp CTTSSE
T ss_pred CCCCCe
Confidence 999987
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.5e-07 Score=84.01 Aligned_cols=237 Identities=11% Similarity=0.046 Sum_probs=148.8
Q ss_pred cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC--cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCC
Q 005254 377 QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN--SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQ 454 (706)
Q Consensus 377 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (706)
.|.+.|...........+ ...+.... ++|+++.+.++....+ .+.+.+...+... .+..+........|+|+++
T Consensus 20 ~l~i~d~dG~~~~~l~~~-~~~~~sP~--wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRS-PQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EEEEEETTSCSCEEEEEE-SSCEEEEE--ECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSS
T ss_pred EEEEEcCCCCCcEEEecC-CCceeeeE--ECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCC
Confidence 577777765444444333 34444555 9999999555554444 3556666655543 4455678888999999999
Q ss_pred eEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-eCCC--cEEEEeCCCccEEEE
Q 005254 455 NFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG-SQDR--TACVWRLPDLVSVVT 531 (706)
Q Consensus 455 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~ 531 (706)
.++.....++...++....... ................+++++..+... ..+| .|...++..+... .
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~ 165 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASG---------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-R 165 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTC---------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-E
T ss_pred eeeEeeecCCccceeecccccc---------cceeeeeccccccccccccccccceecccccCCceEeeeecccccce-e
Confidence 7666666666555555443321 122222233344455677777655544 3444 4555666555433 3
Q ss_pred EeecCCcEEEEEEccCCCEEEEecCCC-c--EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC---CCEEEE
Q 005254 532 FRGHKRGIWSVEFSPVDQVVITASGDK-T--IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD---GLVKLW 605 (706)
Q Consensus 532 ~~~~~~~v~~~~~s~~~~~l~~~~~dg-~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iw 605 (706)
+..+........|+|+++.++..+.++ . +.+.+...+.. ....+........|||||++|+..+.. ..|+++
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~ 243 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV 243 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred eecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence 344566777889999999888765543 3 44555544433 333355566788999999998766543 468899
Q ss_pred ECCCCeEEEEeccCCCcEEEEEEcC
Q 005254 606 TVRTGECIATYDKHEDKIWALAVGK 630 (706)
Q Consensus 606 d~~~~~~~~~~~~~~~~v~~~~~s~ 630 (706)
++..+.. ..+....+.+...+|||
T Consensus 244 ~~dg~~~-~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 244 STDGRFK-ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp ETTSCCE-EECCCSSSEEEEEEECC
T ss_pred ECCCCCE-EEEeCCCCcEEeEEeCC
Confidence 9976654 45666677888899998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.10 E-value=1.6e-07 Score=84.96 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=154.8
Q ss_pred EEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCC
Q 005254 399 VLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDA 478 (706)
Q Consensus 399 i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 478 (706)
+..++ +.++++. +++...+++|..++..... ..+......+.+++++++|. ++++...++.+..++........
T Consensus 30 ~e~iA--v~pdG~l-~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 30 LENLA--SAPDGTI-FVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp EEEEE--ECTTSCE-EEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCE
T ss_pred cCCEE--ECCCCCE-EEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccce
Confidence 45565 7788875 8888889999999866442 33444567889999999987 77877788888888876542111
Q ss_pred CcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee----------cCCcEEEEEEccCC
Q 005254 479 EQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG----------HKRGIWSVEFSPVD 548 (706)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~v~~~~~s~~~ 548 (706)
..............+++.++++++++.+.++.+..++...+........ .......+.++. +
T Consensus 104 -------~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~ 175 (302)
T d2p4oa1 104 -------ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-N 175 (302)
T ss_dssp -------EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-T
T ss_pred -------eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-C
Confidence 1111222445678899999999999888889999999887754443322 112345666654 3
Q ss_pred CEEEEecCCCcEEEEEcCCCceEE--EEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeE--EEEeccCCCcEE
Q 005254 549 QVVITASGDKTIKIWSISDGSCLK--TFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGEC--IATYDKHEDKIW 624 (706)
Q Consensus 549 ~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~ 624 (706)
.++++.+..+.|..+++....... ...........+++.++|+++++...++.|..++.. ++. +..........+
T Consensus 176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt 254 (302)
T d2p4oa1 176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST 254 (302)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCce
Confidence 455666778889988876543221 111123445678999999988888889999999875 443 333334455689
Q ss_pred EEEE---cCCCCEEEEEeCC
Q 005254 625 ALAV---GKKTEMFATGGSD 641 (706)
Q Consensus 625 ~~~~---s~~~~~l~~~~~d 641 (706)
+++| ++|++.|..++..
T Consensus 255 ~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 255 AVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEECCSTTTTTEEEEEECT
T ss_pred EEEEcCCCCCCCEEEEECCC
Confidence 9999 6788877655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.08 E-value=4.1e-07 Score=81.07 Aligned_cols=230 Identities=12% Similarity=0.212 Sum_probs=156.5
Q ss_pred cceEEcCCCCEEEEeeCC-eEEEEEccCCeEEEeecC------CCccEEEEEEccCC-CEEEEE-eccCeEEEEECCCCe
Q 005254 23 GPLVVSSDGSFIACACGE-SINIVDLSNASIKSTIEG------GSDTITALALSPDD-KLLFSS-GHSREIRVWDLSTLK 93 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~~-~i~i~d~~~~~~~~~l~~------~~~~i~~l~~s~~~-~~l~s~-~~d~~i~iwd~~~~~ 93 (706)
..|++++||+++++-.++ .|++||.. ++.+..+.. ....-..+++.++. .++++. +.++.|..++. .++
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~ 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence 459999999977765444 89999954 666655521 12234567766654 444443 34567777775 566
Q ss_pred EEEEeec-cCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee--CCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 94 CLRSWKG-HDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--GHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 94 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
....+.. .......+++.+++.++++....+.+.+++.+ ++.+..+. .+......+++.+++. ++++....+.|
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~--i~v~d~~~~~V 180 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE--IFISDNRAHCV 180 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE--EEEEEGGGTEE
T ss_pred ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee--EEeeeccccce
Confidence 6666643 44667899999999988887777888888865 55555553 4566788899988754 47777888999
Q ss_pred EEEECCCCeeEEEee--cccceEEEEEEecCCCEEEEEeC-CCEEEEEeCCCCcceeeecCc---ceeeeEEeeCCCCCc
Q 005254 171 RVWDLLAKKCVATLD--KHFSRVTSMAITSDGSTLISAGR-DKVVNLWDLRDYSCKLTVPTY---EMVEAVCAIPPGSAF 244 (706)
Q Consensus 171 ~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 244 (706)
.+||. +++.+.++. +.......+++.++|+.+++-.. ++.|.+|+. +++.+..+... .....+++.+++
T Consensus 181 ~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG--- 255 (279)
T d1q7fa_ 181 KVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG--- 255 (279)
T ss_dssp EEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT---
T ss_pred eeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC---
Confidence 99996 566666662 34456789999999986666443 457999984 56655554322 234556666665
Q ss_pred ccccccccchhhhccccccceEEEEecCCCeEEEEECCC
Q 005254 245 DSFLSSYNQQTIKKKRRSLEIHFITVGERGIVRMWNADS 283 (706)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 283 (706)
.++..+.+..|++|....
T Consensus 256 ---------------------~l~V~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 256 ---------------------SVVLASKDYRLYIYRYVQ 273 (279)
T ss_dssp ---------------------EEEEEETTTEEEEEECSC
T ss_pred ---------------------cEEEEeCCCeEEEEEeee
Confidence 355556788899988654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.08 E-value=3.5e-07 Score=82.78 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=143.8
Q ss_pred EEEEEEccCCCEEEEEec-------cCeEEEEECCCCeEEEEeecc----CCCeEEEEECCCCCEEEEecCCCcEEEEEC
Q 005254 63 ITALALSPDDKLLFSSGH-------SREIRVWDLSTLKCLRSWKGH----DGPAIGMACHPSGGLLATAGADRKVLVWDV 131 (706)
Q Consensus 63 i~~l~~s~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~ 131 (706)
...++|.|+|++.++... +|.|..||.+++......... .+.-..++|++++..|+++...+.|...+.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 466899999998776432 467999999887654433221 234578999999998888877777899998
Q ss_pred CCCeEEEEeeCCCC----cEEEEEEcCCCCceEEEEEec---------------CCeEEEEECCCCeeEEEeecccceEE
Q 005254 132 DGGFCTHYFKGHKG----VVSSILFHPDTDKSLLFSGSD---------------DATVRVWDLLAKKCVATLDKHFSRVT 192 (706)
Q Consensus 132 ~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~v~ 192 (706)
+.+..........+ ....+++.++|.. .++-.. .|.|..++. .++... +.......+
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~l--yvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~-~~~~~~~pN 175 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNL--WITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ-VDTAFQFPN 175 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCE--EEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE-EEEEESSEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCE--EEecCccCcccccccceeccCCceEEEEee-cCceeE-eeCCcceee
Confidence 76653322222221 2577899998763 343211 234444443 233222 222233446
Q ss_pred EEEEecCCC----EEEE-EeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 193 SMAITSDGS----TLIS-AGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 193 ~~~~~~~~~----~l~~-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
.++|++++. .|++ -+..+.|..|++.....+....
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~---------------------------------------- 215 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK---------------------------------------- 215 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE----------------------------------------
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceee----------------------------------------
Confidence 777877654 3333 3445666666543211100000
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
...
T Consensus 216 -----------------------------------------------------------------------------~~~ 218 (314)
T d1pjxa_ 216 -----------------------------------------------------------------------------VWG 218 (314)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 000
Q ss_pred Eecc-cCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEE
Q 005254 348 RLVG-YNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLW 426 (706)
Q Consensus 348 ~~~~-~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~ 426 (706)
.+.. .....-.+++.. ++++.++....+.|.+||...+.....+........+++ +.++++.++++.+.++.|..+
T Consensus 219 ~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~a--fg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 219 HIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH--FKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp ECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE--ECTTSSEEEEEETTTTEEEEE
T ss_pred EccccccccceeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEE--EeCCCCEEEEEECCCCcEEEE
Confidence 0000 011122344433 556666666678999999988877766766666677777 788888778888888888888
Q ss_pred eCCC
Q 005254 427 DSES 430 (706)
Q Consensus 427 d~~~ 430 (706)
++..
T Consensus 296 ~~~~ 299 (314)
T d1pjxa_ 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 7653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=1.1e-07 Score=86.26 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCe
Q 005254 90 STLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDAT 169 (706)
Q Consensus 90 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 169 (706)
...+.+..+.. ...+..++++|||+++++...+++|..|+.+.. ...+......+.+++|.++++. +++...++.
T Consensus 16 ~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l--~v~~~~~~~ 90 (302)
T d2p4oa1 16 APAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDL--VATGWNADS 90 (302)
T ss_dssp CCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCE--EEEEECTTS
T ss_pred CcccEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCe--EEEecCCce
Confidence 34455566653 246889999999999999888999988886644 2334456788999999999874 777777888
Q ss_pred EEEEECCCCe--eEEEe-ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCC
Q 005254 170 VRVWDLLAKK--CVATL-DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDY 220 (706)
Q Consensus 170 i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~ 220 (706)
+..|+..... ..... .........+++.++++++++...++.+..++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 8888765432 22111 123456788899999987777777777777776543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.97 E-value=1.4e-06 Score=79.15 Aligned_cols=202 Identities=12% Similarity=0.005 Sum_probs=132.3
Q ss_pred ceEEcCCCCEEEEeeC-CeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec----cCeEEEEECCCCeEEEEe
Q 005254 24 PLVVSSDGSFIACACG-ESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH----SREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~~-~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~ 98 (706)
.++|.++|++.++-.. +.|+.|+..+++....+.........+++++||+++++... .+.+...+..+.......
T Consensus 44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII 123 (319)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeec
Confidence 4899999996655433 48999998887766655555667899999999998876532 334556665555544433
Q ss_pred ec--cCCCeEEEEECCCCCEEEEecC------CCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeE
Q 005254 99 KG--HDGPAIGMACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATV 170 (706)
Q Consensus 99 ~~--~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 170 (706)
.. .......+++.++|.+.++-.. .+.+..++.+.+. +..+...-.....++|+|+++. ++++-+..+.|
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~-lyvad~~~~~I 201 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKV-LWVTETTANRL 201 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSE-EEEEEGGGTEE
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccce-EEEecccCCce
Confidence 32 2345788999999987666422 2335555555443 2222223345678999999765 34556678899
Q ss_pred EEEECCCC-eeEEEe-------ecccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 171 RVWDLLAK-KCVATL-------DKHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 171 ~vwd~~~~-~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
..|++... ...... .........|++.++|++.++....+.|.+|+. +++.+..+..
T Consensus 202 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~ 266 (319)
T d2dg1a1 202 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 266 (319)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred EEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence 99987532 211111 111234678999999998888888899999995 5666555543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.96 E-value=2.4e-06 Score=77.51 Aligned_cols=227 Identities=11% Similarity=0.047 Sum_probs=145.6
Q ss_pred EEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC--CCeEEEEEecCCCCC
Q 005254 400 LCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS--DHTIKVWSFDGLSDD 477 (706)
Q Consensus 400 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~ 477 (706)
..+. +.++++ +.++-...++|..|+..++...............++++++|+ ++++... .....++.+......
