Citrus Sinensis ID: 005297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700---
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHcHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHcccccccHHccEEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHcHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEccccccHHHHHHHHcccccccccccccccccccEEEccccccccccccccccEEEEEEccccccccHHHHHHHHHHHcccEEccccccccccccccc
ccccEEcEEEEEcccccccccccccccccccccccccccccccccccccccccccccEccccHccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHccccccccccccccccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHcccccccEEEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHEEccccccccccccEEEEccccccEEEEEEcHHHHHHHHHHHHEEHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcHcccccccccccEEEEEccccccEEEEEccccccccHHHHHcccccccccccEEEEEccccccEEcEEEcccccEcccccEEEEEEccccccccccHHHHHHHHccccEEEEcHHHHHHHHHHcc
mtgmavptialyasppssvcsathqinahttydfdlnsrssastsstaaapssqkqtigglsclfssssemgsyRSEELKELSssfgyayspsklcgsssslkrdqspvsvfqgpvscsgssglfnGFVRNALgscvdydsssfrvhngdavlnvgssaALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAhrgqmrasgdpylLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNmmtldalplckrQRFAKETLEIFVPLANRLGISTWKVQLENLcfkhlnpdqhtELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEvpgkmkdyitrpkfngyqslhtvvtgeglvplEVQIRTKEMHLQAEFGFAAhwrykegdcqhsSFVLQMVEWARWVLTWQCeamskdrscvgngdsikppctfpshaddcpfsykpqcshdgpvFVIMIENdkmsvqefptsstVMDLLERagrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslTEYREEIQRMYERGlavsntgpavtsmvgsrs
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSStaaapssqkqtiggLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQlsklarenntasktveadrLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAgrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslteYREEIQRMYerglavsntgpavtsmvgsrs
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNsrssastsstaaapssQKQTIGGLSCLFssssemgsyrseeLKELSSSFGYAYspsklcgsssslkRDQSPVSVFQGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
********IALY*******CSATHQINAHTTYD**********************************************************************************VSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS***************VEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKM***************************YGF**************VGDPRCKLKMGDVVELTPAI*************************************
****AVPTIALYASPPSSVCSATHQI***************************************************************************************************************************************************VEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARE******TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWR****************EWARWVLTWQCEAMS***SCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGL*****************
MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLN********************IGGLSCLFSS****************SSFGYAYSPSK******************QGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGP**********
**GMAVPTIALYASPPSSVCSA***********************************************************************************QSPVSVFQGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFR*************AALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM**********DSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSM***RS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGMAVPTIALYASPPSSVCSATHQINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGLSCLFSSSSEMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQSPVSVFQGPVSCSGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query703 2.2.26 [Sep-21-2011]
P74007 760 Probable guanosine-3',5'- N/A no 0.490 0.453 0.448 2e-77
O87331 760 GTP pyrophosphokinase OS= yes no 0.482 0.446 0.433 8e-75
O54408 734 GTP pyrophosphokinase OS= yes no 0.490 0.470 0.418 3e-73
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.470 0.454 0.408 2e-72
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.470 0.454 0.408 2e-72
O52177 757 GTP pyrophosphokinase OS= yes no 0.480 0.446 0.410 6e-72
P52560 847 GTP pyrophosphokinase OS= yes no 0.477 0.396 0.417 2e-71
O85709 841 GTP pyrophosphokinase OS= N/A no 0.477 0.399 0.413 3e-70
P0A0E9 736 GTP pyrophosphokinase OS= yes no 0.456 0.436 0.410 1e-69
P0A0F0 736 GTP pyrophosphokinase OS= yes no 0.456 0.436 0.410 1e-69
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 222/357 (62%), Gaps = 12/357 (3%)

Query: 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 259
            + +AF  A   H  Q R SG+PY+ H V  A LL  +G +  ++AAG LHD ++D  +S
Sbjct: 53  LICRAFCFAYDLHAQQRRKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDIS 112

Query: 260 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 318
            + I   FG   A LVEGV+KLS+       N +++   +A+    MFLAMA D R +++
Sbjct: 113 IEQIEALFGEETASLVEGVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVV 166

Query: 319 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 378
           KLADRLHNM TLDAL   K++R A+ET +IF PLANRLGI  +K +LE+L FK+L PD +
Sbjct: 167 KLADRLHNMRTLDALSPEKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSY 226

Query: 379 TELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 436
            ++ S +VE     E+ + +  + L   L+D+ I    L GR K LY I+ KM  +    
Sbjct: 227 RKIQSLVVEKRGDRESRLETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAF 286