T Consensus 43 EG~~--~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 43 EGLN--FDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp EEEE--ECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCS
T ss_pred EeCE--ECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCce
Confidence 3454 677776 466777888999999888776666666667788999999987 5554332 233344444332111
Q ss_pred CCcccccceeEEEe--ecCcceEEEEEcCCCCEEEEeeCC------CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCC
Q 005254 478 AEQPMNLKAKAVVA--AHGKDINSLAVAPNDSLVCTGSQD------RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 478 ~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
...... ........+++.++|++.++.... +.+..++... ..+..+...-.....++|+|+++
T Consensus 119 --------~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~ 189 (319)
T d2dg1a1 119 --------LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEK 189 (319)
T ss_dssp --------CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSS
T ss_pred --------eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccc
Confidence 111111 122346789999999877664321 2355555433 33333333344567899999998
Q ss_pred EEEE-ecCCCcEEEEEcCCC-ceEEEEe-------ecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc--
Q 005254 550 VVIT-ASGDKTIKIWSISDG-SCLKTFE-------GHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK-- 618 (706)
Q Consensus 550 ~l~~-~~~dg~i~iwd~~~~-~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 618 (706)
.|+. -+..+.|..|++... ....... ......-.+++..+|++.++....+.|.+||. +|+.+..+..
T Consensus 190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~ 268 (319)
T d2dg1a1 190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 268 (319)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence 6644 456788999998643 2221111 11123567999999998888888999999995 7998888753
Q ss_pred ----CCCcEEEEEEcCCCCEEEEEeC
Q 005254 619 ----HEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 619 ----~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
+...+++++|.++...+++...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 269 RDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 3446789999998877665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.91 E-value=1.5e-07 Score=84.70 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=119.3
Q ss_pred eEEcCC--CCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEec-c-----CeEEEEECCCCeEEE
Q 005254 25 LVVSSD--GSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGH-S-----REIRVWDLSTLKCLR 96 (706)
Q Consensus 25 ~~~s~d--g~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~-d-----~~i~iwd~~~~~~~~ 96 (706)
+.+||| |+.+|+...+.|.++|+.+++.. .|..+...+...+|||||++||.... + ..|.+++..+++...
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 467899 99999999999999999988864 46667788899999999999986532 1 358888888887654
Q ss_pred Eee------ccCCCeEEEEECCCCCEEEEecC------CCcEEEEECCCCeEEEEee-----------------------
Q 005254 97 SWK------GHDGPAIGMACHPSGGLLATAGA------DRKVLVWDVDGGFCTHYFK----------------------- 141 (706)
Q Consensus 97 ~~~------~~~~~v~~~~~s~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~----------------------- 141 (706)
... .........+|+|||+.|+.... ...+...+.+.+.......
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP 162 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence 321 12235577899999999887532 1224444443332211000
Q ss_pred --------------------------CCCCcEEEEEEcCCCCceEEEEEec--CCeEEEEECCCCeeEEEeecccceEEE
Q 005254 142 --------------------------GHKGVVSSILFHPDTDKSLLFSGSD--DATVRVWDLLAKKCVATLDKHFSRVTS 193 (706)
Q Consensus 142 --------------------------~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~ 193 (706)
..........+.++ . ++..... ...|.++|+.+++........... .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~ 237 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--R-IYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--P 237 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--E-EEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--E
T ss_pred eeeeeccCCcceeeeeccccceeeccCCccccceeeeecc--c-cceecccccccceEEEeCCCCceEEeecCCCcc--c
Confidence 01111122222222 1 1222222 235667777665544322222222 3
Q ss_pred EEEecCCCEEEEEeCCCEEEEEeCCCCccee
Q 005254 194 MAITSDGSTLISAGRDKVVNLWDLRDYSCKL 224 (706)
Q Consensus 194 ~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~ 224 (706)
..|+|||+.|+.. .++.|+++|+++++...
T Consensus 238 ~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 238 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 4689999988764 47889999998876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.76 E-value=1.6e-05 Score=70.92 Aligned_cols=217 Identities=12% Similarity=-0.012 Sum_probs=144.4
Q ss_pred eecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccc
Q 005254 406 ALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLK 485 (706)
Q Consensus 406 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 485 (706)
+.+.++.+..+--..+.|..||..+++.... . ....+.++++.+++. +++ ++.+ .+..+|..+++
T Consensus 25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~-~~~~~~~i~~~~dg~-l~v-a~~~-gl~~~d~~tg~---------- 89 (295)
T d2ghsa1 25 FDPASGTAWWFNILERELHELHLASGRKTVH-A-LPFMGSALAKISDSK-QLI-ASDD-GLFLRDTATGV---------- 89 (295)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E-CSSCEEEEEEEETTE-EEE-EETT-EEEEEETTTCC----------
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCeEEEE-E-CCCCcEEEEEecCCC-EEE-EEeC-ccEEeecccce----------
Confidence 5555666555555678899999988865432 2 345678899999876 444 4444 58888877653
Q ss_pred eeEEEe----ecCcceEEEEEcCCCCEEEEeeC----CCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEE-EecC
Q 005254 486 AKAVVA----AHGKDINSLAVAPNDSLVCTGSQ----DRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVI-TASG 556 (706)
Q Consensus 486 ~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~ 556 (706)
...... .....++.+.+.|+|++.++... .+.-.+|.+..++....... -.....++|+++++.++ +-+.
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETT
T ss_pred eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecc
Confidence 111111 11235788999999987776542 23456777767765554443 34567899999998665 4456
Q ss_pred CCcEEEEEcCCC------ceE--EEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEE
Q 005254 557 DKTIKIWSISDG------SCL--KTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAV 628 (706)
Q Consensus 557 dg~i~iwd~~~~------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 628 (706)
.+.|..|++... +.. ..+.+..+....+++..+|++.++.-..+.|..||. +|+.+..+......+++++|
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAF 247 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEE
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEE
Confidence 788999987432 111 122223445778899999998888777889999995 79999999876678999999
Q ss_pred c-CCCCEE-EEEe
Q 005254 629 G-KKTEMF-ATGG 639 (706)
Q Consensus 629 s-~~~~~l-~~~~ 639 (706)
- +|.+.| +|..
T Consensus 248 GG~d~~~LyvTta 260 (295)
T d2ghsa1 248 IGPDASRLLVTSA 260 (295)
T ss_dssp ESTTSCEEEEEEB
T ss_pred eCCCCCEEEEEEC
Confidence 5 565554 4433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.68 E-value=6.8e-05 Score=66.64 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=140.8
Q ss_pred eeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEe
Q 005254 359 LKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGT 438 (706)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 438 (706)
..|.+.++.+..+--..+.|..||..+++.... .. ...+.++. ..+++.. ++ ++.+ .+..+|..+++......
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~-~~~~~~i~--~~~dg~l-~v-a~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVH-AL-PFMGSALA--KISDSKQ-LI-ASDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC-SSCEEEEE--EEETTEE-EE-EETT-EEEEEETTTCCEEEEEC
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-EC-CCCcEEEE--EecCCCE-EE-EEeC-ccEEeecccceeeEEee
Confidence 345555666666666778899999988765432 21 23455665 5566544 43 4444 58899999887654433
Q ss_pred C----CCcCeEEEEEecCCCeEEEEecC----CCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEE
Q 005254 439 G----HMGAVGAVAFSKKLQNFLVSGSS----DHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVC 510 (706)
Q Consensus 439 ~----~~~~v~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 510 (706)
. ....+..+.+.|+|. +.++... .+.-.+|.+..+ ........-...+.++++++++.+.
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g-----------~~~~~~~~~~~~Ng~~~s~d~~~l~ 163 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG-----------KVTKLFADISIPNSICFSPDGTTGY 163 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT-----------EEEEEEEEESSEEEEEECTTSCEEE
T ss_pred eecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCC-----------cEEEEeeccCCcceeeecCCCceEE
Confidence 2 223577889999987 4333321 234456666543 2222222334467899999998665
Q ss_pred Ee-eCCCcEEEEeCCCc------cE--EEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeecccCE
Q 005254 511 TG-SQDRTACVWRLPDL------VS--VVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTSSV 581 (706)
Q Consensus 511 ~~-~~dg~i~i~d~~~~------~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 581 (706)
.. +..+.|..|++... +. ...+.+.......+++..+|++.++.-..+.|..||. +++.+..+.-....+
T Consensus 164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~ 242 (295)
T d2ghsa1 164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT 242 (295)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCce
Confidence 44 55778888886421 11 1222334556788999999998887777888999994 789998888666789
Q ss_pred EEEEEE-eCCCEEEEE
Q 005254 582 LRASFL-TRGAQIVSC 596 (706)
Q Consensus 582 ~~~~~s-~~~~~l~~~ 596 (706)
++++|- +|.+.|+..
T Consensus 243 T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 243 TCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEEESTTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEE
Confidence 999996 576666544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=0.00028 Score=60.96 Aligned_cols=223 Identities=9% Similarity=0.085 Sum_probs=142.4
Q ss_pred eCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEec
Q 005254 393 AGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFD 472 (706)
Q Consensus 393 ~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 472 (706)
..+...+.+++ +...++.+..+-..++.|+..++...............+..+++..-++.+..+-...+.|.+.+++
T Consensus 32 ~~~~~~~~~ld--~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d 109 (263)
T d1npea_ 32 HIPAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (263)
T ss_dssp EEEEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCCCcEEEEE--EEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence 33444566677 7888888666666778899888877666555555556789999988777566677778899999987
Q ss_pred CCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCC-Cc--EEEEeCCCccEEEEEeecCCcEEEEEEccCCC
Q 005254 473 GLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQD-RT--ACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQ 549 (706)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 549 (706)
... ........-..+..+++.|...++...... +. |.--++............-.....+++++.++
T Consensus 110 g~~----------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~ 179 (263)
T d1npea_ 110 GTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179 (263)
T ss_dssp SCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT
T ss_pred Cce----------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCc
Confidence 542 112222333567899999977777654332 23 44445544333333333445678999998887
Q ss_pred EEEEe-cCCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEe-CCCCEEEEECCCCeEEEEeccC-CCcEEEE
Q 005254 550 VVITA-SGDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCG-ADGLVKLWTVRTGECIATYDKH-EDKIWAL 626 (706)
Q Consensus 550 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~ 626 (706)
.|..+ ...+.|...++........+.+. .....+++. +.+|.... ..+.|...|..+++.+..+..+ ......|
T Consensus 180 ~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi 256 (263)
T d1npea_ 180 QLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI 256 (263)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE
T ss_pred EEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceE
Confidence 77555 56778999998655444444432 234566664 45665544 5678999999999887766422 2333345
Q ss_pred EEcC
Q 005254 627 AVGK 630 (706)
Q Consensus 627 ~~s~ 630 (706)
++.+
T Consensus 257 ~v~~ 260 (263)
T d1npea_ 257 TIAL 260 (263)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 4433
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.43 E-value=0.00028 Score=69.31 Aligned_cols=375 Identities=11% Similarity=0.057 Sum_probs=184.2
Q ss_pred CCCEEEEee-CCeEEEEEc-cCCeEEEeecCCC----cc-------EEEEEEccC----CCEEEEEeccCeEEEEECCCC
Q 005254 30 DGSFIACAC-GESINIVDL-SNASIKSTIEGGS----DT-------ITALALSPD----DKLLFSSGHSREIRVWDLSTL 92 (706)
Q Consensus 30 dg~~l~~~~-~~~i~i~d~-~~~~~~~~l~~~~----~~-------i~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~ 92 (706)
+|.+.++.. .+.++..|. ++|+.+-.++... .. -+.+++.++ +.+++.++.|+.|.-.|.++|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 454444333 356777775 4677765443110 00 123555443 346888889999999999999
Q ss_pred eEEEEeeccCCCe-EEEEECC--CCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC-------------------
Q 005254 93 KCLRSWKGHDGPA-IGMACHP--SGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK------------------- 144 (706)
Q Consensus 93 ~~~~~~~~~~~~v-~~~~~s~--~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~------------------- 144 (706)
+++..+....... ..+.-+| .+..++++. ..|.|.-+|..+|+.+..+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g 221 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccc
Confidence 9998875321100 0111112 134455553 24889999999999988764211
Q ss_pred ------------------C-cEEEEEEcCCCCceEEEEEec--------------CCeEEEEECCCCeeEEEeecccc--
Q 005254 145 ------------------G-VVSSILFHPDTDKSLLFSGSD--------------DATVRVWDLLAKKCVATLDKHFS-- 189 (706)
Q Consensus 145 ------------------~-~v~~~~~~~~~~~~~l~~~~~--------------dg~i~vwd~~~~~~~~~~~~~~~-- 189 (706)
. .-..+++.+..+..++.++.. ...|...|+++|+.+..++....
T Consensus 222 ~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~ 301 (596)
T d1w6sa_ 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (596)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccc
Confidence 0 112334445444322222221 34577788889888776643211
Q ss_pred -------eEEEEEE-ecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhc
Q 005254 190 -------RVTSMAI-TSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKK 258 (706)
Q Consensus 190 -------~v~~~~~-~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (706)
....+.. ..+|+ .++....+|.+.++|..+++.+...+.....
T Consensus 302 Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~-------------------------- 355 (596)
T d1w6sa_ 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTV-------------------------- 355 (596)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC--------------------------
T ss_pred cCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccc--------------------------
Confidence 1111211 23443 5667778888888888888766443221100
Q ss_pred cccccceEEEEecCCCeEEEEECCCCeEEeeccCcc------ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEE
Q 005254 259 KRRSLEIHFITVGERGIVRMWNADSACLYEQKSSDV------TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYT 332 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 332 (706)
....-.+..++.-........ ................++.|....+++...+.... +.