Query: 437 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEG 496
           +EI+DI  LR+IVE++ +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G  
Sbjct: 287 EEIYDIAALRIIVESKGECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLT 346

Query: 497 LVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 550
             PLE+QIRT+EMH  AE+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct: 347 SRPLEIQIRTEEMHHVAEYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=relA PE=3 SV=2 Back     alignment and function description
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|O85709|RELA_STRAT GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query703
225442114724 PREDICTED: GTP pyrophosphokinase-like [V 0.974 0.946 0.732 0.0
356558920715 PREDICTED: uncharacterized protein LOC10 0.972 0.956 0.741 0.0
224054061716 predicted protein [Populus trichocarpa] 0.958 0.941 0.745 0.0
356519788714 PREDICTED: uncharacterized protein LOC10 0.972 0.957 0.735 0.0
224070802737 predicted protein [Populus trichocarpa] 0.984 0.938 0.738 0.0
33637487718 RSH2 [Nicotiana tabacum] 0.980 0.959 0.722 0.0
15081594721 RSH-like protein [Capsicum annuum] 0.970 0.945 0.709 0.0
37196706729 RelA-SpoT like protein PsRSH1 [Pisum sat 0.985 0.950 0.720 0.0
357514019726 GTP pyrophosphokinase [Medicago truncatu 0.980 0.949 0.711 0.0
449461673733 PREDICTED: GTP pyrophosphokinase-like [C 0.967 0.927 0.683 0.0
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1076 bits (2783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/739 (73%), Positives = 606/739 (82%), Gaps = 54/739 (7%)

Query: 4   MAVPTIALYASPPSSVCSATH--QINAHTTYDFDLNSRSSASTSSTAAAPSSQKQTIGGL 61
           MAVPTIALYASPPSSVCSA+H  QIN+H+++DF+LNSRSS+S +++ +    Q+  +GGL
Sbjct: 1   MAVPTIALYASPPSSVCSASHPCQINSHSSHDFELNSRSSSSATASPS----QRPAMGGL 56

Query: 62  SCLFSSSS-------EMGSYRSEELKELSSSFGYAYSPSKLCGSSSSLKRDQS---PVSV 111
           SCLFSS +       E+GS   +  +ELSSSF         C   SSLKRD+S   PVSV
Sbjct: 57  SCLFSSPAVKHAGGEELGSMWHDRGEELSSSF---------CYLGSSLKRDRSESSPVSV 107

Query: 112 FQGP---------------------------VSCSGSSGLFNGFVRNALGSCVDYDSSSF 144
           FQGP                           VS  G+SGLF+GFVR ALGS +DYDS +F
Sbjct: 108 FQGPVSCSSSVGGSSRSPPMRIARERSGGDGVSRVGTSGLFSGFVRGALGSYIDYDSPTF 167

Query: 145 RVHNGDAVLNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKA 204
            +  G   LN  SS+ L+DELTFNMEDN  + N E + K+ L  AQL+HKIF EDFV+KA
Sbjct: 168 EI--GGGALNADSSSVLVDELTFNMEDNFPDSNSEPHVKDLLLGAQLRHKIFSEDFVVKA 225

Query: 205 FYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIF 264
           FYEAERAHRGQMRASGDPYL HCVETA+LLA IGANSTVV +GLLHDTLDD+F+ YD IF
Sbjct: 226 FYEAERAHRGQMRASGDPYLQHCVETAVLLAKIGANSTVVVSGLLHDTLDDSFMGYDDIF 285

Query: 265 RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRL 324
            TFGAGVADLVEGVSKLSQLSKLAR+NNTASKTVEADRLHTMFLAMADARAVLIKLADRL
Sbjct: 286 GTFGAGVADLVEGVSKLSQLSKLARDNNTASKTVEADRLHTMFLAMADARAVLIKLADRL 345

Query: 325 HNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSK 384
           HNMMTLDALPL K+QRFAKETLEIFVPLANRLGISTWK QLENLCFKHLNPDQH ELSSK
Sbjct: 346 HNMMTLDALPLGKQQRFAKETLEIFVPLANRLGISTWKEQLENLCFKHLNPDQHKELSSK 405

Query: 385 LVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYG 444
           LV+ FDEAM+TSA EKLE ALKD+ IS+ VL GRHKSLYSI+CKMLKK +TMDEIHDI+G
Sbjct: 406 LVKSFDEAMITSAKEKLEPALKDEAISYHVLSGRHKSLYSIYCKMLKKNMTMDEIHDIHG 465

Query: 445 LRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQI 504
           LRLIVENEEDCY+AL VVH+LW+EVPG+ KDYI   KFNGY+SLHTVV GEG+VPLEVQI
Sbjct: 466 LRLIVENEEDCYKALGVVHRLWSEVPGRFKDYIKHSKFNGYRSLHTVVRGEGMVPLEVQI 525

Query: 505 RTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDS 564
           RT+EMHLQAE+GFAAHWRYKEGDC HSSFVLQMVEWARWV+TW CE MSKD+S VG  +S
Sbjct: 526 RTREMHLQAEYGFAAHWRYKEGDCTHSSFVLQMVEWARWVVTWHCETMSKDQSPVGYDNS 585

Query: 565 IKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGS 624
           IKPPC FPSH+D CPFSYKP CS DGPVFVIM+ENDKMSVQE P +ST+MDLLER GRGS
Sbjct: 586 IKPPCKFPSHSDGCPFSYKPDCSQDGPVFVIMLENDKMSVQECPANSTIMDLLERTGRGS 645

Query: 625 SRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYER 684
           SRW+PYGFP+KEELRPRLNH+AV DP CKLKMGDVVELTPAIPDKSL  YREEIQRMYER
Sbjct: 646 SRWTPYGFPIKEELRPRLNHEAVNDPTCKLKMGDVVELTPAIPDKSLIVYREEIQRMYER 705

Query: 685 GLAVSNTGPAVTSMVGSRS 703
           G++VS+   A +SMVG RS
Sbjct: 706 GVSVSSKWSAASSMVGWRS 724

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max] Back     alignment and taxonomy information
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max] Back     alignment and taxonomy information
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum] Back     alignment and taxonomy information
>gi|37196706|dbj|BAC97801.1| RelA-SpoT like protein PsRSH1 [Pisum sativum] Back     alignment and taxonomy information
>gi|357514019|ref|XP_003627298.1| GTP pyrophosphokinase [Medicago truncatula] gi|66947621|emb|CAJ00006.1| RelA-SpoT homolog 1 [Medicago truncatula] gi|355521320|gb|AET01774.1| GTP pyrophosphokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461673|ref|XP_004148566.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] gi|449528710|ref|XP_004171346.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query703
TAIR|locus:2014335715 RSH3 "RELA/SPOT homolog 3" [Ar 0.954 0.938 0.657 5.8e-240
TAIR|locus:2088262709 RSH2 "RELA/SPOT homolog 2" [Ar 0.960 0.952 0.671 7.6e-238
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.490 0.481 0.452 1.7e-73
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.490 0.481 0.452 1.7e-73
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.490 0.474 0.431 1.8e-72
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.490 0.473 0.438 4.4e-68
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.487 0.479 0.415 1.2e-67
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.489 0.490 0.423 1.8e-64
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.495 0.495 0.422 2e-63
UNIPROTKB|P66014 738 relA "Bifunctional (p)ppGpp sy 0.485 0.462 0.397 3.3e-63
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2313 (819.3 bits), Expect = 5.8e-240, P = 5.8e-240
 Identities = 479/729 (65%), Positives = 538/729 (73%)

Query:     8 TIALYASPPSSVCSATHQINAHTTYDFDLNXXXXXXXXXXXXXXXXQKQTI-GGLSCLFX 66
             TIALYASP S+VCS  HQINAH + D DLN                    +  G S    
Sbjct:     6 TIALYASPASTVCSTAHQINAHISCDLDLNSRSSSASSSTSSPTIGGLSLLFSGASVKSS 65

Query:    67 XXXXXXXXXX----XXLKE-------LSSSFGYAYXXXXXXXXXXXXXRD-QSPVSVFQG 114
                             ++        LS SF Y+              RD QSPVSV  G
Sbjct:    66 SSSSSSHPSVGEELASIRHDRSEDRTLSGSFCYS---PSKFIGSSYLKRDHQSPVSVLHG 122

Query:   115 PVSCS---------------------GSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVL 153
             P+S                       GSS LFNGFVR A+GSCVDYD+ S          
Sbjct:   123 PISSGNSPPMRISRDRNLDGGSALRVGSSRLFNGFVRKAIGSCVDYDTDS---------- 172

Query:   154 NVGSSAALIDE-LTFNMEDNIVEGNLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAH 212
                    L+DE L F M+D       + YA++ L  AQLKHKIF ++ VIKAFYEAE+AH
Sbjct:   173 ------VLVDEQLPFTMDDGFEGERRQPYARDLLRRAQLKHKIFEDESVIKAFYEAEKAH 226