T Consensus 356 ---------------~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~-~~ 419 (596)
T d1w6sa_ 356 ---------------NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMD-WE 419 (596)
T ss_dssp ---------------CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEE-EE
T ss_pred ---------------cccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccc-cc
Confidence 001111111111110000000 00001111122234456677766666655443222 21
Q ss_pred eeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCE
Q 005254 333 TVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKI 412 (706)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 412 (706)
....+...-.. ....-......+ .+. -......|.+.-||+.+++............... ....+..
T Consensus 420 ~~~~~~~~g~~--------~~g~~~~~~~~~-~g~-~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~---lsTaggl 486 (596)
T d1w6sa_ 420 PFMLPYKAGQF--------FVGATLNMYPGP-KGD-RQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT---MATAGDL 486 (596)
T ss_dssp ECCCCCCTTSC--------CCCEEEEEEECT-TSB-TTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTE
T ss_pred ccccccccccc--------ccccccccccCc-ccC-cccCCCcceEEEEeCCCCceecccCCCCCCccce---eEecCCE
Confidence 11111000000 000000000000 000 0000112678889999988776543222111111 2234555
Q ss_pred EEEEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecCCCeEEEEe
Q 005254 413 LIVTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSG 460 (706)
Q Consensus 413 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~ 460 (706)
++.|+.||.++.+|..+|+.+..+...... -.-+.|..+|+.+++..
T Consensus 487 -VF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 487 -VFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp -EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred -EEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence 667999999999999999999887644322 22255667887776654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.39 E-value=0.00036 Score=68.12 Aligned_cols=370 Identities=11% Similarity=0.087 Sum_probs=182.1
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCCc----------cE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGSD----------TI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~----------~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+|.+.+....+.|+-.|.++|+.+-.++.... .+ ..++.. +..++.+..++.|.-.|.++|+++..+
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 56666666666899999999998865432110 00 111221 456788888999999999999999887
Q ss_pred eccCCC-eEEEEECC--CCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC-------------------------
Q 005254 99 KGHDGP-AIGMACHP--SGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK------------------------- 144 (706)
Q Consensus 99 ~~~~~~-v~~~~~s~--~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~------------------------- 144 (706)
..+... -..+.-+| .+..++++. ..|.|.-+|..+|+.+..+..-.
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 643211 11111111 123344433 23679999999999988765210
Q ss_pred -----CcE-EEEEEcCCCCceEEEEEe-----------------cCCeEEEEECCCCeeEEEeecccce---------EE
Q 005254 145 -----GVV-SSILFHPDTDKSLLFSGS-----------------DDATVRVWDLLAKKCVATLDKHFSR---------VT 192 (706)
Q Consensus 145 -----~~v-~~~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~---------v~ 192 (706)
..+ ..+++.+.....++-++. ....|...|..+++....++..... ..
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 011 123444443332221211 0234666677788776655432211 11
Q ss_pred EEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEEEE
Q 005254 193 SMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHFIT 269 (706)
Q Consensus 193 ~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (706)
-..+..+++ .++.++.+|.+.++|..+++.+...+.....
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~------------------------------------- 346 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT------------------------------------- 346 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-------------------------------------
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccc-------------------------------------
Confidence 122222332 4556677778888887777765443321110
Q ss_pred ecCCCeEEEEECCCCeEEeeccCcc----ccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEE
Q 005254 270 VGERGIVRMWNADSACLYEQKSSDV----TISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELIL 345 (706)
Q Consensus 270 ~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (706)
...-.|...+.......... ................++.|+...+++...+..... .........
T Consensus 347 -----~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~-~~~~~~~~~----- 415 (560)
T d1kv9a2 347 -----WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY-RNEGKDFVT----- 415 (560)
T ss_dssp -----SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE-CCCGGGCCC-----
T ss_pred -----cccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeeccccccccee-ecccccccc-----
Confidence 00011111111111000000 000011111222335556666666665554433221 111100000
Q ss_pred eeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEE
Q 005254 346 SKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRL 425 (706)
Q Consensus 346 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i 425 (706)
...... ...+.... -.-.....|.+.-+|+.+++............... ..-.+.. +++|+.||.++.
T Consensus 416 ~~~~~~------~~~~~~~~--~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~---l~Taggl-VF~G~~dg~l~A 483 (560)
T d1kv9a2 416 RKAFNT------AAGFADAT--DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGT---LSTAGNL-VFQGTAAGQMHA 483 (560)
T ss_dssp CSSCCC------SSCGGGCC--CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCE---EEETTTE-EEEECTTSEEEE
T ss_pred cccccc------ccCccccc--CCCCcccccceEEEeCCCCeEeeeccCCCCCCCce---eEECCCE-EEEECCCCcEEE
Confidence 000000 00000000 00001112678889999998877655332211111 2233555 778999999999
Q ss_pred EeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEec
Q 005254 426 WDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 426 ~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~ 461 (706)
+|.++|+.+..+....... .-+.+..+|+.++++..
T Consensus 484 ~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 484 YSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 9999999998877543222 23566678877766543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.34 E-value=0.00017 Score=63.85 Aligned_cols=227 Identities=9% Similarity=0.025 Sum_probs=121.6
Q ss_pred CcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCC-----cEEEEeCCCceEEEEEe--
Q 005254 366 EQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDN-----SVRLWDSESRCCVGVGT-- 438 (706)
Q Consensus 366 ~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-- 438 (706)
++.++... ++.|.++|+.+++.. .+..+........ ++|+++.+.++...++ .|.+++..+++......
T Consensus 12 G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~--~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~ 87 (281)
T d1k32a2 12 GDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS 87 (281)
T ss_dssp TTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred CCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEE--ECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence 55665554 367999999988765 4555555566665 8999999655554333 47778888877655322
Q ss_pred ----CCCcCeEEEEEecCCCeEEEEecCC-----CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEE
Q 005254 439 ----GHMGAVGAVAFSKKLQNFLVSGSSD-----HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLV 509 (706)
Q Consensus 439 ----~~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 509 (706)
.........+|+|+++.++++...+ ..+...+.... ..............+.+++..+
T Consensus 88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T d1k32a2 88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI-------------NFVPLNLGPATHILFADGRRVI 154 (281)
T ss_dssp EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT-------------EEEECCSCSCSEEEEETTEEEE
T ss_pred CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc-------------eeEEecCCccceeeecCCCeEE
Confidence 1223456788999998444443322 12333333322 1111122223334444444444
Q ss_pred EEeeCCC-----------cEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecC--CCcEEEEEcCCCceEEEEee
Q 005254 510 CTGSQDR-----------TACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASG--DKTIKIWSISDGSCLKTFEG 576 (706)
Q Consensus 510 ~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~ 576 (706)
+....+. ............ ..............++++. .+..... ...|.++|+.+++.......
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~ 232 (281)
T d1k32a2 155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSF 232 (281)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred EeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecC
Confidence 4433221 111112112222 2222233444555566543 2333333 33578888876654432222
Q ss_pred cccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEE
Q 005254 577 HTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIA 614 (706)
Q Consensus 577 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 614 (706)
....+ ..|+|||+.|+.. .++.|+++|+.+++...
T Consensus 233 ~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 233 TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 22233 4689999998764 46889999998887543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.33 E-value=0.00088 Score=65.62 Aligned_cols=380 Identities=12% Similarity=0.092 Sum_probs=192.2
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC----------ccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEe
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS----------DTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSW 98 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~----------~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 98 (706)
+|.+.+....+.|+-+|.++|+.+-.++... ..+ ..+++. ...+..++.++.+.-.|.++|+++...
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc
Confidence 6765555555689999999999886553210 011 122232 335667788999999999999998766
Q ss_pred eccCCCe--EEEEECC--CCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC------------------------
Q 005254 99 KGHDGPA--IGMACHP--SGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK------------------------ 144 (706)
Q Consensus 99 ~~~~~~v--~~~~~s~--~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~------------------------ 144 (706)
....... ..+.-.| -+..+++++ ..|.|.-+|..+|+.+..+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 5321111 1111111 133455543 24689999999999988764211
Q ss_pred -------CcE-EEEEEcCCCCceEEEEEe-----------------cCCeEEEEECCCCeeEEEeeccc---------ce
Q 005254 145 -------GVV-SSILFHPDTDKSLLFSGS-----------------DDATVRVWDLLAKKCVATLDKHF---------SR 190 (706)
Q Consensus 145 -------~~v-~~~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~---------~~ 190 (706)
..+ ...++.++....++.++. ....|...|.++++.....+... .+
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 111 123444443321111111 11246667788887776554321 11
Q ss_pred EEEEEEecCC---CEEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccccccceEE
Q 005254 191 VTSMAITSDG---STLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKRRSLEIHF 267 (706)
Q Consensus 191 v~~~~~~~~~---~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (706)
........++ ..++.++.+|.+.++|..+++.+.................+........ .....
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--- 381 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA----------RDGSK--- 381 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG----------GCTTS---
T ss_pred eeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeec----------ccccc---
Confidence 2222223333 3577788999999999999998766543322111111111110000000 00000
Q ss_pred EEecCCCeEEEEECCCCeEEeeccCccccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEeeeccccceeeEEee
Q 005254 268 ITVGERGIVRMWNADSACLYEQKSSDVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKMELILSK 347 (706)
Q Consensus 268 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (706)
.................++.|+...+++...+.................. ..
T Consensus 382 --------------------------~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~--~~ 433 (573)
T d1kb0a2 382 --------------------------PQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP--GK 433 (573)
T ss_dssp --------------------------CEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT--TS
T ss_pred --------------------------ceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCC--Cc
Confidence 00000111122233455677887777777766655444332211000000 00
Q ss_pred EecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEe
Q 005254 348 RLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWD 427 (706)
Q Consensus 348 ~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d 427 (706)
...+. ......+.... -......|.+.-+|+.+++.....+......... ....+.. +++|+.||.++.+|
T Consensus 434 ~~~g~--~~~~~~~~~~~---p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~---lstaggl-VF~G~~dg~l~A~D 504 (573)
T d1kb0a2 434 PQSGT--GWNTAKFFNAE---PPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT---LTTAGNV-VFQGTADGRLVAYH 504 (573)
T ss_dssp TTGGG--TCCCCEEECSS---CCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE---EEETTTE-EEEECTTSEEEEEE
T ss_pred ccccc--ccccccccccC---CCCCCCcccEEEeCCCCCceEeeecCCCCCCCce---EEEcCCE-EEEECCCCeEEEEE
Confidence 00000 00000000000 0000112578889999998887765433211111 2234555 77899999999999
Q ss_pred CCCceEEEEEeCCCcCeE-EEEEecCCCeEEEEec
Q 005254 428 SESRCCVGVGTGHMGAVG-AVAFSKKLQNFLVSGS 461 (706)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~ 461 (706)
.++|+.+..+....+... -+.|..+|+.+++..+
T Consensus 505 a~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 505 AATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 999999988775433221 2556667876665543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=0.0008 Score=58.24 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=141.9
Q ss_pred CcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCce----EEEEEeCCCcCeEEEEEec
Q 005254 376 EQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRC----CVGVGTGHMGAVGAVAFSK 451 (706)
Q Consensus 376 ~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~ 451 (706)
..|+.+++.+........+ ...+..++ +.+..+.+..+-...+.|...++.... ...........+..+++.+
T Consensus 10 ~~I~~~~l~~~~~~~~~~~-~~~~~~id--~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPN-LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCCcceeeeCC-CCceEEEE--EEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEee
Confidence 4588888887665544443 34556777 888888755555566777766654321 2222334445677899998
Q ss_pred CCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEee--CCCcEEEEeCCCccEE
Q 005254 452 KLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGS--QDRTACVWRLPDLVSV 529 (706)
Q Consensus 452 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~ 529 (706)
.++++..+-...+.|.+.+++... ..............+++.|...+|.... ..+.|.-.++......
T Consensus 87 ~~~~lY~~d~~~~~I~v~~~~g~~----------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 87 IHSNIYWTDSVLGTVSVADTKGVK----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (266)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred ccceEEEEecCCCEEEeEecCCce----------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence 777677777788899999987642 2333444456688999998665665443 3345666666544333
Q ss_pred EEEeecCCcEEEEEEccCCCEEEEe-cCCCcEEEEEcCCCceEEEEeecc--cCEEEEEEEeCCCEEEEE-eCCCCEEEE
Q 005254 530 VTFRGHKRGIWSVEFSPVDQVVITA-SGDKTIKIWSISDGSCLKTFEGHT--SSVLRASFLTRGAQIVSC-GADGLVKLW 605 (706)
Q Consensus 530 ~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~-~~dg~i~iw 605 (706)
......-.....+++++.++.|..+ ...+.|...++............. .....+++. +.+|... ..++.|...
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~ 234 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSA 234 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEE
Confidence 3333344567899999987766655 556789999986544433333222 345566665 3455544 456788888
Q ss_pred ECCCCeEEEEecc
Q 005254 606 TVRTGECIATYDK 618 (706)
Q Consensus 606 d~~~~~~~~~~~~ 618 (706)
+..+++....+..