Query:   213 RGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 272
             RGQMRA+GDPYL HCVETAMLLA IGANSTVV AG+LHDTLDD+F+SYDYI RTFG+GVA
Sbjct:   227 RGQMRATGDPYLQHCVETAMLLADIGANSTVVVAGILHDTLDDSFMSYDYILRTFGSGVA 286

Query:   273 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDA 332
             DLVEGVSKLSQLSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL A
Sbjct:   287 DLVEGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLYA 346

Query:   333 LPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEA 392
             LP  KRQRFAKETLEIF PLANRLGIS+WKV+LENLCFKHL+PDQH E+S  L + FDEA
Sbjct:   347 LPPVKRQRFAKETLEIFAPLANRLGISSWKVKLENLCFKHLHPDQHHEMSDMLEDSFDEA 406

Query:   393 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 452
             M+TSAIEKLEQALK + IS+ V+ GRHKSLYSI+CKMLKKKLTMDEIHDI+GLRLIV+NE
Sbjct:   407 MITSAIEKLEQALKKEGISYHVVSGRHKSLYSIYCKMLKKKLTMDEIHDIHGLRLIVDNE 466

Query:   453 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 512
             +DCY+AL VVH+LW+EVPGK+KDYI+ PKFNGYQSLHTVV G+G +PLEVQIRTKEMHLQ
Sbjct:   467 KDCYKALGVVHKLWSEVPGKLKDYISHPKFNGYQSLHTVVMGDGTIPLEVQIRTKEMHLQ 526

Query:   513 AEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFP 572
             AEFGFAAHWRYKEGDC+HSSFVLQMVEWARWV+TW  E MSKD S + + +   P C+FP
Sbjct:   527 AEFGFAAHWRYKEGDCKHSSFVLQMVEWARWVVTWHFETMSKDGSSICSSE---PLCSFP 583

Query:   573 SHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGF 632
             SHA+DCPFSYKP  + +GPV+VI+IEN+KM+VQEFP +STV DLL RAG GSSRWS Y  
Sbjct:   584 SHAEDCPFSYKPSGNQEGPVYVIVIENEKMTVQEFPENSTVSDLLRRAGPGSSRWSMYSI 643

Query:   633 PLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTG 692
             P KEELRPRLN   V D +CKLKMGDVVELTPAIPDKSLTEYREEIQRMY+RGLA S   
Sbjct:   644 PAKEELRPRLNQTPVSDLKCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLAFSRPH 703

Query:   693 PAVT-SMVG 700
              A T +MVG
Sbjct:   704 RAATGTMVG 712
GO:0003824 "catalytic activity" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008728 "GTP diphosphokinase activity" evidence=IGI
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query703
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-141
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 1e-117
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 3e-92
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 3e-67
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 7e-53
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 4e-52
pfam13328156 pfam13328, HD_4, HD domain 8e-51
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 2e-38
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 5e-13
pfam01966111 pfam01966, HD, HD domain 2e-08
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 3e-05
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 1e-04
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  429 bits (1105), Expect = e-141
 Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 14/374 (3%)

Query: 181 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN 240
             +E L +         +  + KA+Y A +AH GQ R SG+PY+ H +E A +LA +  +
Sbjct: 8   ELEELLDSLATYLPP-VDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMD 66

Query: 241 STVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 300
              +AA LLHDT++D  ++ + I   FG  VA LVEGV+KL ++ +L+     + + ++A
Sbjct: 67  METLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQA 121

Query: 301 DRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 359
           + L  M LAM  D R VLIKLADRLHN+ TL  L   KR+R A+ETL+I+ PLA+RLGI 
Sbjct: 122 ENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIG 181

Query: 360 TWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEAMVTSAIEKLEQALKDKNISFLVLCG 417
             K +LE+L F++L+PDQ+  ++  L E     E  + + + +L + LK   I   V  G
Sbjct: 182 QIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAEVS-G 240

Query: 418 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYI 477
           R K +YSI+ KM KKKL+ DEI+D+  +R+IV+   DCY AL +VH LW  +PG+  DYI
Sbjct: 241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYI 300

Query: 478 TRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM 537
             PK NGYQSLHT V G    P+EVQIRTKEMH  AE G AAHWRYKEG     S   + 
Sbjct: 301 ANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEG----GSAYEEK 356

Query: 538 VEWARWVLTWQCEA 551
           + W R +L WQ E+
Sbjct: 357 IAWLRQLLEWQEES 370

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 703
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.96
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.96
COG2357231 PpGpp synthetase catalytic domain [General functio 99.94
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.38
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 98.92
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 98.83
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.32
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.18
PRK09602396 translation-associated GTPase; Reviewed 98.02
cd0493876 TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma 98.02
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 97.62
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 97.22
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 97.2
PRK0565966 sulfur carrier protein ThiS; Validated 96.93
PRK0643767 hypothetical protein; Provisional 96.91
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 96.89
PRK0177795 hypothetical protein; Validated 96.76
PRK0694465 sulfur carrier protein ThiS; Provisional 96.54
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 96.48
PRK0744070 hypothetical protein; Provisional 96.38
PRK0836470 sulfur carrier protein ThiS; Provisional 96.16
PRK0769667 sulfur carrier protein ThiS; Provisional 96.15
PTZ00258390 GTP-binding protein; Provisional 96.11
PRK0805366 sulfur carrier protein ThiS; Provisional 96.1
COG210468 ThiS Sulfur transfer protein involved in thiamine 96.0
PRK14707 2710 hypothetical protein; Provisional 95.99
PRK09601364 GTP-binding protein YchF; Reviewed 95.9
PLN02908 686 threonyl-tRNA synthetase 95.55
PRK0586365 sulfur carrier protein ThiS; Provisional 95.4
PRK12444 639 threonyl-tRNA synthetase; Reviewed 95.29
PRK0648865 sulfur carrier protein ThiS; Validated 95.17
COG1163365 DRG Predicted GTPase [General function prediction 95.17
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 94.6
PF1445181 Ub-Mut7C: Mut7-C ubiquitin 94.48
smart00471124 HDc Metal dependent phosphohydrolases with conserv 94.18
PRK0608384 sulfur carrier protein ThiS; Provisional 94.14
PLN0279982 Molybdopterin synthase sulfur carrier subunit 93.98
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 93.65
PRK147072710 hypothetical protein; Provisional 92.64
PF0259777 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam 92.53
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 92.07
PRK11840 326 bifunctional sulfur carrier protein/thiazole synth 92.05
TIGR0168280 moaD molybdopterin converting factor, subunit 1, n 90.85
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 90.47
PRK09169 2316 hypothetical protein; Validated 90.24
PRK12703339 tRNA 2'-O-methylase; Reviewed 89.92
COG291499 Uncharacterized protein conserved in bacteria [Fun 84.19
TIGR0168788 moaD_arch MoaD family protein, archaeal. Members o 82.69
PRK1113081 moaD molybdopterin synthase small subunit; Provisi 82.04
TIGR00295164 conserved hypothetical protein TIGR00295. This set 81.05
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2e-134  Score=1146.00  Aligned_cols=456  Identities=41%  Similarity=0.640  Sum_probs=427.5

Q ss_pred             HHHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCH
Q 005297          181 YAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSY  260 (703)
Q Consensus       181 ~~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~  260 (703)
                      .++++++.+..+.+..+.. +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++|||++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~   86 (701)
T COG0317           8 ELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTE   86 (701)
T ss_pred             cHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCH
Confidence            4567788888888766666 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHH
Q 005297          261 DYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQ  339 (703)
Q Consensus       261 eeI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~  339 (703)
                      ++|++.||++|++||+||||++.++++.     .....|+|++||||++|. |+||++||||||||||||+..++++||+
T Consensus        87 e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~  161 (701)
T COG0317          87 ELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRR  161 (701)
T ss_pred             HHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHH
Confidence            9999999999999999999999984221     123458999999999997 9999999999999999999998899999


Q ss_pred             HHHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhh--hhhhhHHHHHHHHHHHHHhcCCceecccc
Q 005297          340 RFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC--FDEAMVTSAIEKLEQALKDKNISFLVLCG  417 (703)
Q Consensus       340 riA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~--~~e~~i~~v~~~L~~~L~~~gI~~~~V~g  417 (703)
                      ++|+||++|||||||||||+++|||||||||+||+|++|+.|++.|.+.  +|++++++++..|++.|.+.||.++ |+|
T Consensus       162 riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~g  240 (701)
T COG0317         162 RIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VSG  240 (701)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EEc
Confidence            9999999999999999999999999999999999999999999999876  4899999999999999999999996 999