T Consensus 235 ~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 235 NRLTGSDVNLLAE 247 (266)
T ss_dssp ETTTCCCCEEEEC
T ss_pred ECCCCcceEEEEc
Confidence 8877765555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.30 E-value=0.00036 Score=62.53 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=130.4
Q ss_pred cCCCEEEEEeeCCCcEEEEeCCCceEEEEEeC-CCcCeEEEEEecCCC-eEEEEecCCC------------------eEE
Q 005254 408 SSGKILIVTGSKDNSVRLWDSESRCCVGVGTG-HMGAVGAVAFSKKLQ-NFLVSGSSDH------------------TIK 467 (706)
Q Consensus 408 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~l~~~~~d~------------------~i~ 467 (706)
++++++++.-..+.+|.+.|+.+.+..+.... ....+..+...++.+ .+++..+.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 36788788888899999999999987665443 345566666654332 2555554422 234
Q ss_pred EEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCc---------------EEEEe----------
Q 005254 468 VWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRT---------------ACVWR---------- 522 (706)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---------------i~i~d---------- 522 (706)
+.|..+.+ ..... .-......+.++++|+++++.+.+.. +.+++
T Consensus 177 ~ID~~tm~----------V~~QV-~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 177 AVDADKWE----------VAWQV-LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp EEETTTTE----------EEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEecCCce----------EEEEe-eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 45544321 11111 12345668999999999998775421 33333
Q ss_pred -------------CCCc---cEEEEEeecCCcEEEEEEccCCCEEEEec-CCCcEEEEEcCCCce------------EEE
Q 005254 523 -------------LPDL---VSVVTFRGHKRGIWSVEFSPVDQVVITAS-GDKTIKIWSISDGSC------------LKT 573 (706)
Q Consensus 523 -------------~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~------------~~~ 573 (706)
..+. ..+..+.. ......+.++|||+++++++ -+.++.|+|++.-.. ..+
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e 324 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 324 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred CCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence 2211 11112221 22345689999999987665 588999999863211 111
Q ss_pred EeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCC----------eEEEEeccCCCcEEEE-----EEcCCCCEEEEE
Q 005254 574 FEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTG----------ECIATYDKHEDKIWAL-----AVGKKTEMFATG 638 (706)
Q Consensus 574 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~-----~~s~~~~~l~~~ 638 (706)
.+ ..-....-+|...|.-..+---|..|.-|++... ..+..+.-|-.+=.-. ...|||++|++.
T Consensus 325 ~e-lglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~ 403 (459)
T d1fwxa2 325 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 403 (459)
T ss_dssp CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred cc-cCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence 11 2334567788888765556668999999998532 4556665544321111 236789998887
Q ss_pred e
Q 005254 639 G 639 (706)
Q Consensus 639 ~ 639 (706)
.
T Consensus 404 n 404 (459)
T d1fwxa2 404 S 404 (459)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.30 E-value=0.0013 Score=64.20 Aligned_cols=369 Identities=10% Similarity=0.014 Sum_probs=186.6
Q ss_pred CCCEEEEee-CCeEEEEEcc-CCeEEEeecCC--Cc--cE-------EEEEEccCCCEEEEEeccCeEEEEECCCCeEEE
Q 005254 30 DGSFIACAC-GESINIVDLS-NASIKSTIEGG--SD--TI-------TALALSPDDKLLFSSGHSREIRVWDLSTLKCLR 96 (706)
Q Consensus 30 dg~~l~~~~-~~~i~i~d~~-~~~~~~~l~~~--~~--~i-------~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~ 96 (706)
+|.+.+... .+.|+..|.. +|+.+-.++.. .. .. ..+++. +..|+.++.++.+.--|.++|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 555544443 4578888874 68877554311 00 00 123443 3457778889999999999999887
Q ss_pred EeeccC----CCeEEEEECCCCCEEEEec------CCCcEEEEECCCCeEEEEeeCCC----------------------
Q 005254 97 SWKGHD----GPAIGMACHPSGGLLATAG------ADRKVLVWDVDGGFCTHYFKGHK---------------------- 144 (706)
Q Consensus 97 ~~~~~~----~~v~~~~~s~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~~~---------------------- 144 (706)
...... ..++.--.-.++ .++++. .+|.|.-+|+.+|+.+..+....
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 664211 111111011133 344443 36789999999999988654221
Q ss_pred ---------------CcE-EEEEEcCCCCceEEEEEec----------------CCeEEEEECCCCeeEEEeecccc---
Q 005254 145 ---------------GVV-SSILFHPDTDKSLLFSGSD----------------DATVRVWDLLAKKCVATLDKHFS--- 189 (706)
Q Consensus 145 ---------------~~v-~~~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~--- 189 (706)
+.+ ...++.++... ++.+.. ...+...|.++|+.+..++.+..
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~--~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~W 296 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNL--FYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTE--EEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred ccccccCCcccccCCCccccccccchhcCe--eeeecccccCccccccccccccccceeeeeccchhheecccccCcccc
Confidence 111 22345555443 333222 34677789999998877654221
Q ss_pred ------eEEEEEEecCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccccccchhhhccc
Q 005254 190 ------RVTSMAITSDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLSSYNQQTIKKKR 260 (706)
Q Consensus 190 ------~v~~~~~~~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (706)
.........+++ .++..+.+|.+.++|..+++.+...+......
T Consensus 297 d~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~--------------------------- 349 (571)
T d2ad6a1 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN--------------------------- 349 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC---------------------------
T ss_pred ccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccc---------------------------
Confidence 112222233443 45677788999999999888764432211100
Q ss_pred cccceEEEEecCCCeEEEEECCCCeEEeeccCc------cccccccCCCccceeEEEEccCCCeeEEEeeCCceEEEEee
Q 005254 261 RSLEIHFITVGERGIVRMWNADSACLYEQKSSD------VTISFEMDDSKRGFTAATVLPSNQGLLCVTADQQLLLYTTV 334 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 334 (706)
...-.+..+.......... .................++.|+...+++...+.........
T Consensus 350 --------------~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~ 415 (571)
T d2ad6a1 350 --------------VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp --------------SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred --------------ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccccccccccc
Confidence 0001111111000000000 00000001111222345667777777766655433322111
Q ss_pred eccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEE
Q 005254 335 EVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILI 414 (706)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 414 (706)
....... ............+.. ......|.+..+|+.+++............... ....+.. +
T Consensus 416 ~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~---l~Taggl-V 478 (571)
T d2ad6a1 416 LPYRAGQ---------FFVGATLAMYPGPNG----PTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT---LYTKGGL-V 478 (571)
T ss_dssp CCCCTTS---------CCCCEEEEEEECTTS----TTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTE-E
T ss_pred ccccCCc---------cccccceeeccccCC----cccCCcccEEEeccCCCceeeEcCCCCCCCcce---eEecCCE-E
Confidence 1100000 000000000000000 001123678899999998876654332211111 2223555 6
Q ss_pred EEeeCCCcEEEEeCCCceEEEEEeCCCcC-eEEEEEecCCCeEEEEec
Q 005254 415 VTGSKDNSVRLWDSESRCCVGVGTGHMGA-VGAVAFSKKLQNFLVSGS 461 (706)
Q Consensus 415 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~ 461 (706)
++|+.||.++.+|.++|+.+..+...... -.-+.|..+|+.++++..
T Consensus 479 f~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 479 WYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence 77999999999999999999887644322 223666778887776543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.22 E-value=0.00029 Score=69.16 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC-cEEEEEEcCCCC-EE
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTE-MF 635 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l 635 (706)
|.|.-||+.+++.+-... +..+...-.++..|..++.|+.||.++.+|..+|+.+.+++.... .-.-+.+..||+ ||
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv 531 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence 679999999998876654 333333334455778999999999999999999999988873221 111233445776 55
Q ss_pred EE
Q 005254 636 AT 637 (706)
Q Consensus 636 ~~ 637 (706)
+.
T Consensus 532 av 533 (596)
T d1w6sa_ 532 AI 533 (596)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=0.0011 Score=55.89 Aligned_cols=203 Identities=11% Similarity=0.181 Sum_probs=139.8
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCC-eEEEEeec
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTL-KCLRSWKG 100 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 100 (706)
+.+..++|..+.||.-.+..+.|+|+++.+.++...- ..+|.--.|-.+. .|+..+.. .|+-|+++.. .+...+.-
T Consensus 65 AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT~t-aVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 65 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVTDN-AVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEECSS-EEEEEESSSSCCCEEEEEC
T ss_pred hhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEcCC-ceEEEcccCCCCchhhhhh
Confidence 3467889999999999999999999999998877763 4566667776554 45555444 7999999542 46666665
Q ss_pred cC----CCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCC-ceEEEEEe---
Q 005254 101 HD----GPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTD-KSLLFSGS--- 165 (706)
Q Consensus 101 ~~----~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~--- 165 (706)
|. ..|..-..+++.++++..+ ..|.+.+|+.+.+. -+.+.+|.+....+.+..+.. ..+++.+.
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 220 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 220 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEET
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCC
Confidence 53 5788889999999988764 24778999988664 445677766655555432221 12222222
Q ss_pred cCCeEEEEECCCCe--------eEEEee----cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCCCcceeeecC
Q 005254 166 DDATVRVWDLLAKK--------CVATLD----KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRDYSCKLTVPT 228 (706)
Q Consensus 166 ~dg~i~vwd~~~~~--------~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~ 228 (706)
..+.+.+-++.... ....+. ...+-..+|..++.-..++..+.-|.+.+||+.++.++..-..
T Consensus 221 ~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI 295 (327)
T d1utca2 221 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 295 (327)
T ss_dssp TEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence 23678888775421 111111 1234456788888888999999999999999999887766543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.21 E-value=0.00084 Score=65.48 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=87.4
Q ss_pred CEEEEeeCCCcEEEEeCCCccEEEEEeecCC------------------------c------------EEEEEEccCCCE
Q 005254 507 SLVCTGSQDRTACVWRLPDLVSVVTFRGHKR------------------------G------------IWSVEFSPVDQV 550 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~------------v~~~~~s~~~~~ 550 (706)
..++.+..+|.++++|..+++++...+.-.. . -...+++|+...
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 3677788999999999999988765432100 0 013456666666
Q ss_pred EEEecC------------------------------------CCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEE
Q 005254 551 VITASG------------------------------------DKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIV 594 (706)
Q Consensus 551 l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 594 (706)
++.... .|.+.-||+.+++.+-+... ..+...-.++-.+.+++
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF 473 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVF 473 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEE
Confidence 554321 25688899999998877653 23333334455677999
Q ss_pred EEeCCCCEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EEEEEe
Q 005254 595 SCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MFATGG 639 (706)
Q Consensus 595 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l~~~~ 639 (706)
.|+.||.++.+|..+|+.+.+++...... .-+.+..||+ ||++.+
T Consensus 474 ~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 99999999999999999998887422111 1244455776 555443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.21 E-value=0.0035 Score=61.39 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCc-EEEEEEcCCCC-
Q 005254 556 GDKTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDK-IWALAVGKKTE- 633 (706)
Q Consensus 556 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~- 633 (706)
..|.|.-+|+.+++.+-+...+ .++..-.++..|..+++|+.||.++.+|..+|+.+..++..... -.-+.+..+|+
T Consensus 464 ~~G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 3477889999999998877643 33333345567889999999999999999999999888732211 11245566885
Q ss_pred EEEEE
Q 005254 634 MFATG 638 (706)
Q Consensus 634 ~l~~~ 638 (706)
|+++.
T Consensus 543 Yv~i~ 547 (582)
T d1flga_ 543 YLGVT 547 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=0.0015 Score=56.51 Aligned_cols=184 Identities=12% Similarity=0.055 Sum_probs=117.4
Q ss_pred EEEEeeCCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEe-ccCeEEEEECCCCe----EEEEeeccCCCeEE
Q 005254 33 FIACACGESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSG-HSREIRVWDLSTLK----CLRSWKGHDGPAIG 107 (706)
Q Consensus 33 ~l~~~~~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~----~~~~~~~~~~~v~~ 107 (706)
+|.++.+..|+-+++.+.+....+. +...+.+|+|++..+.|..+. ..+.|.--++.... ....+......+..
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 6788888899999998776544444 455678999999888887764 45667766664321 12223333356778
Q ss_pred EEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeec
Q 005254 108 MACHPSGGLLATA-GADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDK 186 (706)
Q Consensus 108 ~~~s~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 186 (706)
+++.+.++.|..+ ...+.|.+.+++.......+.........+++.|.....+..-.+..+.|.-.++...........
T Consensus 82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~ 161 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence 9998877766665 456789999998776666566666778999999875543333233445666666644433333333
Q ss_pred ccceEEEEEEecCCCEEEEEe-CCCEEEEEeC
Q 005254 187 HFSRVTSMAITSDGSTLISAG-RDKVVNLWDL 217 (706)
Q Consensus 187 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w~~ 217 (706)
.-.....+++.+.++.|+.+. ..+.|...++
T Consensus 162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~ 193 (266)
T d1ijqa1 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193 (266)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccceeeEEEeeccccEEEEecCCcCEEEEEEC
Confidence 335567788887766666553 3345554444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.13 E-value=0.0026 Score=62.21 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcE-EEEEEcCCCC-EE
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKI-WALAVGKKTE-MF 635 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~-~l 635 (706)
|.+.-||+.+++.+-..+.. .+...-..+-.|.++++|+.||.++.+|..+|+.+..++...+.. .-+.+..||+ ||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 35778899899888776633 232223345578899999999999999999999998887322111 1144445776 54
Q ss_pred EE
Q 005254 636 AT 637 (706)
Q Consensus 636 ~~ 637 (706)
+.
T Consensus 536 ~v 537 (573)
T d1kb0a2 536 SV 537 (573)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.09 E-value=0.0024 Score=54.93 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=140.5
Q ss_pred ceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE
Q 005254 354 EEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC 433 (706)
Q Consensus 354 ~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 433 (706)
..+..++|...++.+..+-...+.|+..++........+......+.+++ +...++.+..+-...+.|.+.++.....
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iA--vD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIA--LDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEE--EeccCCeEEEeccCCCEEEEEecCCceE
Confidence 34677888876777776667778899999887666555555445677777 6666777556666778999999886654
Q ss_pred EEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEe-
Q 005254 434 VGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTG- 512 (706)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~- 512 (706)
.............+++.|....+..+-...+.-+++........ ........-.....+++.+.++.|...
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--------~~~i~~~~~~~P~glaiD~~~~~lYw~d 185 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--------RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--------CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--------ceeeeeecccccceEEEeecCcEEEEEe
Confidence 44444445678999999987744444433333345544322110 112222233456889999887777655
Q ss_pred eCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-cccCEEEEEEEe
Q 005254 513 SQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-HTSSVLRASFLT 588 (706)
Q Consensus 513 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~ 588 (706)
...+.|...++........+.+.. ...++++. .+....+-...+.|...|..+++.+..+.. .......+...+
T Consensus 186 ~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 186 AGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 456789999987655444444433 34577776 344445545678899999988887766542 223344555444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.03 E-value=0.0012 Score=64.30 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCC-cEEEEEEcCCCC-EE
Q 005254 558 KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHED-KIWALAVGKKTE-MF 635 (706)
Q Consensus 558 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~-~l 635 (706)
|.|.-+|+.+++.+-+... ..+..+-.++-.+..+++++.||.++.+|.++|+.+.+++.... .-.-+.+..||+ |+
T Consensus 444 G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 4677888888888766652 22222222344567888999999999999999999988873221 112244555776 56
Q ss_pred EEEe
Q 005254 636 ATGG 639 (706)
Q Consensus 636 ~~~~ 639 (706)
++..
T Consensus 523 ~v~~ 526 (571)
T d2ad6a1 523 GSMY 526 (571)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.99 E-value=0.0013 Score=58.93 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=127.0
Q ss_pred ceEEcC---CCCEEEEeeCC--eEEEEEccCCeEEEeecC-CCccEEEEEEcc--CCCEEEEEecc--------------
Q 005254 24 PLVVSS---DGSFIACACGE--SINIVDLSNASIKSTIEG-GSDTITALALSP--DDKLLFSSGHS-------------- 81 (706)
Q Consensus 24 ~~~~s~---dg~~l~~~~~~--~i~i~d~~~~~~~~~l~~-~~~~i~~l~~s~--~~~~l~s~~~d-------------- 81 (706)
.+.+.. ||++|.+.... +|.+.|+.+.+..+.++. ....+..+...+ +-.|++..+.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 556665 99999998865 899999999998765543 345667777765 45677776553
Q ss_pred ----CeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEEEecCCC---------------cEEEEECCC---------
Q 005254 82 ----REIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLATAGADR---------------KVLVWDVDG--------- 133 (706)
Q Consensus 82 ----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---------------~i~vw~~~~--------- 133 (706)
+.+..+|.++.+....+.. .+....+++++||+++++.+.+. .+.++|+..
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 3467899999988887764 34567899999999999876431 244555411
Q ss_pred -----C------------eEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCe-----------eEEEee
Q 005254 134 -----G------------FCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKK-----------CVATLD 185 (706)
Q Consensus 134 -----~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~ 185 (706)
+ ..+..+. -......+.++|||++ +++++..+.++.|+|+++.. .+..-.
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKy-i~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~ 325 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP 325 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCE-EEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence 1 1111111 1123456889999876 56666789999999996421 111111
Q ss_pred cccceEEEEEEecCCCEEEEEeCCCEEEEEeCCC
Q 005254 186 KHFSRVTSMAITSDGSTLISAGRDKVVNLWDLRD 219 (706)
Q Consensus 186 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w~~~~ 219 (706)
...-.-..-+|..+|.-..+.--|..|.-|++..
T Consensus 326 elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 1122345567888885455555799999999853
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.89 E-value=0.014 Score=56.99 Aligned_cols=376 Identities=13% Similarity=0.066 Sum_probs=189.2
Q ss_pred CCCEEEEeeCCeEEEEEccCCeEEEeecCCC--------ccE-EEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeec
Q 005254 30 DGSFIACACGESINIVDLSNASIKSTIEGGS--------DTI-TALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKG 100 (706)
Q Consensus 30 dg~~l~~~~~~~i~i~d~~~~~~~~~l~~~~--------~~i-~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 100 (706)
+|.+.++...+.|+-.|..+|+++-.+.... ..+ ..+++. +..++.++.++.+.-.|.++|+++.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence 5655555555689999999999885543210 001 122332 45677788899999999999998765432
Q ss_pred --cC------CCeEEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEeeCCCC--------------------
Q 005254 101 --HD------GPAIGMACHPSGGLLATAG-------ADRKVLVWDVDGGFCTHYFKGHKG-------------------- 145 (706)
Q Consensus 101 --~~------~~v~~~~~s~~~~~l~~~~-------~d~~i~vw~~~~~~~~~~~~~~~~-------------------- 145 (706)
+. ..-....--..+..++..+ ..+.|.-+|..+|+.+..+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 11 1101111111233333332 346788899999988776543221
Q ss_pred --------------------cE-EEEEEcCCCCceEEEEEe----------------------cCCeEEEEECCCCeeEE
Q 005254 146 --------------------VV-SSILFHPDTDKSLLFSGS----------------------DDATVRVWDLLAKKCVA 182 (706)
Q Consensus 146 --------------------~v-~~~~~~~~~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~ 182 (706)
.+ ..+++.+..+..++.++. ....|..-|..+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 11 224555554432222321 12347777888888877
Q ss_pred Eeecccc---------eEEEEEEe-cCCC---EEEEEeCCCEEEEEeCCCCcceeeecCcceeeeEEeeCCCCCcccccc
Q 005254 183 TLDKHFS---------RVTSMAIT-SDGS---TLISAGRDKVVNLWDLRDYSCKLTVPTYEMVEAVCAIPPGSAFDSFLS 249 (706)
Q Consensus 183 ~~~~~~~---------~v~~~~~~-~~~~---~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (706)
.++.... ...-+.+. .+++ .++..+.++.++++|..+++.+...+......-.........
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------ 379 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------ 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence 6643211 11112222 2332 566778899999999999987765544332111111000000
Q ss_pred cccchhhhccccccceEEEEecCCCeEEEEECCCCeEEeeccC---ccccccccCCCccceeEEEEccCCCeeEEEeeCC
Q 005254 250 SYNQQTIKKKRRSLEIHFITVGERGIVRMWNADSACLYEQKSS---DVTISFEMDDSKRGFTAATVLPSNQGLLCVTADQ 326 (706)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (706)
.. ++............. ..................++.|+...+++...+.
T Consensus 380 -------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~ 433 (582)
T d1flga_ 380 -------------------------RP-VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHW 433 (582)
T ss_dssp -------------------------CE-EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECE
T ss_pred -------------------------cc-eeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccc
Confidence 00 000000000000000 0000000011122334456667666666666554
Q ss_pred ceEEEEeeeccccceeeEEeeEecccCceeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee
Q 005254 327 QLLLYTTVEVPEKKMELILSKRLVGYNEEILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA 406 (706)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 406 (706)
....+........... .. .......+ ......|.+.-+|+.+++.......+....... .
T Consensus 434 ~~~~~~~~~~~~~g~~---------~~--~~~~~~~~------~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~---l 493 (582)
T d1flga_ 434 KEDYWTEEVSYTKGSA---------YL--GMGFRIKR------MYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGV---L 493 (582)
T ss_dssp EEEEEECCCCCCTTSC---------CC--CEEEEEEE------SCSSCSEEEEEECTTTCCEEEEEEESSCCCSCC---E
T ss_pred cccccccccccccccc---------cc--ccCccccc------cccCCCCeEEEEcCCCCcEEeecCCCCCCccce---e
Confidence 4444332221110000 00 00000000 001223778889999998887766443222111 2
Q ss_pred ecCCCEEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCe-EEEEEecCCCeEEEEe
Q 005254 407 LSSGKILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAV-GAVAFSKKLQNFLVSG 460 (706)
Q Consensus 407 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~ 460 (706)
...+.. +++|+.||.++.+|.++|+.+..++...... .-+.+..+|+.+++..
T Consensus 494 staggl-VF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 494 ATAGNL-VFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTE-EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEcCCe-EEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 344555 6779999999999999999998877543322 2367778887776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.47 E-value=0.014 Score=53.93 Aligned_cols=276 Identities=12% Similarity=0.067 Sum_probs=135.7
Q ss_pred eEeCCCCcEEEEEecCC-----------cEEEEeCCCceeeEe--ee-CCcceEEEeeeeeecCCCEEEEEeeCC-CcEE
Q 005254 360 KFLGEEEQYLAVATNIE-----------QVQVYDLSSMSCSYV--LA-GHSEIVLCLDTCALSSGKILIVTGSKD-NSVR 424 (706)
Q Consensus 360 ~~~~~~~~~l~~~~~~~-----------~i~~~d~~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~l~~~~~d-g~i~ 424 (706)
+..+.++++++.++... .+.+||..++.-... .. .+... |....+.+++.. ++.|+.+ ..+.
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~--~~~~~~~~~g~i-~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF--CPGISMDGNGQI-VVTGGNDAKKTS 101 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS--SCEEEECTTSCE-EEECSSSTTCEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccc--eeEEEEecCCcE-EEeecCCCccee
Confidence 33444566666655321 367899987654322 11 11111 111125677766 6666544 6899
Q ss_pred EEeCCCceEEEEEeCCC-cCeEEEEEecCCCeEEEEecCC------CeEEEEEecCCCCCCCcccccceeEEEeec----
Q 005254 425 LWDSESRCCVGVGTGHM-GAVGAVAFSKKLQNFLVSGSSD------HTIKVWSFDGLSDDAEQPMNLKAKAVVAAH---- 493 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~---- 493 (706)
+||..+......-.... ..-...+..++++ +++.++.+ ..+.+||.....-............ ...+
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~-~~~~~~~~ 179 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML-TADKQGLY 179 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC-CCCTTGGG
T ss_pred EecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccc-ccccccee
Confidence 99998876654322211 2234566777877 66666542 3588888765421000000000000 0000
Q ss_pred -CcceEEEEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEee------cCC--cEEEEEE-ccCCCEEEEecCCC-----
Q 005254 494 -GKDINSLAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRG------HKR--GIWSVEF-SPVDQVVITASGDK----- 558 (706)
Q Consensus 494 -~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~--~v~~~~~-s~~~~~l~~~~~dg----- 558 (706)
...-..+...++|+.+..+...+.+.+++..+......-.. +.. .-.++.+ ..+++.++.|+...
T Consensus 180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~ 259 (387)
T d1k3ia3 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259 (387)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence 00112233445777788777777788888776644332111 010 1112222 34567777776421
Q ss_pred ---cEEEEEcCCCce---EEEEee---cccCEEEEEEEeCCCEEEEEeCCC-----------CEEEEECCCCeEEE--Ee
Q 005254 559 ---TIKIWSISDGSC---LKTFEG---HTSSVLRASFLTRGAQIVSCGADG-----------LVKLWTVRTGECIA--TY 616 (706)
Q Consensus 559 ---~i~iwd~~~~~~---~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~--~~ 616 (706)
...+.++..... ...... +...-.+....+||+.++.|+.++ .+.+||..+.+-.. ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~ 339 (387)
T d1k3ia3 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339 (387)
T ss_dssp CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence 233444322111 111100 111122345567999999988531 47889988775322 11
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeC
Q 005254 617 DKHEDKIWALAVGKKTEMFATGGS 640 (706)
Q Consensus 617 ~~~~~~v~~~~~s~~~~~l~~~~~ 640 (706)
......-....+.+||+.++.|+.
T Consensus 340 ~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 340 SIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEEECCCCEEEEEeCC
Confidence 111111123345789999998884
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.46 E-value=0.023 Score=47.82 Aligned_cols=163 Identities=14% Similarity=0.222 Sum_probs=104.8
Q ss_pred ceEEcCCCCEEEEee----CCeEEEEEccCCeE-E-EeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEE
Q 005254 24 PLVVSSDGSFIACAC----GESINIVDLSNASI-K-STIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRS 97 (706)
Q Consensus 24 ~~~~s~dg~~l~~~~----~~~i~i~d~~~~~~-~-~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 97 (706)
.+.+..|. ++.+-. ...+.|.|+.++.. . +.+. .. +.-.+|..+.||.-+ ..++.|+|+++.+.+..
T Consensus 26 ~~T~ESDk-yicVRe~~~~~~~VvIidl~n~~~~~Rrpi~-Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klks 98 (327)
T d1utca2 26 TLTMESDK-FICIREKVGEQAQVVIIDMNDPSNPIRRPIS-AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA 98 (327)
T ss_dssp TEECSSSS-EEEEEEEETTEEEEEEEETTSTTSCEEEECC-CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cEEEecCC-EEEEEeccCCCceEEEEECCCCCcceecccc-hh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhce
Confidence 56665554 665443 22799999976653 2 2222 22 334579998888766 45899999999999988
Q ss_pred eeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCC-eEEEEeeCCC----CcEEEEEEcCCCCceEEEEEe-----cC
Q 005254 98 WKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGG-FCTHYFKGHK----GVVSSILFHPDTDKSLLFSGS-----DD 167 (706)
Q Consensus 98 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~-----~d 167 (706)
+.- ..+|.--.|-.+. .|+..+ +..|+-|+++.. .+.+.+..|. ..|..-..+++.+..+|..-+ -.
T Consensus 99 ~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~ 175 (327)
T d1utca2 99 HTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 175 (327)
T ss_dssp EEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEE
T ss_pred EEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCcee
Confidence 884 4577777777655 455444 467999999543 4566666553 456666777776553332211 24
Q ss_pred CeEEEEECCCCeeEEEeecccceEEEEEEe
Q 005254 168 ATVRVWDLLAKKCVATLDKHFSRVTSMAIT 197 (706)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 197 (706)
|.+.+|..+. +.-+.+.+|.+....+.+.
T Consensus 176 G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~ 204 (327)
T d1utca2 176 GAMQLYSVDR-KVSQPIEGHAASFAQFKME 204 (327)
T ss_dssp EEEEEEETTT-TEEEEECCSEEEEEEECCT
T ss_pred EEEEEEEecc-CcCccccceeeeeEEEEcC
Confidence 7788999754 4456778887666555443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.13 E-value=0.094 Score=48.00 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=73.7
Q ss_pred cEEEEEEccCCCEEEEEecc-----C------eEEEEECCCCeEEE--Ee-eccCCCeEEEEECCCCCEEEEecCC-CcE
Q 005254 62 TITALALSPDDKLLFSSGHS-----R------EIRVWDLSTLKCLR--SW-KGHDGPAIGMACHPSGGLLATAGAD-RKV 126 (706)
Q Consensus 62 ~i~~l~~s~~~~~l~s~~~d-----~------~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~d-~~i 126 (706)
++...+...+|+.++.|+.+ + .+.+||..+++-.. .. ..|.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 44455556788888887742 1 37799998875322 22 2233334567889999999998754 689
Q ss_pred EEEECCCCeEEEEeeCC-CCcEEEEEEcCCCCceEEEEEecC------CeEEEEECCCCee
Q 005254 127 LVWDVDGGFCTHYFKGH-KGVVSSILFHPDTDKSLLFSGSDD------ATVRVWDLLAKKC 180 (706)
Q Consensus 127 ~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~ 180 (706)
.+||..+..-...-... ...-...+..+|++. ++.|+.+ ..+.+||..+.+-
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v--~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV--FTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE--EEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eEecCccCcccccccccccccccceeeecCCce--eeeccccccccccceeeeecCCCCce
Confidence 99999887654322111 111245666777654 6666532 3688999887653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.80 E-value=0.14 Score=45.68 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=103.6
Q ss_pred ccceEEcCCCCEEEEeeCCeEEEEEccCC-----------eEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECC
Q 005254 22 GGPLVVSSDGSFIACACGESINIVDLSNA-----------SIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLS 90 (706)
Q Consensus 22 ~~~~~~s~dg~~l~~~~~~~i~i~d~~~~-----------~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~ 90 (706)
...+|+++...++++++.+.++|...+.- ....... -..|..++|+.| .|+.. .++.+..++..
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLDLE 113 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence 34799999999999999999888874321 1111111 136899999855 45554 45568888877
Q ss_pred CCeEEEEeeccCCCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee-----CCCCcEEEEEEcCCCCceEEEEEe
Q 005254 91 TLKCLRSWKGHDGPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK-----GHKGVVSSILFHPDTDKSLLFSGS 165 (706)
Q Consensus 91 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~ 165 (706)
+-........-..++..+.++|. .++....++.+.++++..++...... .-.+.+.+++|++.+.. ++++.
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq--~v~~~ 189 (381)
T d1xipa_ 114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ--SFAWR 189 (381)
T ss_dssp STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE--EEEEE
T ss_pred ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE--EEEeC
Confidence 65544444445577888888875 45556678999999998886433221 12355677777765554 44442
Q ss_pred cCCeEEEE-ECCCCeeEEEeecccceEEEEEEecCCCEEEEE
Q 005254 166 DDATVRVW-DLLAKKCVATLDKHFSRVTSMAITSDGSTLISA 206 (706)
Q Consensus 166 ~dg~i~vw-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 206 (706)
.++ ..+- ++.....+.........+.++.|..+..++++-
T Consensus 190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 221 1110 110000000001133468899998776655544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.77 E-value=0.21 Score=46.29 Aligned_cols=239 Identities=10% Similarity=0.041 Sum_probs=133.8
Q ss_pred eeecCCCEEEEEeeCCC----cEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecC---------------CCe
Q 005254 405 CALSSGKILIVTGSKDN----SVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSS---------------DHT 465 (706)
Q Consensus 405 ~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------d~~ 465 (706)
+.+|+++.++++-+.+| .++++|+.+++.+...- .......++|.++++.++.+.-. ...
T Consensus 131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~ 209 (430)
T d1qfma1 131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (430)
T ss_dssp EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred EecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence 37899988666655555 69999999998775321 11223568899998866555421 225
Q ss_pred EEEEEecCCCCCCCcccccceeEEEeec--CcceEEEEEcCCCCEEEEeeC---CCc--EEEEeCCCcc--------EEE
Q 005254 466 IKVWSFDGLSDDAEQPMNLKAKAVVAAH--GKDINSLAVAPNDSLVCTGSQ---DRT--ACVWRLPDLV--------SVV 530 (706)
Q Consensus 466 i~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~---dg~--i~i~d~~~~~--------~~~ 530 (706)
+..+.+..... ......... ...+..+..++++++++.... +.. +.+.|+.... ...
T Consensus 210 v~~h~lgt~~~--------~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 281 (430)
T d1qfma1 210 LYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (430)
T ss_dssp EEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred EEEEECCCCcc--------ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence 66666654311 011222222 234667788999998875432 233 3444543221 122
Q ss_pred EEeecCCcEEEEEEccCCCEEEEec---CCCcEEEEEcCCCce--EEEE-eecccCEEEEEEEeCCCEEEEEe-CCC--C
Q 005254 531 TFRGHKRGIWSVEFSPVDQVVITAS---GDKTIKIWSISDGSC--LKTF-EGHTSSVLRASFLTRGAQIVSCG-ADG--L 601 (706)
Q Consensus 531 ~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~-~~~~~~i~~~~~s~~~~~l~~~~-~dg--~ 601 (706)
...........+. +.++.+++... .++.|...++..... ...+ ..+...+..-.++..+.+|+... .++ .
T Consensus 282 ~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~ 360 (430)
T d1qfma1 282 LIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (430)
T ss_dssp EECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred eecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence 2222223333222 22333333332 246677777765432 2333 33445565556666666776554 554 5
Q ss_pred EEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE-e---CCCcEEEEECCchh
Q 005254 602 VKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATG-G---SDALVNLWHDSTAA 653 (706)
Q Consensus 602 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~---~dg~i~vw~~~~~~ 653 (706)
|+++++.+++.........+.|..+...++...+... + .-.++.-+|+.+++
T Consensus 361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 8899999888766665556667766666665544322 2 23778889988764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.098 Score=45.39 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=52.2
Q ss_pred CCCEEEEecCC-----CcEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCCC-----CEEEEECCCCeEEEEe
Q 005254 547 VDQVVITASGD-----KTIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGADG-----LVKLWTVRTGECIATY 616 (706)
Q Consensus 547 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 616 (706)
++..++.|+.+ ..+..||..+.+....-..............++..++.++.++ ....+|..+.+....-
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred eecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence 34555555543 3578888766543322111111111122233455666665543 5678888776654322
Q ss_pred ccCCCcE-EEEEEcCCCCEEEEEeCCCc-----EEEEECCch
Q 005254 617 DKHEDKI-WALAVGKKTEMFATGGSDAL-----VNLWHDSTA 652 (706)
Q Consensus 617 ~~~~~~v-~~~~~s~~~~~l~~~~~dg~-----i~vw~~~~~ 652 (706)
....... .+++ ..++++++.|+.++. +.+||+.+.
T Consensus 228 ~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 228 PMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCC
Confidence 2111111 1222 236788887775543 677777654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.25 E-value=0.18 Score=39.44 Aligned_cols=231 Identities=12% Similarity=0.110 Sum_probs=116.5
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCC--EEEEE-----eeCCCcEEEEeCCCceEEEEE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGK--ILIVT-----GSKDNSVRLWDSESRCCVGVG 437 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~ 437 (706)
+.+++.++...|.+.++-+..++....-+.. |... ..|... .+.++ |-....+.+-++...-.-..+
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkeP---I~~~---~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i 98 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREP---INSV---LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL 98 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSSC---CSEE---CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEeccc---ccCc---CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe
Confidence 5668888888899999988877665443322 2111 112111 11111 112223444444421111111
Q ss_pred eCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEE-cCCCCEEEEeeC-C
Q 005254 438 TGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAV-APNDSLVCTGSQ-D 515 (706)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~-d 515 (706)
. ...++.-+...-++++.+++|+......+|-++.++...-..... ......-...-|..+.+ .++.+-+.++.- .
T Consensus 99 ~-spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S 176 (313)
T d2hu7a1 99 E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS 176 (313)
T ss_dssp T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred c-CCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeeecCCcceEEEEeccc
Confidence 1 122344445555666789999999999999998773110000000 00001112222333332 222222333433 5
Q ss_pred CcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEe----cCCCcEEEEEcCCCceEE-EEee------cccCEEEE
Q 005254 516 RTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITA----SGDKTIKIWSISDGSCLK-TFEG------HTSSVLRA 584 (706)
Q Consensus 516 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~-~~~~------~~~~i~~~ 584 (706)
|.+++++...+ .++....++..+. ++. ++..-| -+|+++++.-+ .+.. ..-.|+.+
T Consensus 177 G~lri~tpkeG-----------S~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~ 243 (313)
T d2hu7a1 177 GGLRVFDSGEG-----------SFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWL 243 (313)
T ss_dssp EEEEEECCSSE-----------EEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEE
T ss_pred CCEEEecCCCC-----------cccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEee
Confidence 55666555444 4444455554433 222 222223 34766554322 1111 22356677
Q ss_pred EEEeCCCEEEEEeCCCCEEEEECCCCeEEEEecc
Q 005254 585 SFLTRGAQIVSCGADGLVKLWTVRTGECIATYDK 618 (706)
Q Consensus 585 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 618 (706)
-+.|++++++.+-.||.-++|. +|+.+...++
T Consensus 244 ~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 244 GYLPDGRLAVVARREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp EECTTSCEEEEEEETTEEEEEE--TTEEECCCSS
T ss_pred eeCCCCcEEEEEecCCchheee--cceEecCCCC
Confidence 7899999999999999999997 6777665543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.01 E-value=0.46 Score=41.90 Aligned_cols=135 Identities=8% Similarity=-0.005 Sum_probs=76.7
Q ss_pred cCCCC-EEEEee---CCCcEEEEeCCCccE-EE---EEee-cCCcEEEEEEccCCCEEEEecC---------------CC
Q 005254 503 APNDS-LVCTGS---QDRTACVWRLPDLVS-VV---TFRG-HKRGIWSVEFSPVDQVVITASG---------------DK 558 (706)
Q Consensus 503 s~~~~-~l~~~~---~dg~i~i~d~~~~~~-~~---~~~~-~~~~v~~~~~s~~~~~l~~~~~---------------dg 558 (706)
.++|. +|++.. ...+|.+|++..... +. .+.. .......+++..++.+++|-.. -+
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 45665 344443 345788888754332 22 2221 2345789999999998888321 12
Q ss_pred cEEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEE-eCCCCEEEEECCCCeEE---EEeccCCCcEEEEEEcCCCCE
Q 005254 559 TIKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSC-GADGLVKLWTVRTGECI---ATYDKHEDKIWALAVGKKTEM 634 (706)
Q Consensus 559 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~ 634 (706)
...+|..+.++...... .-...+.++++||+++|+.+ +..+.|++|++.....+ ..+. -.+..-.+.+.+++..
T Consensus 187 ~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGD 264 (340)
T ss_dssp CEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCC
T ss_pred ceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCE
Confidence 34555554444332222 34567899999999887555 45678999988744322 2222 2344556777654333
Q ss_pred EEEEe
Q 005254 635 FATGG 639 (706)
Q Consensus 635 l~~~~ 639 (706)
+.+++
T Consensus 265 lwva~ 269 (340)
T d1v04a_ 265 LWVGC 269 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 33343
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.15 Score=45.38 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=100.8
Q ss_pred cCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCC---CCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcE
Q 005254 442 GAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSD---DAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTA 518 (706)
Q Consensus 442 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 518 (706)
....-+++++... ++++++.++ +.+..+..... ........... ..-..|..++|+.| .|++. .++.+
T Consensus 37 ~~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~----~~ip~v~~vafs~d--~l~v~-~~~~l 107 (381)
T d1xipa_ 37 ASLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE----KEIPDVIFVCFHGD--QVLVS-TRNAL 107 (381)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE----EECTTEEEEEEETT--EEEEE-ESSEE
T ss_pred cccceEEEeCCCC-EEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec----cCCCCeEEEEeeCC--EEEEE-eCCCE
Confidence 3455677777655 677777664 66766432200 00000011111 12236888999755 45554 35568
Q ss_pred EEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEee-----cccCEEEEEEEeCCCEE
Q 005254 519 CVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEG-----HTSSVLRASFLTRGAQI 593 (706)
Q Consensus 519 ~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l 593 (706)
..++............-..++..+.++|. .++....++.+.++++.+++......+ -.+.+.+++|++.|..+
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~ 185 (381)
T d1xipa_ 108 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS 185 (381)
T ss_dssp EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred EEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence 88887776555555555677888888874 455666788899999988764332211 12456666666666666
Q ss_pred EEEeCCCCEEEE-ECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 005254 594 VSCGADGLVKLW-TVRTGECIATYDKHEDKIWALAVGKKTEMFATG 638 (706)
Q Consensus 594 ~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 638 (706)
+++..++ ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus 186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 6653221 1110 111100000000123467888887766666543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.92 E-value=1.4 Score=40.46 Aligned_cols=248 Identities=12% Similarity=0.112 Sum_probs=121.5
Q ss_pred eEeeEeCCCCcEEEEE-ecCC----cEEEEeCCCceeeEeeeCCcceEEEeeeeeecCCCEEEEEeeC------------
Q 005254 357 LDLKFLGEEEQYLAVA-TNIE----QVQVYDLSSMSCSYVLAGHSEIVLCLDTCALSSGKILIVTGSK------------ 419 (706)
Q Consensus 357 ~~~~~~~~~~~~l~~~-~~~~----~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~------------ 419 (706)
...+.+| ++++++.+ +..| .++++|+.+++.+...-... ....+. +.+++..++.+.-.
T Consensus 128 ~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~-~~~~~~--W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 128 RGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMA--WTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEE--ECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred cceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccccc-cccceE--EcCCCCEEEEEEeccccCcccccccc
Confidence 3444554 55666554 3333 69999999998654221100 011222 67788875555422
Q ss_pred ---CCcEEEEeCCCce--EEEEEeCC--CcCeEEEEEecCCCeEEEEec--CCCeEEEE--EecCCCCCCCcccccceeE
Q 005254 420 ---DNSVRLWDSESRC--CVGVGTGH--MGAVGAVAFSKKLQNFLVSGS--SDHTIKVW--SFDGLSDDAEQPMNLKAKA 488 (706)
Q Consensus 420 ---dg~i~i~d~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~--~~~~~~~~~~~~~~~~~~~ 488 (706)
...+..+.+.+.. ....+... ...+..+..+++++.+++... .+....+| ++......... ......
T Consensus 204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~ 281 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG--ILKWVK 281 (430)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS--SCCCEE
T ss_pred cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccc--ccceeE
Confidence 1246677666542 22333333 234666778889885554433 23444444 44332211111 111112
Q ss_pred EEeecCcceEEEEEcCCCCEEEEee---CCCcEEEEeCCCccE---EEEEeecCCcEEEEEEccCCCEEEEec-CCC--c
Q 005254 489 VVAAHGKDINSLAVAPNDSLVCTGS---QDRTACVWRLPDLVS---VVTFRGHKRGIWSVEFSPVDQVVITAS-GDK--T 559 (706)
Q Consensus 489 ~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg--~ 559 (706)
..........-+ ...++.+++... .++.|...++..... ...+..+...+..-.++..+.+|+... .++ .
T Consensus 282 ~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~ 360 (430)
T d1qfma1 282 LIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (430)
T ss_dssp EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred eecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence 222222222222 222333333322 235566666654321 223333455555444444455665443 444 5
Q ss_pred EEEEEcCCCceEEEEeecccCEEEEEEEeCCCEEEEEeCC----CCEEEEECCCCe
Q 005254 560 IKIWSISDGSCLKTFEGHTSSVLRASFLTRGAQIVSCGAD----GLVKLWTVRTGE 611 (706)
Q Consensus 560 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 611 (706)
|+++++.+++.........+.+..+...++...+...-.+ .+++-+|+.+++
T Consensus 361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 8889998877655544444455544444555444332222 578888888875
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.45 E-value=1.4 Score=38.48 Aligned_cols=204 Identities=10% Similarity=0.120 Sum_probs=114.0
Q ss_pred CCcEEEEEecCCcEEEEeCCCceeeEeeeCCcceEEEeeeee---ecCCCEEEEEee--CCC--cEEEEeCCC-ceEEEE
Q 005254 365 EEQYLAVATNIEQVQVYDLSSMSCSYVLAGHSEIVLCLDTCA---LSSGKILIVTGS--KDN--SVRLWDSES-RCCVGV 436 (706)
Q Consensus 365 ~~~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~l~~~~--~dg--~i~i~d~~~-~~~~~~ 436 (706)
...+++.....+-+++||+. ++.+..+.. +.+..++... ......-+++++ .++ +|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44566666777789999996 555555432 3344443221 112222244444 222 577776642 222333
Q ss_pred EeCC-------CcCeEEEEE--ecC-CCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCC
Q 005254 437 GTGH-------MGAVGAVAF--SKK-LQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPND 506 (706)
Q Consensus 437 ~~~~-------~~~v~~~~~--~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 506 (706)
+... ...+..+++ ++. +..++++...+|.+..|.+....... ....... .......+..+.+.+..
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~---v~~~lvr-~f~~~~q~EGCVvDde~ 191 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY---ISGKKVR-AFKMNSQTEGMAADDEY 191 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS---EEEEEEE-EEECSSCEEEEEEETTT
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc---eeeEeee-ccCCCCccceEEEeCCC
Confidence 2221 224666776 554 44467788889999999885432111 1111222 22345678899999999
Q ss_pred CEEEEeeCCCcEEEEeCCC-----ccEEEEEee--cCCcEEEEEEcc--C--CCEEEEecCCCcEEEEEcCCC-ceEEEE
Q 005254 507 SLVCTGSQDRTACVWRLPD-----LVSVVTFRG--HKRGIWSVEFSP--V--DQVVITASGDKTIKIWSISDG-SCLKTF 574 (706)
Q Consensus 507 ~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~~~~s~--~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~ 574 (706)
..|.++-++.-+..++... ...+....+ ....+..|+.-. + |-+|++.-.+++..|||.... +.+..|
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence 9999998877666666531 122222222 345667776543 3 334555556788999998763 555554
Q ss_pred e
Q 005254 575 E 575 (706)
Q Consensus 575 ~ 575 (706)
.
T Consensus 272 ~ 272 (353)
T d1h6la_ 272 Q 272 (353)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.01 E-value=1.8 Score=37.87 Aligned_cols=200 Identities=12% Similarity=0.194 Sum_probs=113.1
Q ss_pred EEEEEeeCCCcEEEEeCCCceEEEEEeCCCcCeEEEEEec----CCCe-EEEEec-C-C--CeEEEEEecCCCCCCCccc
Q 005254 412 ILIVTGSKDNSVRLWDSESRCCVGVGTGHMGAVGAVAFSK----KLQN-FLVSGS-S-D--HTIKVWSFDGLSDDAEQPM 482 (706)
Q Consensus 412 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~----~~~~-~l~~~~-~-d--~~i~i~~~~~~~~~~~~~~ 482 (706)
.+++....++-+++||+. |+.+..+. .+.+..+..-. .++. -++.++ . + .+|.+|.+...........
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 336666677779999985 77776653 45666665432 1221 233333 2 2 3688888864321100000
Q ss_pred ccceeEEEeecCcceEEEEE--cCC-CC-EEEEeeCCCcEEEEeCC---Cc----cEEEEEeecCCcEEEEEEccCCCEE
Q 005254 483 NLKAKAVVAAHGKDINSLAV--APN-DS-LVCTGSQDRTACVWRLP---DL----VSVVTFRGHKRGIWSVEFSPVDQVV 551 (706)
Q Consensus 483 ~~~~~~~~~~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~s~~~~~l 551 (706)
.. .. ........+..+++ ++. |. ++++...+|.+..|.+. .+ +.++.+. -...+..+.+.+..+.|
T Consensus 118 ~~-~~-p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 118 DP-NR-PIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CS-SS-CEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred cc-cc-ccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 00 00 00111123455555 664 44 55667778998888763 22 3444444 45678999999999999
Q ss_pred EEecCCCcEEEEEcCC-----CceEEEEee--cccCEEEEEEEe--CCC-EEE-EEeCCCCEEEEECCC-CeEEEEec
Q 005254 552 ITASGDKTIKIWSISD-----GSCLKTFEG--HTSSVLRASFLT--RGA-QIV-SCGADGLVKLWTVRT-GECIATYD 617 (706)
Q Consensus 552 ~~~~~dg~i~iwd~~~-----~~~~~~~~~--~~~~i~~~~~s~--~~~-~l~-~~~~dg~i~iwd~~~-~~~~~~~~ 617 (706)
+.+-++.-|..++... +..+....+ ....+..+++-. ++. ||+ +.-.+++..+||..+ .+.+..+.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 9998877666666542 122222222 245677777653 333 554 444567899999876 46666654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.75 Score=39.41 Aligned_cols=204 Identities=11% Similarity=0.015 Sum_probs=92.1
Q ss_pred ceeeceeeeeeeeccceEEcCCCCEEEEeeC----------CeEEEEEccCCeEEEe--ecCCCccEEEEEEccCCCEEE
Q 005254 9 SYGCEPVLQQFYGGGPLVVSSDGSFIACACG----------ESINIVDLSNASIKST--IEGGSDTITALALSPDDKLLF 76 (706)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----------~~i~i~d~~~~~~~~~--l~~~~~~i~~l~~s~~~~~l~ 76 (706)
.|...+.++.-..+.+++. -+++++++|+. +.+.+||..+.+-... +......-.+.. .+++.++
T Consensus 30 ~W~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~--~~~~i~~ 106 (288)
T d1zgka1 30 TWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYA 106 (288)
T ss_dssp EEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEE
T ss_pred eEEECCCCCCccceeEEEE-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc--cceeeEE
Confidence 3444444433222333333 35666666542 2578899887764321 111111112222 2566666
Q ss_pred EEeccC-----eEEEEECCCCeEEEEeecc--CCCeEEEEECCCCCEEEEecC-----CCcEEEEECCCCeEEEEeeC-C
Q 005254 77 SSGHSR-----EIRVWDLSTLKCLRSWKGH--DGPAIGMACHPSGGLLATAGA-----DRKVLVWDVDGGFCTHYFKG-H 143 (706)
Q Consensus 77 s~~~d~-----~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~-~ 143 (706)
.++.++ ....+|..+......-... ......+ .. ++..++.|+. ...+..||..+.+....-.. .
T Consensus 107 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 184 (288)
T d1zgka1 107 VGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-VL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 184 (288)
T ss_dssp ECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-EE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS
T ss_pred ecceecccccceeeeeccccCccccccccccccccceee-ee-eecceEecCcccccccceEEEeecccccccccccccc
Confidence 554332 3555776665433221111 1111222 22 3445555553 24578888877654432111 1
Q ss_pred CCcEEEEEEcCCCCceEEEEEecC-----CeEEEEECCCCeeEEEeecccceE-EEEEEecCCCEEEEEeCCC-----EE
Q 005254 144 KGVVSSILFHPDTDKSLLFSGSDD-----ATVRVWDLLAKKCVATLDKHFSRV-TSMAITSDGSTLISAGRDK-----VV 212 (706)
Q Consensus 144 ~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg-----~i 212 (706)
...-.+.+... . .+++.|+.+ .....+|..+.+....-....... .+++ ..+++.++.|+.++ .+
T Consensus 185 ~~~~~~~~~~~--~-~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v 260 (288)
T d1zgka1 185 IRSGAGVCVLH--N-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSV 260 (288)
T ss_dssp CCBSCEEEEET--T-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEE
T ss_pred cccccccccee--e-eEEEecCccccccccceeeeeecceeeecccCccCcccceEEE-EECCEEEEEecCCCCeecceE
Confidence 11112222222 2 234554433 345677776655433211111111 1222 23677777776543 47
Q ss_pred EEEeCCCCc
Q 005254 213 NLWDLRDYS 221 (706)
Q Consensus 213 ~~w~~~~~~ 221 (706)
.+||+.+.+
T Consensus 261 ~~yd~~~~~ 269 (288)
T d1zgka1 261 ECYDPDTDT 269 (288)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCE
Confidence 788887654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.75 E-value=2 Score=37.61 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=104.6
Q ss_pred cceEEcCCCCEEEEeeC-------------CeEEEEEccCCeEE-E--eecCC-----CccEEEEEE--ccCCC-EEEEE
Q 005254 23 GPLVVSSDGSFIACACG-------------ESINIVDLSNASIK-S--TIEGG-----SDTITALAL--SPDDK-LLFSS 78 (706)
Q Consensus 23 ~~~~~s~dg~~l~~~~~-------------~~i~i~d~~~~~~~-~--~l~~~-----~~~i~~l~~--s~~~~-~l~s~ 78 (706)
..|++.|||..+++++. +.|.++|+++.+.. . .+.+. ...-..+.+ .++|+ +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 36999999988776542 57999998765321 1 12211 112233333 45665 45554
Q ss_pred e---ccCeEEEEECCCC--eEE--EEeec-cCCCeEEEEECCCCCEEEEec--C-------------CCcEEEEECCCCe
Q 005254 79 G---HSREIRVWDLSTL--KCL--RSWKG-HDGPAIGMACHPSGGLLATAG--A-------------DRKVLVWDVDGGF 135 (706)
Q Consensus 79 ~---~d~~i~iwd~~~~--~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~--~-------------d~~i~vw~~~~~~ 135 (706)
. ...+|.+|++... +.. ..+.. .....+.+++..++..++|-. . -+...+|..+.++
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 3 3567888887533 222 22222 234578999999998888831 1 1234555555544
Q ss_pred EEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEe--ecccceEEEEEEecCCCEEEEEe
Q 005254 136 CTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATL--DKHFSRVTSMAITSDGSTLISAG 207 (706)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~ 207 (706)
...... .-...+.++++|+++. ++++-+..+.|++|++.....+... ..-.+..-.+.+.+++..+.+++
T Consensus 198 ~~~~~~-~l~~pNGI~~s~d~~~-lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 198 VRVVAE-GFDFANGINISPDGKY-VYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEEE-EESSEEEEEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eEEEcC-CCCccceeEECCCCCE-EEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 333222 3456799999999765 5556667788999988754433221 11234456677765433444443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=88.26 E-value=2.5 Score=35.65 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=94.7
Q ss_pred CCcEEEEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEE
Q 005254 420 DNSVRLWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINS 499 (706)
Q Consensus 420 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (706)
||.|..|-....-.+.........+..++.-.. ..+.- .|+.+..|........... ......+..
T Consensus 43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~---~~~al-~dg~v~~wG~~~~gq~~~~----------~~~~~~~~~ 108 (273)
T d1jtdb_ 43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY---HSLAL-KDGEVIAWGGNEDGQTTVP----------AEARSGVDA 108 (273)
T ss_dssp TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS---EEEEE-ETTEEEEEECCTTSTTCCC----------GGGGSSCCE
T ss_pred CCEEEEEeCCCCCceeeeecccccceEEecCCC---ceeee-eeeeeeccCCCcceeeccc----------cccccceeE
Confidence 788988866543322222223344555554322 22222 4899999986543211110 001122333
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCCccEEEEEeecCCcEEEEEEccCCCEEEEecCCCcEEEEEcCCCceEEEEeeccc
Q 005254 500 LAVAPNDSLVCTGSQDRTACVWRLPDLVSVVTFRGHKRGIWSVEFSPVDQVVITASGDKTIKIWSISDGSCLKTFEGHTS 579 (706)
Q Consensus 500 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 579 (706)
++..... .+. -.|+.+..|.................|..++-. ...++ ...++.++.|-...............
T Consensus 109 i~~~~~~--~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~ 182 (273)
T d1jtdb_ 109 IAAGAWA--SYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQTTVPAEAQS 182 (273)
T ss_dssp EEEETTE--EEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTSTTSCCGGGSS
T ss_pred Eeeeccc--ccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecccCCcccccccccC
Confidence 4333221 222 247888888644322111111122344444432 22222 23467788887543322211112344
Q ss_pred CEEEEEEEeCCCEEEEEeCCCCEEEEECCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005254 580 SVLRASFLTRGAQIVSCGADGLVKLWTVRTGECIATYDKHEDKIWALAVGKKTEMFATGGSDALVNLWHDS 650 (706)
Q Consensus 580 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 650 (706)
.|..++.. ....+.-. ||.|+-|=....-.+.........|..|+-...- .++. .||.|..|--.
T Consensus 183 ~v~~Is~G--~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~~WG~~ 247 (273)
T d1jtdb_ 183 GVDDVAGG--IFHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVIAWGSS 247 (273)
T ss_dssp SEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEEEESTT
T ss_pred Cccceecc--ceeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEEEECCC
Confidence 66666543 23333333 7889988543221111112223456677654333 3332 38999999543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.88 E-value=9.7 Score=34.67 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=41.3
Q ss_pred ccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEE--Eee------ccCCCeEEEEECCC---CCEEEE
Q 005254 61 DTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLR--SWK------GHDGPAIGMACHPS---GGLLAT 119 (706)
Q Consensus 61 ~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~------~~~~~v~~~~~s~~---~~~l~~ 119 (706)
..-++|+|.|||+++++--..|.|++++..+++... .+. .-......|+|+|+ ..++..
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv 96 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI 96 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence 345799999999988876557999999988775432 221 12356789999995 344444
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.50 E-value=4.4 Score=37.10 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=39.0
Q ss_pred CCeEEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEee--------CCCCcEEEEEEcCC
Q 005254 103 GPAIGMACHPSGGLLATAGADRKVLVWDVDGGFCTHYFK--------GHKGVVSSILFHPD 155 (706)
Q Consensus 103 ~~v~~~~~s~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~ 155 (706)
...++|+|.||++++++--..|.|++++..+++...... .-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 566799999999988886557999999988775433221 12356789999996
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.11 E-value=11 Score=32.41 Aligned_cols=216 Identities=12% Similarity=0.106 Sum_probs=117.3
Q ss_pred ccceeEEEEccCCCeeEEEeeCCceEEEEeeecccccee---eEEeeEe-cccCceeeEeeEeC--CCCcEEEEEecCCc
Q 005254 304 KRGFTAATVLPSNQGLLCVTADQQLLLYTTVEVPEKKME---LILSKRL-VGYNEEILDLKFLG--EEEQYLAVATNIEQ 377 (706)
Q Consensus 304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~v~~~~~~~--~~~~~l~~~~~~~~ 377 (706)
...+..+......+.+++.+..|.++.......|..... .+....+ ....+.+..+.... ..+.+++..+..|.
T Consensus 38 ~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~ 117 (323)
T d1wp5a_ 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccceeeecccCCcceEEEeeccccccceeEEEEeehhh
Confidence 445667777788889999999999999888776643321 1111111 12344454444433 24678889999999
Q ss_pred EEEEeCCCcee------eEeee-CCcceEEEeeeeeecCCCEEEEEeeCCCcEEEEeCCCceE-------EEEEeC-CCc
Q 005254 378 VQVYDLSSMSC------SYVLA-GHSEIVLCLDTCALSSGKILIVTGSKDNSVRLWDSESRCC-------VGVGTG-HMG 442 (706)
Q Consensus 378 i~~~d~~~~~~------~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~-~~~ 442 (706)
+...++..... ...+. .....+..+. ...+... ++..+..|.+..++...-.. +.-+.. ...
T Consensus 118 iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~--~~~~~~~-i~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D 194 (323)
T d1wp5a_ 118 VKKTELKHYKAQRYSKPLTGINLKNDDQVVDVH--LTDGMNE-LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGD 194 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEE--EECSCSE-EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTC
T ss_pred eeeccHHHhhhhhccchhhhcccccccccccee--ccCCCeE-EEEEEecceeeEeecccccccCccccccccccccccc
Confidence 99988754321 11111 2333444443 3444455 77778899988887653211 111111 233
Q ss_pred CeEEEE-EecCCCeEEEEecCCCeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEEEcCCCCEEEEeeCCCcEEEE
Q 005254 443 AVGAVA-FSKKLQNFLVSGSSDHTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLAVAPNDSLVCTGSQDRTACVW 521 (706)
Q Consensus 443 ~v~~~~-~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~ 521 (706)
.+-+.. +.+++. .++..+..|..+.-.+.........................+..+....+...++..+..|.+.-.
T Consensus 195 ~vv~~~~~~~~~~-~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~ 273 (323)
T d1wp5a_ 195 YIVSGQLITSKDE-SIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETI 273 (323)
T ss_dssp CEEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEE
T ss_pred ccchhhhcccccc-ceeeeeeeheeecccchhhccccccccccccccccccccceeeeeEecCCCCEEEEEeCCCEEEEE
Confidence 444443 334434 678888888888776654321110000000111111122345555555555666666777776655
Q ss_pred eC
Q 005254 522 RL 523 (706)
Q Consensus 522 d~ 523 (706)
++
T Consensus 274 ~~ 275 (323)
T d1wp5a_ 274 KV 275 (323)
T ss_dssp EG
T ss_pred Eh
Confidence 54
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.11 E-value=8 Score=30.16 Aligned_cols=155 Identities=16% Similarity=0.229 Sum_probs=82.1
Q ss_pred eeeEeeEeCCCCcEEEEEecCCcEEEEeCCCceeeEeee--C-------CcceEEEeeeeeecCCCEEEEEeeC-CCcEE
Q 005254 355 EILDLKFLGEEEQYLAVATNIEQVQVYDLSSMSCSYVLA--G-------HSEIVLCLDTCALSSGKILIVTGSK-DNSVR 424 (706)
Q Consensus 355 ~v~~~~~~~~~~~~l~~~~~~~~i~~~d~~~~~~~~~~~--~-------~~~~i~~~~~~~~~~~~~~l~~~~~-dg~i~ 424 (706)
.+.++++ ++...+.+++......+|-++.++...... + ....|..+. +...+..-++++.- .|.++
T Consensus 105 RI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g--~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 105 RILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLG--FFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp EEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEE--EEETTEEEEEEEETTTEEEE
T ss_pred EEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEe--eecCCcceEEEEecccCCEE
Confidence 4445554 477788888888888888888776544322 1 122333333 33333333444444 66777
Q ss_pred EEeCCCceEEEEEeCCCcCeEEEEEecCCCeEEEEecCC---CeEEEEEecCCCCCCCcccccceeEEEeecCcceEEEE
Q 005254 425 LWDSESRCCVGVGTGHMGAVGAVAFSKKLQNFLVSGSSD---HTIKVWSFDGLSDDAEQPMNLKAKAVVAAHGKDINSLA 501 (706)
Q Consensus 425 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 501 (706)
+++...|. ++...+.+..+ ++++-.. ....-+|++.++-+. ..........-....|+.+-
T Consensus 181 i~tpkeGS-----------~~~ay~~~gnK--V~sdyEt~gEsywit~D~~s~~yer---ve~P~kd~~sy~p~~I~~~~ 244 (313)
T d2hu7a1 181 VFDSGEGS-----------FSSASISPGMK--VTAGLETAREARLVTVDPRDGSVED---LELPSKDFSSYRPTAITWLG 244 (313)
T ss_dssp EECCSSEE-----------EEEEEECTTSC--EEEEEEESSCEEEEEECTTTCCEEE---CCCSSCHHHHHCCSEEEEEE
T ss_pred EecCCCCc-----------ccceeEccCce--eeeccCCCCceEEEEEecccCceee---eecCcccceeecceEEEeee
Confidence 77665554 44444444433 2222111 111123444332100 00001111111234577788
Q ss_pred EcCCCCEEEEeeCCCcEEEEeCCCccEEEE
Q 005254 502 VAPNDSLVCTGSQDRTACVWRLPDLVSVVT 531 (706)
Q Consensus 502 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 531 (706)
+.|++++++.+-.||.-++|. +++.+..
T Consensus 245 Y~Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 245 YLPDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp ECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred eCCCCcEEEEEecCCchheee--cceEecC
Confidence 999999999999999999987 5665544
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.41 E-value=13 Score=30.79 Aligned_cols=166 Identities=13% Similarity=-0.017 Sum_probs=76.2
Q ss_pred CCeEEEEEccCCeEEEeecCCCccEEEEEEccCCCEEEEEeccCeEEEEECCCCeEEEEeeccCCCeEEEEECCCCCEEE
Q 005254 39 GESINIVDLSNASIKSTIEGGSDTITALALSPDDKLLFSSGHSREIRVWDLSTLKCLRSWKGHDGPAIGMACHPSGGLLA 118 (706)
Q Consensus 39 ~~~i~i~d~~~~~~~~~l~~~~~~i~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 118 (706)
++.|+-|-....-++..-......|..++.-.. ..++ - .|+.+..|.....-...........+..++..... .+
T Consensus 43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~a-l-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~--~~ 117 (273)
T d1jtdb_ 43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLA-L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA--SY 117 (273)
T ss_dssp TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEE-E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTE--EE
T ss_pred CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceee-e-eeeeeeccCCCcceeeccccccccceeEEeeeccc--cc
Confidence 445666654433222211222334455543222 2222 2 47889999764322111111122334444443322 22
Q ss_pred EecCCCcEEEEECCCCeEEEEeeCCCCcEEEEEEcCCCCceEEEEEecCCeEEEEECCCCeeEEEeecccceEEEEEEec
Q 005254 119 TAGADRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDTDKSLLFSGSDDATVRVWDLLAKKCVATLDKHFSRVTSMAITS 198 (706)
Q Consensus 119 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 198 (706)
. -.|+.+..|.................|..++-. .. ......++.++.|-................|..++...
T Consensus 118 ~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~--~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~ 191 (273)
T d1jtdb_ 118 A-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VY--TALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI 191 (273)
T ss_dssp E-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SS--EEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECS
T ss_pred c-cccccceecccCCCCceeeeccCCceEEEEecc---ce--eeeeecccceeEeecccCCcccccccccCCccceeccc
Confidence 2 247888888754332211111223345554432 22 23334578899996544332222223345676665533
Q ss_pred CCCEEEEEeCCCEEEEEeCC
Q 005254 199 DGSTLISAGRDKVVNLWDLR 218 (706)
Q Consensus 199 ~~~~l~~~~~dg~i~~w~~~ 218 (706)
.+.+... ||.|+.|=..
T Consensus 192 --~h~~~l~-dG~v~~WG~n 208 (273)
T d1jtdb_ 192 --FHSLALK-DGKVIAWGDN 208 (273)
T ss_dssp --SEEEEEE-TTEEEEEECC
T ss_pred --eeeEEEe-cCcEEEcCCC
Confidence 2333333 7999999654
|