Q ss_pred             cccChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCe
Q 005297          418 RHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGL  497 (703)
Q Consensus       418 R~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g  497 (703)
                      |+||+||||+||++|++.|++|+|++||||||++..|||++||+||.+|+|+|+|||||||+||+||||||||||.||.|
T Consensus       241 R~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~g  320 (701)
T COG0317         241 RPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTIPDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEG  320 (701)
T ss_pred             CCCcccHHHHHHHHcccChhhhhhheeEEEEECChHHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeehhhHHHHHhhhhhhcccccCCCCcchhHHHHHHHHHHHHHHHHHhcccCCCCCccCcCCCCCCCCCCCCCC
Q 005297          498 VPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADD  577 (703)
Q Consensus       498 ~~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~~~~~~~~~~Wl~~Lle~q~e~~~~~~~~~~~~~~lk~~~~f~~~~~d  577 (703)
                      .++||||||..||..||+|+||||+||+++.    ...+...||++|++||++..|    +.||+|.+|.| +|    .|
T Consensus       321 ~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf----~d  387 (701)
T COG0317         321 KPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LF----PD  387 (701)
T ss_pred             ceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-cc----Cc
Confidence            9999999999999999999999999999872    446788999999999999877    57899999997 45    48


Q ss_pred             CCcccCCCCCCCCCeEEEEEeCCccceEecCCCCCHhhhhHhhccCCCCCCCCCCCCccccccccCCeecCCCCCcCCCC
Q 005297          578 CPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMG  657 (703)
Q Consensus       578 ~iyvfTPkg~~~g~vfV~~~~g~~~~v~~LP~GsTvlDfAy~i~~~~~~~~~~g~~~~~~igakVNg~~v~~l~~~Lk~G  657 (703)
                      +||||||||                +|++||.||||+||||+||+++|         ++|+||||||++|| ++++|+||
T Consensus       388 ~VyvfTPkG----------------~vi~LP~GatplDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~G  441 (701)
T COG0317         388 RVYVFTPKG----------------KVIDLPKGATPLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQTG  441 (701)
T ss_pred             eEEEECCCC----------------CEEeCCCCCcchhhhhhhhchhc---------ceeeEEEECCEEec-cceecCCC
Confidence            999999995                79999999999999999999986         48999999999996 99999999


Q ss_pred             CEEEEeeC---CCCccHH------HHHHHHHHHH
Q 005297          658 DVVELTPA---IPDKSLT------EYREEIQRMY  682 (703)
Q Consensus       658 DvVEIit~---~p~~~l~------~~r~~i~rm~  682 (703)
                      |+|||+|.   .|+..|+      .+|.+|+++|
T Consensus       442 d~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~  475 (701)
T COG0317         442 DQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWF  475 (701)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHH
Confidence            99999994   4777796      5799999999

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>PF14451 Ub-Mut7C: Mut7-C ubiquitin Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01687 moaD_arch MoaD family protein, archaeal Back     alignment and domain information
>PRK11130 moaD molybdopterin synthase small subunit; Provisional Back     alignment and domain information
>TIGR00295 conserved hypothetical protein TIGR00295 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query703
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 1e-68
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-08
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 1e-07
3l9d_A255 The Crystal Structure Of Smu.1046c From Streptococc 3e-07
2be3_A226 Structure Of A Gtp Pyrophosphokinase Family Protein 3e-06
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  257 bits (657), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/331 (42%), Positives = 207/331 (62%), Gaps = 13/331 (3%)
Query: 200 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 259
           FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++
Sbjct: 27  FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDIT 86
Query: 260 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLI 318
            D I   FG  V D+V+GV+KL ++   + E   A           M +AM+ D R +L+
Sbjct: 87  LDNIEFDFGKDVRDIVDGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILV 140
Query: 319 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQH 378
           KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  + 
Sbjct: 141 KLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEF 200
Query: 379 TELSSKLVECFDE--AMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM 436
            ++S  + E   E  A+V   + K++    ++ + F  + GR K +YSI+ KM  KK   
Sbjct: 201 YKISHMMNEKRREREALVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRF 259
Query: 437 DEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-E 495
           D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G +
Sbjct: 260 DQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK 319
Query: 496 GLVPLEVQIRTKEMHLQAEFGFAAHWRYKEG 526
           G  P+E+QIRTKEMH  AE+G AAHW YK+G
Sbjct: 320 G--PIEIQIRTKEMHQVAEYGVAAHWAYKKG 348
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure
>pdb|3L9D|A Chain A, The Crystal Structure Of Smu.1046c From Streptococcus Mutans Ua159 Length = 255 Back     alignment and structure
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From Streptococcus Pneumoniae Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query703
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-152
3nr1_A178 HD domain-containing protein 3; stringent response 6e-57
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 2e-53
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 7e-51
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 2e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  445 bits (1147), Expect = e-152
 Identities = 144/360 (40%), Positives = 216/360 (60%), Gaps = 15/360 (4%)

Query: 198 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAF 257
             FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  
Sbjct: 25  AAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTD 84

Query: 258 LSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAV 316
           ++ D I   FG  V D+V+GV+KL ++   + E         A+    M +AM+ D R +
Sbjct: 85  ITLDNIEFDFGKDVRDIVDGVTKLGKVEYKSHE------EQLAENHRKMLMAMSKDIRVI 138

Query: 317 LIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPD 376
           L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  
Sbjct: 139 LVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNET 198

Query: 377 QHTELSSKLVECFD--EAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKL 434
           +  ++S  + E     EA+V   + K++    ++ +   V  GR K +YSI+ KM  KK 
Sbjct: 199 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVY-GRPKHIYSIYRKMRDKKK 257

Query: 435 TMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG 494
             D+I D+  +R ++E + D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G
Sbjct: 258 RFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYG 317

Query: 495 -EGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQM--VEWARWVLTWQCEA 551
            +G  P+E+QIRTKEMH  AE+G AAHW YK+G     +   Q   + W + ++  Q  +
Sbjct: 318 PKG--PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDAS 375
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query703
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 100.0
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 100.0
3nr1_A178 HD domain-containing protein 3; stringent response 100.0
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 99.67
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 99.23
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 98.78
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 98.68
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 98.59
1wxq_A397 GTP-binding protein; structural genomics, riken st 98.51
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 96.79
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 96.7
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 96.67
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 96.61
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 96.47
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 96.44
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 96.39
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 96.38
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 96.33
2hj1_A97 Hypothetical protein; structural genomics, PSI, pr 96.15
2cu3_A64 Unknown function protein; thermus thermophilus HB8 96.12
4a9a_A376 Ribosome-interacting GTPase 1; DRG-DFRP complex, r 95.43
2q5w_D77 Molybdopterin converting factor, subunit 1; MOCO, 95.4
1jal_A363 YCHF protein; nucleotide-binding fold, structural 94.89
2ohf_A396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 94.5
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 94.43
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 94.29
3po0_A89 Small archaeal modifier protein 1; ubiquitin-like 94.2
3rpf_C74 Molybdopterin converting factor, subunit 1 (MOAD); 93.41
1fm0_D81 Molybdopterin convertin factor, subunit 1; molybde 92.1
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 91.83
3dto_A223 BH2835 protein; all alpha-helical protein, structu 91.43
2g1e_A90 Hypothetical protein TA0895; MOAD, molybdopterin, 91.25
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 91.08
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 90.44
2qgs_A225 Protein Se1688; alpha-helical protein, structural 89.77
3djb_A223 Hydrolase, HD family; all alpha-helical protein., 89.58
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 89.41
2l52_A99 Methanosarcina acetivorans SAMP1 homolog; beta-grA 87.54
3dwg_C93 9.5 kDa culture filtrate antigen CFP10A; sulfur ca 83.51
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=2.8e-105  Score=868.34  Aligned_cols=364  Identities=39%  Similarity=0.603  Sum_probs=312.1

Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 005297          182 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  261 (703)
Q Consensus       182 ~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e  261 (703)
                      +++|+..+..+++..+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus         9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e   88 (393)
T 1vj7_A            9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   88 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHH
Q 005297          262 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  340 (703)
Q Consensus       262 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~r  340 (703)
                      +|++.||++|+.||+||||+++++...      ....|+|++||||++|+ |+||++|||||||||||++..+++++|++
T Consensus        89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~------~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~  162 (393)
T 1vj7_A           89 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  162 (393)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHHhCHHHHHHHHHHHhcccCCccc------HHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence            999999999999999999999875321      23458999999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccCcchhhHHHHHHHhhh--hhhhHHHHHHHHHHHHHhcCCceeccccc
Q 005297          341 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR  418 (703)
Q Consensus       341 iA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~P~~y~~i~~~l~~~~--~e~~i~~v~~~L~~~L~~~gI~~~~V~gR  418 (703)
                      +|+||++|||||||||||++||||||||||+||+|+.|++|.++|.+..  ++++++.+++.|++.|++.||.+. |+||
T Consensus       163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R  241 (393)
T 1vj7_A          163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR  241 (393)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence            9999999999999999999999999999999999999999999998763  789999999999999999999985 9999


Q ss_pred             ccChHHHHHHHhhcCCCCCcccccEEEEEEECCHHHHHHHHHHHHhhccCCCCcccCccCCCCCCCcceeEEEEecCCee
Q 005297          419 HKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLV  498 (703)
Q Consensus       419 ~K~~ySI~~Km~rk~~~~~~I~Dl~giRIIv~~~~DCy~vlgiIh~~f~p~p~r~kDyIa~PK~NGYqSLHt~V~~~~g~  498 (703)
                      +|++||||+||+||+.+|++|+|++|+||||++.+|||+++|+||++|+|+|++|||||++||+||||||||+|.+|+| 
T Consensus       242 ~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-  320 (393)
T 1vj7_A          242 PKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-  320 (393)
T ss_dssp             CCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-
T ss_pred             eCChHHHHHHHHHhCCChhhhcccceEEEEECCHHHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEEEeehhhHHHHHhhhhhhcccccCCCCc--chhHHHHHHHHHHHHHHHHHhcc
Q 005297          499 PLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH--SSFVLQMVEWARWVLTWQCEAMS  553 (703)
Q Consensus       499 ~vEIQIRT~~Mh~wAE~G~aahw~YK~~~~~~--~~~~~~~~~Wl~~Lle~q~e~~~  553 (703)
                      ++||||||..||.|||+||++||+||++....  .....++++||++|++||++..+
T Consensus       321 ~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~  377 (393)
T 1vj7_A          321 PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNG  377 (393)
T ss_dssp             EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC------
T ss_pred             eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999874321  12334678999999999988766
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* Back     alignment and structure
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A Back     alignment and structure
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} Back     alignment and structure
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} Back     alignment and structure
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 703
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 2e-43
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 4e-37
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 4e-30
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

 Score =  153 bits (386), Expect = 2e-43
 Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 7/194 (3%)

Query: 182 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANS 241
            +E +A A          FV KA   A  AH  Q+R SG+PY++H ++ A +LA +  ++
Sbjct: 5   GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDA 64

Query: 242 TVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 301
             VA G LHD ++D  ++ D I   FG  V D+V+GV+KL       +    + +   A+
Sbjct: 65  VTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKL------GKVEYKSHEEQLAE 118

Query: 302 RLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIST 360
               M +AM+ D R +L+KLADRLHNM TL  L   K++R ++ET+EI+ PLA+RLGIS 
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178

Query: 361 WKVQLENLCFKHLN 374
            K +LE+L F++LN
Sbjct: 179 IKWELEDLAFRYLN 192
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query703
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 100.0
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 99.34
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.12
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 98.96
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 96.25
d1rwsa_68 Hypothetical protein PF1061 {Archaeon Pyrococcus f 96.14
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 94.78
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 94.72
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 94.37
d2hj1a177 Hypothetical protein HI0395 {Haemophilus influenza 94.35
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 91.34
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 90.63
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 89.99
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 86.7
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 86.46
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=1.9e-53  Score=419.81  Aligned_cols=187  Identities=42%  Similarity=0.606  Sum_probs=163.6

Q ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhCCCHHHHHHHHhhccccccCCCHH
Q 005297          182 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD  261 (703)
Q Consensus       182 ~~~ll~~~~~~~~~~d~~~I~kA~~~A~~aH~GQ~RksGePYI~Hpl~VA~ILa~lg~D~~tIaAALLHDvVEDT~vT~e  261 (703)
                      .++++..++.+.+..|.++|++|+.||.++|.||+|++|+|||.||++||.+|+++++|+++++||||||++|||.+|.+
T Consensus         5 ~e~~l~~~~~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~edt~~t~e   84 (192)
T d1vj7a1           5 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD   84 (192)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhhchhHHH
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCHHHHHHHHHhhcccccchhHhhccccchHHHHHHHHHHHhhcC-CceeehhhhhhhHhhcccccCCCHHHHHH
Q 005297          262 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR  340 (703)
Q Consensus       262 eI~~~FG~eVA~LV~gVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVvLIKLADRLhNMRtL~~~~~ekq~r  340 (703)
                      +|++.||++|+++|++|||+..++...      ....+++++|||+++|. |+||++|||||||||||++...+++++++
T Consensus        85 ~I~~~FG~~Va~lV~~ltk~~~~~~~~------~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~~~~~k~~~  158 (192)
T d1vj7a1          85 NIEFDFGKDVRDIVDGVTKLGKVEYKS------HEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER  158 (192)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred             HHHHhcchhHHHHHHHHHhhccccccc------cchHHHHHHHHHHHhhccCceeehhHHHHHHhhccccccCChHHHHH
Confidence            999999999999999999998876432      23457899999999997 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCchhHHHHHHhhhhhccC
Q 005297          341 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  374 (703)
Q Consensus       341 iA~ETl~IYaPLA~RLGi~~iK~ELEDLafryL~  374 (703)
                      +|+||+++|+|||+|||+|++|||||||||+|||
T Consensus       159 ~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~  192 (192)
T d1vj7a1         159 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  192 (192)
T ss_dssp             HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999986
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure